========== block2065948 (miRBaseHomolog hsa-mir-665) [miRBaseHomolog_cloningHIGH_randfoldOK] ========== #randfold block2065948: 0.002 randfold humanZ31p3_block2065948: 0.001 randfold mouseZ50p3_block2065948: 0.001 #forester humanZ31p3_block2065948: 0.542686 forester mouseZ50p3_block2065948: 0.926243 #identity: 91.67 block2065948 ACCAGGAGGCTGAGGTCCCTTAC #rat_gr91634_libT1S1 23 77 block2065948 ACCAGGAGGCTGAGGTCCCT #rat_gr91631_libT1S1 20 56 block2065948 ACCAGGAGGCTGAGGTCCC #rat_gr91630_libT1S1 19 45 block2065948 ACCAGGAGGCTGAGGTCCC #rat_gr91630_libT1S2 19 39 block2065948 ACCAGGAGGCTGAGGTCCCTTA #rat_gr91633_libT1S1 22 38 block2065948 ACCAGGAGGCTGAGGTCCCTTAC #rat_gr91634_libT1S2 23 36 block2065948 ACCAGGAGGCTGAGGTCCCT #rat_gr91631_libT1S2 20 25 block2065948 ACCAGGAGGCTGAGGTCCCTTA #rat_gr91633_libT1S2 22 20 block2065948 ACCAGGAGGCTGAGGTCCCTT #rat_gr91632_libT1S1 21 19 block2065948 ACCAGGAGGCTGAGGTCC #rat_gr91629_libT1S1 18 13 block2065948 ACCAGGAGGCTGAGGTCCCTT #rat_gr91632_libT1S2 21 10 block2065948 CCAGGAGGCTGAGGTCCC #rat_gr333390_libT1S1 18 6 block2065948 ACCAGGAGGCTGAGGTCC #rat_gr91629_libT1S2 18 3 block2065948 ACCAGGAGGCTGAGGTCCCTTACA #rat_gr91635_libT1S1 24 3 block2065948 CCAGGAGGCTGAGGTCCCTTAC #rat_gr333394_libT1S2 22 3 block2065948 ACCAGGAGGCTGAGGTCCC #rat_gr91630_libT3S2 19 2 block2065948 ACCAGGAGGCTGAGGTCCCT #rat_gr91631_libT2S2 20 2 block2065948 ACCAGGAGGCTGAGGTCCCTT #rat_gr91632_libT3S2 21 2 block2065948 ACCAGGAGGCTGAGGTCCCTTA #rat_gr91633_libT3S2 22 2 block2065948 ACCAGGAGGCTGAGGTCCCTTAC #rat_gr91634_libT3S2 23 2 block2065948 ACCAGGAGGCTGAGGTCCCTTAC #rat_gr91634_libT5S2 23 2 block2065948 CCAGGAGGCTGAGGTCCCT #rat_gr333391_libT1S2 19 2 block2065948 CCAGGAGGCTGAGGTCCCTTA #rat_gr333393_libT1S2 21 2 block2065948 CCAGGAGGCTGAGGTCCCTTAC #rat_gr333394_libT1S1 22 2 block2065948 ACCAGGAGGCTGAGGTCC #rat_gr91629_libT3S1 18 1 block2065948 ACCAGGAGGCTGAGGTCC #rat_gr91629_libT3S2 18 1 block2065948 ACCAGGAGGCTGAGGTCCC #rat_gr91630_libT5S2 19 1 block2065948 ACCAGGAGGCTGAGGTCCCT #rat_gr91631_libT3S1 20 1 block2065948 ACCAGGAGGCTGAGGTCCCTTA #rat_gr91633_libT4S2 22 1 block2065948 ACCAGGAGGCTGAGGTCCCTTAC #rat_gr91634_libT3S1 23 1 block2065948 ACCAGGAGGCTGAGGTCCCTTACA #rat_gr91635_libT1S2 24 1 block2065948 CCAGGAGGCTGAGGTCCC #rat_gr333390_libT1S2 18 1 block2065948 CCAGGAGGCTGAGGTCCCTT #rat_gr333392_libT1S2 20 1 block2065948 CAGTGCTCCCAGAACAGGGTCTCCTTGAGGGGCCTCTGCCTCTATCCAGGATTATCTTTTTATGACCAGGAGGCTGAGGTCCCTTACAGGCGGCCTCTTACTCTCTCCTTGAGCCCT humanZ31p3 -------------------------CGAGGGGTCTCTGCCTCTACCCAGGACT---CTTTCATGACCAGGAGGCTGAGGCCCCTCA------------------------------- mouseZ50p3 --------CCAGAACAGGGTCTCCTTGAGGGGCCTCTGCCTCTATCCAGGATTATGTTTTTATGACCAGGAGGCTGAGGTCCCTTACAGGCGGCCT--------------------- ****** *********** ****** * *** ****************** **** * block2065948 ...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................. #ENSRNOT00000062108 ENSRNOG00000040355 block2065948 .((.((((..(((..((((((.((((((((((((((.((((((.....((.((((......)))))).)))))).))))))))))).))).)))).))...)))......)))).)) 0.990 -47.20 # humanZ31p3 .((((((((((.((((((...((.((.. ...)).))....)))))).)))))))))). 1.000 -32.40 # mouseZ50p3 ........(((((.((((((((((((((.((((((.....((.(((((....))))))).)))))).))))))))))).))).))))) 0.998 -44.30 # #block2065948 chromosome:6:134177278:134177394:1 Same_strand|Exonic_non-coding|ENSRNOT00000062108|ENSRNOG00000040355 ## ENSRNOG00000040355|miRNA|| #humanZ31p3 chromosome:14:100411081:100411237:1 Same_strand|Boundary_non-coding|ENST00000390187|ENSG00000211521|miRNA|hsa-mir-665 [Source:miRBase;Acc:MI0005563] ## {MIR: hsa-mir-665} #mouseZ50p3 chromosome:12:110824522:110824609:1 Same_strand|Boundary_non-coding|ENSMUST00000102358|ENSMUSG00000076313|miRNA|mmu-mir-665 [Source:miRBase;Acc:MI0004171] ## {MIR: mmu-mir-665} ========== sblock10501 (miRBaseHomolog mmu-mir-667) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10501: 0.002 randfold mouseZ6p83_sblock10501: 0.009 #forester mouseZ6p83_sblock10501: 1 #identity: 97.50 sblock10501 CGGTGCTGGTGGAGCAGTGAGCAC #rat_gr402864_libT1S1 24 15 sblock10501 CGGTGCTGGTGGAGCAGT #rat_gr402859_libT1S2 18 14 sblock10501 CGGTGCTGGTGGAGCAGTGAG #rat_gr402862_libT1S2 21 14 sblock10501 CGGTGCTGGTGGAGCAGTGA #rat_gr402861_libT1S1 20 12 sblock10501 CGGTGCTGGTGGAGCAGTGAG #rat_gr402862_libT1S1 21 10 sblock10501 CGGTGCTGGTGGAGCAGTGAGC #rat_gr402863_libT1S1 22 9 sblock10501 CGGTGCTGGTGGAGCAGTGAGCAC #rat_gr402864_libT1S2 24 8 sblock10501 CGGTGCTGGTGGAGCAGTG #rat_gr402860_libT1S1 19 6 sblock10501 CGGTGCTGGTGGAGCAGTGA #rat_gr402861_libT1S2 20 6 sblock10501 CGGTGCTGGTGGAGCAGTGAGC #rat_gr402863_libT1S2 22 5 sblock10501 CGGTGCTGGTGGAGCAGTG #rat_gr402860_libT1S2 19 4 sblock10501 CGGTGCTGGTGGAGCAGT #rat_gr402859_libT1S1 18 3 sblock10501 GCCTCGGTGCTGGTGGAGCA #rat_gr557054_libT1S1 20 1 sblock10501 GCCTCGGTGCTGGTGGAGCAG #rat_gr557055_libT1S1 21 1 sblock10501 GCCTCGGTGCTGGTGGAGCAG #rat_gr557055_libT1S2 21 1 sblock10501 TCGGTGCTGGTGGAGCAGT #rat_gr890807_libT1S1 19 1 sblock10501 CGGTGCTGGTGGAGCAGTGAG #rat_gr402862_libT5S1 21 1 sblock10501 CGGTGCTGGTGGAGCAGTGAGCAC #rat_gr402864_libT3S1 24 1 sblock10501 CGGTGCTGGTGGAGCAGTGAGCAC #rat_gr402864_libT5S1 24 1 sblock10501 GGTGCTGGTGGAGCAGTG #rat_gr621813_libT1S1 18 1 sblock10501 GGTGCTGGTGGAGCAGTGAGCAC #rat_gr621814_libT1S2 23 1 sblock10501 GGTGCTGGTGGAGCAGTGAGCAC #rat_gr621814_libT3S2 23 1 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT1S1 22 1873 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT1S2 22 1730 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT1S2 21 521 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT1S1 21 491 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT1S1 23 474 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT1S1 18 468 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT1S1 20 424 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT1S1 19 418 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT1S2 18 411 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT1S2 20 406 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT1S2 23 402 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT1S2 19 336 sblock10501 GACACCTGCCACCCAGCCCAA #rat_gr492593_libT1S1 21 258 sblock10501 GACACCTGCCACCCAGCCCAA #rat_gr492593_libT1S2 21 176 sblock10501 GACACCTGCCACCCAGCCCAAG #rat_gr492594_libT1S1 22 110 sblock10501 GACACCTGCCACCCAGCCCAAG #rat_gr492594_libT1S2 22 108 sblock10501 GACACCTGCCACCCAGCCCA #rat_gr492592_libT1S1 20 97 sblock10501 GACACCTGCCACCCAGCCCA #rat_gr492592_libT1S2 20 84 sblock10501 GACACCTGCCACCCAGCCC #rat_gr492591_libT1S2 19 80 sblock10501 GACACCTGCCACCCAGCCC #rat_gr492591_libT1S1 19 69 sblock10501 GACACCTGCCACCCAGCC #rat_gr492590_libT1S2 18 33 sblock10501 GACACCTGCCACCCAGCC #rat_gr492590_libT1S1 18 26 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT5S2 22 18 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT4S2 22 16 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT5S1 22 16 sblock10501 ACACCTGCCACCCAGCCCAAG #rat_gr74554_libT1S1 21 10 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT2S1 22 9 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT3S2 22 9 sblock10501 ACACCTGCCACCCAGCCCAA #rat_gr74553_libT1S2 20 8 sblock10501 ACACCTGCCACCCAGCCC #rat_gr74551_libT1S1 18 7 sblock10501 ACACCTGCCACCCAGCCCAA #rat_gr74553_libT1S1 20 7 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT5S2 21 6 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT2S2 22 6 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT3S1 22 6 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT5S1 19 5 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT5S1 21 5 sblock10501 GACACCTGCCACCCAGCCCAAGG #rat_gr492595_libT1S2 23 5 sblock10501 ACCTGCCACCCAGCCCAA #rat_gr107193_libT1S2 18 5 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT5S2 18 4 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT4S1 19 4 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT5S2 20 4 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT4S1 21 4 sblock10501 TGACACCTGCCACCCAGCCCAA #rat_gr931810_libT4S1 22 4 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT5S1 23 4 sblock10501 ACACCTGCCACCCAGCCCAAG #rat_gr74554_libT1S2 21 4 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT4S2 19 3 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT2S1 20 3 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT5S1 20 3 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT2S1 21 3 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT3S1 23 3 sblock10501 GACACCTGCCACCCAGCCCA #rat_gr492592_libT5S2 20 3 sblock10501 GACACCTGCCACCCAGCCCAA #rat_gr492593_libT5S1 21 3 sblock10501 ACACCTGCCACCCAGCCCA #rat_gr74552_libT1S1 19 3 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT4S1 18 2 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT4S2 18 2 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT3S2 19 2 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT5S2 19 2 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT4S1 20 2 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT4S2 21 2 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT5S2 23 2 sblock10501 TGACACCTGCCACCCAGCCCAAGG #rat_gr931812_libT1S1 24 2 sblock10501 TGACACCTGCCACCCAGCCCAAGG #rat_gr931812_libT1S2 24 2 sblock10501 GACACCTGCCACCCAGCCC #rat_gr492591_libT5S1 19 2 sblock10501 GACACCTGCCACCCAGCCCA #rat_gr492592_libT5S1 20 2 sblock10501 GACACCTGCCACCCAGCCCAAG #rat_gr492594_libT5S1 22 2 sblock10501 ACACCTGCCACCCAGCCCA #rat_gr74552_libT1S2 19 2 sblock10501 GTGACACCTGCCACCCAGCCCA #rat_gr643816_libT1S1 22 1 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT2S1 18 1 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT3S2 18 1 sblock10501 TGACACCTGCCACCCAGC #rat_gr931806_libT5S1 18 1 sblock10501 TGACACCTGCCACCCAGCC #rat_gr931807_libT2S1 19 1 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT2S2 20 1 sblock10501 TGACACCTGCCACCCAGCCC #rat_gr931808_libT4S2 20 1 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT2S2 21 1 sblock10501 TGACACCTGCCACCCAGCCCA #rat_gr931809_libT3S2 21 1 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT2S1 23 1 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT3S2 23 1 sblock10501 TGACACCTGCCACCCAGCCCAAG #rat_gr931811_libT4S2 23 1 sblock10501 GACACCTGCCACCCAGCCC #rat_gr492591_libT4S1 19 1 sblock10501 GACACCTGCCACCCAGCCC #rat_gr492591_libT5S2 19 1 sblock10501 GACACCTGCCACCCAGCCCA #rat_gr492592_libT2S1 20 1 sblock10501 GACACCTGCCACCCAGCCCAA #rat_gr492593_libT4S2 21 1 sblock10501 GACACCTGCCACCCAGCCCAA #rat_gr492593_libT5S2 21 1 sblock10501 GACACCTGCCACCCAGCCCAAG #rat_gr492594_libT3S1 22 1 sblock10501 GACACCTGCCACCCAGCCCAAG #rat_gr492594_libT5S2 22 1 sblock10501 GACACCTGCCACCCAGCCCAAGG #rat_gr492595_libT1S1 23 1 sblock10501 GACACCTGCCACCCAGCCCAAGG #rat_gr492595_libT5S2 23 1 sblock10501 ACACCTGCCACCCAGCCC #rat_gr74551_libT1S2 18 1 sblock10501 ACCTGCCACCCAGCCCAA #rat_gr107193_libT1S1 18 1 sblock10501 ----------------CCTTTCCACCTGGTGGGTACTGGCCTCGGTGCTGGTGGAGCAGTGAGCACGCCATACATTATATCTGTGACACCTGCCACCCAGCCCAAGGCCCCTAGGCCCACATACTTCTGGAGGGGA------------ mouseZ6p83 TCTTAGGTTGAAAATCCCTTTCCATCTAGTGGGTACTGGCCTCGGTGCTGGTGGAGCAGTGAGCACGCCATACATTATATCTGTGACACCTGCCACCCAGCCCAAGGCCCCTAGGCCCACAAACTTCTGGAGGGGAGTTTGTCTTGGA ******** ** ********************************************************************************************* ************** sblock10501 ..... ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................ ..... #ENSRNOT00000062104 ENSRNOG00000040351 sblock10501 ((((((((....((((((...(((((.((.((((((((....(((..((((..............)))).)))...))))).))))).))))).....)))))).......)))))))). 0.980 -50.84 # mouseZ6p83 (((.(((..((...((((.(((((....((((((...(((((.((.((((((((....(((..((((..............)))).)))...))))).))))).))))).....)))))).......))))))))).))..))).))) 0.980 -54.04 # #sblock10501 chromosome:6:134400488:134400607:1 Same_strand|Exonic_non-coding|ENSRNOT00000062104|ENSRNOG00000040351 ## ENSRNOG00000040351|miRNA|| #mouseZ6p83 chromosome:12:110958188:110958335:1 Same_strand|Boundary_non-coding|ENSMUST00000102441|ENSMUSG00000076396|miRNA|mmu-mir-667 [Source:miRBase;Acc:MI0004196] ## {MIR: mmu-mir-667} ========== sblock1754 (miRBaseHomolog mmu-mir-295) [miRBaseHomolog_multiarm_DicerOK_randfoldOK] ========== #randfold sblock1754: 0.001 randfold mouse67p87_sblock1754: 0.003 #forester mouse67p87_sblock1754: 0.821109 #identity: 90.91 sblock1754 ACTCAAATGTGGGGCACACTTCT #rat_gr116335_libT5S1 23 1 sblock1754 AAAGTGCTACTACTTTTGGG #rat_gr19914_libT2S2 20 1 sblock1754 AAGTGCTACTACTTTTGG #rat_gr56231_libT1S2 18 1 sblock1754 AAGTGCTACTACTTTTGGGTGTC #rat_gr56232_libT1S1 23 1 sblock1754 ---------------TGTTCATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCCTGTGGGCAC----------------- mouse67p87 CAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTCTCTCCTGTGGGCACCATTCACAGGTCGGCTG ** **** ********************************** * * * ********************* ** ************** sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000058408 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000041454 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000047405 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000058404 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000042276 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000058403 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ----- ---------------------------------------------------------------------------------------- ----- #ENSRNOT00000052029 ENSRNOG00000030940 RGD1560365_predicted sblock1754 ..... ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......... ..... #ENSRNOT00000062151 ENSRNOG00000040398 sblock1754 ((..(((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).)))..)). 1.000 -33.20 # mouse67p87 (((.((((.......(((((((...((.((((((((((.(((((((((..(((((.........))))).))))).)))).)))))))))).)).))))))).........))))..))) 0.996 -45.69 # #sblock1754 chromosome:1:73183800:73183887:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000058400|ENSRNOG00000030940 ## Opposite_strand|Intronic_coding|ENSRNOT00000058408|ENSRNOG00000030940 ## Same_strand|Exonic_non-coding|ENSRNOT00000062151|ENSRNOG00000040398 ## ENSRNOG00000040398|miRNA|| ## ENSRNOG00000030940|protein_coding|RGD1560365_predicted|vomeronasal 2 receptor 36 [Source:RefSeq_peptide;Acc:NP_001092953] #mouse67p87 chromosome:7:3220749:3220868:1 Same_strand|Boundary_non-coding|ENSMUST00000104694|ENSMUSG00000077886|miRNA|mmu-mir-295 [Source:miRBase;Acc:MI0000393] ## {MIR: mmu-mir-295} ========== sblock499 (miRBaseHomolog hsa-mir-935) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK] ========== #randfold sblock499: 0.013 randfold humanZ37p92_sblock499: 0.005 #forester humanZ37p92_sblock499: 0.943687 #identity: 100.00 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT1S1 19 415 sblock499 CAGTTACCGCTTCCGCTACCGCC #rat_gr305530_libT1S2 23 413 sblock499 CAGTTACCGCTTCCGCTACCGCC #rat_gr305530_libT1S1 23 352 sblock499 CAGTTACCGCTTCCGCTACC #rat_gr305527_libT1S1 20 323 sblock499 CAGTTACCGCTTCCGCTACC #rat_gr305527_libT1S2 20 256 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT1S2 19 180 sblock499 CAGTTACCGCTTCCGCTACCGC #rat_gr305529_libT1S1 22 119 sblock499 CAGTTACCGCTTCCGCTACCGC #rat_gr305529_libT1S2 22 98 sblock499 CAGTTACCGCTTCCGCTA #rat_gr305525_libT1S1 18 78 sblock499 CAGTTACCGCTTCCGCTA #rat_gr305525_libT1S2 18 76 sblock499 CCAGTTACCGCTTCCGCTAC #rat_gr335167_libT1S1 20 62 sblock499 CAGTTACCGCTTCCGCTACCG #rat_gr305528_libT1S1 21 58 sblock499 CCAGTTACCGCTTCCGCTACCGCC #rat_gr335171_libT1S1 24 53 sblock499 CAGTTACCGCTTCCGCTACCG #rat_gr305528_libT1S2 21 51 sblock499 CCAGTTACCGCTTCCGCTACCGCC #rat_gr335171_libT1S2 24 40 sblock499 CCAGTTACCGCTTCCGCTACC #rat_gr335168_libT1S1 21 36 sblock499 CCAGTTACCGCTTCCGCTAC #rat_gr335167_libT1S2 20 31 sblock499 CCAGTTACCGCTTCCGCTACC #rat_gr335168_libT1S2 21 20 sblock499 CCAGTTACCGCTTCCGCTA #rat_gr335166_libT1S1 19 16 sblock499 CCAGTTACCGCTTCCGCT #rat_gr335165_libT1S1 18 15 sblock499 CCAGTTACCGCTTCCGCTACCGC #rat_gr335170_libT1S2 23 9 sblock499 CCAGTTACCGCTTCCGCTACCG #rat_gr335169_libT1S1 22 9 sblock499 CCAGTTACCGCTTCCGCTA #rat_gr335166_libT1S2 19 9 sblock499 CCAGTTACCGCTTCCGCT #rat_gr335165_libT1S2 18 9 sblock499 CCAGTTACCGCTTCCGCTACCGC #rat_gr335170_libT1S1 23 8 sblock499 CAGTTACCGCTTCCGCTACCGCC #rat_gr305530_libT5S1 23 5 sblock499 AGTTACCGCTTCCGCTACC #rat_gr202399_libT1S1 19 3 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT2S1 19 3 sblock499 AGTTACCGCTTCCGCTACCGCC #rat_gr202401_libT1S2 22 2 sblock499 CCAGTTACCGCTTCCGCTACCG #rat_gr335169_libT1S2 22 2 sblock499 CAGTTACCGCTTCCGCTACC #rat_gr305527_libT2S1 20 2 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT2S2 19 2 sblock499 CAGTTACCGCTTCCGCTA #rat_gr305525_libT4S2 18 2 sblock499 CCAGTTACCGCTTCCGCT #rat_gr335165_libT4S2 18 2 sblock499 GCTTCCGCTACCGCCGCC #rat_gr577164_libT1S2 18 1 sblock499 AGTTACCGCTTCCGCTACCGCC #rat_gr202401_libT1S1 22 1 sblock499 CAGTTACCGCTTCCGCTACCGCC #rat_gr305530_libT3S1 23 1 sblock499 CAGTTACCGCTTCCGCTACCGCC #rat_gr305530_libT4S2 23 1 sblock499 AGTTACCGCTTCCGCTACCGC #rat_gr202400_libT3S2 21 1 sblock499 CAGTTACCGCTTCCGCTACCGC #rat_gr305529_libT3S2 22 1 sblock499 CAGTTACCGCTTCCGCTACCG #rat_gr305528_libT5S1 21 1 sblock499 CCAGTTACCGCTTCCGCTACCG #rat_gr335169_libT4S2 22 1 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT3S1 19 1 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT5S1 19 1 sblock499 CAGTTACCGCTTCCGCTAC #rat_gr305526_libT5S2 19 1 sblock499 CCAGTTACCGCTTCCGCTAC #rat_gr335167_libT3S2 20 1 sblock499 CCAGTTACCGCTTCCGCTAC #rat_gr335167_libT5S1 20 1 sblock499 CAGTTACCGCTTCCGCTA #rat_gr305525_libT5S1 18 1 sblock499 CATCCTCCGTCTGCCCAGT #rat_gr310197_libT1S1 19 1 sblock499 AGTGGCGGGAGCGGCCCCTCGG #rat_gr200714_libT1S2 22 1 sblock499 AGTGGCGGGAGCGGCCCCTCG #rat_gr200713_libT1S2 21 1 sblock499 AGTGGCGGGAGCGGCCCCTC #rat_gr200712_libT1S1 20 1 sblock499 AGTGGCGGGAGCGGCCCCTC #rat_gr200712_libT1S2 20 1 sblock499 AGTGGCGGGAGCGGCCCC #rat_gr200711_libT1S1 18 1 sblock499 CGGGCGGCAGTGGCGGGAG #rat_gr401152_libT1S2 19 1 sblock499 CTCAAGGCCGGCGGCGGCGCGGGCGGCAGTGGCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGCCGCCGCTCCCGCTCCAGCTCCCGAG humanZ37p92 -------------------------GCAGTGGCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGC------------------------- ************************************************************** sblock499 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000019300 ENSRNOG00000014348 Cacng8 sblock499 ..............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................. #ENSRNOT00000063038 ENSRNOG00000041285 sblock499 (((..(((.((.(((((.((.((((((.(((((((((((((...((.(((............))).))...))))))))))))).))))))))..))))))).)))...))) 1.000 -62.50 # humanZ37p92 ((.(((((((((((((...((.(((............))).))...))))))))))))).)) 0.998 -31.20 # #sblock499 chromosome:1:64068755:64068866:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063038|ENSRNOG00000041285 ## Same_strand|Exonic_coding|ENSRNOT00000019300|ENSRNOG00000014348 ## ENSRNOG00000041285|miRNA|| ## ENSRNOG00000014348|protein_coding|Cacng8|Voltage-dependent calcium channel gamma-8 subunit (Neuronal voltage- gated calcium channel gamma-8 subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q8VHW5] ## {Repeats: GC_rich 1 22 -1 class=Low_complexity,GC_rich 1 9 -1 class=Low_complexity} #humanZ37p92 chromosome:19:59177344:59177495:1 Same_strand|Exonic_coding|ENST00000270458|ENSG00000142408|protein_coding|Voltage-dependent calcium channel gamma-8 subunit (Neuronal voltage-gated calcium channel gamma-8 subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q8WXS5] ## Same_strand|Boundary_non-coding|ENST00000401179|ENSG00000215998|miRNA|hsa-mir-935 [Source:miRBase;Acc:MI0005757] ## {SimpF: oe = 0.98 0 CpG, 1 Eponine, 1 Eponine} ## {MIR: hsa-mir-935} ========== sblock501 (miRBaseHomolog hsa-mir-372) [miRBaseHomolog_multiarm_DicerOK_randfoldOK] ========== #randfold sblock501: 0.002 randfold humanZ38p92_sblock501: 0.003 randfold mouseZ37p92_sblock501: 0.002 #forester humanZ38p92_sblock501: 0.440817 forester mouseZ37p92_sblock501: 0.380006 #identity: 63.46 sblock501 AAGTGCTACTACTTTTGGGTGTC #rat_gr56232_libT1S1 23 1 sblock501 AAAGTGCTACTACTTTTGGG #rat_gr19914_libT2S2 20 1 sblock501 AAGTGCTACTACTTTTGG #rat_gr56231_libT1S2 18 1 sblock501 ACTCAAATGTGGGGCACACTTCT #rat_gr116335_libT5S1 23 1 sblock501 ---------------TGCTCATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCC------------TGTGGGCAC humanZ38p92 -----------------------------GGCCTCAAATGTGGAGCACTATTCTGATGTCCAAGTGGAAAGTGCTGCGACATTTGAGCGT------------------------- mouseZ37p92 GTTTGGATCTAGCGAAATTCCATATAGCCATACTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTGGAAAGTGCTTCC-CTTTTGTGTGTTGCCATGTGGAGAAAGCATCGGAAC ****** * ** * * * ** ********* * * **** * ** sblock501 ..... ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .............. #ENSRNOT00000062160 ENSRNOG00000040407 sblock501 (((((((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)) .))))))). 1.000 -35.70 # humanZ38p92 .((((((((((((.((((((.((((...........)))))))))).)).)))))))).)) 0.997 -23.10 # mouseZ37p92 ((((.(((...((....((((((((.((.((((.(((((.((((((.((.(((..(((....)))))).)).)))))) .))))).)))).)).))))))))...))))).)))) 0.999 -39.70 # #sblock501 chromosome:1:64272841:64272928:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062160|ENSRNOG00000040407 ## ENSRNOG00000040407|miRNA|| #humanZ38p92 chromosome:19:58982925:58983052:1 Same_strand|Boundary_non-coding|ENST00000362225|ENSG00000199095|miRNA|hsa-mir-372 [Source:miRBase;Acc:MI0000780] ## {MIR: hsa-mir-372} #mouseZ37p92 chromosome:7:3220625:3220738:1 Same_strand|Boundary_non-coding|ENSMUST00000104710|ENSMUSG00000077903|miRNA|mmu-mir-294 [Source:miRBase;Acc:MI0000392] ## {MIR: mmu-mir-294} ========== sblock504 (miRBaseHomolog mmu-mir-291b) [miRBaseHomolog_cloningOK_multiarm_DicerOK] ========== #randfold sblock504: 0.031 randfold mouseZ48p92_sblock504: 0.006 #forester mouseZ48p92_sblock504: 0.839525 #identity: 88.79 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT2S1 23 4 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT2S2 23 3 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT5S1 23 2 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT5S2 23 2 sblock504 AAAGTGCATCCATTTTGTTAG #rat_gr19890_libT3S1 21 2 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT1S2 23 1 sblock504 AAAGTGCATCCATTTTGTTAGTC #rat_gr19892_libT3S2 23 1 sblock504 AAAGTGCATCCATTTTGTTAGT #rat_gr19891_libT2S2 22 1 sblock504 AAAGTGCATCCATTTTGTTAG #rat_gr19890_libT1S1 21 1 sblock504 AAAGTGCATCCATTTTGTTAG #rat_gr19890_libT2S2 21 1 sblock504 AAAGTGCATCCATTTTGTTAG #rat_gr19890_libT4S2 21 1 sblock504 AAAGTGCATCCATTTTGTTA #rat_gr19889_libT2S1 20 1 sblock504 AAAGTGCATCCATTTTGTT #rat_gr19888_libT1S2 19 1 sblock504 AAAGTGCATCCATTTTGTT #rat_gr19888_libT3S1 19 1 sblock504 AAAGTGCATCCATTTTGTT #rat_gr19888_libT5S2 19 1 sblock504 AAAGTGCATCCATTTTGT #rat_gr19887_libT2S2 18 1 sblock504 CATCAAAGTGGAGGCCCTCTC #rat_gr308652_libT2S1 21 1 sblock504 CATCAAAGTGGAGGCCCT #rat_gr308651_libT1S1 18 1 sblock504 ------------CGGATCTTGGAAGTTGGAAC--ACAGGGTCCATCAAAGTGGAGGCCCTCTCCGTGGCTTGGCGGGAAAGTGCATCCATTTTGTTAGTCTCTGTGT-------------------CCCGCTGGACTCACC mouseZ48p92 GGAGCTGAGCCTCAGGTCTTGGAAGTTGGAACATACAGTGTCGATCAAAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCAGCTGC- * * **************** **** *** ********************** ****************************** ********** ** **** * * sblock504 ..... ..................>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .................... #ENSRNOT00000062195 ENSRNOG00000040442 sblock504 .((.(((....(((.((.(( ((((((.....(((((((((.((.((.(((((......)))))..)).)).))))))))).....)))))))) )).)))))).))... 0.990 -38.70 # mouseZ48p92 ..(((((((((...(((.(((((.((((..((((((((...(((.(((((((((.((.((.(((((......)))))..)).)).))))))))).)))...))))))))...)))).)))))...))))))).))))).. 0.994 -55.50 # #sblock504 chromosome:1:64274052:64274159:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062195|ENSRNOG00000040442 ## ENSRNOG00000040442|miRNA|| #mouseZ48p92 chromosome:7:3219453:3219592:1 Same_strand|Boundary_non-coding|ENSMUST00000104838|ENSMUSG00000078032|miRNA|mmu-mir-291b [Source:miRBase;Acc:MI0003539] ## {MIR: mmu-mir-291b} ========== sblock5407 (miRBaseHomolog hsa-mir-511-1) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock5407: 0.001 randfold humanZ15p93_sblock5407: 0.001 randfold mouseZ31p93_sblock5407: 0.003 #forester humanZ15p93_sblock5407: 0.618975 forester mouseZ31p93_sblock5407: 0.730564 #identity: 89.67 sblock5407 CATGCCTTTTGCTCTGCACTC #rat_gr312521_libT2S2 21 10 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT2S2 22 9 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT4S2 22 7 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT3S1 19 5 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT2S1 19 4 sblock5407 CATGCCTTTTGCTCTGCACTC #rat_gr312521_libT4S2 21 4 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT2S2 19 3 sblock5407 CATGCCTTTTGCTCTGCACTC #rat_gr312521_libT2S1 21 3 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT3S1 22 3 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT3S2 22 3 sblock5407 CATGCCTTTTGCTCTGCACTCAG #rat_gr312523_libT2S1 23 3 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT3S2 19 2 sblock5407 CATGCCTTTTGCTCTGCACT #rat_gr312520_libT3S2 20 2 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT2S1 22 2 sblock5407 CATGCCTTTTGCTCTGCA #rat_gr312518_libT3S1 18 1 sblock5407 CATGCCTTTTGCTCTGCA #rat_gr312518_libT4S2 18 1 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT4S1 19 1 sblock5407 CATGCCTTTTGCTCTGCAC #rat_gr312519_libT4S2 19 1 sblock5407 CATGCCTTTTGCTCTGCACT #rat_gr312520_libT2S1 20 1 sblock5407 CATGCCTTTTGCTCTGCACT #rat_gr312520_libT5S1 20 1 sblock5407 CATGCCTTTTGCTCTGCACTC #rat_gr312521_libT3S2 21 1 sblock5407 CATGCCTTTTGCTCTGCACTC #rat_gr312521_libT4S1 21 1 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT1S1 22 1 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT1S2 22 1 sblock5407 CATGCCTTTTGCTCTGCACTCA #rat_gr312522_libT5S2 22 1 sblock5407 ATGCCTTTTGCTCTGCAC #rat_gr230886_libT4S2 18 1 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT2S2 21 61 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT2S1 21 50 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT3S1 21 40 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT3S2 21 38 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT2S2 19 32 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT4S2 21 23 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT3S1 19 19 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT2S1 19 17 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT3S2 19 13 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT4S2 19 13 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT2S2 22 13 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT2S2 20 12 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT3S2 20 9 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT3S2 22 9 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT2S2 21 8 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT4S1 21 7 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT2S1 22 7 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT1S2 21 6 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT2S2 18 5 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT3S2 18 5 sblock5407 ATGTGTAGCAAAAGACAGGA #rat_gr238087_libT4S2 20 5 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT3S2 21 5 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT3S1 20 4 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT5S1 21 4 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT3S1 22 4 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT4S1 21 4 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT4S2 21 4 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT2S1 18 3 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT4S1 19 3 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT2S1 20 3 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT1S1 21 3 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT4S2 22 3 sblock5407 ATGTGTAGCAAAAGACAGGA #rat_gr238087_libT2S1 20 3 sblock5407 ATGTGTAGCAAAAGACAGGA #rat_gr238087_libT2S2 20 3 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT3S1 21 3 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT1S1 18 2 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT3S1 18 2 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT5S1 18 2 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT5S1 19 2 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT1S2 22 2 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT4S1 22 2 sblock5407 ATGTGTAGCAAAAGACAG #rat_gr238085_libT2S2 18 2 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT2S1 21 2 sblock5407 AATGTGTAGCAAAAGACA #rat_gr64248_libT4S1 18 1 sblock5407 AATGTGTAGCAAAAGACAG #rat_gr64249_libT1S2 19 1 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT4S2 20 1 sblock5407 AATGTGTAGCAAAAGACAGG #rat_gr64250_libT5S1 20 1 sblock5407 AATGTGTAGCAAAAGACAGGA #rat_gr64251_libT5S2 21 1 sblock5407 AATGTGTAGCAAAAGACAGGAT #rat_gr64252_libT1S1 22 1 sblock5407 AATGTGTAGCAAAAGACAGGATG #rat_gr64253_libT2S1 23 1 sblock5407 AATGTGTAGCAAAAGACAGGATG #rat_gr64253_libT3S1 23 1 sblock5407 ATGTGTAGCAAAAGACAG #rat_gr238085_libT2S1 18 1 sblock5407 ATGTGTAGCAAAAGACAG #rat_gr238085_libT3S2 18 1 sblock5407 ATGTGTAGCAAAAGACAGG #rat_gr238086_libT3S1 19 1 sblock5407 ATGTGTAGCAAAAGACAGG #rat_gr238086_libT3S2 19 1 sblock5407 ATGTGTAGCAAAAGACAGG #rat_gr238086_libT4S2 19 1 sblock5407 ATGTGTAGCAAAAGACAGGA #rat_gr238087_libT3S1 20 1 sblock5407 ATGTGTAGCAAAAGACAGGA #rat_gr238087_libT3S2 20 1 sblock5407 ATGTGTAGCAAAAGACAGGAT #rat_gr238088_libT1S2 21 1 sblock5407 AATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTACATAATCATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATT humanZ15p93 ------------TCGTGTCTTTTGCTCTGCAGTCAGTAAATATTTTTTTGTGAATGTGTAGCAAAAGACAGAA------------ mouseZ31p93 -----------ACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGA------------ * ** ************* ****** *** * ************************* * sblock5407 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000024736 ENSRNOG00000018251 NP_001099593.1 sblock5407 .........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....... #ENSRNOT00000063072 ENSRNOG00000041319 sblock5407 ....(((.((((((.((.((((((((..((((....((((........))))...)))))))))))).)))).)))).))).... 0.990 -28.40 # humanZ15p93 ((.(((((((((((..(((.(((.((((......))))))).)))..))))))))))))). 1.000 -21.70 # mouseZ31p93 .((.((.((((((((..(((.(((.(((((....)))))))).)))..)))))))).)))). 1.000 -19.20 # #sblock5407 chromosome:17:88441489:88441573:1 Same_strand|Exonic_non-coding|ENSRNOT00000063072|ENSRNOG00000041319 ## Same_strand|Intronic_coding|ENSRNOT00000024736|ENSRNOG00000018251 ## ENSRNOG00000041319|miRNA|| ## ENSRNOG00000018251|protein_coding|NP_001099593.1|mannose receptor, C type 1 [Source:RefSeq_peptide;Acc:NP_001099593] #humanZ15p93 chromosome:10:17927094:17927218:1 Same_strand|Intronic_coding|ENST00000331429|ENSG00000183748|protein_coding|Macrophage mannose receptor 1-like protein 1 Precursor (C-type lectin domain family 13 member D-like) [Source:UniProtKB/Swiss-Prot;Acc:Q5VSK2] ## Same_strand|Boundary_non-coding|ENST00000385202|ENSG00000207937|miRNA|hsa-mir-511-2 [Source:miRBase;Acc:MI0003128] ## {MIR: hsa-mir-511-1} #mouseZ31p93 chromosome:2:14182606:14182730:1 Same_strand|Intronic_coding|ENSMUST00000028045|ENSMUSG00000026712|protein_coding|mannose receptor, C type 1 Gene [Source:MGI (curated);Acc:Mrc1-001] ## Same_strand|Boundary_non-coding|ENSMUST00000104704|ENSMUSG00000077897|miRNA|mmu-mir-511 [Source:miRBase;Acc:MI0005554] ## {MIR: mmu-mir-511} ========== sblock8357 (miRBaseHomolog hsa-mir-653) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock8357: 0.003 randfold humanZ24p96_sblock8357: 0.001 randfold mouseZ58p96_sblock8357: 0.001 #forester humanZ24p96_sblock8357: 0.807638 forester mouseZ58p96_sblock8357: 0.802546 #identity: 91.24 sblock8357 TTCACTGGGGTTTGTTTCACTA #rat_gr1111397_libT5S2 22 8 sblock8357 TTCACTGGGGTTTGTTTCACTA #rat_gr1111397_libT5S1 22 7 sblock8357 TTCACTGGGGTTTGTTTCA #rat_gr1111394_libT5S2 19 7 sblock8357 TTCACTGGGGTTTGTTTCACT #rat_gr1111396_libT1S1 21 5 sblock8357 TTCACTGGGGTTTGTTTCACT #rat_gr1111396_libT1S2 21 5 sblock8357 TTCACTGGGGTTTGTTTCACT #rat_gr1111396_libT5S1 21 5 sblock8357 TTCACTGGGGTTTGTTTCACT #rat_gr1111396_libT5S2 21 3 sblock8357 TTCACTGGGGTTTGTTTCACTAT #rat_gr1111398_libT5S1 23 2 sblock8357 TTCACTGGGGTTTGTTTCAC #rat_gr1111395_libT5S1 20 2 sblock8357 TTCACTGGGGTTTGTTTCA #rat_gr1111394_libT3S1 19 2 sblock8357 TTCACTGGGGTTTGTTTCA #rat_gr1111394_libT5S1 19 2 sblock8357 TTCACTGGGGTTTGTTTCACTAT #rat_gr1111398_libT1S2 23 1 sblock8357 TCACTGGGGTTTGTTTCACT #rat_gr815159_libT5S1 20 1 sblock8357 TTCACTGGGGTTTGTTTCAC #rat_gr1111395_libT1S1 20 1 sblock8357 TTCACTGGGGTTTGTTTCAC #rat_gr1111395_libT1S2 20 1 sblock8357 TTCACTGGGGTTTGTTTCAC #rat_gr1111395_libT5S2 20 1 sblock8357 TTCACTGGGGTTTGTTTCA #rat_gr1111394_libT1S1 19 1 sblock8357 TTCACTGGGGTTTGTTTCA #rat_gr1111394_libT1S2 19 1 sblock8357 TTCACTGGGGTTTGTTTC #rat_gr1111393_libT1S2 18 1 sblock8357 TTCACTGGGGTTTGTTTC #rat_gr1111393_libT5S2 18 1 sblock8357 TTGAAACATTCTCTACTGAACC #rat_gr1131192_libT5S1 22 7 sblock8357 TTGAAACATTCTCTACTGA #rat_gr1131191_libT5S2 19 3 sblock8357 TTGAAACATTCTCTACTGAACC #rat_gr1131192_libT1S1 22 2 sblock8357 TTGAAACATTCTCTACTGAACC #rat_gr1131192_libT1S2 22 2 sblock8357 TTGAAACATTCTCTACTGAACC #rat_gr1131192_libT5S2 22 2 sblock8357 TTGAAACATTCTCTACTGA #rat_gr1131191_libT1S2 19 2 sblock8357 TTGAAACATTCTCTACTG #rat_gr1131190_libT1S1 18 2 sblock8357 TTGAAACATTCTCTACTG #rat_gr1131190_libT1S2 18 2 sblock8357 TTGAAACATTCTCTACTGAACCA #rat_gr1131193_libT5S1 23 1 sblock8357 TGAAACATTCTCTACTGAACC #rat_gr922126_libT5S1 21 1 sblock8357 TGAAACATTCTCTACTGAAC #rat_gr922125_libT5S2 20 1 sblock8357 TTGAAACATTCTCTACTGA #rat_gr1131191_libT5S1 19 1 sblock8357 --------------AGGTTCTGATTTTTCATTCTTTCAGTGTTGAAACATTCTCTACTGAACCAAGCTCCAAAACAAGTTCACTGGGGTTTGTTTCACTATTGCAAGAATTGCTAAGTATGAAGCTG--------------- humanZ24p96 TCATCTGACAACAGAGGTTCTAATTTTTCATTCCTTCAGTGTTGAAACAATCTCTACTGAACC-AGCTTCAAA-CAAGTTCACTGGAGTTTGTTTCAATATTGCAAGAA-TGATAAGATGGAAGCTACTTTCATCAGCATGA mouseZ58p96 ----------------------------CATTCTTTCAGTGTTGAAACAATCTCTACTGAACCAAGCTCCAAAGCGAGTTCACTGGAGTTTGTTTCAGTATTGCAGGAG-TG------------------------------ ***** *************** ************* **** **** * ********** ********** ******* ** ** sblock8357 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000013910 ENSRNOG00000010053 Calcr sblock8357 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000013937 ENSRNOG00000010053 Calcr sblock8357 ..... ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... #ENSRNOT00000054572 ENSRNOG00000036462 sblock8357 ((.(((..((((..(((((((.(((((.(((((((..(((((.(((((...............))))).)))))..))))))).))))).))))).))..))))..))).)). 0.980 -31.76 # humanZ24p96 ((((((((....((((.(((((.(((.((((((...((((((((((((((.(((((.(((((. ......... ...))))).))))).))))))))))))))...))) ))).))).))))).)).))....)))).)))) 0.999 -47.62 # mouseZ58p96 (((((((.((((((((((((((.(((((.(((((...(((....)))..))))).))))).)))))))))))))).))))) )) 1.000 -35.40 # #sblock8357 chromosome:4:28517611:28517723:-1 Same_strand|Intronic_coding|ENSRNOT00000013937|ENSRNOG00000010053 ## Same_strand|Exonic_non-coding|ENSRNOT00000054572|ENSRNOG00000036462 ## ENSRNOG00000036462|miRNA|| ## ENSRNOG00000010053|protein_coding|Calcr|Calcitonin receptor precursor (CT-R) (C1A/C1B). [Source:UniProtKB/Swiss-Prot;Acc:P32214] #humanZ24p96 chromosome:7:92949991:92950129:-1 Same_strand|Intronic_coding|ENST00000359558|ENSG00000004948|protein_coding|Calcitonin receptor Precursor (CT-R) [Source:UniProtKB/Swiss-Prot;Acc:P30988] ## Same_strand|Boundary_non-coding|ENST00000385279|ENSG00000208014|miRNA|hsa-mir-653 [Source:miRBase;Acc:MI0003674] ## {MIR: hsa-mir-653} #mouseZ58p96 chromosome:6:3671303:3671385:-1 Same_strand|Intronic_coding|ENSMUST00000115622|ENSMUSG00000023964|protein_coding|calcitonin receptor Gene [Source:MGI Symbol;Acc:MGI:101950] ## Same_strand|Exonic_non-coding|ENSMUST00000102402|ENSMUSG00000076357|miRNA|mmu-mir-653 [Source:miRBase;Acc:MI0005557] ## {MIR: mmu-mir-653} ========== sblock910 (miRBaseHomolog mmu-mir-675) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock910: 0.001 randfold mouseZ14p97_sblock910: 0.001 #forester mouseZ14p97_sblock910: 0.95038 #identity: 98.75 sblock910 CGCTCAGTCCCTGGGTCTGGCATGAC #rat_gr395158_libT2S1 26 1 sblock910 TGTATGCCCTAACCGCTCAGTC #rat_gr1076937_libT2S2 22 37 sblock910 TGTATGCCCTAACCGCTCAGTC #rat_gr1076937_libT2S1 22 33 sblock910 TGTATGCCCTAACCGCTCAG #rat_gr1076935_libT2S1 20 22 sblock910 TGTATGCCCTAACCGCTCAGT #rat_gr1076936_libT2S1 21 20 sblock910 CTGTATGCCCTAACCGCTCAGTC #rat_gr453877_libT2S1 23 19 sblock910 TGTATGCCCTAACCGCTCAGT #rat_gr1076936_libT2S2 21 19 sblock910 CTGTATGCCCTAACCGCTCAGTC #rat_gr453877_libT2S2 23 16 sblock910 CTGTATGCCCTAACCGCT #rat_gr453872_libT2S2 18 15 sblock910 CTGTATGCCCTAACCGCTCAGT #rat_gr453876_libT2S1 22 11 sblock910 CTGTATGCCCTAACCGCTCAGT #rat_gr453876_libT2S2 22 10 sblock910 TGTATGCCCTAACCGCTCAG #rat_gr1076935_libT2S2 20 10 sblock910 CTGTATGCCCTAACCGCTCAG #rat_gr453875_libT2S1 21 10 sblock910 TGTATGCCCTAACCGCTC #rat_gr1076933_libT2S2 18 10 sblock910 TGTATGCCCTAACCGCTCA #rat_gr1076934_libT2S2 19 9 sblock910 CTGTATGCCCTAACCGCTCA #rat_gr453874_libT2S1 20 9 sblock910 TGTATGCCCTAACCGCTCA #rat_gr1076934_libT2S1 19 8 sblock910 CTGTATGCCCTAACCGCTCA #rat_gr453874_libT2S2 20 8 sblock910 CTGTATGCCCTAACCGCTC #rat_gr453873_libT2S2 19 8 sblock910 TGTATGCCCTAACCGCTCAGTC #rat_gr1076937_libT4S1 22 7 sblock910 CTGTATGCCCTAACCGCTCAG #rat_gr453875_libT2S2 21 6 sblock910 CTGTATGCCCTAACCGCTCAG #rat_gr453875_libT4S2 21 4 sblock910 TGTATGCCCTAACCGCTCAGTC #rat_gr1076937_libT4S2 22 3 sblock910 TGTATGCCCTAACCGCTC #rat_gr1076933_libT2S1 18 3 sblock910 CTGTATGCCCTAACCGCTC #rat_gr453873_libT2S1 19 3 sblock910 TGTATGCCCTAACCGCTCAGT #rat_gr1076936_libT4S1 21 2 sblock910 CTGTATGCCCTAACCGCTCA #rat_gr453874_libT4S1 20 2 sblock910 TGTATGCCCTAACCGCTCAGTCC #rat_gr1076938_libT2S1 23 1 sblock910 CTGTATGCCCTAACCGCTCAGTCC #rat_gr453878_libT2S1 24 1 sblock910 CTGTATGCCCTAACCGCTCAGTCC #rat_gr453878_libT2S2 24 1 sblock910 TGTATGCCCTAACCGCTCAGTC #rat_gr1076937_libT1S1 22 1 sblock910 CTGTATGCCCTAACCGCTCAGTC #rat_gr453877_libT4S1 23 1 sblock910 GTATGCCCTAACCGCTCAGT #rat_gr631380_libT2S2 20 1 sblock910 CTGTATGCCCTAACCGCTCAGT #rat_gr453876_libT4S2 22 1 sblock910 TGTATGCCCTAACCGCTCAG #rat_gr1076935_libT3S1 20 1 sblock910 CTGTATGCCCTAACCGCTCAG #rat_gr453875_libT4S1 21 1 sblock910 TGTATGCCCTAACCGCTCA #rat_gr1076934_libT4S1 19 1 sblock910 CTGTATGCCCTAACCGCTC #rat_gr453873_libT1S2 19 1 sblock910 CTGTATGCCCTAACCGCT #rat_gr453872_libT2S1 18 1 sblock910 TGGTGCGGAAAGGGCCCACAGTG #rat_gr1066512_libT2S1 23 1 sblock910 TGGTGCGGAAAGGGCCCACAG #rat_gr1066511_libT4S1 21 1 sblock910 TGGTGCGGAAAGGGCCCACA #rat_gr1066510_libT2S1 20 1 sblock910 TGGTGCGGAAAGGGCCCA #rat_gr1066509_libT2S1 18 1 sblock910 TTCCCATGAGGCACTGCGGCCCAGGGACTGGTGCGGAAAGGGCCCACAGTGGACTTGGTGCACTGTATGCCCTAACCGCTCAGTCCCTGGGTCTGGCATGACAGACAGAAC mouseZ14p97 -----------------GGCCCAGGGACTGGTGCGGAAAGGGCCCACAGTGGACTTGGTACACTGTATGCCCTAACCGCTCAGTCCCTGGGTCTGGC-------------- ****************************************** ************************************* sblock910 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027588 ENSRNOG00000020367 sblock910 ...................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................. #ENSRNOT00000062103 ENSRNOG00000040350 sblock910 (((...((...((.(((((((((((((((((.((((..(((((..((((((.((...)).))))))..)))))..))))))))))))))))))..))))).))....))). 0.770 -58.80 # mouseZ14p97 ((((((((((((((.((((..(((((..((((((.........))))))..)))))..)))))))))))))))))).... 1.000 -54.90 # #sblock910 chromosome:1:202824489:202824599:-1 Same_strand|Boundary_non-coding|ENSRNOT00000062103|ENSRNOG00000040350 ## Same_strand|Exonic_non-coding|ENSRNOT00000062103|ENSRNOG00000040350 ## ENSRNOG00000020367|pseudogene|| ## ENSRNOG00000040350|miRNA|| #mouseZ14p97 chromosome:7:149762970:149763049:-1 Same_strand|Exonic_non-coding|ENSMUST00000000031|ENSMUSG00000000031|protein_coding|H19 fetal liver mRNA Gene [Source:MGI Symbol;Acc:MGI:95891] ## {MIR: mmu-mir-675} ========== block398376 (miRBaseHomolog hsa-mir-328) [miRBaseHomolog_cloningHIGH_randfoldOK] ========== #randfold block398376: 0.003 randfold human144p18_block398376: 0.001 randfold mouseZ14p18_block398376: 0.001 #forester human144p18_block398376: 0.366342 forester mouseZ14p18_block398376: 0.32239 #identity: 74.71 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT1S2 20 1651 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT1S1 20 873 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT1S1 18 373 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT1S2 18 311 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT5S1 20 191 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT1S1 19 190 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT1S2 19 181 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT4S2 20 156 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT3S1 20 138 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT4S1 20 135 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT5S2 20 114 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT3S2 20 78 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT2S2 20 67 block398376 CTGGCCCTCTCTGCCCTACC #rat_gr448806_libT2S1 20 49 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT5S1 18 38 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT4S2 18 37 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT5S1 19 37 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT1S2 21 34 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT1S1 21 31 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT4S2 19 30 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT3S2 18 28 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT3S1 19 27 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT3S1 18 25 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT4S1 19 23 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT5S2 19 23 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT3S2 19 21 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT5S2 18 18 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT2S2 19 14 block398376 CTGGCCCTCTCTGCCCTAC #rat_gr448805_libT2S1 19 12 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT4S1 18 11 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT2S1 18 10 block398376 CTGGCCCTCTCTGCCCTA #rat_gr448804_libT2S2 18 9 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT2S2 21 6 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT5S2 21 6 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT3S2 21 5 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT4S2 21 5 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT3S1 21 4 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT5S1 21 4 block398376 CTGGCCCTCTCTGCCCTACCCCC #rat_gr448809_libT1S2 23 4 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT4S1 21 3 block398376 CTGGCCCTCTCTGCCCTACCCC #rat_gr448808_libT1S1 22 3 block398376 CTGGCCCTCTCTGCCCTACCCC #rat_gr448808_libT1S2 22 3 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT1S1 19 3 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT1S2 19 3 block398376 GCTGGCCCTCTCTGCCCT #rat_gr573990_libT1S1 18 2 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT3S1 19 2 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT3S2 19 2 block398376 GGCCCTCTCTGCCCTACC #rat_gr596111_libT5S2 18 2 block398376 GCTGGCCCTCTCTGCCCT #rat_gr573990_libT5S1 18 1 block398376 CTGGCCCTCTCTGCCCTACCC #rat_gr448807_libT2S1 21 1 block398376 CTGGCCCTCTCTGCCCTACCCC #rat_gr448808_libT4S2 22 1 block398376 CTGGCCCTCTCTGCCCTACCCC #rat_gr448808_libT5S1 22 1 block398376 CTGGCCCTCTCTGCCCTACCCC #rat_gr448808_libT5S2 22 1 block398376 CTGGCCCTCTCTGCCCTACCCCC #rat_gr448809_libT5S1 23 1 block398376 CTGGCCCTCTCTGCCCTACCCCCC #rat_gr448810_libT5S1 24 1 block398376 CTGGCCCTCTCTGCCCTACCCCCC #rat_gr448810_libT5S2 24 1 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT2S1 19 1 block398376 TGGCCCTCTCTGCCCTACC #rat_gr1011766_libT5S1 19 1 block398376 GGCCCTCTCTGCCCTACC #rat_gr596111_libT1S1 18 1 block398376 GGCCCTCTCTGCCCTACC #rat_gr596111_libT1S2 18 1 block398376 --GGAGGAGGGGGAGGGAGGGAAG----------------------------GGGCGAGGGAGGGGCTAGAAGGTAGTCGGCAGATGCAACCATTAGGCTGGCTGGCCCTCTCTGCCCTACCCCCCACCTCACTAACCCGTG----GCC---TCC------ human144p18 TGGCCGAAGAACATGGGTGAGAAGTCCTGGGCTGTCTCAGAGCCTGGAGTGGGGGGGCAGGAGGGGCT--CAGGGAGAAAGTGCATACAGCCC---------CTGGCCCTCTCTGCCCTTCCGTCCCCTGCTCTTGGCCATGCTGTGCCCAGTCCAGGCCA mouseZ14p18 --GGAGGAGGGGGAGGGAGGGAGGGAGGG----------------AGGGAGAGAGAGAGGGAGGAGCTAGAAGGTAGACGGCAGATGCAACCATTAGGCTGGCTGGCCCTCGCTGCCCTACCCCCCACCTCACTAACCCGTG----GCC---TCC------ * * ** *** * ** * * * * ***** *** *** ** * ** ** ** ********* ******* ** ** * * ** ** ** *** *** block398376 (((((.(((..((.((((.... (((...(((.(((((.(((.((((((((((.((((....))))..)))))))).)).)))..))))).)))))).)))).))..)))... .)) ))) 0.950 -61.40 # human144p18 .((((...((...((((((...(((....(((((....(((((..((..(((..((((((..(((((. (((((.......((.....)))) ))))))))..))))))..)))..))..))))))))))..))).)))))).))..)))). 0.969 -79.61 # mouseZ14p18 (((((.(((..((.((((..(((.((( ((((..((...(((((...((((((..........((....))..........))))))..))))).)).)))).)))))).)))).))..)))... .)) ))) 0.902 -64.65 # #block398376 chromosome:14:46393625:46393742:1 intergenic #human144p18 chromosome:16:65793694:65793843:-1 Opposite_strand|Boundary_coding|ENST00000393995|ENSG00000102890|protein_coding|Engulfment and cell motility protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q96BJ8] ## Same_strand|Boundary_non-coding|ENST00000385213|ENSG00000207948|miRNA|hsa-mir-328 [Source:miRBase;Acc:MI0000804] ## {MIR: hsa-mir-328} #mouseZ14p18 chromosome:5:65038872:65039001:-1 intergenic ## {Repeats: dust 0 class=dust,trf 0 class=trf,(TCCC)n -1 class=Simple_repeat} ========== sblock12742 (miRBaseHomolog hsa-mir-507) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12742: 0.001 randfold humanZ3p87_sblock12742: 0.002 #forester humanZ3p87_sblock12742: 0.509497 #identity: 64.29 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT4S1 21 17 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT5S1 20 14 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT5S1 22 13 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT4S2 21 12 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT5S1 21 12 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT4S1 22 11 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT4S2 22 10 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT5S2 22 10 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT5S2 21 8 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT4S1 20 6 sblock12742 ATTGGTACTTCTTTAAGT #rat_gr244975_libT4S1 18 6 sblock12742 ATTGGTACTTCTTTAAGTG #rat_gr244976_libT5S1 19 5 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT5S2 20 4 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT4S2 20 3 sblock12742 ATTGGTACTTCTTTAAGTG #rat_gr244976_libT4S1 19 3 sblock12742 ATTGGTACTTCTTTAAGT #rat_gr244975_libT4S2 18 3 sblock12742 TTGGTACTTCTTTAAGTGAGA #rat_gr1145891_libT5S1 21 2 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT2S1 22 2 sblock12742 TTGGTACTTCTTTAAGTGAG #rat_gr1145890_libT4S2 20 2 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT2S2 21 2 sblock12742 ATTGGTACTTCTTTAAGTG #rat_gr244976_libT4S2 19 2 sblock12742 ATTGGTACTTCTTTAAGTG #rat_gr244976_libT5S2 19 2 sblock12742 ATTGGTACTTCTTTAAGT #rat_gr244975_libT1S2 18 2 sblock12742 ATTGGTACTTCTTTAAGT #rat_gr244975_libT5S1 18 2 sblock12742 ATTGGTACTTCTTTAAGTGAGAT #rat_gr244980_libT4S2 23 1 sblock12742 TTGGTACTTCTTTAAGTGAGA #rat_gr1145891_libT4S2 21 1 sblock12742 TTGGTACTTCTTTAAGTGAGA #rat_gr1145891_libT5S2 21 1 sblock12742 ATTGGTACTTCTTTAAGTGAGA #rat_gr244979_libT3S1 22 1 sblock12742 TTGGTACTTCTTTAAGTGAG #rat_gr1145890_libT4S1 20 1 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT1S1 21 1 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT2S1 21 1 sblock12742 ATTGGTACTTCTTTAAGTGAG #rat_gr244978_libT3S1 21 1 sblock12742 TGGTACTTCTTTAAGTGA #rat_gr1061885_libT5S1 18 1 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT1S2 20 1 sblock12742 ATTGGTACTTCTTTAAGTGA #rat_gr244977_libT2S2 20 1 sblock12742 TTGGTACTTCTTTAAGTG #rat_gr1145889_libT4S2 18 1 sblock12742 ATTGGTACTTCTTTAAGTG #rat_gr244976_libT1S1 19 1 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT5S1 22 92 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT4S1 22 60 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT4S2 22 53 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT5S2 22 29 sblock12742 TCACTTCAGGATGTACCACCCAT #rat_gr815436_libT4S2 23 24 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT4S2 21 23 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT5S2 21 23 sblock12742 TCACTTCAGGATGTACCACCCAT #rat_gr815436_libT5S1 23 17 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT5S1 21 17 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT4S1 21 16 sblock12742 TCACTTCAGGATGTACCACCCAT #rat_gr815436_libT4S1 23 15 sblock12742 TCACTTCAGGATGTACCA #rat_gr815431_libT4S2 18 6 sblock12742 TCACTTCAGGATGTACCACCCAT #rat_gr815436_libT5S2 23 5 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT2S2 22 4 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT4S1 20 4 sblock12742 TCACTTCAGGATGTACCA #rat_gr815431_libT5S2 18 4 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT1S2 22 3 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT3S2 22 3 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT4S2 20 3 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT5S1 20 3 sblock12742 TCACTTCAGGATGTACCAC #rat_gr815432_libT4S1 19 3 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT2S1 22 2 sblock12742 TCACTTCAGGATGTACCAC #rat_gr815432_libT4S2 19 2 sblock12742 TCACTTCAGGATGTACCAC #rat_gr815432_libT5S1 19 2 sblock12742 TCACTTCAGGATGTACCA #rat_gr815431_libT5S1 18 2 sblock12742 TCACTTCAGGATGTACCACCCAT #rat_gr815436_libT2S1 23 1 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT1S1 22 1 sblock12742 TCACTTCAGGATGTACCACCCA #rat_gr815435_libT3S1 22 1 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT1S1 21 1 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT2S1 21 1 sblock12742 TCACTTCAGGATGTACCACCC #rat_gr815434_libT3S2 21 1 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT1S1 20 1 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT2S1 20 1 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT3S1 20 1 sblock12742 TCACTTCAGGATGTACCACC #rat_gr815433_libT5S2 20 1 sblock12742 TCACTTCAGGATGTACCAC #rat_gr815432_libT5S2 19 1 sblock12742 TCACTTCAGGATGTACCA #rat_gr815431_libT1S2 18 1 sblock12742 TCACTTCAGGATGTACCA #rat_gr815431_libT4S1 18 1 sblock12742 ----------------CAGTCACATAGTGTGTGATGTATCACTTCAGGATGTACCACCCATTTAATGGAAAATATGATTGGTACTTCTTTAAGTGAGATAATGCAC--------------------ACTAACTG humanZ3p87 GAGTGAGGGACATTTTCCGCTGTGCTGTGTGTAGTGCTTCACTTCAAGAAGTGCCATGCATGTGTCTAGAAATATGTTTTGCACCTTTTGGAGTGAAATAATGCACAACAGATACAAGTCAGAACTACCCACTC * * ****** ** ******** ** ** *** *** * ******* ** * ** * ** ***** ********* ** *** sblock12742 ((((....(((((((((.(((.((((((.((((.((((((..(((............)))..)))))).)))).)))))).))).))))) )))))))) 0.990 -33.90 # humanZ3p87 (((((.((.....(((..(((((((((((((((.((.((((((((((((.((((...((((((........))))))...)))).)))))))))))).)).)))))).))).)))).))..)))...))))))) 0.928 -49.40 # #sblock12742 chromosome:X:154169434:154169531:-1 intergenic #humanZ3p87 chromosome:X:146120175:146120308:-1 Same_strand|Boundary_non-coding|ENST00000385234|ENSG00000207969|miRNA|hsa-mir-507 [Source:miRBase;Acc:MI0003194] ## {MIR: hsa-mir-507}