confident homolog loci of miRBase miRNAs
miRBaseHomolog_cloningHIGH_multiarm_DicerOK (1 loci)
miRBaseHomolog_cloningOK_multiarm_DicerOK (1 loci)
mmu-mir-291b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-291b 5arm | 0.500 | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-291b 3arm | 1 | 2 | 5 | 6 | 3 | 1 | 0 | 1 | 2 | 3 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-291b 5arm | 0.000 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-291b 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
sblock504 (miRBaseHomolog mmu-mir-291b) [miRBaseHomolog_cloningOK_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-291b | 0.031 | no | no | 0.30/0.57 | 18/23/0.81 | 0.0 0.0 | 1.5 0.3 | 2 13 | 0 0 | 2 9 | 0 0 | 28 22 | 3 5 | 5arm 3arm | 2 2 | nd nd | 0.24 0.35 | 2 5 | 26 | 9 | 1 | 3 |
| Located in cluster 2: hsa-mir-372, mmu-mir-294, mmu-mir-293, mmu-mir-291b, rno-mir-292, rno-mir-291a, rno-mir-290 |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------------------AAGUGCA-------------------------------------------------------- | 24 | novel | ||||||||
| seed | -------------------------------------------AUCAAAG------------------------------------------------------------------------------------------- | 2 | miR-291a | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGTTAGTC----------------------------------------- | 23 | - | 1 | 4 | 3 | - | 1 | - | 2 | 2 | |
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGTTAG------------------------------------------- | 21 | 1 | - | - | 1 | 2 | - | 1 | - | - | |
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGTT--------------------------------------------- | 19 | - | 1 | - | - | 1 | - | - | - | 1 | |
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGT---------------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGTTAGT------------------------------------------ | 22 | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------AAAGTGCATCCATTTTGTTA-------------------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------CATCAAAGTGGAGGCCCT--------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------CATCAAAGTGGAGGCCCTCTC------------------------------------------------------------------------------ | 21 | - | - | 1 | - | - | - | - | - | - | |
| rat | ------------CGGATCTTGGAAGTTGGAAC--ACAGGGTCCATCAAAGTGGAGGCCCTCTCCGTGGCTTGGCGGGAAAGTGCATCCATTTTGTTAGTCTCTGTGT-------------------CCCGCTGGACTCACC | ||||||||||
| mouse | GGAGCTGAGCCTCAGGTCTTGGAAGTTGGAACATACAGTGTCGATCAAAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCAGCTGC- | ||||||||||
| * * **************** **** *** ********************** ****************************** ********** ** **** * * | |||||||||||
| ..... ..................>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .................... | ENSRNOT00000062195 ENSRNOG00000040442 | ||||||||||
| rat | .((.(((....(((.((.(( ((((((.....(((((((((.((.((.(((((......)))))..)).)).))))))))).....)))))))) )).)))))).))... | 0.990 -38.70 | |||||||||
| mouse | ..(((((((((...(((.(((((.((((..((((((((...(((.(((((((((.((.((.(((((......)))))..)).)).))))))))).)))...))))))))...)))).)))))...))))))).))))).. | 0.994 -55.50 | |||||||||
| rat | chromosome:1:64274052:64274159:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000062195|ENSRNOG00000040442 ## ENSRNOG00000040442|miRNA|| |
| mouse | chromosome:7:3219453:3219592:1 | Same_strand|Boundary_non-coding|ENSMUST00000104838|ENSMUSG00000078032|miRNA|mmu-mir-291b [Source:miRBase;Acc:MI0003539] ## {MIR: mmu-mir-291b} |
| Back to summary page | confident homolog loci of miRBase miRNAs: | Page 1 | Page 2 |
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