confident homolog loci of miRBase miRNAs
miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK (5 loci)
mmu-mir-667
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-667 5arm | 59 | 53 | 0 | 0 | 1 | 1 | 0 | 0 | 2 | 0 |
| mmu-mir-667 3arm | 4740 | 4314 | 19 | 8 | 10 | 14 | 17 | 26 | 43 | 43 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-667 5arm | 0.002 | 0.002 | 0 | 0 | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 |
| mmu-mir-667 3arm | 0.158 | 0.188 | 0.001 | 0.000 | 0.000 | 0.001 | 0.001 | 0.001 | 0.003 | 0.003 |
sblock10501 (miRBaseHomolog mmu-mir-667) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-667 | 0.002 | no | no | 0.63/0.74 | 18/24/0.79 | 0.0 0.0 | 2.9 0.0 | 99 3603 | 0 0 | 5 10 | 0 0 | 26 31 | 1 2 | 5arm 3arm | 1 1 | nd nd | 0.28 0.27 | 4 3 | 9350 | 10 | 1 | 1 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------------------------------GACACCU--------------------------------------------------------- | 8118 | novel | |||||||||
| seed | -------------------------------------------------------------------------------------ACACCUG-------------------------------------------------------- | 1067 | novel | |||||||||
| seed | -------------------------------------------GGUGCUG-------------------------------------------------------------------------------------------------- | 109 | novel | |||||||||
| seed | --------------------------------------------------------------------------------------CACCUGC------------------------------------------------------- | 42 | novel | |||||||||
| seed | ----------------------------------------------------------------------------------------CCUGCCA----------------------------------------------------- | 6 | novel | |||||||||
| seed | ---------------------------------------CCUCGGU------------------------------------------------------------------------------------------------------ | 3 | novel | |||||||||
| seed | --------------------------------------------GUGCUGG------------------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------CGGUGCU--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------UGACACC---------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCCCAA------------------------------------------- | 22 | 1873 | 1730 | 9 | 6 | 6 | 9 | 4 | 16 | 16 | 18 | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCCCA-------------------------------------------- | 21 | 491 | 521 | 3 | 1 | - | 1 | 4 | 2 | 5 | 6 | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGC----------------------------------------------- | 18 | 468 | 411 | 1 | - | - | 1 | 2 | 2 | 1 | 4 | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCCCAAG------------------------------------------ | 23 | 474 | 402 | 1 | - | 3 | 1 | - | 1 | 4 | 2 | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCCC--------------------------------------------- | 20 | 424 | 406 | 3 | 1 | - | - | 2 | 1 | 3 | 4 | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCC---------------------------------------------- | 19 | 418 | 336 | 1 | - | - | 2 | 4 | 3 | 5 | 2 | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCCCAA------------------------------------------- | 21 | 258 | 176 | - | - | - | - | - | 1 | 3 | 1 | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCCCAAG------------------------------------------ | 22 | 110 | 108 | - | - | 1 | - | - | - | 2 | 1 | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCCCA-------------------------------------------- | 20 | 97 | 84 | 1 | - | - | - | - | - | 2 | 3 | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCCC--------------------------------------------- | 19 | 69 | 80 | - | - | - | - | 1 | - | 2 | 1 | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCC---------------------------------------------- | 18 | 26 | 33 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGTGAG------------------------------------------------------------------------------------- | 21 | 10 | 14 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGTGAGCAC---------------------------------------------------------------------------------- | 24 | 15 | 8 | - | - | 1 | - | - | - | 1 | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGTGA-------------------------------------------------------------------------------------- | 20 | 12 | 6 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGT---------------------------------------------------------------------------------------- | 18 | 3 | 14 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------ACACCTGCCACCCAGCCCAA------------------------------------------- | 20 | 7 | 8 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGTGAGC------------------------------------------------------------------------------------ | 22 | 9 | 5 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------ACACCTGCCACCCAGCCCAAG------------------------------------------ | 21 | 10 | 4 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CGGTGCTGGTGGAGCAGTG--------------------------------------------------------------------------------------- | 19 | 6 | 4 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------ACACCTGCCACCCAGCCC--------------------------------------------- | 18 | 7 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------GACACCTGCCACCCAGCCCAAGG----------------------------------------- | 23 | 1 | 5 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------ACCTGCCACCCAGCCCAA------------------------------------------- | 18 | 1 | 5 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------ACACCTGCCACCCAGCCCA-------------------------------------------- | 19 | 3 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------TGACACCTGCCACCCAGCCCAAGG----------------------------------------- | 24 | 2 | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------GGTGCTGGTGGAGCAGTGAGCAC---------------------------------------------------------------------------------- | 23 | - | 1 | - | - | - | 1 | - | - | - | - | |
| --------------------------------------GCCTCGGTGCTGGTGGAGCAG----------------------------------------------------------------------------------------- | 21 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------GGTGCTGGTGGAGCAGTG--------------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------GTGACACCTGCCACCCAGCCCA-------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------GCCTCGGTGCTGGTGGAGCA------------------------------------------------------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------TCGGTGCTGGTGGAGCAGT---------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ----------------CCTTTCCACCTGGTGGGTACTGGCCTCGGTGCTGGTGGAGCAGTGAGCACGCCATACATTATATCTGTGACACCTGCCACCCAGCCCAAGGCCCCTAGGCCCACATACTTCTGGAGGGGA------------ | |||||||||||
| mouse | TCTTAGGTTGAAAATCCCTTTCCATCTAGTGGGTACTGGCCTCGGTGCTGGTGGAGCAGTGAGCACGCCATACATTATATCTGTGACACCTGCCACCCAGCCCAAGGCCCCTAGGCCCACAAACTTCTGGAGGGGAGTTTGTCTTGGA | |||||||||||
| ******** ** ********************************************************************************************* ************** | ||||||||||||
| ..... ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................ ..... | ENSRNOT00000062104 ENSRNOG00000040351 | |||||||||||
| rat | ((((((((....((((((...(((((.((.((((((((....(((..((((..............)))).)))...))))).))))).))))).....)))))).......)))))))). | 0.980 -50.84 | ||||||||||
| mouse | (((.(((..((...((((.(((((....((((((...(((((.((.((((((((....(((..((((..............)))).)))...))))).))))).))))).....)))))).......))))))))).))..))).))) | 0.980 -54.04 | ||||||||||
| rat | chromosome:6:134400488:134400607:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062104|ENSRNOG00000040351 ## ENSRNOG00000040351|miRNA|| |
| mouse | chromosome:12:110958188:110958335:1 | Same_strand|Boundary_non-coding|ENSMUST00000102441|ENSMUSG00000076396|miRNA|mmu-mir-667 [Source:miRBase;Acc:MI0004196] ## {MIR: mmu-mir-667} |
hsa-mir-511
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-511 5arm | 1 | 1 | 13 | 22 | 9 | 8 | 2 | 14 | 1 | 1 |
| hsa-mir-511 3arm | 6 | 10 | 86.500 | 135 | 75 | 81.500 | 17 | 50 | 9 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-511 5arm | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.001 | 0.000 | 0.001 | 0.000 | 0.000 |
| hsa-mir-511 3arm | 0.000 | 0.000 | 0.005 | 0.008 | 0.004 | 0.006 | 0.001 | 0.003 | 0.001 | 0.000 |
sblock5407 (miRBaseHomolog hsa-mir-511-1) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-511-1 | 0.001 | no | no | 0.33/0.53 | 18/23/0.73 | 0.0 0.0 | 1.0 0.4 | 54 263 | 0 0 | 10 10 | 0 0 | 13 12 | 4 4 | 5arm 3arm | 1 1 | nd nd | 0.26 0.16 | 2 2 | 545 | 10 | 1 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------AUGUGUA------------------------- | 426 | novel | |||||||||
| seed | --------------AUGCCUU---------------------------------------------------------------- | 71 | miR-532 | |||||||||
| seed | ------------------------------------------------------UGUGUAG------------------------ | 47 | novel | |||||||||
| seed | ---------------UGCCUUU--------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------AATGTGTAGCAAAAGACAGGA------------ | 21 | 3 | 6 | 50 | 61 | 40 | 38 | 7 | 23 | 4 | 1 | |
| ----------------------------------------------------AATGTGTAGCAAAAGACAG-------------- | 19 | - | 1 | 17 | 32 | 19 | 13 | 3 | 13 | 2 | - | |
| ----------------------------------------------------AATGTGTAGCAAAAGACAGGAT----------- | 22 | 1 | 2 | 7 | 13 | 4 | 9 | 2 | 3 | - | - | |
| ----------------------------------------------------AATGTGTAGCAAAAGACAGG------------- | 20 | - | - | 3 | 12 | 4 | 9 | - | 1 | 1 | - | |
| -------------CATGCCTTTTGCTCTGCACTCA-------------------------------------------------- | 22 | 1 | 1 | 2 | 9 | 3 | 3 | - | 7 | - | 1 | |
| -----------------------------------------------------ATGTGTAGCAAAAGACAGGAT----------- | 21 | - | 1 | 2 | 8 | 3 | 5 | 4 | 4 | - | - | |
| ----------------------------------------------------AATGTGTAGCAAAAGACA--------------- | 18 | 2 | - | 3 | 5 | 2 | 5 | 1 | - | 2 | - | |
| -------------CATGCCTTTTGCTCTGCACTC--------------------------------------------------- | 21 | - | - | 3 | 10 | - | 1 | 1 | 4 | - | - | |
| -------------CATGCCTTTTGCTCTGCAC----------------------------------------------------- | 19 | - | - | 4 | 3 | 5 | 2 | 1 | 1 | - | - | |
| -----------------------------------------------------ATGTGTAGCAAAAGACAGGA------------ | 20 | - | - | 3 | 3 | 1 | 1 | - | 5 | - | - | |
| -----------------------------------------------------ATGTGTAGCAAAAGACAG-------------- | 18 | - | - | 1 | 2 | - | 1 | - | - | - | - | |
| -------------CATGCCTTTTGCTCTGCACT---------------------------------------------------- | 20 | - | - | 1 | - | - | 2 | - | - | 1 | - | |
| -------------CATGCCTTTTGCTCTGCACTCAG------------------------------------------------- | 23 | - | - | 3 | - | - | - | - | - | - | - | |
| -----------------------------------------------------ATGTGTAGCAAAAGACAGG------------- | 19 | - | - | - | - | 1 | 1 | - | 1 | - | - | |
| -------------CATGCCTTTTGCTCTGCA------------------------------------------------------ | 18 | - | - | - | - | 1 | - | - | 1 | - | - | |
| ----------------------------------------------------AATGTGTAGCAAAAGACAGGATG---------- | 23 | - | - | 1 | - | 1 | - | - | - | - | - | |
| --------------ATGCCTTTTGCTCTGCAC----------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | AATAGATACCCACCATGCCTTTTGCTCTGCACTCAGTACATAATCATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCATT | |||||||||||
| human | ------------TCGTGTCTTTTGCTCTGCAGTCAGTAAATATTTTTTTGTGAATGTGTAGCAAAAGACAGAA------------ | |||||||||||
| mouse | -----------ACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGA------------ | |||||||||||
| * ** ************* ****** *** * ************************* * | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000024736 ENSRNOG00000018251 NP_001099593.1 | |||||||||||
| .........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....... | ENSRNOT00000063072 ENSRNOG00000041319 | |||||||||||
| rat | ....(((.((((((.((.((((((((..((((....((((........))))...)))))))))))).)))).)))).))).... | 0.990 -28.40 | ||||||||||
| human | ((.(((((((((((..(((.(((.((((......))))))).)))..))))))))))))). | 1.000 -21.70 | ||||||||||
| mouse | .((.((.((((((((..(((.(((.(((((....)))))))).)))..)))))))).)))). | 1.000 -19.20 | ||||||||||
| rat | chromosome:17:88441489:88441573:1 | Same_strand|Exonic_non-coding|ENSRNOT00000063072|ENSRNOG00000041319 ## Same_strand|Intronic_coding|ENSRNOT00000024736|ENSRNOG00000018251 ## ENSRNOG00000041319|miRNA|| ## ENSRNOG00000018251|protein_coding|NP_001099593.1|mannose receptor, C type 1 [Source:RefSeq_peptide;Acc:NP_001099593] |
| human | chromosome:10:17927094:17927218:1 | Same_strand|Intronic_coding|ENST00000331429|ENSG00000183748|protein_coding|Macrophage mannose receptor 1-like protein 1 Precursor (C-type lectin domain family 13 member D-like) [Source:UniProtKB/Swiss-Prot;Acc:Q5VSK2] ## Same_strand|Boundary_non-coding|ENST00000385202|ENSG00000207937|miRNA|hsa-mir-511-2 [Source:miRBase;Acc:MI0003128] ## {MIR: hsa-mir-511-1} |
| mouse | chromosome:2:14182606:14182730:1 | Same_strand|Intronic_coding|ENSMUST00000028045|ENSMUSG00000026712|protein_coding|mannose receptor, C type 1 Gene [Source:MGI (curated);Acc:Mrc1-001] ## Same_strand|Boundary_non-coding|ENSMUST00000104704|ENSMUSG00000077897|miRNA|mmu-mir-511 [Source:miRBase;Acc:MI0005554] ## {MIR: mmu-mir-511} |
hsa-mir-653
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-653 5arm | 3 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 10 | 6 |
| hsa-mir-653 3arm | 7 | 9 | 0 | 0 | 2 | 0 | 0 | 0 | 19 | 20 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-653 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0.000 |
| hsa-mir-653 3arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0.001 | 0.001 |
sblock8357 (miRBaseHomolog hsa-mir-653) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-653 | 0.003 | no | no | 0.32/0.45 | 18/23/0.70 | 0.0 0.0 | 0.9 1.0 | 10 40 | 0 0 | 4 5 | 0 0 | 27 27 | -1 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.16 0.18 | 2 2 | 83 | 5 | 2 | 2 |
| Located in cluster 49: hsa-mir-653, rno-mir-489 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------------------------------UCACUGG-------------------------------------------------------- | 56 | novel | ||||
| seed | ------------------------------------------UGAAACA--------------------------------------------------------------------------------------------- | 24 | novel | ||||
| seed | -------------------------------------------GAAACAU-------------------------------------------------------------------------------------------- | 2 | miR-494 | ||||
| seed | --------------------------------------------------------------------------------CACUGGG------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTCACT------------------------------------------- | 21 | 5 | 5 | - | 5 | 3 | |
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTCACTA------------------------------------------ | 22 | - | - | - | 7 | 8 | |
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTCA--------------------------------------------- | 19 | 1 | 1 | 2 | 2 | 7 | |
| -----------------------------------------TTGAAACATTCTCTACTGAACC------------------------------------------------------------------------------- | 22 | 2 | 2 | - | 7 | 2 | |
| -----------------------------------------TTGAAACATTCTCTACTGA---------------------------------------------------------------------------------- | 19 | - | 2 | - | 1 | 3 | |
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTCAC-------------------------------------------- | 20 | 1 | 1 | - | 2 | 1 | |
| -----------------------------------------TTGAAACATTCTCTACTG----------------------------------------------------------------------------------- | 18 | 2 | 2 | - | - | - | |
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTCACTAT----------------------------------------- | 23 | - | 1 | - | 2 | - | |
| ------------------------------------------------------------------------------TTCACTGGGGTTTGTTTC---------------------------------------------- | 18 | - | 1 | - | - | 1 | |
| -----------------------------------------TTGAAACATTCTCTACTGAACCA------------------------------------------------------------------------------ | 23 | - | - | - | 1 | - | |
| ------------------------------------------TGAAACATTCTCTACTGAAC-------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------TCACTGGGGTTTGTTTCACT------------------------------------------- | 20 | - | - | - | 1 | - | |
| ------------------------------------------TGAAACATTCTCTACTGAACC------------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | --------------AGGTTCTGATTTTTCATTCTTTCAGTGTTGAAACATTCTCTACTGAACCAAGCTCCAAAACAAGTTCACTGGGGTTTGTTTCACTATTGCAAGAATTGCTAAGTATGAAGCTG--------------- | ||||||
| human | TCATCTGACAACAGAGGTTCTAATTTTTCATTCCTTCAGTGTTGAAACAATCTCTACTGAACC-AGCTTCAAA-CAAGTTCACTGGAGTTTGTTTCAATATTGCAAGAA-TGATAAGATGGAAGCTACTTTCATCAGCATGA | ||||||
| mouse | ----------------------------CATTCTTTCAGTGTTGAAACAATCTCTACTGAACCAAGCTCCAAAGCGAGTTCACTGGAGTTTGTTTCAGTATTGCAGGAG-TG------------------------------ | ||||||
| ***** *************** ************* **** **** * ********** ********** ******* ** ** | |||||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000013910 ENSRNOG00000010053 Calcr | ||||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000013937 ENSRNOG00000010053 Calcr | ||||||
| ..... ............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... | ENSRNOT00000054572 ENSRNOG00000036462 | ||||||
| rat | ((.(((..((((..(((((((.(((((.(((((((..(((((.(((((...............))))).)))))..))))))).))))).))))).))..))))..))).)). | 0.980 -31.76 | |||||
| human | ((((((((....((((.(((((.(((.((((((...((((((((((((((.(((((.(((((. ......... ...))))).))))).))))))))))))))...))) ))).))).))))).)).))....)))).)))) | 0.999 -47.62 | |||||
| mouse | (((((((.((((((((((((((.(((((.(((((...(((....)))..))))).))))).)))))))))))))).))))) )) | 1.000 -35.40 | |||||
| rat | chromosome:4:28517611:28517723:-1 | Same_strand|Intronic_coding|ENSRNOT00000013937|ENSRNOG00000010053 ## Same_strand|Exonic_non-coding|ENSRNOT00000054572|ENSRNOG00000036462 ## ENSRNOG00000036462|miRNA|| ## ENSRNOG00000010053|protein_coding|Calcr|Calcitonin receptor precursor (CT-R) (C1A/C1B). [Source:UniProtKB/Swiss-Prot;Acc:P32214] |
| human | chromosome:7:92949991:92950129:-1 | Same_strand|Intronic_coding|ENST00000359558|ENSG00000004948|protein_coding|Calcitonin receptor Precursor (CT-R) [Source:UniProtKB/Swiss-Prot;Acc:P30988] ## Same_strand|Boundary_non-coding|ENST00000385279|ENSG00000208014|miRNA|hsa-mir-653 [Source:miRBase;Acc:MI0003674] ## {MIR: hsa-mir-653} |
| mouse | chromosome:6:3671303:3671385:-1 | Same_strand|Intronic_coding|ENSMUST00000115622|ENSMUSG00000023964|protein_coding|calcitonin receptor Gene [Source:MGI Symbol;Acc:MGI:101950] ## Same_strand|Exonic_non-coding|ENSMUST00000102402|ENSMUSG00000076357|miRNA|mmu-mir-653 [Source:miRBase;Acc:MI0005557] ## {MIR: mmu-mir-653} |
mmu-mir-675
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-675 5arm | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| mmu-mir-675 3arm | 1 | 1 | 142 | 150 | 1 | 0 | 14 | 8 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-675 5arm | 0 | 0 | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 |
| mmu-mir-675 3arm | 0.000 | 0.000 | 0.008 | 0.009 | 0.000 | 0 | 0.001 | 0.000 | 0 | 0 |
sblock910 (miRBaseHomolog mmu-mir-675) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-675 | 0.001 | no | no | 0.52/0.67 | 18/26/0.81 | 0.0 0.3 0.0 | 2.5 0.9 0.0 | 4 181 1 | 0 0 0 | 2 7 1 | 0 0 0 | 28 26 9 | 3 5 19 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.24 0.17 0.12 | 2 2 2 | 321 | 7 | 2 | 3 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------------------------------------GUAUGCC---------------------------------------- | 187 | novel | ||||||
| seed | ---------------------------------------------------------------UGUAUGC----------------------------------------- | 128 | novel | ||||||
| seed | -----------------------------GGUGCGG--------------------------------------------------------------------------- | 4 | novel | ||||||
| seed | -----------------------------------------------------------------UAUGCCC--------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------------------GCUCAGU--------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | |||
| ---------------------------------------------------------------TGTATGCCCTAACCGCTCAGTC-------------------------- | 22 | 1 | - | 33 | 37 | - | 7 | 3 | |
| ---------------------------------------------------------------TGTATGCCCTAACCGCTCAGT--------------------------- | 21 | - | - | 20 | 19 | - | 2 | - | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTCAGTC-------------------------- | 23 | - | - | 19 | 16 | - | 1 | - | |
| ---------------------------------------------------------------TGTATGCCCTAACCGCTCAG---------------------------- | 20 | - | - | 22 | 10 | 1 | - | - | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTCAGT--------------------------- | 22 | - | - | 11 | 10 | - | - | 1 | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTCAG---------------------------- | 21 | - | - | 10 | 6 | - | 1 | 4 | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTCA----------------------------- | 20 | - | - | 9 | 8 | - | 2 | - | |
| ---------------------------------------------------------------TGTATGCCCTAACCGCTCA----------------------------- | 19 | - | - | 8 | 9 | - | 1 | - | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCT------------------------------- | 18 | - | - | 1 | 15 | - | - | - | |
| ---------------------------------------------------------------TGTATGCCCTAACCGCTC------------------------------ | 18 | - | - | 3 | 10 | - | - | - | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTC------------------------------ | 19 | - | 1 | 3 | 8 | - | - | - | |
| --------------------------------------------------------------CTGTATGCCCTAACCGCTCAGTCC------------------------- | 24 | - | - | 1 | 1 | - | - | - | |
| ----------------------------------------------------------------------------CGCTCAGTCCCTGGGTCTGGCATGAC--------- | 26 | - | - | 1 | - | - | - | - | |
| ----------------------------TGGTGCGGAAAGGGCCCACAGTG------------------------------------------------------------ | 23 | - | - | 1 | - | - | - | - | |
| ----------------------------TGGTGCGGAAAGGGCCCACAG-------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------GTATGCCCTAACCGCTCAGT--------------------------- | 20 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------TGTATGCCCTAACCGCTCAGTCC------------------------- | 23 | - | - | 1 | - | - | - | - | |
| ----------------------------TGGTGCGGAAAGGGCCCA----------------------------------------------------------------- | 18 | - | - | 1 | - | - | - | - | |
| ----------------------------TGGTGCGGAAAGGGCCCACA--------------------------------------------------------------- | 20 | - | - | 1 | - | - | - | - | |
| rat | TTCCCATGAGGCACTGCGGCCCAGGGACTGGTGCGGAAAGGGCCCACAGTGGACTTGGTGCACTGTATGCCCTAACCGCTCAGTCCCTGGGTCTGGCATGACAGACAGAAC | ||||||||
| mouse | -----------------GGCCCAGGGACTGGTGCGGAAAGGGCCCACAGTGGACTTGGTACACTGTATGCCCTAACCGCTCAGTCCCTGGGTCTGGC-------------- | ||||||||
| ****************************************** ************************************* | |||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027588 ENSRNOG00000020367 | ||||||||
| ...................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................. | ENSRNOT00000062103 ENSRNOG00000040350 | ||||||||
| rat | (((...((...((.(((((((((((((((((.((((..(((((..((((((.((...)).))))))..)))))..))))))))))))))))))..))))).))....))). | 0.770 -58.80 | |||||||
| mouse | ((((((((((((((.((((..(((((..((((((.........))))))..)))))..)))))))))))))))))).... | 1.000 -54.90 | |||||||
| rat | chromosome:1:202824489:202824599:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000062103|ENSRNOG00000040350 ## Same_strand|Exonic_non-coding|ENSRNOT00000062103|ENSRNOG00000040350 ## ENSRNOG00000020367|pseudogene|| ## ENSRNOG00000040350|miRNA|| |
| mouse | chromosome:7:149762970:149763049:-1 | Same_strand|Exonic_non-coding|ENSMUST00000000031|ENSMUSG00000000031|protein_coding|H19 fetal liver mRNA Gene [Source:MGI Symbol;Acc:MGI:95891] ## {MIR: mmu-mir-675} |
hsa-mir-507
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-507 5arm | 3 | 4 | 5 | 4 | 2 | 4 | 99 | 111 | 133 | 63 |
| hsa-mir-507 3arm | 2 | 3 | 3 | 3 | 2 | 0 | 44 | 35 | 49 | 25 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-507 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.008 | 0.006 | 0.009 | 0.004 |
| hsa-mir-507 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.003 | 0.002 | 0.003 | 0.002 |
sblock12742 (miRBaseHomolog hsa-mir-507) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-507 | 0.001 | no | no | 0.28/0.52 | 18/23/0.92 | 0.0 0.0 | 0.0 0.7 | 234 119 | 0 0 | 10 9 | 0 0 | 22 16 | 1 3 | 5arm 3arm | 1 1 | nd nd | 0.18 0.17 | 2 1 | 594 | 10 | 2 | 2 |
| Located in cluster 92: mmu-mir-201, hsa-mir-507 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------CACUUCA---------------------------------------------------------------------------------------- | 428 | novel | |||||||||
| seed | -----------------------------------------------------------------------------UUGGUAC-------------------------------------------------- | 157 | novel | |||||||||
| seed | ------------------------------------------------------------------------------UGGUACU------------------------------------------------- | 8 | novel | |||||||||
| seed | -------------------------------------------------------------------------------GGUACUU------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------TCACTTCAGGATGTACCACCCA-------------------------------------------------------------------------- | 22 | 1 | 3 | 2 | 4 | 1 | 3 | 60 | 53 | 92 | 29 | |
| --------------------------------------TCACTTCAGGATGTACCACCC--------------------------------------------------------------------------- | 21 | 1 | - | 1 | - | - | 1 | 16 | 23 | 17 | 23 | |
| --------------------------------------TCACTTCAGGATGTACCACCCAT------------------------------------------------------------------------- | 23 | - | - | 1 | - | - | - | 15 | 24 | 17 | 5 | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGTGAG------------------------------------- | 21 | 1 | - | 1 | 2 | 1 | - | 17 | 12 | 12 | 8 | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGTGAGA------------------------------------ | 22 | - | - | 2 | - | 1 | - | 11 | 10 | 13 | 10 | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGTGA-------------------------------------- | 20 | - | 1 | - | 1 | - | - | 6 | 3 | 14 | 4 | |
| --------------------------------------TCACTTCAGGATGTACCACC---------------------------------------------------------------------------- | 20 | 1 | - | 1 | - | 1 | - | 4 | 3 | 3 | 1 | |
| --------------------------------------TCACTTCAGGATGTACCA------------------------------------------------------------------------------ | 18 | - | 1 | - | - | - | - | 1 | 6 | 2 | 4 | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGT---------------------------------------- | 18 | - | 2 | - | - | - | - | 6 | 3 | 2 | - | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGTG--------------------------------------- | 19 | 1 | - | - | - | - | - | 3 | 2 | 5 | 2 | |
| --------------------------------------TCACTTCAGGATGTACCAC----------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 3 | 2 | 2 | 1 | |
| -----------------------------------------------------------------------------TTGGTACTTCTTTAAGTGAGA------------------------------------ | 21 | - | - | - | - | - | - | - | 1 | 2 | 1 | |
| -----------------------------------------------------------------------------TTGGTACTTCTTTAAGTGAG------------------------------------- | 20 | - | - | - | - | - | - | 1 | 2 | - | - | |
| ------------------------------------------------------------------------------TGGTACTTCTTTAAGTGA-------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------ATTGGTACTTCTTTAAGTGAGAT----------------------------------- | 23 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------TTGGTACTTCTTTAAGTG--------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| rat | ----------------CAGTCACATAGTGTGTGATGTATCACTTCAGGATGTACCACCCATTTAATGGAAAATATGATTGGTACTTCTTTAAGTGAGATAATGCAC--------------------ACTAACTG | |||||||||||
| human | GAGTGAGGGACATTTTCCGCTGTGCTGTGTGTAGTGCTTCACTTCAAGAAGTGCCATGCATGTGTCTAGAAATATGTTTTGCACCTTTTGGAGTGAAATAATGCACAACAGATACAAGTCAGAACTACCCACTC | |||||||||||
| * * ****** ** ******** ** ** *** *** * ******* ** * ** * ** ***** ********* ** *** | ||||||||||||
| rat | ((((....(((((((((.(((.((((((.((((.((((((..(((............)))..)))))).)))).)))))).))).))))) )))))))) | 0.990 -33.90 | ||||||||||
| human | (((((.((.....(((..(((((((((((((((.((.((((((((((((.((((...((((((........))))))...)))).)))))))))))).)).)))))).))).)))).))..)))...))))))) | 0.928 -49.40 | ||||||||||
| rat | chromosome:X:154169434:154169531:-1 | intergenic |
| human | chromosome:X:146120175:146120308:-1 | Same_strand|Boundary_non-coding|ENST00000385234|ENSG00000207969|miRNA|hsa-mir-507 [Source:miRBase;Acc:MI0003194] ## {MIR: hsa-mir-507} |
miRBaseHomolog_cloningHIGH_randfoldOK (2 loci)
hsa-mir-665
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-665 3arm | 259 | 143 | 0 | 2 | 3 | 9 | 0 | 1 | 0 | 3 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-665 3arm | 0.009 | 0.006 | 0 | 0.000 | 0.000 | 0.001 | 0 | 0.000 | 0 | 0.000 |
block2065948 (miRBaseHomolog hsa-mir-665) [miRBaseHomolog_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-665 | 0.002 | no | no | 0.58/0.72 | 18/24/0.73 | 0.0 | 2.0 | 316 | 0 | 7 | 0 | 30 | 3 | 3arm | 1 | nd | 0.10 | 1 | 420 | 7 | na | na |
| Located in cluster 65: rno-mir-337, rno-mir-540, hsa-mir-665 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------------CCAGGAG--------------------------------------------- | 403 | novel | ||||||
| seed | ------------------------------------------------------------------CAGGAGG-------------------------------------------- | 17 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | T5S2 | |||
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCCTTAC------------------------------ | 23 | 77 | 36 | - | 1 | 2 | - | 2 | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCC---------------------------------- | 19 | 45 | 39 | - | - | 2 | - | 1 | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCCT--------------------------------- | 20 | 56 | 25 | 2 | 1 | - | - | - | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCCTTA------------------------------- | 22 | 38 | 20 | - | - | 2 | 1 | - | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCCTT-------------------------------- | 21 | 19 | 10 | - | - | 2 | - | - | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCC----------------------------------- | 18 | 13 | 3 | - | 1 | 1 | - | - | |
| -----------------------------------------------------------------CCAGGAGGCTGAGGTCCC---------------------------------- | 18 | 6 | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------CCAGGAGGCTGAGGTCCCTTAC------------------------------ | 22 | 2 | 3 | - | - | - | - | - | |
| ----------------------------------------------------------------ACCAGGAGGCTGAGGTCCCTTACA----------------------------- | 24 | 3 | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------CCAGGAGGCTGAGGTCCCTTA------------------------------- | 21 | - | 2 | - | - | - | - | - | |
| -----------------------------------------------------------------CCAGGAGGCTGAGGTCCCT--------------------------------- | 19 | - | 2 | - | - | - | - | - | |
| -----------------------------------------------------------------CCAGGAGGCTGAGGTCCCTT-------------------------------- | 20 | - | 1 | - | - | - | - | - | |
| rat | CAGTGCTCCCAGAACAGGGTCTCCTTGAGGGGCCTCTGCCTCTATCCAGGATTATCTTTTTATGACCAGGAGGCTGAGGTCCCTTACAGGCGGCCTCTTACTCTCTCCTTGAGCCCT | ||||||||
| human | -------------------------CGAGGGGTCTCTGCCTCTACCCAGGACT---CTTTCATGACCAGGAGGCTGAGGCCCCTCA------------------------------- | ||||||||
| mouse | --------CCAGAACAGGGTCTCCTTGAGGGGCCTCTGCCTCTATCCAGGATTATGTTTTTATGACCAGGAGGCTGAGGTCCCTTACAGGCGGCCT--------------------- | ||||||||
| ****** *********** ****** * *** ****************** **** * | |||||||||
| ...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................. | ENSRNOT00000062108 ENSRNOG00000040355 | ||||||||
| rat | .((.((((..(((..((((((.((((((((((((((.((((((.....((.((((......)))))).)))))).))))))))))).))).)))).))...)))......)))).)) | 0.990 -47.20 | |||||||
| human | .((((((((((.((((((...((.((.. ...)).))....)))))).)))))))))). | 1.000 -32.40 | |||||||
| mouse | ........(((((.((((((((((((((.((((((.....((.(((((....))))))).)))))).))))))))))).))).))))) | 0.998 -44.30 | |||||||
| rat | chromosome:6:134177278:134177394:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062108|ENSRNOG00000040355 ## ENSRNOG00000040355|miRNA|| |
| human | chromosome:14:100411081:100411237:1 | Same_strand|Boundary_non-coding|ENST00000390187|ENSG00000211521|miRNA|hsa-mir-665 [Source:miRBase;Acc:MI0005563] ## {MIR: hsa-mir-665} |
| mouse | chromosome:12:110824522:110824609:1 | Same_strand|Boundary_non-coding|ENSMUST00000102358|ENSMUSG00000076313|miRNA|mmu-mir-665 [Source:miRBase;Acc:MI0004171] ## {MIR: mmu-mir-665} |
hsa-mir-328
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-328 3arm | 1476 | 2188 | 73 | 96 | 196 | 134 | 172 | 229 | 275 | 165 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-328 3arm | 0.049 | 0.095 | 0.004 | 0.006 | 0.010 | 0.010 | 0.013 | 0.012 | 0.018 | 0.011 |
block398376 (miRBaseHomolog hsa-mir-328) [miRBaseHomolog_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-328 | 0.003 | no | no | 0.67/0.75 | 18/24/0.71 | 0.0 | 0.0 | 2524 | 0 | 10 | 0 | 26 | 11 | 3arm | 1 | nd | 0.25 | 2 | 5004 | 10 | na | na |
| Member of family miR-328 (seed UGGCCCU): hsa-mir-328, rno-mir-328, block1350485_cand |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------------------------------------------UGGCCCU--------------------------------------------------- | 4985 | miR-328 | |||||||||
| seed | --------------------------------------------------------------------------------------------------------GGCCCUC-------------------------------------------------- | 12 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------------------------------GCCCUCU------------------------------------------------- | 4 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------------------------CUGGCCC---------------------------------------------------- | 3 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTACC--------------------------------------- | 20 | 873 | 1651 | 49 | 67 | 138 | 78 | 135 | 156 | 191 | 114 | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTA----------------------------------------- | 18 | 373 | 311 | 10 | 9 | 25 | 28 | 11 | 37 | 38 | 18 | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTAC---------------------------------------- | 19 | 190 | 181 | 12 | 14 | 27 | 21 | 23 | 30 | 37 | 23 | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTACCC-------------------------------------- | 21 | 31 | 34 | 1 | 6 | 4 | 5 | 3 | 5 | 4 | 6 | |
| -------------------------------------------------------------------------------------------------------TGGCCCTCTCTGCCCTACC--------------------------------------- | 19 | 3 | 3 | 1 | - | 2 | 2 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTACCCC------------------------------------- | 22 | 3 | 3 | - | - | - | - | - | 1 | 1 | 1 | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTACCCCC------------------------------------ | 23 | - | 4 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------------------GGCCCTCTCTGCCCTACC--------------------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------------------------------------------GCTGGCCCTCTCTGCCCT------------------------------------------ | 18 | 2 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------------CTGGCCCTCTCTGCCCTACCCCCC----------------------------------- | 24 | - | - | - | - | - | - | - | - | 1 | 1 | |
| rat | --GGAGGAGGGGGAGGGAGGGAAG----------------------------GGGCGAGGGAGGGGCTAGAAGGTAGTCGGCAGATGCAACCATTAGGCTGGCTGGCCCTCTCTGCCCTACCCCCCACCTCACTAACCCGTG----GCC---TCC------ | |||||||||||
| human | TGGCCGAAGAACATGGGTGAGAAGTCCTGGGCTGTCTCAGAGCCTGGAGTGGGGGGGCAGGAGGGGCT--CAGGGAGAAAGTGCATACAGCCC---------CTGGCCCTCTCTGCCCTTCCGTCCCCTGCTCTTGGCCATGCTGTGCCCAGTCCAGGCCA | |||||||||||
| mouse | --GGAGGAGGGGGAGGGAGGGAGGGAGGG----------------AGGGAGAGAGAGAGGGAGGAGCTAGAAGGTAGACGGCAGATGCAACCATTAGGCTGGCTGGCCCTCGCTGCCCTACCCCCCACCTCACTAACCCGTG----GCC---TCC------ | |||||||||||
| * * ** *** * ** * * * * ***** *** *** ** * ** ** ** ********* ******* ** ** * * ** ** ** *** *** | ||||||||||||
| rat | (((((.(((..((.((((.... (((...(((.(((((.(((.((((((((((.((((....))))..)))))))).)).)))..))))).)))))).)))).))..)))... .)) ))) | 0.950 -61.40 | ||||||||||
| human | .((((...((...((((((...(((....(((((....(((((..((..(((..((((((..(((((. (((((.......((.....)))) ))))))))..))))))..)))..))..))))))))))..))).)))))).))..)))). | 0.969 -79.61 | ||||||||||
| mouse | (((((.(((..((.((((..(((.((( ((((..((...(((((...((((((..........((....))..........))))))..))))).)).)))).)))))).)))).))..)))... .)) ))) | 0.902 -64.65 | ||||||||||
| rat | chromosome:14:46393625:46393742:1 | intergenic |
| human | chromosome:16:65793694:65793843:-1 | Opposite_strand|Boundary_coding|ENST00000393995|ENSG00000102890|protein_coding|Engulfment and cell motility protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q96BJ8] ## Same_strand|Boundary_non-coding|ENST00000385213|ENSG00000207948|miRNA|hsa-mir-328 [Source:miRBase;Acc:MI0000804] ## {MIR: hsa-mir-328} |
| mouse | chromosome:5:65038872:65039001:-1 | intergenic ## {Repeats: dust 0 class=dust,trf 0 class=trf,(TCCC)n -1 class=Simple_repeat} |
miRBaseHomolog_multiarm_DicerOK_randfoldOK (2 loci)
mmu-mir-295
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-295 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500 | 0 |
| mmu-mir-295 3arm | 0.500 | 0.500 | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-295 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
| mmu-mir-295 3arm | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock1754 (miRBaseHomolog mmu-mir-295) [miRBaseHomolog_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-295 | 0.001 | no | no | 0.39/0.48 | 18/23/0.75 | 0.0 0.7 | 0.0 1.7 | 1 3 | 0 0 | 1 3 | 0 0 | 16 12 | 1 3 | 5arm 3arm | 2 2 | nd nd | 0.13 0.15 | 2 1 | 4 | 4 | 2 | 3 |
| Member of family novel113 (seed CUCAAAU): mmu-mir-295, hsa-mir-372 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------AGUGCUA-------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------AAGUGCU--------------------------------------------- | 1 | miR-291a | |||
| seed | --------------------------------CUCAAAU--------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| -------------------------------------------------------------------AAAGTGCTACTACTTTTGGG--------------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------------------------AAGTGCTACTACTTTTGGGTGTC----------------------------- | 23 | 1 | - | - | - | |
| -------------------------------ACTCAAATGTGGGGCACACTTCT------------------------------------------------------------------ | 23 | - | - | - | 1 | |
| --------------------------------------------------------------------AAGTGCTACTACTTTTGG---------------------------------- | 18 | - | 1 | - | - | |
| rat | ---------------TGTTCATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCCTGTGGGCAC----------------- | |||||
| mouse | CAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTCTCTCCTGTGGGCACCATTCACAGGTCGGCTG | |||||
| ** **** ********************************** * * * ********************* ** ************** | ||||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000058408 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000041454 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000047405 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000058404 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000042276 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000058403 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ----- ---------------------------------------------------------------------------------------- ----- | ENSRNOT00000052029 ENSRNOG00000030940 RGD1560365_predicted | |||||
| ..... ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......... ..... | ENSRNOT00000062151 ENSRNOG00000040398 | |||||
| rat | ((..(((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).)))..)). | 1.000 -33.20 | ||||
| mouse | (((.((((.......(((((((...((.((((((((((.(((((((((..(((((.........))))).))))).)))).)))))))))).)).))))))).........))))..))) | 0.996 -45.69 | ||||
| rat | chromosome:1:73183800:73183887:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000058400|ENSRNOG00000030940 ## Opposite_strand|Intronic_coding|ENSRNOT00000058408|ENSRNOG00000030940 ## Same_strand|Exonic_non-coding|ENSRNOT00000062151|ENSRNOG00000040398 ## ENSRNOG00000040398|miRNA|| ## ENSRNOG00000030940|protein_coding|RGD1560365_predicted|vomeronasal 2 receptor 36 [Source:RefSeq_peptide;Acc:NP_001092953] |
| mouse | chromosome:7:3220749:3220868:1 | Same_strand|Boundary_non-coding|ENSMUST00000104694|ENSMUSG00000077886|miRNA|mmu-mir-295 [Source:miRBase;Acc:MI0000393] ## {MIR: mmu-mir-295} |
hsa-mir-372
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-372 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.500 | 0 |
| hsa-mir-372 3arm | 0.500 | 0.500 | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-372 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
| hsa-mir-372 3arm | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock501 (miRBaseHomolog hsa-mir-372) [miRBaseHomolog_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-372 | 0.002 | no | no | 0.39/0.48 | 18/23/0.75 | 0.0 0.7 | 0.0 1.7 | 1 3 | 0 0 | 1 3 | 0 0 | 16 12 | 1 3 | 5arm 3arm | 2 2 | nd nd | 0.13 0.15 | 2 1 | 4 | 4 | 2 | 3 |
| Located in cluster 2: hsa-mir-372, mmu-mir-294, mmu-mir-293, mmu-mir-291b, rno-mir-292, rno-mir-291a, rno-mir-290 |
| Member of family novel113 (seed CUCAAAU): mmu-mir-295, hsa-mir-372 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------AGUGCUA--------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------AAGUGCU---------------------------------------- | 1 | miR-291a | |||
| seed | --------------------------------CUCAAAU---------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| --------------------------------------------------------------------AAGTGCTACTACTTTTGGGTGTC------------------------ | 23 | 1 | - | - | - | |
| -------------------------------ACTCAAATGTGGGGCACACTTCT------------------------------------------------------------- | 23 | - | - | - | 1 | |
| -------------------------------------------------------------------AAAGTGCTACTACTTTTGGG---------------------------- | 20 | - | - | 1 | - | |
| --------------------------------------------------------------------AAGTGCTACTACTTTTGG----------------------------- | 18 | - | 1 | - | - | |
| rat | ---------------TGCTCATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCC------------TGTGGGCAC | |||||
| human | -----------------------------GGCCTCAAATGTGGAGCACTATTCTGATGTCCAAGTGGAAAGTGCTGCGACATTTGAGCGT------------------------- | |||||
| mouse | GTTTGGATCTAGCGAAATTCCATATAGCCATACTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTGGAAAGTGCTTCC-CTTTTGTGTGTTGCCATGTGGAGAAAGCATCGGAAC | |||||
| ****** * ** * * * ** ********* * * **** * ** | ||||||
| ..... ..........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .............. | ENSRNOT00000062160 ENSRNOG00000040407 | |||||
| rat | (((((((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)) .))))))). | 1.000 -35.70 | ||||
| human | .((((((((((((.((((((.((((...........)))))))))).)).)))))))).)) | 0.997 -23.10 | ||||
| mouse | ((((.(((...((....((((((((.((.((((.(((((.((((((.((.(((..(((....)))))).)).)))))) .))))).)))).)).))))))))...))))).)))) | 0.999 -39.70 | ||||
| rat | chromosome:1:64272841:64272928:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000062160|ENSRNOG00000040407 ## ENSRNOG00000040407|miRNA|| |
| human | chromosome:19:58982925:58983052:1 | Same_strand|Boundary_non-coding|ENST00000362225|ENSG00000199095|miRNA|hsa-mir-372 [Source:miRBase;Acc:MI0000780] ## {MIR: hsa-mir-372} |
| mouse | chromosome:7:3220625:3220738:1 | Same_strand|Boundary_non-coding|ENSMUST00000104710|ENSMUSG00000077903|miRNA|mmu-mir-294 [Source:miRBase;Acc:MI0000392] ## {MIR: mmu-mir-294} |
miRBaseHomolog_cloningHIGH_multiarm_DicerOK (1 loci)
hsa-mir-935
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-935 5arm | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-935 3arm | 1549 | 1197 | 5 | 2 | 2 | 3 | 0 | 6 | 9 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-935 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-935 3arm | 0.051 | 0.052 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.001 | 0.000 |
sblock499 (miRBaseHomolog hsa-mir-935) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-935 | 0.013 | no | no | 0.56/0.84 | 18/24/0.71 | 0.0 0.0 0.0 0.0 0.0 | 0.0 2.2 0.0 1.9 0.0 | 1 5 1 1939 1 | 0 0 0 0 0 | 1 2 1 9 1 | 0 0 0 0 0 | 19 27 43 24 21 | 12 1 -12 3 11 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.11 0.17 0.74 0.17 0.06 | 1 3 11 3 1 | 2780 | 9 | 2 | 3 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------AGUUACC--------------------------------------- | 2441 | novel | ||||||||
| seed | -----------------------------------------------------------------CAGUUAC---------------------------------------- | 324 | novel | ||||||||
| seed | -------------------------------------------------------------------GUUACCG-------------------------------------- | 7 | novel | ||||||||
| seed | ----------------------------GUGGCGG----------------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | --------------------GGGCGGC------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------------AUCCUCC------------------------------------------------------ | 1 | novel | ||||||||
| seed | --------------------------------------------------------------------------CUUCCGC------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTACCGCC------------------------ | 23 | 352 | 413 | - | - | 1 | - | 1 | 5 | - | |
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTAC---------------------------- | 19 | 415 | 180 | 3 | 2 | 1 | - | - | 1 | 1 | |
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTACC--------------------------- | 20 | 323 | 256 | 2 | - | - | - | - | - | - | |
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTACCGC------------------------- | 22 | 119 | 98 | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTA----------------------------- | 18 | 78 | 76 | - | - | - | - | 2 | 1 | - | |
| -----------------------------------------------------------------CAGTTACCGCTTCCGCTACCG-------------------------- | 21 | 58 | 51 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTAC---------------------------- | 20 | 62 | 31 | - | - | - | 1 | - | 1 | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTACCGCC------------------------ | 24 | 53 | 40 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTACC--------------------------- | 21 | 36 | 20 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCT------------------------------ | 18 | 15 | 9 | - | - | - | - | 2 | - | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTA----------------------------- | 19 | 16 | 9 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTACCGC------------------------- | 23 | 8 | 9 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CCAGTTACCGCTTCCGCTACCG-------------------------- | 22 | 9 | 2 | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------AGTTACCGCTTCCGCTACC--------------------------- | 19 | 3 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------AGTTACCGCTTCCGCTACCGCC------------------------ | 22 | 1 | 2 | - | - | - | - | - | - | - | |
| ---------------------------AGTGGCGGGAGCGGCCCCTC----------------------------------------------------------------- | 20 | 1 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------------CATCCTCCGTCTGCCCAGT------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------AGTTACCGCTTCCGCTACCGC------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | |
| -------------------CGGGCGGCAGTGGCGGGAG-------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GCTTCCGCTACCGCCGCC--------------------- | 18 | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------AGTGGCGGGAGCGGCCCC------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------AGTGGCGGGAGCGGCCCCTCGG--------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------AGTGGCGGGAGCGGCCCCTCG---------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | |
| rat | CTCAAGGCCGGCGGCGGCGCGGGCGGCAGTGGCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGCCGCCGCTCCCGCTCCAGCTCCCGAG | ||||||||||
| human | -------------------------GCAGTGGCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGC------------------------- | ||||||||||
| ************************************************************** | |||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019300 ENSRNOG00000014348 Cacng8 | ||||||||||
| ..............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................. | ENSRNOT00000063038 ENSRNOG00000041285 | ||||||||||
| rat | (((..(((.((.(((((.((.((((((.(((((((((((((...((.(((............))).))...))))))))))))).))))))))..))))))).)))...))) | 1.000 -62.50 | |||||||||
| human | ((.(((((((((((((...((.(((............))).))...))))))))))))).)) | 0.998 -31.20 | |||||||||
| rat | chromosome:1:64068755:64068866:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063038|ENSRNOG00000041285 ## Same_strand|Exonic_coding|ENSRNOT00000019300|ENSRNOG00000014348 ## ENSRNOG00000041285|miRNA|| ## ENSRNOG00000014348|protein_coding|Cacng8|Voltage-dependent calcium channel gamma-8 subunit (Neuronal voltage- gated calcium channel gamma-8 subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q8VHW5] ## {Repeats: GC_rich 1 22 -1 class=Low_complexity,GC_rich 1 9 -1 class=Low_complexity} |
| human | chromosome:19:59177344:59177495:1 | Same_strand|Exonic_coding|ENST00000270458|ENSG00000142408|protein_coding|Voltage-dependent calcium channel gamma-8 subunit (Neuronal voltage-gated calcium channel gamma-8 subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q8WXS5] ## Same_strand|Boundary_non-coding|ENST00000401179|ENSG00000215998|miRNA|hsa-mir-935 [Source:miRBase;Acc:MI0005757] ## {SimpF: oe = 0.98 0 CpG, 1 Eponine, 1 Eponine} ## {MIR: hsa-mir-935} |
| Back to summary page | confident homolog loci of miRBase miRNAs: | Page 1 | Page 2 |
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