========== block822138 (miRBaseHomolog mmu-mir-1903) [miRBaseHomolog_randfoldOK] ========== #randfold block822138: 0.001 randfold mouseZ21p2_block822138: 0.001 #forester mouseZ21p2_block822138: 0.933214 #identity: 100.00 block822138 AACAAGTGTGGGAAAAGGGA #rat_gr24901_libT5S2 20 1 block822138 --------------CTCCTCCCCTC-TTTTTTTCCTCCTTCTTCTTCTTCCTGAGACATGGCCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAATCGGAG------------------- mouseZ21p2 CCTCCTCCTCGCAACTCCTCCCCTCTTTTTTTTCCTCCTTCTTCTTCTTCCTGAGACATGGCCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAATCGGAGCTAAATGACAGGATGCAGG *********** ********************************************************************************************* block822138 >>>>> >>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000014492 ENSRNOG00000010744 Nrp1 block822138 ..... ........... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............. ..... #ENSRNOT00000063540 ENSRNOG00000041787 block822138 (((((((.((( (((((((((..(((.((((((((((.(((.(((.((....)).))).)))..)))))))))).)))...)))))))))))).)))....)))) 1.000 -48.30 # mouseZ21p2 (((..((((..((....(((((((((((((((((((.(((.((((((((((.(((.(((.((....)).))).)))..)))))))))).)))...))))))))))))))).....)))).....))..))))...))) 0.847 -54.30 # #block822138 chromosome:19:58333949:58334052:1 Same_strand|Exonic_non-coding|ENSRNOT00000014492|ENSRNOG00000010744 ## ENSRNOG00000041787|miRNA|| ## ENSRNOG00000010744|protein_coding|Nrp1|Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q9QWJ9] #mouseZ21p2 chromosome:8:130883115:130883252:1 Same_strand|Boundary_non-coding|ENSMUST00000122574|ENSMUSG00000084523|miRNA|mmu-mir-1903 [Source:miRBase;Acc:MI0008317] ## {Repeats: CT-rich 1 class=Low_complexity,dust 0 class=dust} ## {MIR: mmu-mir-1903} ========== block2066481 (miRBaseHomolog mmu-mir-668) [miRBaseHomolog_randfoldOK] ========== #randfold block2066481: 0.001 randfold mouseZ51p3_block2066481: 0.002 #forester mouseZ51p3_block2066481: 0.982786 #identity: 98.44 block2066481 GTAAGTGTGCCTCGGGTGAG #rat_gr627792_libT1S2 20 1 block2066481 GTGCCTCGGGTGAGCATGCACT #rat_gr647640_libT1S2 22 1 block2066481 GGTAAGTGTGCCTCGGGTGAGCATGCACTTAACGTAGGTGTATGTCACTCGGCTCGGCCCACTACCC mouseZ51p3 -GTAAGTGTGCCTCGGGTGAGCATGCACTTAATGTAGGTGTATGTCACTCGGCTCGGCCCACTAC-- ******************************* ******************************** block2066481 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...... #ENSRNOT00000062113 ENSRNOG00000040360 block2066481 (((.((((.(((((((((((.((((((((((...))))))))))))))))))...))).))))))). 1.000 -34.10 # mouseZ51p3 ...((((.(((((((((((.((((((((((...))))))))))))))))))...))).)))).. 1.000 -30.80 # #block2066481 chromosome:6:134416226:134416292:1 Same_strand|Exonic_non-coding|ENSRNOT00000062113|ENSRNOG00000040360 ## ENSRNOG00000040360|miRNA|| #mouseZ51p3 chromosome:12:110972922:110973028:1 Same_strand|Boundary_non-coding|ENSMUST00000102395|ENSMUSG00000076350|miRNA|mmu-mir-668 [Source:miRBase;Acc:MI0004134] ## {MIR: mmu-mir-668} ========== block3193144 (miRBaseHomolog hsa-mir-147b) [miRBaseHomolog_lenNOK_cloningOK_randfoldOK] ========== #randfold block3193144: 0.001 randfold human43p4_block3193144: 0.001 randfold mouse56p4_block3193144: 0.001 #forester human43p4_block3193144: 0.632473 forester mouse56p4_block3193144: 0.583573 #identity: 91.30 block3193144 TGGAAACACTTCTGCACAAAC #rat_gr978306_libT3S2 21 4 block3193144 TGGAAACACTTCTGCACAA #rat_gr978305_libT3S2 19 3 block3193144 GTGGAAACACTTCTGCACAAAC #rat_gr649283_libT5S1 22 2 block3193144 TGGAAACACTTCTGCACAA #rat_gr978305_libT5S2 19 2 block3193144 CTAGTGGAAACACTTCTGCAC #rat_gr413924_libT3S2 21 1 block3193144 TGGAAACACTTCTGCACA #rat_gr978304_libT1S2 18 1 block3193144 TGGAAACACTTCTGCACA #rat_gr978304_libT2S2 18 1 block3193144 TGGAAACACTTCTGCACA #rat_gr978304_libT3S1 18 1 block3193144 TGGAAACACTTCTGCACA #rat_gr978304_libT3S2 18 1 block3193144 TGGAAACACTTCTGCACA #rat_gr978304_libT4S2 18 1 block3193144 TGGAAACACTTCTGCACAAAC #rat_gr978306_libT2S2 21 1 block3193144 TGGAAACACTTCTGCACAAAC #rat_gr978306_libT5S2 21 1 block3193144 -----------CTCTATGAATCTAGTGGAAACACTTCTGCACAAACTGGATTTT-GATGCCAGTGTGCAGAAATGCTTCTGCTACATTCTTAGGGC human43p4 ----------ACTCTATAAATCTAGTGGAAACATTTCTGCACAAACTAGATTCTGGACACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGT mouse56p4 TCCAAAGAACACTCTATGAATCTAGTGGAAACATTTCTGCACAAACTAGATGTT-GATGCCAGTGTGCGGAAATGCTTCTGCTACATTTGTAGGGT ****** *************** ************* *** * ** ********* ******************* ***** block3193144 ..... ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....... #ENSRNOT00000054657 ENSRNOG00000036553 block3193144 (((((.((((.(((..(((.((.((((((((..(((((..... ....))))))))))))).)).)))..))).)))).))))). 1.000 -35.90 # human43p4 ((((((.((((.(((..(((.((((((((((((.........((((...)))))))))))))))).)))..))).)))).)))))) 0.997 -35.60 # mouse56p4 ..........((((((..(((.(((..(((.(((((((((((((((.....))) ........)))))))))))).)))..))).)))..)))))) 0.930 -36.30 # #block3193144 chromosome:X:158880427:158880510:1 Same_strand|Exonic_non-coding|ENSRNOT00000054657|ENSRNOG00000036553 ## ENSRNOG00000036553|miRNA|| #human43p4 chromosome:15:43512536:43512621:1 Same_strand|Intronic_non-coding|ENST00000396655|ENSG00000171763|protein_coding|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand|Boundary_non-coding|ENST00000305560|ENSG00000171763|protein_coding|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand|Exonic_non-coding|ENST00000344300|ENSG00000166920|protein_coding|Normal mucosa of esophagus-specific gene 1 protein (Protein FOAP-11) [Source:UniProtKB/Swiss-Prot;Acc:Q9C002] ## {MIR: hsa-mir-147b} #mouse56p4 chromosome:2:122466525:122466619:1 Same_strand|Exonic_non-coding|ENSMUST00000110512|ENSMUSG00000033213|protein_coding|Normal mucosa of esophagus-specific gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q810Q5] ## Same_strand|Boundary_non-coding|ENSMUST00000102354|ENSMUSG00000076309|miRNA|mmu-mir-147 [Source:miRBase;Acc:MI0005482] ## {MIR: mmu-mir-147} ========== sblock10496 (miRBaseHomolog mmu-mir-1193) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10496: 0.003 randfold humanZ1p83_sblock10496: 0.001 randfold mouseZ1p83_sblock10496: 0.002 #forester humanZ1p83_sblock10496: 0.849804 forester mouseZ1p83_sblock10496: 0.947213 #identity: 91.18 sblock10496 ATGGTAAACCGGTGACGTGC #rat_gr235005_libT1S2 20 1 sblock10496 TGGTAAACCGGTGACGTGC #rat_gr1061247_libT1S1 19 1 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT1S1 22 259 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT1S2 22 198 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT1S1 19 121 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT1S1 21 84 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT1S2 19 77 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT1S2 21 51 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT2S1 21 36 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT2S1 19 32 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT5S2 22 31 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT5S1 22 27 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT1S2 18 26 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT1S1 18 22 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT5S2 19 22 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT5S1 19 15 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT2S2 21 14 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT5S2 21 14 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT2S1 22 14 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT3S2 22 14 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT2S1 18 13 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT4S1 22 12 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT3S1 22 11 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT5S1 21 10 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT3S1 21 8 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT2S2 22 8 sblock10496 TAGGTCACCCGTTTTACTATCC #rat_gr782361_libT4S2 22 8 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT5S1 18 7 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT4S2 19 7 sblock10496 TAGGTCACCCGTTTTACTAT #rat_gr782359_libT1S2 20 7 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT4S1 21 7 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT3S1 19 6 sblock10496 TAGGTCACCCGTTTTACTAT #rat_gr782359_libT1S1 20 6 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT4S2 21 6 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT5S2 18 5 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT2S2 19 5 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT4S1 19 5 sblock10496 TAGGTCACCCGTTTTACTATC #rat_gr782360_libT3S2 21 5 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT2S2 18 4 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT4S2 18 4 sblock10496 TAGGTCACCCGTTTTACTA #rat_gr782358_libT3S2 19 4 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT4S1 18 3 sblock10496 TAGGTCACCCGTTTTACTAT #rat_gr782359_libT2S1 20 3 sblock10496 TAGGTCACCCGTTTTACT #rat_gr782357_libT3S1 18 2 sblock10496 TAGGTCACCCGTTTTACTATCCGC #rat_gr782362_libT1S2 24 2 sblock10496 AGGTCACCCGTTTTACTATCC #rat_gr190947_libT1S2 21 2 sblock10496 TAGGTCACCCGTTTTACTAT #rat_gr782359_libT3S1 20 1 sblock10496 AGGTCACCCGTTTTACTA #rat_gr190945_libT1S2 18 1 sblock10496 AGGTCACCCGTTTTACTA #rat_gr190945_libT4S2 18 1 sblock10496 AGGTCACCCGTTTTACTATC #rat_gr190946_libT1S1 20 1 sblock10496 AGGTCACCCGTTTTACTATC #rat_gr190946_libT5S1 20 1 sblock10496 -----------------GGTGCTTACTGCTCTCAGGGTAGCTGTGAGGATGGTAAACCGGTGACGTGCACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCGCCAGCACCCAGACCGTCTGTGGGATGATACC--------- humanZ1p83 ----------------------------------------------GGATGGTAGACCGGTGACGTGCACTTCATTTACGATGTAGGTCACCCGTTTGACTATCC----------------------------------------- mouseZ1p83 GTGACTGAAGGGACAATGATGCCCACTGTTCTCGGGGTAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACACCCAGACCATCTGTGGGAAGACACCTTGGTGCAC ******** *********** *********** * **************** ******* sblock10496 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ ..... #ENSRNOT00000063357 ENSRNOG00000041604 sblock10496 (((((((((.((..((.((((.((((...(((((((((((.((((((.((((............)))).)))))).)))).)))))))..)))))))).))..))..)))))....)))) 0.710 -47.10 # humanZ1p83 (((((((((((.((((((.((((..((......)))))).)))))).))))).)))))) 1.000 -26.80 # mouseZ1p83 ((((((.((((..........(((((((.(((.(((((...((.(((((((((((((.((((((.((((............)))).)))))).)))).))))))))))))).)))))).))...)))))......))))))).))) 0.917 -54.49 # #sblock10496 chromosome:6:134395196:134395315:1 Same_strand|Exonic_non-coding|ENSRNOT00000063357|ENSRNOG00000041604 ## ENSRNOG00000041604|miRNA|| #humanZ1p83 chromosome:14:100566103:100566262:1 Same_strand|Boundary_non-coding|ENST00000408109|ENSG00000221036|miRNA| #mouseZ1p83 chromosome:12:110953877:110954022:1 Same_strand|Boundary_non-coding|ENSMUST00000116761|ENSMUSG00000080411|miRNA|mmu-mir-1193 [Source:miRBase;Acc:MI0006298] ## {MIR: mmu-mir-1193} ========== sblock10516 (miRBaseHomolog hsa-mir-496) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10516: 0.001 randfold humanZ33p83_sblock10516: 0.001 randfold mouseZ34p83_sblock10516: 0.001 #forester humanZ33p83_sblock10516: 1 forester mouseZ34p83_sblock10516: 0.980829 #identity: 94.09 sblock10516 AAATCAAGTGTTCGAATGG #rat_gr21068_libT1S1 19 1 sblock10516 AGGTTGTCCATGGTGTGTTC #rat_gr193902_libT1S1 20 6 sblock10516 AGGTTGTCCATGGTGTGT #rat_gr193900_libT1S1 18 3 sblock10516 AGGTTGTCCATGGTGTGTT #rat_gr193901_libT1S2 19 2 sblock10516 AGGTTGTCCATGGTGTGTTC #rat_gr193902_libT1S2 20 2 sblock10516 AGGTTGTCCATGGTGTGT #rat_gr193900_libT1S2 18 1 sblock10516 AGGTTGTCCATGGTGTGTTCA #rat_gr193903_libT1S1 21 1 sblock10516 GGTTGTCCATGGTGTGTTCA #rat_gr625652_libT1S1 20 1 sblock10516 GGTTGTCCATGGTGTGTTCAT #rat_gr625653_libT1S1 21 1 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT1S1 21 436 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT1S1 22 364 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT1S2 21 333 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT1S1 18 188 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT1S2 18 171 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT1S2 22 171 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT1S1 18 152 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT1S2 18 126 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT1S1 20 104 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT1S2 20 82 sblock10516 TGAGTATTACATGGCCAATC #rat_gr951624_libT1S1 20 69 sblock10516 TGAGTATTACATGGCCAATCTCC #rat_gr951627_libT1S1 23 63 sblock10516 TGAGTATTACATGGCCAATC #rat_gr951624_libT1S2 20 49 sblock10516 TGAGTATTACATGGCCAATCTCC #rat_gr951627_libT1S2 23 45 sblock10516 TGAGTATTACATGGCCAAT #rat_gr951623_libT1S2 19 21 sblock10516 TGAGTATTACATGGCCAAT #rat_gr951623_libT1S1 19 19 sblock10516 TGAGTATTACATGGCCAATCT #rat_gr951625_libT1S1 21 18 sblock10516 AGTATTACATGGCCAATCT #rat_gr195843_libT1S1 19 14 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT5S2 21 13 sblock10516 AGTATTACATGGCCAATCT #rat_gr195843_libT1S2 19 10 sblock10516 TGAGTATTACATGGCCAATCT #rat_gr951625_libT1S2 21 6 sblock10516 AGTATTACATGGCCAATCTCCT #rat_gr195846_libT1S2 22 6 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT5S2 18 5 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT3S1 21 5 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT5S1 21 5 sblock10516 GAGTATTACATGGCCAATC #rat_gr516205_libT1S1 19 4 sblock10516 GAGTATTACATGGCCAATCTC #rat_gr516206_libT1S2 21 4 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT2S1 20 3 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT3S1 20 3 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT4S1 20 3 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT5S2 20 3 sblock10516 AGTATTACATGGCCAATCTCCT #rat_gr195846_libT1S1 22 3 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT5S1 22 2 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT5S2 22 2 sblock10516 GAGTATTACATGGCCAATCTC #rat_gr516206_libT1S1 21 2 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT2S1 18 2 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT3S1 18 2 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT4S1 21 2 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT2S1 18 1 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT3S2 18 1 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT4S1 18 1 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT5S1 18 1 sblock10516 TGAGTATTACATGGCCAA #rat_gr951622_libT5S2 18 1 sblock10516 TGAGTATTACATGGCCAAT #rat_gr951623_libT5S2 19 1 sblock10516 TGAGTATTACATGGCCAATCT #rat_gr951625_libT2S1 21 1 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT2S2 22 1 sblock10516 TGAGTATTACATGGCCAATCTC #rat_gr951626_libT3S2 22 1 sblock10516 TGAGTATTACATGGCCAATCTCC #rat_gr951627_libT4S2 23 1 sblock10516 GAGTATTACATGGCCAAT #rat_gr516204_libT1S2 18 1 sblock10516 GAGTATTACATGGCCAATC #rat_gr516205_libT1S2 19 1 sblock10516 GAGTATTACATGGCCAATCTCC #rat_gr516207_libT1S1 22 1 sblock10516 GAGTATTACATGGCCAATCTCC #rat_gr516207_libT1S2 22 1 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT3S2 18 1 sblock10516 AGTATTACATGGCCAATC #rat_gr195842_libT5S1 18 1 sblock10516 AGTATTACATGGCCAATCT #rat_gr195843_libT3S2 19 1 sblock10516 AGTATTACATGGCCAATCTC #rat_gr195844_libT3S2 20 1 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT2S1 21 1 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT2S2 21 1 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT3S2 21 1 sblock10516 AGTATTACATGGCCAATCTCC #rat_gr195845_libT4S2 21 1 sblock10516 GTATTACATGGCCAATCT #rat_gr631538_libT1S2 18 1 sblock10516 GTATTACATGGCCAATCTCC #rat_gr631539_libT1S2 20 1 sblock10516 CTCTCGAAATCAAGTGTTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAG---------- humanZ33p83 ---CCCAAGTCAGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTCAATTCTTCTTGGGAAACGTCACGAG mouseZ34p83 -----------------------GGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCC------------------------------------ ******** ************************************************* sblock10516 .........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... #ENSRNOT00000062159 ENSRNOG00000040406 sblock10516 ((((((((....((((.(((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))......)))..))))) 0.980 -39.50 # humanZ33p83 ((((((...(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........))))))............ 0.939 -44.20 # mouseZ34p83 ((((((((.(((((..(((((((((........)))))))))..))))).)))))))) 1.000 -24.60 # #sblock10516 chromosome:6:134420356:134420462:1 Same_strand|Exonic_non-coding|ENSRNOT00000062159|ENSRNOG00000040406 ## ENSRNOG00000040406|miRNA|| #humanZ33p83 chromosome:14:100596663:100596776:1 Same_strand|Boundary_non-coding|ENST00000385226|ENSG00000207961|miRNA|hsa-mir-496 [Source:miRBase;Acc:MI0003136] ## {MIR: hsa-mir-496} #mouseZ34p83 chromosome:12:110977297:110977443:1 Same_strand|Boundary_non-coding|ENSMUST00000093627|ENSMUSG00000070136|miRNA|mmu-mir-496 [Source:miRBase;Acc:MI0004589] ## {MIR: mmu-mir-496} ========== sblock10789 (miRBaseHomolog hsa-mir-1251) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10789: 0.001 randfold humanZ10p84_sblock10789: 0.017 randfold mouseZ19p84_sblock10789: 0.002 #forester humanZ10p84_sblock10789: 1 forester mouseZ19p84_sblock10789: 1 #identity: 98.69 sblock10789 CGCTTTGCTCAGCCAGTGTAG #rat_gr395974_libT1S1 21 7 sblock10789 AGCGCTTTGCTCAGCCAGTGT #rat_gr162122_libT1S2 21 5 sblock10789 CGCTTTGCTCAGCCAGTGTAG #rat_gr395974_libT1S2 21 4 sblock10789 AGCGCTTTGCTCAGCCAGTGT #rat_gr162122_libT1S1 21 4 sblock10789 AGCGCTTTGCTCAGCCAGTGTAG #rat_gr162123_libT1S2 23 3 sblock10789 GCGCTTTGCTCAGCCAGTGTAG #rat_gr563538_libT1S1 22 1 sblock10789 CGCTTTGCTCAGCCAGTGT #rat_gr395973_libT1S1 19 1 sblock10789 CGCTTTGCTCAGCCAGTGT #rat_gr395973_libT1S2 19 1 sblock10789 AGCGCTTTGCTCAGCCAGT #rat_gr162121_libT1S1 19 1 sblock10789 AGCGCTTTGCTCAGCCAGT #rat_gr162121_libT1S2 19 1 sblock10789 AGCGCTTTGCTCAGCCAG #rat_gr162120_libT1S2 18 1 sblock10789 ACTCTAGCTGCCAAAGGC #rat_gr120071_libT1S2 18 3 sblock10789 ACTCTAGCTGCCAAAGGC #rat_gr120071_libT1S1 18 1 sblock10789 -------------TCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACAATGGA-------------- humanZ10p84 CTCCACCCGAGCGTCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACAATGGAACTTCTCCCTTGAG mouseZ19p84 ----------CCATCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACACTGGA-------------- ************************************************************************************************ **** sblock10789 ..... ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... ..... #ENSRNOT00000063203 ENSRNOG00000041450 sblock10789 ((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).)))) 1.000 -39.70 # humanZ10p84 (((.....(((..((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).))))....)))....))) 0.975 -43.70 # mouseZ19p84 ...((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).)))) 1.000 -40.00 # #sblock10789 chromosome:7:29141757:29141857:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063203|ENSRNOG00000041450 ## ENSRNOG00000041450|miRNA|| #humanZ10p84 chromosome:12:96409789:96409916:1 Same_strand|Boundary_non-coding|ENST00000408552|ENSG00000221479|miRNA|hsa-mir-1251 [Source:miRBase;Acc:MI0006386] ## {MIR: hsa-mir-1251} #mouseZ19p84 chromosome:10:91599875:91599978:-1 Same_strand|Boundary_non-coding|ENSMUST00000116882|ENSMUSG00000080532|miRNA| ========== sblock11522 (miRBaseHomolog hsa-mir-615) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock11522: 0.001 randfold humanZ34p84_sblock11522: 0.001 randfold mouseZ49p84_sblock11522: 0.001 #forester humanZ34p84_sblock11522: 0.83812 forester mouseZ49p84_sblock11522: 0.83812 #identity: 100.00 sblock11522 GGGGGTCCCCGGTGCTCGGA #rat_gr613082_libT5S1 20 2 sblock11522 GGGGGTCCCCGGTGCTCGGA #rat_gr613082_libT5S2 20 2 sblock11522 GGGGGTCCCCGGTGCTCGGATC #rat_gr613083_libT5S1 22 2 sblock11522 GGGGGTCCCCGGTGCTCGGATC #rat_gr613083_libT5S2 22 2 sblock11522 GGGGTCCCCGGTGCTCGGATCT #rat_gr613656_libT5S1 22 2 sblock11522 GGGGGTCCCCGGTGCTCG #rat_gr613080_libT5S2 18 1 sblock11522 GGGGGTCCCCGGTGCTCGG #rat_gr613081_libT5S2 19 1 sblock11522 GGGGGTCCCCGGTGCTCGGATCTC #rat_gr613084_libT5S1 24 1 sblock11522 GGGGTCCCCGGTGCTCGGA #rat_gr613655_libT5S1 19 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT5S1 21 216 sblock11522 TCCGAGCCTGGGTCTCCCTCTTC #rat_gr866899_libT5S1 23 91 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT5S1 18 90 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT5S1 20 74 sblock11522 TCCGAGCCTGGGTCTCCCTCTT #rat_gr866898_libT5S1 22 49 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT5S2 21 44 sblock11522 TCCGAGCCTGGGTCTCCCTCTTC #rat_gr866899_libT5S2 23 26 sblock11522 TCCGAGCCTGGGTCTCCCT #rat_gr866895_libT5S1 19 21 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT5S2 18 17 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT5S2 20 16 sblock11522 TCCGAGCCTGGGTCTCCCTCTT #rat_gr866898_libT5S2 22 11 sblock11522 TCCGAGCCTGGGTCTCCCT #rat_gr866895_libT5S2 19 10 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT3S1 18 5 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT3S1 21 5 sblock11522 CCGAGCCTGGGTCTCCCTCT #rat_gr366130_libT5S1 20 5 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT3S1 20 3 sblock11522 CCGAGCCTGGGTCTCCCTCTTC #rat_gr366131_libT5S1 22 3 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT1S1 18 2 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT3S2 18 2 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT3S2 20 2 sblock11522 TCCGAGCCTGGGTCTCCCTCTTC #rat_gr866899_libT3S1 23 2 sblock11522 TCCGAGCCTGGGTCTCCCTCTTCC #rat_gr866900_libT5S1 24 2 sblock11522 GAGCCTGGGTCTCCCTCT #rat_gr509480_libT5S1 18 2 sblock11522 TCGGTCCGAGCCTGGGTCTCCC #rat_gr890735_libT5S2 22 1 sblock11522 GTCCGAGCCTGGGTCTCCCTC #rat_gr637929_libT5S1 21 1 sblock11522 TCCGAGCCTGGGTCTCCC #rat_gr866894_libT4S1 18 1 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT1S2 20 1 sblock11522 TCCGAGCCTGGGTCTCCCTC #rat_gr866896_libT2S1 20 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT1S1 21 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT2S1 21 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT2S2 21 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT3S2 21 1 sblock11522 TCCGAGCCTGGGTCTCCCTCT #rat_gr866897_libT4S1 21 1 sblock11522 TCCGAGCCTGGGTCTCCCTCTT #rat_gr866898_libT3S2 22 1 sblock11522 TCCGAGCCTGGGTCTCCCTCTTC #rat_gr866899_libT3S2 23 1 sblock11522 TCCGAGCCTGGGTCTCCCTCTTCC #rat_gr866900_libT4S1 24 1 sblock11522 -------------------GAGGATTCCAGCGACTCGGGAGGGGCGGGAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTTCCCCCCATCCCCCCTCAGCCCCTC------------------ humanZ34p84 -----------------------------------------------GAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTT------------------------------------------ mouseZ49p84 GCCAGTGCTCGCGGCTCCGGAGGATTCCAGCGACTCGGGAGGGGCGGGAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTTCCCCCCATCCCCCCTCAGCCCCTCCGGCCGCAGAGTGAAGGC ******************************************************************** sblock11522 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000022247 ENSRNOG00000016598 NP_001101586.1 sblock11522 ..... ...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............. ..... #ENSRNOT00000054621 ENSRNOG00000036514 sblock11522 ((((......((((...((((((((.((((((((((..(((((.(((((((((..((.(((....))).)).))))))))))))))..)))))))))))))).))))...)).)).)))) 0.530 -64.80 # humanZ34p84 ((((((((..(((((.(((((((((..((.(((....))).)).)))))))))))))))))))))).. 1.000 -38.10 # mouseZ49p84 (((..((((((((((..((((((......((((...((((((((.((((((((((..(((((.(((((((((..((.(((....))).)).))))))))))))))..)))))))))))))).))))...)).)).))))))))))).)))))..))) 0.914 -91.40 # #sblock11522 chromosome:7:141778215:141778334:1 Same_strand|Exonic_non-coding|ENSRNOT00000054621|ENSRNOG00000036514 ## Same_strand|Intronic_coding|ENSRNOT00000022247|ENSRNOG00000016598 ## ENSRNOG00000016598|protein_coding|NP_001101586.1|homeo box C5 [Source:RefSeq_peptide;Acc:NP_001101586] ## ENSRNOG00000036514|miRNA|| ## {Repeats: dust 141778334 141778335 0 class=dust} ## {SimpF: oe = 0.80 1 CpG} #humanZ34p84 chromosome:12:52713967:52714126:1 Same_strand|Intronic_non-coding|ENST00000303406|ENSG00000198353|protein_coding|Homeobox protein Hox-C4 (Hox-3E)(CP19) [Source:UniProtKB/Swiss-Prot;Acc:P09017] ## Same_strand|Intronic_coding|ENST00000312492|ENSG00000172789|protein_coding|Homeobox protein Hox-C5 (Hox-3D)(CP11) [Source:UniProtKB/Swiss-Prot;Acc:Q00444] ## Same_strand|Boundary_non-coding|ENST00000384839|ENSG00000207571|miRNA|hsa-mir-615 [Source:miRBase;Acc:MI0003628] ## {Repeats: dust 0 class=dust} ## {SimpF: oe = 0.77 0 CpG,rank = 2 -1 FirstEF, -1 Eponine} ## {MIR: hsa-mir-615} #mouseZ49p84 chromosome:15:102845307:102845463:1 Same_strand|Intronic_coding|ENSMUST00000001709|ENSMUSG00000022485|protein_coding|homeo box C5 Gene [Source:MGI Symbol;Acc:MGI:96196] ## Same_strand|Boundary_non-coding|ENSMUST00000102056|ENSMUSG00000076010|miRNA|mmu-mir-615 [Source:miRBase;Acc:MI0005004] ## {Repeats: dust 0 class=dust} ## {SimpF: oe = 0.81 -1 CpG} ## {MIR: mmu-mir-615} ========== sblock12652 (miRBaseHomolog mmu-mir-764) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12652: 0.001 randfold humanZ44p85_sblock12652: 0.002 randfold mouseZ66p85_sblock12652: 0.001 #forester humanZ44p85_sblock12652: 0.689175 forester mouseZ66p85_sblock12652: 0.847856 #identity: 92.27 sblock12652 GAGGAGGCCATAGTGGCAACTGTC #rat_gr512302_libT1S2 24 82 sblock12652 GAGGAGGCCATAGTGGCAACTGTC #rat_gr512302_libT1S1 24 67 sblock12652 GAGGAGGCCATAGTGGCAACT #rat_gr512299_libT1S2 21 30 sblock12652 GAGGAGGCCATAGTGGCAACT #rat_gr512299_libT1S1 21 21 sblock12652 GAGGAGGCCATAGTGGCAAC #rat_gr512298_libT1S2 20 13 sblock12652 GAGGAGGCCATAGTGGCAACTG #rat_gr512300_libT1S1 22 7 sblock12652 GAGGAGGCCATAGTGGCAAC #rat_gr512298_libT1S1 20 7 sblock12652 AGGAGGCCATAGTGGCAACTGTC #rat_gr173902_libT1S2 23 4 sblock12652 GAGGAGGCCATAGTGGCAACTG #rat_gr512300_libT1S2 22 4 sblock12652 AGGAGGCCATAGTGGCAACT #rat_gr173901_libT1S2 20 3 sblock12652 GAGGAGGCCATAGTGGCAA #rat_gr512297_libT1S2 19 3 sblock12652 AGGAGGCCATAGTGGCAACTGTC #rat_gr173902_libT1S1 23 2 sblock12652 GAGGAGGCCATAGTGGCAACTGT #rat_gr512301_libT1S1 23 2 sblock12652 AGGAGGCCATAGTGGCAACT #rat_gr173901_libT1S1 20 2 sblock12652 GAGGAGGCCATAGTGGCA #rat_gr512296_libT1S2 18 2 sblock12652 GAGGAGGCCATAGTGGCAACTGTC #rat_gr512302_libT2S2 24 1 sblock12652 GGAGGAGGCCATAGTGGCAACTGTC #rat_gr588760_libT1S1 25 1 sblock12652 TGGAGGAGGCCATAGTGGCAACTGTC #rat_gr999398_libT1S1 26 1 sblock12652 GAGGAGGCCATAGTGGCAACTGT #rat_gr512301_libT1S2 23 1 sblock12652 GGAGGAGGCCATAGTGGCAACT #rat_gr588759_libT1S1 22 1 sblock12652 TGGAGGAGGCCATAGTGGCAACT #rat_gr999397_libT1S2 23 1 sblock12652 AGGAGGCCATAGTGGCAA #rat_gr173900_libT1S2 18 1 sblock12652 GGTGCTCACATGTCCTCCTCCA #rat_gr621729_libT1S1 22 90 sblock12652 GGTGCTCACATGTCCTCCTCCA #rat_gr621729_libT1S2 22 82 sblock12652 GGTGCTCACATGTCCTCC #rat_gr621725_libT1S2 18 28 sblock12652 GGTGCTCACATGTCCTCC #rat_gr621725_libT1S1 18 25 sblock12652 GGTGCTCACATGTCCTCCTC #rat_gr621727_libT1S1 20 22 sblock12652 GGTGCTCACATGTCCTCCTCC #rat_gr621728_libT1S2 21 18 sblock12652 GGTGCTCACATGTCCTCCTCC #rat_gr621728_libT1S1 21 17 sblock12652 GGTGCTCACATGTCCTCCTC #rat_gr621727_libT1S2 20 15 sblock12652 GGTGCTCACATGTCCTCCTCCAT #rat_gr621730_libT1S2 23 14 sblock12652 GGTGCTCACATGTCCTCCTCCAT #rat_gr621730_libT1S1 23 6 sblock12652 GGTGCTCACATGTCCTCCT #rat_gr621726_libT1S1 19 4 sblock12652 GGTGCTCACATGTCCTCCT #rat_gr621726_libT1S2 19 3 sblock12652 GGTGCTCACATGTCCTCCTCCAT #rat_gr621730_libT5S2 23 1 sblock12652 GGTGCTCACATGTCCTCCTCCA #rat_gr621729_libT5S1 22 1 sblock12652 GGTGCTCACATGTCCTCCTC #rat_gr621727_libT5S2 20 1 sblock12652 GGTGCTCACATGTCCTCC #rat_gr621725_libT3S2 18 1 sblock12652 ------------------TCAACACAATCAAAATCTCGGAGGCAGGTGCTCACATGTCCTCCTCCATGCCT-ACACATACATGGAGGAGGCCATAGTGGCAACTGTCACCATGATTGATTTCGTTGGG------------------ humanZ44p85 ------------------------------------------CAGGTGCTCACTTGTCCTCCTCCATGCTTGGAAAATGCAGGGAGGAGGCCATAGTGGCAACTG----------------------------------------- mouseZ66p85 GGTTATCGTGTCATAGTATCAACACAATCTGAATCTTGGAGGCAGGTGCTCACATGTCCTCCTCCATGCTT-ATAAATACATGGAGGAGGCCATAGTGGCAACTGTCACCATGATTGATTTCGTTGGGATAGAAGATTGACAAGCC *********** *************** * * ** ** *********************** sblock12652 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>. ..... #ENSRNOT00000062180 ENSRNOG00000040427 sblock12652 (((((..(((((..(((..((.(((((.(((.((((((.(((((((((((... .......))))))))))).))).)))))).))))).))..))))))))..))))). 1.000 -49.20 # humanZ44p85 (((.(((.((((((.((((((((.(((((....)).))).)))))))).)).))))))).))) 1.000 -33.10 # mouseZ66p85 ((((....(((((.....(((((..((((..((((.(((.(((((.(((.((((((.(((((((((((... .......))))))))))).))).)))))).))))).))).))))))))..)))))..........))))))))) 0.987 -55.56 # #sblock12652 chromosome:X:31207233:31207341:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062180|ENSRNOG00000040427 ## ENSRNOG00000040427|miRNA|| #humanZ44p85 chromosome:X:113780142:113780290:1 Same_strand|Intronic_non-coding|ENST00000371950|ENSG00000147246|protein_coding|5-hydroxytryptamine receptor 2C (5-HTR2C)(5-HT-2C)(5-HT2C)(5HT-1C)(Serotonin receptor 2C) [Source:UniProtKB/Swiss-Prot;Acc:P28335] ## Same_strand|Boundary_non-coding|ENST00000390811|ENSG00000212100|miRNA| #mouseZ66p85 chromosome:X:143436784:143436928:1 Same_strand|Intronic_non-coding|ENSMUST00000112831|ENSMUSG00000041380|protein_coding|5-hydroxytryptamine (serotonin) receptor 2C Gene [Source:MGI (curated);Acc:Htr2c-002] ## Same_strand|Boundary_non-coding|ENSMUST00000103259|ENSMUSG00000076458|miRNA|mmu-mir-764 [Source:miRBase;Acc:MI0004310] ## {MIR: mmu-mir-764} ========== sblock12718 (miRBaseHomolog hsa-mir-18b) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK] ========== #randfold sblock12718: 0.123 randfold humanZ16p86_sblock12718: 0.002 randfold mouseZ46p86_sblock12718: 0.043 #forester humanZ16p86_sblock12718: 0.348219 forester mouseZ46p86_sblock12718: 0.471371 #identity: 93.19 sblock12718 ACTGCCCTAAATGCCCCTTCTC #rat_gr123258_libT3S2 22 5 sblock12718 TACTGCCCTAAATGCCCCTTCTC #rat_gr755336_libT3S1 23 4 sblock12718 TACTGCCCTAAATGCCCCTTCTC #rat_gr755336_libT3S2 23 4 sblock12718 TACTGCCCTAAATGCCCC #rat_gr755332_libT3S2 18 4 sblock12718 TACTGCCCTAAATGCCCCTTCT #rat_gr755335_libT3S2 22 3 sblock12718 ACTGCCCTAAATGCCCCTT #rat_gr123255_libT3S1 19 3 sblock12718 TACTGCCCTAAATGCCCCT #rat_gr755333_libT3S1 19 3 sblock12718 TACTGCCCTAAATGCCCCT #rat_gr755333_libT3S2 19 3 sblock12718 TGCCCTAAATGCCCCTTCTC #rat_gr966444_libT3S2 20 2 sblock12718 TACTGCCCTAAATGCCCCT #rat_gr755333_libT4S2 19 2 sblock12718 TACTGCCCTAAATGCCCC #rat_gr755332_libT3S1 18 2 sblock12718 TGCCCTAAATGCCCCTTCTCGCAC #rat_gr966445_libT1S2 24 1 sblock12718 ACTGCCCTAAATGCCCCTTCTCG #rat_gr123259_libT3S2 23 1 sblock12718 TGCCCTAAATGCCCCTTCTC #rat_gr966444_libT5S1 20 1 sblock12718 ACTGCCCTAAATGCCCCTTCTC #rat_gr123258_libT2S2 22 1 sblock12718 ACTGCCCTAAATGCCCCTTCTC #rat_gr123258_libT3S1 22 1 sblock12718 TACTGCCCTAAATGCCCCTTCTC #rat_gr755336_libT5S1 23 1 sblock12718 ACTGCCCTAAATGCCCCTTCT #rat_gr123257_libT3S2 21 1 sblock12718 ACTGCCCTAAATGCCCCTTCT #rat_gr123257_libT5S1 21 1 sblock12718 TACTGCCCTAAATGCCCCTTCT #rat_gr755335_libT1S1 22 1 sblock12718 TACTGCCCTAAATGCCCCTTCT #rat_gr755335_libT5S2 22 1 sblock12718 TGCCCTAAATGCCCCTTC #rat_gr966443_libT3S1 18 1 sblock12718 TGCCCTAAATGCCCCTTC #rat_gr966443_libT3S2 18 1 sblock12718 ACTGCCCTAAATGCCCCTTC #rat_gr123256_libT3S1 20 1 sblock12718 ACTGCCCTAAATGCCCCTTC #rat_gr123256_libT3S2 20 1 sblock12718 ACTGCCCTAAATGCCCCTT #rat_gr123255_libT4S2 19 1 sblock12718 TACTGCCCTAAATGCCCCTT #rat_gr755334_libT3S1 20 1 sblock12718 ACTGCCCTAAATGCCCCT #rat_gr123254_libT1S1 18 1 sblock12718 ACTGCCCTAAATGCCCCT #rat_gr123254_libT3S1 18 1 sblock12718 ACTGCCCTAAATGCCCCT #rat_gr123254_libT4S2 18 1 sblock12718 TACTGCCCTAAATGCCCCT #rat_gr755333_libT5S2 19 1 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT3S1 18 29 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT3S2 18 13 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT3S2 19 12 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT3S1 19 11 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT1S2 18 5 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT1S1 19 4 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT4S2 18 3 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT5S1 18 3 sblock12718 AAGGTGCATCTAGTGCTGT #rat_gr54013_libT3S1 19 2 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT2S2 19 2 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT5S2 19 2 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT2S2 18 2 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT4S1 18 2 sblock12718 TAAGGTGCATCTAGTGCTGTTAG #rat_gr728368_libT3S1 23 1 sblock12718 TAAGGTGCATCTAGTGCTGTTAG #rat_gr728368_libT3S2 23 1 sblock12718 TAAGGTGCATCTAGTGCTGT #rat_gr728367_libT3S2 20 1 sblock12718 TAAGGTGCATCTAGTGCTGT #rat_gr728367_libT4S2 20 1 sblock12718 TAAGGTGCATCTAGTGCTG #rat_gr728366_libT5S1 19 1 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT1S1 18 1 sblock12718 TAAGGTGCATCTAGTGCT #rat_gr728365_libT5S2 18 1 sblock12718 CTCCTTGTAATGTGTCTCTT #rat_gr427182_libT1S1 20 1 sblock12718 ------------TGCTCCTTGTAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTATAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTACTGCTTACTCCGCA------------ humanZ16p86 ATGCTTTTGAGCTGCTTCTTATAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGAAGCAGCTTAGAATCTACTGCCCTAAATGCCCCTTCTGGCACAGGCTGCCTAATATACAGCATTTTAAAAGTAT mouseZ46p86 --------------------------------------TAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTC-------------------------------------- ***************** ***************** ************************* sblock12718 ..... ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. ..... #ENSRNOT00000063045 ENSRNOG00000041292 sblock12718 .((.....((((.((((..(((((((.((((.((((.(((.((((((.....))))))...............))).)))).))))...)))))))..)).))))))...)). 0.830 -27.79 # humanZ16p86 (((((((((((.((((...((((.((.((..((((((((((((.((((.(((.(((((..((.(((...)))...))..))))).))).)))).)))..)))))))))..)).)).)))).)))).))))))))))) 0.999 -43.50 # mouseZ46p86 .((((.((((.(((.((.((..((((......)))).....)).)).))).)))).)))). 0.692 -14.50 # #sblock12718 chromosome:X:139741265:139741377:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## Same_strand|Boundary_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## ENSRNOG00000041292|miRNA|| #humanZ16p86 chromosome:X:133131704:133131840:-1 intergenic ## {MIR: hsa-mir-18b} #mouseZ46p86 chromosome:X:50095474:50095626:-1 Same_strand|Boundary_non-coding|ENSMUST00000103923|ENSMUSG00000077111|miRNA|mmu-mir-18b [Source:miRBase;Acc:MI0005483] ## {MIR: mmu-mir-18b} ========== sblock12776 (miRBaseHomolog hsa-mir-362) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12776: 0.001 randfold humanZ10p87_sblock12776: 0.001 randfold mouseZ23p87_sblock12776: 0.001 #forester humanZ10p87_sblock12776: 0.77479 forester mouseZ23p87_sblock12776: 0.9587 #identity: 94.66 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT3S1 21 236 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT3S2 21 158 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT3S1 22 91 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT3S2 22 80 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT3S1 19 73 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT5S2 22 70 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT5S2 21 67 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT4S2 21 61 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT3S2 19 60 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT4S1 21 57 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT2S1 21 55 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT2S2 21 50 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT2S2 22 49 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT5S1 21 48 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT3S1 18 41 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT5S2 19 40 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT3S2 18 39 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT1S1 21 36 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT4S2 22 30 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT2S2 19 27 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT3S1 20 25 sblock12776 AATCCTTGGAACCTAGGTGTG #rat_gr61398_libT1S2 21 25 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT3S2 20 24 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT3S1 23 21 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT4S1 22 20 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT2S2 18 18 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT5S2 18 18 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT4S2 19 18 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT1S1 22 16 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT1S1 19 14 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT2S1 19 14 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT4S2 18 13 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT5S1 18 12 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT4S1 19 12 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT2S1 18 11 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT4S2 20 11 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT5S2 20 11 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT1S1 18 10 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT5S1 19 10 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT4S1 18 9 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT4S1 20 9 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT2S1 22 9 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT5S1 22 9 sblock12776 AATCCTTGGAACCTAGGTG #rat_gr61396_libT1S2 19 8 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT2S2 20 8 sblock12776 AATCCTTGGAACCTAGGT #rat_gr61395_libT1S2 18 7 sblock12776 AATCCTTGGAACCTAGGTGTGA #rat_gr61399_libT1S2 22 6 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT3S2 23 6 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT5S2 23 6 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT1S1 20 3 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT2S2 23 3 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT4S2 23 3 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT1S2 20 2 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT2S1 20 2 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT2S1 23 2 sblock12776 CCTTGGAACCTAGGTGTGAATGC #rat_gr385625_libT3S2 23 2 sblock12776 AATCCTTGGAACCTAGGTGT #rat_gr61397_libT5S1 20 1 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT1S1 23 1 sblock12776 AATCCTTGGAACCTAGGTGTGAA #rat_gr61400_libT4S1 23 1 sblock12776 AATCCTTGGAACCTAGGTGTGAAT #rat_gr61401_libT2S2 24 1 sblock12776 ATCCTTGGAACCTAGGTG #rat_gr222108_libT2S1 18 1 sblock12776 ATCCTTGGAACCTAGGTG #rat_gr222108_libT3S1 18 1 sblock12776 ATCCTTGGAACCTAGGTGTGA #rat_gr222109_libT3S2 21 1 sblock12776 ATCCTTGGAACCTAGGTGTGA #rat_gr222109_libT4S1 21 1 sblock12776 CCTTGGAACCTAGGTGTGA #rat_gr385624_libT3S2 19 1 sblock12776 CTTGGAACCTAGGTGTGAA #rat_gr466018_libT3S2 19 1 sblock12776 TGGAACCTAGGTGTGAATGC #rat_gr982509_libT2S2 20 1 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT3S1 22 326 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT3S2 22 245 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT3S1 21 189 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT3S2 21 173 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT3S1 19 164 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT3S1 23 146 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT2S2 22 136 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT3S2 18 128 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT3S2 19 124 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT3S1 18 115 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT5S2 22 105 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT3S2 23 96 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT4S2 22 95 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT2S1 22 91 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT5S1 22 88 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT5S2 18 85 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT2S2 23 80 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT1S1 22 79 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT2S2 18 72 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT2S2 21 68 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT5S2 21 68 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT2S2 19 65 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT4S2 21 65 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT5S2 19 63 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT1S2 22 61 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT1S1 19 60 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT2S1 21 60 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT1S1 21 55 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT2S1 19 53 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT5S1 21 49 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT4S2 19 48 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT1S1 23 48 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT2S1 23 47 sblock12776 AACACACCTGTTCAAGGATTCA #rat_gr25669_libT4S1 22 46 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT5S1 23 46 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT4S2 23 45 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT3S1 20 44 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT1S2 18 40 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT2S1 18 40 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT5S1 19 39 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT4S2 18 37 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT3S2 20 37 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT5S2 23 37 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT5S1 18 34 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT1S2 23 34 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT1S2 19 33 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT1S2 21 33 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT1S1 18 31 sblock12776 AACACACCTGTTCAAGGAT #rat_gr25666_libT4S1 19 30 sblock12776 AACACACCTGTTCAAGGATTCAA #rat_gr25670_libT4S1 23 30 sblock12776 AACACACCTGTTCAAGGATTC #rat_gr25668_libT4S1 21 28 sblock12776 AACACACCTGTTCAAGGA #rat_gr25665_libT4S1 18 25 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT1S1 20 21 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT2S2 20 15 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT5S2 20 15 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT2S1 20 13 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT5S1 20 13 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT4S1 20 11 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT4S2 20 10 sblock12776 AACACACCTGTTCAAGGATT #rat_gr25667_libT1S2 20 9 sblock12776 CAACACACCTGTTCAAGGATTCA #rat_gr263432_libT3S2 23 3 sblock12776 CAACACACCTGTTCAAGGA #rat_gr263430_libT2S2 19 2 sblock12776 CAACACACCTGTTCAAGGAT #rat_gr263431_libT4S2 20 2 sblock12776 CAACACACCTGTTCAAGG #rat_gr263429_libT2S2 18 1 sblock12776 CAACACACCTGTTCAAGGA #rat_gr263430_libT3S2 19 1 sblock12776 AACACACCTGTTCAAGGATTCAAA #rat_gr25671_libT2S2 24 1 sblock12776 AACACACCTGTTCAAGGATTCAAA #rat_gr25671_libT3S2 24 1 sblock12776 AACACACCTGTTCAAGGATTCAAA #rat_gr25671_libT5S2 24 1 sblock12776 ACACACCTGTTCAAGGAT #rat_gr72386_libT1S2 18 1 sblock12776 CACACCTGTTCAAGGATTCA #rat_gr277185_libT2S2 20 1 sblock12776 ACACCTGTTCAAGGATTCAA #rat_gr74607_libT2S1 20 1 sblock12776 TGAGTCTTCTTGCTTGCTCCGCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTCGTCTGCGTGTTTGGCCCA humanZ10p87 --------------------------TGAATCCTTGGAACCTAGGTGTGAGTGCTATTTCAGTGCAACACACCTATTCAAGGATTCA--------------------------------- mouseZ23p87 ---------------GCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGC--------------------- *********************** **** ***************** ************ sblock12776 .............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................................... #ENSRNOT00000054391 ENSRNOG00000036268 sblock12776 ((.(((....(((..((((.((((((.(((((((((((...((((((((..(((.((....))))).)))))))))))))))))))..)))))).)))).......))).....))).)) 0.730 -48.70 # humanZ10p87 .(((((((((((...((((((((.(((((.....)))))..))))))))))))))))))). 1.000 -29.80 # mouseZ23p87 ((((..(((((.(((((((((((...((((((((..(((.((....))))).)))))))))))))))))))..)))))..)))) 1.000 -40.80 # #sblock12776 chromosome:X:27330423:27330542:1 Same_strand|Exonic_non-coding|ENSRNOT00000054391|ENSRNOG00000036268 ## ENSRNOG00000036268|miRNA|| #humanZ10p87 chromosome:X:49660268:49660427:1 Same_strand|Intronic_non-coding|ENST00000376091|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## Same_strand|Boundary_non-coding|ENST00000307367|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## {MIR: hsa-mir-362} #mouseZ23p87 chromosome:X:6819098:6819181:-1 Same_strand|Boundary_non-coding|ENSMUST00000004428|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## Same_strand|Intronic_coding|ENSMUST00000115746|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## {MIR: mmu-mir-362} ========== sblock3034 (miRBaseHomolog mmu-mir-1224) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK] ========== #randfold sblock3034: 0.001 randfold mouseZ5p90_sblock3034: 0.001 #forester mouseZ5p90_sblock3034: 0.845746 #identity: 97.65 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT1S2 21 178 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT1S1 21 166 sblock3034 CCCCACCTCTTCTCTCCT #rat_gr347606_libT1S1 18 39 sblock3034 CCCCACCTCTTCTCTCCT #rat_gr347606_libT1S2 18 38 sblock3034 CCCCACCTCTTCTCTCCTC #rat_gr347607_libT1S1 19 22 sblock3034 CCCCACCTCTTCTCTCCTC #rat_gr347607_libT1S2 19 22 sblock3034 CCCCACCTCTTCTCTCCTCA #rat_gr347608_libT1S2 20 21 sblock3034 CCCCACCTCTTCTCTCCTCA #rat_gr347608_libT1S1 20 15 sblock3034 CCCCACCTCTTCTCTCCTCAGG #rat_gr347612_libT1S1 22 6 sblock3034 CCCCACCTCTTCTCTCCTCAGG #rat_gr347612_libT1S2 22 5 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT3S2 21 5 sblock3034 CCCCACCTCTTCTCTCCTCAGGT #rat_gr347613_libT1S1 23 4 sblock3034 CCCCACCTCTTCTCTCCTCAGGT #rat_gr347613_libT1S2 23 4 sblock3034 CCCACCTCTTCTCTCCTCAG #rat_gr341847_libT1S1 20 4 sblock3034 CCCACCTCTTCTCTCCTCAG #rat_gr341847_libT1S2 20 4 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT2S1 21 3 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT2S2 21 3 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT4S1 21 2 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT4S2 21 2 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT5S1 21 2 sblock3034 CCCCACCTCTTCTCTCCTCA #rat_gr347608_libT3S1 20 2 sblock3034 CCCACCTCTTCTCTCCTC #rat_gr341844_libT1S1 18 2 sblock3034 CCCCACCTCTTCTCTCCT #rat_gr347606_libT5S2 18 2 sblock3034 CCCCACCTCTTCTCTCCTCAGGTA #rat_gr347614_libT1S1 24 1 sblock3034 CCCCACCTCTTCTCTCCTCAGGTA #rat_gr347614_libT1S2 24 1 sblock3034 CCCCACCTCTTCTCTCCTCAGGT #rat_gr347613_libT2S1 23 1 sblock3034 CCCCACCTCTTCTCTCCTCAGG #rat_gr347612_libT4S1 22 1 sblock3034 CCCCACCTCTTCTCTCCTCAG #rat_gr347611_libT3S1 21 1 sblock3034 CCCACCTCTTCTCTCCTCA #rat_gr341845_libT1S1 19 1 sblock3034 CCCACCTCTTCTCTCCTC #rat_gr341844_libT1S2 18 1 sblock3034 CCCCACCTCTTCTCTCCTC #rat_gr347607_libT4S2 19 1 sblock3034 CCCCACCTCTTCTCTCCTC #rat_gr347607_libT5S1 19 1 sblock3034 TAGTACCATTAGAGCCAGAG #rat_gr784303_libT1S1 20 1 sblock3034 TAGTACCATTAGAGCCAGA #rat_gr784302_libT1S2 19 1 sblock3034 GTGAGGACTGGGGAGGTGGA #rat_gr644979_libT1S1 20 40 sblock3034 GTGAGGACTGGGGAGGTGGAG #rat_gr644980_libT1S1 21 17 sblock3034 GTGAGGACTGGGGAGGTGGAG #rat_gr644980_libT1S2 21 16 sblock3034 GTGAGGACTGGGGAGGTGGA #rat_gr644979_libT1S2 20 14 sblock3034 GTGAGGACTGGGGAGGTGG #rat_gr644978_libT1S1 19 11 sblock3034 GTGAGGACTGGGGAGGTG #rat_gr644975_libT1S1 18 6 sblock3034 GTGAGGACTGGGGAGGTGGAGG #rat_gr644981_libT1S2 22 4 sblock3034 GTGAGGACTGGGGAGGTGG #rat_gr644978_libT1S2 19 4 sblock3034 GTGAGGACTGGGGAGGTGGAGGGT #rat_gr644983_libT1S1 24 3 sblock3034 GTGAGGACTGGGGAGGTGGAGG #rat_gr644981_libT1S1 22 2 sblock3034 GTGAGGACTGGGGAGGTGGAGGG #rat_gr644982_libT1S1 23 1 sblock3034 TGAGGACTGGGGAGGTGGA #rat_gr945185_libT1S1 19 1 sblock3034 GTGAGGACTGGGGAGGTG #rat_gr644975_libT1S2 18 1 sblock3034 GCAGCCATGACTACCTGCCTTTGGTGAGGACTGGGGAGGTGGAGGGTAGTACCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAGGTACGACTGC mouseZ5p90 -----------------------GTGAGGACTGGGGAGGTGGAGGGTAGCATCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAG---------- ************************** * ******************************************************** sblock3034 >>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000037612 ENSRNOG00000001707 RGD1564491_predicted sblock3034 ............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... #ENSRNOT00000063288 ENSRNOG00000041535 sblock3034 ((((.......((((((.....((.(((((.(((((.((.((((((.(((.....((((((....)))))).....))))))))))))))))....))))).)).))))))...)))) 0.910 -48.40 # mouseZ5p90 .((((((..((((((((((((((.(((.....((((((....)))))).....)))))))......))))))))))..)))))). 0.992 -43.20 # #sblock3034 chromosome:11:82536253:82536370:-1 Same_strand|Boundary_non-coding|ENSRNOT00000063288|ENSRNOG00000041535 ## Same_strand|Boundary_coding|ENSRNOT00000037612|ENSRNOG00000001707 ## Same_strand|Intronic_coding|ENSRNOT00000037612|ENSRNOG00000001707 ## Same_strand|Exonic_non-coding|ENSRNOT00000063288|ENSRNOG00000041535 ## ENSRNOG00000041535|miRNA|| ## ENSRNOG00000001707|protein_coding|RGD1564491_predicted| #mouseZ5p90 chromosome:16:20604482:20604639:1 Same_strand|Boundary_coding|ENSMUST00000046188|ENSMUSG00000033821|protein_coding| ## Same_strand|Boundary_non-coding|ENSMUST00000117019|ENSMUSG00000080669|miRNA|mmu-mir-1224 [Source:miRBase;Acc:MI0004118] ## {MIR: mmu-mir-1224} ========== sblock3090 (miRBaseHomolog hsa-mir-802) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock3090: 0.001 randfold humanZ12p90_sblock3090: 0.001 randfold mouseZ11p90_sblock3090: 0.001 #forester humanZ12p90_sblock3090: 0.739726 forester mouseZ11p90_sblock3090: 0.953072 #identity: 91.40 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT2S2 21 562 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT2S2 19 397 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT2S1 19 386 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT2S1 21 363 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT2S2 23 275 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT2S2 22 270 sblock3090 TCAGTAACAAAGATTCATCC #rat_gr820238_libT2S2 20 224 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT2S1 23 202 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT2S1 22 183 sblock3090 TCAGTAACAAAGATTCATCC #rat_gr820238_libT2S1 20 144 sblock3090 TCAGTAACAAAGATTCAT #rat_gr820236_libT2S2 18 89 sblock3090 CAGTAACAAAGATTCATCCTTGT #rat_gr301485_libT2S2 23 61 sblock3090 CAGTAACAAAGATTCATCC #rat_gr301481_libT2S2 19 53 sblock3090 TCAGTAACAAAGATTCAT #rat_gr820236_libT2S1 18 49 sblock3090 CAGTAACAAAGATTCATCCTTGT #rat_gr301485_libT2S1 23 45 sblock3090 CAGTAACAAAGATTCATCCT #rat_gr301482_libT2S2 20 43 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT2S2 22 39 sblock3090 CAGTAACAAAGATTCATCCT #rat_gr301482_libT2S1 20 35 sblock3090 CAGTAACAAAGATTCATCC #rat_gr301481_libT2S1 19 32 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT2S1 22 28 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT5S1 21 27 sblock3090 TCAGTAACAAAGATTCATCC #rat_gr820238_libT5S2 20 18 sblock3090 CAGTAACAAAGATTCATC #rat_gr301480_libT2S1 18 17 sblock3090 CAGTAACAAAGATTCATCCTT #rat_gr301483_libT2S2 21 17 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT5S2 21 16 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT5S2 19 13 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT3S2 21 13 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT5S2 23 13 sblock3090 CAGTAACAAAGATTCATC #rat_gr301480_libT2S2 18 13 sblock3090 CAGTAACAAAGATTCATCCTT #rat_gr301483_libT2S1 21 13 sblock3090 CAGTAACAAAGATTCATCCTTGTGTC #rat_gr301487_libT2S1 26 11 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT5S1 19 10 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT5S2 22 10 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT5S1 22 9 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT5S1 23 9 sblock3090 CAGTAACAAAGATTCATCCTTGTGTC #rat_gr301487_libT2S2 26 9 sblock3090 TCAGTAACAAAGATTCATCC #rat_gr820238_libT5S1 20 8 sblock3090 GTCAGTAACAAAGATTCATCCT #rat_gr634251_libT2S2 22 6 sblock3090 TCAGTAACAAAGATTCATCC #rat_gr820238_libT3S2 20 6 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT3S1 21 6 sblock3090 CAGTAACAAAGATTCATCCTTGT #rat_gr301485_libT5S2 23 5 sblock3090 CAGTAACAAAGATTCATCC #rat_gr301481_libT5S2 19 4 sblock3090 GTCAGTAACAAAGATTCA #rat_gr634248_libT2S1 18 3 sblock3090 GTCAGTAACAAAGATTCATCCT #rat_gr634251_libT5S2 22 3 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT3S2 19 3 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT3S2 22 3 sblock3090 CAGTAACAAAGATTCATC #rat_gr301480_libT5S2 18 3 sblock3090 CAGTAACAAAGATTCATCCT #rat_gr301482_libT4S2 20 3 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT4S2 22 3 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT5S2 22 3 sblock3090 GTCAGTAACAAAGATTCATCC #rat_gr634250_libT2S1 21 2 sblock3090 GTCAGTAACAAAGATTCATCCT #rat_gr634251_libT5S1 22 2 sblock3090 TCAGTAACAAAGATTCAT #rat_gr820236_libT4S2 18 2 sblock3090 TCAGTAACAAAGATTCAT #rat_gr820236_libT5S2 18 2 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT1S1 19 2 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT4S2 19 2 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT1S1 21 2 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT1S1 23 2 sblock3090 CAGTAACAAAGATTCATCC #rat_gr301481_libT5S1 19 2 sblock3090 CAGTAACAAAGATTCATCCTT #rat_gr301483_libT5S2 21 2 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT4S1 22 2 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT5S1 22 2 sblock3090 CAGTAACAAAGATTCATCCTTGT #rat_gr301485_libT5S1 23 2 sblock3090 CAGTAACAAAGATTCATCCTTGTG #rat_gr301486_libT2S2 24 2 sblock3090 GTCAGTAACAAAGATTCA #rat_gr634248_libT2S2 18 1 sblock3090 GTCAGTAACAAAGATTCAT #rat_gr634249_libT2S2 19 1 sblock3090 GTCAGTAACAAAGATTCATCCTT #rat_gr634252_libT2S2 23 1 sblock3090 GTCAGTAACAAAGATTCATCCTT #rat_gr634252_libT5S2 23 1 sblock3090 TCAGTAACAAAGATTCAT #rat_gr820236_libT5S1 18 1 sblock3090 TCAGTAACAAAGATTCATC #rat_gr820237_libT1S2 19 1 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT4S1 21 1 sblock3090 TCAGTAACAAAGATTCATCCT #rat_gr820239_libT4S2 21 1 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT1S1 22 1 sblock3090 TCAGTAACAAAGATTCATCCTT #rat_gr820240_libT4S2 22 1 sblock3090 TCAGTAACAAAGATTCATCCTTG #rat_gr820241_libT3S2 23 1 sblock3090 CAGTAACAAAGATTCATC #rat_gr301480_libT5S1 18 1 sblock3090 CAGTAACAAAGATTCATCCT #rat_gr301482_libT1S1 20 1 sblock3090 CAGTAACAAAGATTCATCCT #rat_gr301482_libT5S2 20 1 sblock3090 CAGTAACAAAGATTCATCCTTG #rat_gr301484_libT3S2 22 1 sblock3090 CAGTAACAAAGATTCATCCTTGT #rat_gr301485_libT1S2 23 1 sblock3090 CAGTAACAAAGATTCATCCTTGTG #rat_gr301486_libT2S1 24 1 sblock3090 CAGTAACAAAGATTCATCCTTGTG #rat_gr301486_libT5S2 24 1 sblock3090 CAGTAACAAAGATTCATCCTTGTGTC #rat_gr301487_libT5S1 26 1 sblock3090 CAGTAACAAAGATTCATCCTTGTGTC #rat_gr301487_libT5S2 26 1 sblock3090 AGTAACAAAGATTCATCCT #rat_gr194494_libT2S1 19 1 sblock3090 GTAACAAAGATTCATCCT #rat_gr627116_libT2S1 18 1 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT2S2 18 129 sblock3090 ACGGAGAGTCTTTGTCACT #rat_gr112807_libT2S2 19 110 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT2S1 18 87 sblock3090 ACGGAGAGTCTTTGTCACT #rat_gr112807_libT2S1 19 80 sblock3090 ACGGAGAGTCTTTGTCACTCAGT #rat_gr112811_libT2S2 23 80 sblock3090 ACGGAGAGTCTTTGTCACTC #rat_gr112808_libT2S2 20 61 sblock3090 ACGGAGAGTCTTTGTCACTCAGT #rat_gr112811_libT2S1 23 61 sblock3090 ACGGAGAGTCTTTGTCACTCAG #rat_gr112810_libT2S2 22 53 sblock3090 CGGAGAGTCTTTGTCACTCAGT #rat_gr397090_libT2S1 22 52 sblock3090 ACGGAGAGTCTTTGTCACTCAG #rat_gr112810_libT2S1 22 43 sblock3090 CGGAGAGTCTTTGTCACTCAGT #rat_gr397090_libT2S2 22 43 sblock3090 ACGGAGAGTCTTTGTCACTC #rat_gr112808_libT2S1 20 42 sblock3090 ACGGAGAGTCTTTGTCACTCA #rat_gr112809_libT2S2 21 40 sblock3090 ACGGAGAGTCTTTGTCACTCA #rat_gr112809_libT2S1 21 37 sblock3090 CGGAGAGTCTTTGTCACT #rat_gr397086_libT2S1 18 22 sblock3090 CGGAGAGTCTTTGTCACT #rat_gr397086_libT2S2 18 19 sblock3090 CGGAGAGTCTTTGTCACTC #rat_gr397087_libT2S2 19 16 sblock3090 CGGAGAGTCTTTGTCACTC #rat_gr397087_libT2S1 19 15 sblock3090 CGGAGAGTCTTTGTCACTCA #rat_gr397088_libT2S2 20 15 sblock3090 CGGAGAGTCTTTGTCACTCA #rat_gr397088_libT2S1 20 9 sblock3090 CGGAGAGTCTTTGTCACTCAG #rat_gr397089_libT2S1 21 6 sblock3090 ACGGAGAGTCTTTGTCACTCAG #rat_gr112810_libT5S2 22 5 sblock3090 CGGAGAGTCTTTGTCACTCAG #rat_gr397089_libT2S2 21 5 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT5S1 18 3 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT5S2 18 3 sblock3090 CGGAGAGTCTTTGTCACTCAGTGT #rat_gr397091_libT2S2 24 3 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT4S1 18 2 sblock3090 ACGGAGAGTCTTTGTCACT #rat_gr112807_libT1S2 19 2 sblock3090 ACGGAGAGTCTTTGTCACT #rat_gr112807_libT5S1 19 2 sblock3090 ACGGAGAGTCTTTGTCACTCAG #rat_gr112810_libT5S1 22 2 sblock3090 ACGGAGAGTCTTTGTCACTCAGTG #rat_gr112812_libT2S1 24 2 sblock3090 ACGGAGAGTCTTTGTCACTCAGTG #rat_gr112812_libT2S2 24 2 sblock3090 ACGGAGAGTCTTTGTCACTCAGTGT #rat_gr112813_libT2S2 25 2 sblock3090 CGGAGAGTCTTTGTCACTCAGTGT #rat_gr397091_libT5S1 24 2 sblock3090 ACGGAGAGTCTTTGTCAC #rat_gr112806_libT4S2 18 1 sblock3090 ACGGAGAGTCTTTGTCACTC #rat_gr112808_libT3S1 20 1 sblock3090 ACGGAGAGTCTTTGTCACTC #rat_gr112808_libT5S1 20 1 sblock3090 ACGGAGAGTCTTTGTCACTC #rat_gr112808_libT5S2 20 1 sblock3090 ACGGAGAGTCTTTGTCACTCA #rat_gr112809_libT5S1 21 1 sblock3090 ACGGAGAGTCTTTGTCACTCA #rat_gr112809_libT5S2 21 1 sblock3090 ACGGAGAGTCTTTGTCACTCAG #rat_gr112810_libT1S2 22 1 sblock3090 ACGGAGAGTCTTTGTCACTCAGT #rat_gr112811_libT4S1 23 1 sblock3090 ACGGAGAGTCTTTGTCACTCAGT #rat_gr112811_libT4S2 23 1 sblock3090 ACGGAGAGTCTTTGTCACTCAGT #rat_gr112811_libT5S2 23 1 sblock3090 ACGGAGAGTCTTTGTCACTCAGTG #rat_gr112812_libT5S2 24 1 sblock3090 CGGAGAGTCTTTGTCACT #rat_gr397086_libT5S2 18 1 sblock3090 CGGAGAGTCTTTGTCACTCA #rat_gr397088_libT3S1 20 1 sblock3090 CGGAGAGTCTTTGTCACTCA #rat_gr397088_libT5S1 20 1 sblock3090 CGGAGAGTCTTTGTCACTCA #rat_gr397088_libT5S2 20 1 sblock3090 CGGAGAGTCTTTGTCACTCAG #rat_gr397089_libT4S2 21 1 sblock3090 CGGAGAGTCTTTGTCACTCAGT #rat_gr397090_libT5S2 22 1 sblock3090 --------------CGTGGCCAC----AGTCCTATTATTTGCAGTCAGTAACAAAGATTCATCCTTGTGTCGATCATACAGCACGGAGAGTCTTTGTCACTCAGTGTAATTAATAGCCTTCACCTCGC--------------- humanZ12p90 TTCCCAGCCTGACTCTTGGTCACCACTCGTTCTGTTATTTGCAGTCAGTAACAAAGATTCATCCTTGTGTCCATCATGCAACAAGGAGAATCTTTGTCACTTAGTGTAATTAATAG-CTGGACCTTGCAAAGGAAGGTGGGAG mouseZ11p90 -------------------------------CTATTATTTGCAATCAGTAACAAAGATTCATCCTTGTGTCAATCATACAACACGGAGAGTCTTTGTCACTCAGTGTAATTAATAG--------------------------- ** ********* *************************** ***** ** ** ***** *********** ************** sblock3090 ..... ......... .>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.... ..... #ENSRNOT00000062129 ENSRNOG00000040376 sblock3090 ((.((.... ((..((((((.(((((...(((.((((((((((.(((((((((.....))))))...))))))))))))).)))...))))).)))))).))...)).)). 0.990 -31.50 # humanZ12p90 .(((((.(((..((...((((..........((((((.(((((...(((.((((((((((.(((((((((.......))).)))))))))))))))).)))...))))).)))))) ...))))......))..)))))))). 0.803 -50.12 # mouseZ11p90 ((((((.(((((...(((.((((((((((.(((((((((.....))))))...))))))))))))).)))...))))).)))))) 1.000 -29.70 # #sblock3090 chromosome:11:33538456:33538565:1 Same_strand|Exonic_non-coding|ENSRNOT00000062129|ENSRNOG00000040376 ## ENSRNOG00000040376|miRNA|| #humanZ12p90 chromosome:21:36014855:36014996:1 Same_strand|Boundary_non-coding|ENST00000390235|ENSG00000211590|miRNA|hsa-mir-802 [Source:miRBase;Acc:MI0003906] ## {MIR: hsa-mir-802} #mouseZ11p90 chromosome:16:93369969:93370053:1 Same_strand|Exonic_non-coding|ENSMUST00000103258|ENSMUSG00000076457|miRNA|mmu-mir-802 [Source:miRBase;Acc:MI0004249] ## {MIR: mmu-mir-802} ========== sblock4322 (miRBaseHomolog hsa-mir-216b) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH] ========== #randfold sblock4322: 0.001 randfold humanZ36p91_sblock4322: 0.001 randfold mouseZ56p91_sblock4322: 0.001 #forester humanZ36p91_sblock4322: 0.923378 forester mouseZ56p91_sblock4322: 0.830451 #identity: 91.97 sblock4322 AAATCTCTGCAGGCAAATGTGA #rat_gr21620_libT3S2 22 36 sblock4322 AAATCTCTGCAGGCAAATGT #rat_gr21618_libT3S2 20 30 sblock4322 AAATCTCTGCAGGCAAATGTG #rat_gr21619_libT3S2 21 19 sblock4322 AAATCTCTGCAGGCAAATG #rat_gr21617_libT3S2 19 16 sblock4322 AAATCTCTGCAGGCAAATGTGA #rat_gr21620_libT3S1 22 14 sblock4322 AAATCTCTGCAGGCAAATGTGA #rat_gr21620_libT1S1 22 12 sblock4322 AAATCTCTGCAGGCAAAT #rat_gr21616_libT3S2 18 10 sblock4322 AAATCTCTGCAGGCAAATGTG #rat_gr21619_libT3S1 21 10 sblock4322 AAATCTCTGCAGGCAAATGT #rat_gr21618_libT1S1 20 9 sblock4322 AAATCTCTGCAGGCAAATG #rat_gr21617_libT3S1 19 3 sblock4322 AAATCTCTGCAGGCAAATGT #rat_gr21618_libT3S1 20 3 sblock4322 AAATCTCTGCAGGCAAATGTG #rat_gr21619_libT1S1 21 3 sblock4322 AAATCTCTGCAGGCAAAT #rat_gr21616_libT1S1 18 2 sblock4322 AAATCTCTGCAGGCAAAT #rat_gr21616_libT3S1 18 2 sblock4322 AAATCTCTGCAGGCAAATG #rat_gr21617_libT1S1 19 2 sblock4322 AAATCTCTGCAGGCAAATGT #rat_gr21618_libT1S2 20 1 sblock4322 AAATCTCTGCAGGCAAATGTG #rat_gr21619_libT1S2 21 1 sblock4322 AAATCTCTGCAGGCAAATGTGA #rat_gr21620_libT1S2 22 1 sblock4322 ACACACTTACTTGTAGAGATTC #rat_gr72570_libT3S2 22 3 sblock4322 CACACTTACTTGTAGAGATTC #rat_gr277480_libT3S2 21 2 sblock4322 ACACTTACTTGTAGAGATTC #rat_gr75909_libT3S2 20 2 sblock4322 ACACACTTACTTGTAGAG #rat_gr72567_libT3S1 18 1 sblock4322 ACACACTTACTTGTAGAGA #rat_gr72568_libT3S1 19 1 sblock4322 ACACACTTACTTGTAGAGAT #rat_gr72569_libT3S2 20 1 sblock4322 ACACACTTACTTGTAGAGATTC #rat_gr72570_libT3S1 22 1 sblock4322 ACACTTACTTGTAGAGATTCT #rat_gr75910_libT1S2 21 1 sblock4322 ACACTTACTTGTAGAGATTCTTC #rat_gr75911_libT1S2 23 1 sblock4322 CACTTACTTGTAGAGATTC #rat_gr285042_libT3S1 19 1 sblock4322 --------TGCACGTTGGCAGACTGGGAAATCTCTGCAGGCAAATGTGATGTCACTGAAGAAATCACACACTTACTTGTAGAGATTCTTCAGTCTGACAACATCAAGCAT humanZ36p91 AGTACAACTTCAAAGTGGCAGACTGGAAAATCTCTGCAGGCAAATGTGATGTCACTGAGGAAATCACACACTTACCCGTAGAGATTCTACAGTCTGACATCTTCAAG--- mouseZ56p91 --------TGCACATTGGCAGACTGGGAAATCTCTGCAGGCAAATGTGATGTCACTGAAGAAACCACACACTTACCTGTAGAGATTCTTCAGTCTGACAACATCAAGCA- * ** *********** ******************************* **** *********** *********** ********** * ***** sblock4322 ..... ......>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... #ENSRNOT00000054490 ENSRNOG00000036371 sblock4322 .....((((.((((((((..((((((((((((....((((((.((......)).))))))......))))))))))))..)))))))).))))......... 1.000 -42.20 # humanZ36p91 .......(((.((..((.(((((((...(((((((((.((....((((((.((......)).))))))......)).)))))))))...))))))).))..)).))) 0.983 -35.40 # mouseZ56p91 .((....((.((((((((..((((((((((((.((.((((...((......)).....)))).)).))))))))))))..))))))))....))....)). 0.999 -39.50 # #sblock4322 chromosome:14:109655043:109655144:1 Same_strand|Exonic_non-coding|ENSRNOT00000054490|ENSRNOG00000036371 ## ENSRNOG00000036371|miRNA|| #humanZ36p91 chromosome:2:56081345:56081451:-1 Same_strand|Boundary_non-coding|ENST00000390186|ENSG00000211520|miRNA|hsa-mir-216b [Source:miRBase;Acc:MI0005569] ## {MIR: hsa-mir-216b} #mouseZ56p91 chromosome:11:28646185:28646285:1 Same_strand|Boundary_non-coding|ENSMUST00000102363|ENSMUSG00000076318|miRNA|mmu-mir-216b [Source:miRBase;Acc:MI0004126] ## {MIR: mmu-mir-216b} ========== sblock502 (miRBaseHomolog mmu-mir-294) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock502: 0.001 randfold mouseZ40p92_sblock502: 0.003 #forester mouseZ40p92_sblock502: 0.916664 #identity: 95.16 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT2S1 22 3 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT3S2 22 3 sblock502 AAAGTGCTTCCATTTTGTGT #rat_gr20017_libT2S2 20 3 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT1S2 22 2 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT2S2 22 2 sblock502 AAAGTGCTTCCATTTTGTGTG #rat_gr20018_libT3S1 21 2 sblock502 AAGTGCTTCCATTTTGTGTGTT #rat_gr56280_libT5S1 22 1 sblock502 AAGTGCTTCCATTTTGTGTGT #rat_gr56279_libT5S2 21 1 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT3S1 22 1 sblock502 AAAGTGCTTCCATTTTGTGTGT #rat_gr20019_libT5S2 22 1 sblock502 AAAGTGCTTCCATTTTGTGTG #rat_gr20018_libT1S2 21 1 sblock502 AAAGTGCTTCCATTTTGTGTG #rat_gr20018_libT2S1 21 1 sblock502 AAAGTGCTTCCATTTTGTGTG #rat_gr20018_libT3S2 21 1 sblock502 AAAGTGCTTCCATTTTGTGTG #rat_gr20018_libT4S2 21 1 sblock502 AAAGTGCTTCCATTTTGTGT #rat_gr20017_libT1S2 20 1 sblock502 AAAGTGCTTCCATTTTGTG #rat_gr20016_libT2S1 19 1 sblock502 AAAGTGCTTCCATTTTGT #rat_gr20015_libT2S1 18 1 sblock502 AAAGTGCTTCCATTTTGT #rat_gr20015_libT2S2 18 1 sblock502 AAAGTGCTTCCATTTTGT #rat_gr20015_libT4S2 18 1 sblock502 GCTCAAAATGGAGGCCCTAT #rat_gr567729_libT5S2 20 1 sblock502 GCTCAAAATGGAGGCCCTA #rat_gr567728_libT2S2 19 1 sblock502 GAGGATCTTGGAAAAACCACCATAGCCATGCTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTAGAAAGTGCTTCCATTTTGTGTGTTGCTGTGTGGAAGAAGGCATCCGGGACTTCA mouseZ40p92 --------------------------CATACTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTGGAAAGTGCTTCCCTTTTGTGTGTT------------------------------ *** ********************************* ************ *********** sblock502 .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................... #ENSRNOT00000062163 ENSRNOG00000040410 sblock502 ((((.(((((((....(((.((((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))).)))).))))))))).........))))))))))). 1.000 -47.62 # mouseZ40p92 .((((.(((((.((((((.((.(((..(((....)))))).)).)))))).))))).)))). 1.000 -20.20 # #sblock502 chromosome:1:64272941:64273058:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062163|ENSRNOG00000040410 ## ENSRNOG00000040410|miRNA|| #mouseZ40p92 chromosome:7:3220607:3220764:1 Same_strand|Boundary_non-coding|ENSMUST00000104710|ENSMUSG00000077903|miRNA|mmu-mir-294 [Source:miRBase;Acc:MI0000392] ## {MIR: mmu-mir-294} ========== sblock503 (miRBaseHomolog mmu-mir-293) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock503: 0.001 randfold mouseZ44p92_sblock503: 0.001 #forester mouseZ44p92_sblock503: 0.774437 #identity: 88.37 sblock503 AGTGCCGCAAAGTTTGCAGTGT #rat_gr199835_libT1S2 22 5 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT1S2 19 5 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT2S1 19 4 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT3S1 19 4 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT5S2 19 4 sblock503 AGTGCCGCAAAGTTTGCAGTGT #rat_gr199835_libT2S1 22 3 sblock503 AGTGCCGCAAAGTTTGCA #rat_gr199832_libT3S1 18 3 sblock503 AGTGCCGCAAAGTTTGCAGTGT #rat_gr199835_libT3S1 22 2 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT1S1 21 2 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT2S1 21 2 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT2S2 21 2 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT2S2 19 2 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT5S1 19 2 sblock503 AGTGCCGCAAAGTTTGCA #rat_gr199832_libT5S2 18 2 sblock503 AGTGCCGCAAAGTTTGCAGTGT #rat_gr199835_libT5S1 22 1 sblock503 AGTGCCGCAAAGTTTGCAGTGT #rat_gr199835_libT5S2 22 1 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT1S2 21 1 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT3S1 21 1 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT3S2 21 1 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT4S2 21 1 sblock503 AGTGCCGCAAAGTTTGCAGTG #rat_gr199834_libT5S1 21 1 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT3S2 19 1 sblock503 AGTGCCGCAAAGTTTGCAG #rat_gr199833_libT4S2 19 1 sblock503 AGTGCCGCAAAGTTTGCA #rat_gr199832_libT1S2 18 1 sblock503 AAGTGCCGCAAAGTTTGC #rat_gr56203_libT5S1 18 1 sblock503 ACTCAAACTGTGTGACACTT #rat_gr116301_libT2S2 20 6 sblock503 ACTCAAACTGTGTGACAC #rat_gr116299_libT5S2 18 6 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT2S2 21 5 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT5S2 21 3 sblock503 ACTCAAACTGTGTGACACTT #rat_gr116301_libT1S2 20 3 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT1S2 21 2 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT3S2 21 2 sblock503 ACTCAAACTGTGTGACACTT #rat_gr116301_libT5S2 20 2 sblock503 ACTCAAACTGTGTGACACT #rat_gr116300_libT2S2 19 2 sblock503 ACTCAAACTGTGTGACACT #rat_gr116300_libT5S2 19 2 sblock503 ACTCAAACTGTGTGACAC #rat_gr116299_libT1S2 18 2 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT1S1 21 1 sblock503 ACTCAAACTGTGTGACACTTT #rat_gr116302_libT4S2 21 1 sblock503 ACTCAAACTGTGTGACACTT #rat_gr116301_libT5S1 20 1 sblock503 ACTCAAACTGTGTGACACT #rat_gr116300_libT2S1 19 1 sblock503 ACTCAAACTGTGTGACACT #rat_gr116300_libT5S1 19 1 sblock503 ACTCAAACTGTGTGACAC #rat_gr116299_libT2S2 18 1 sblock503 CTTATTTGCAAGTGTTTCCACCTGTGATACTCAAACTGTGTGACACTTTGTTTCTTTTGGAAGAAGTGCCGCAAAGTTTGCAGTGTTACCGATGGAGAAAACTGCAGTTAGG mouseZ44p92 ---------------TTCAATCTGTGGTACTCAAACTGTGTGACATTTTGTT--CTTTGTAAGAAGTGCCGCAGAGTTTGTAGTGTTGCCGATTGAG-AAACTG-------- *** * ***** ****************** ****** **** ************* ****** ****** ***** *** ****** sblock503 ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................... #ENSRNOT00000062153 ENSRNOG00000040400 sblock503 ((((.(((((....((((((...((((((((((((((.((((.((((((.((((....)))))))))).)))).)))))).))))))))...))))))....))))).)))) 1.000 -42.30 # mouseZ44p92 (((((((.((..((((((((((.((((.((((((... ........)))))).)))).)))))).))))..)).))))))) ...... 1.000 -31.70 # #sblock503 chromosome:1:64273309:64273420:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062153|ENSRNOG00000040400 ## ENSRNOG00000040400|miRNA|| #mouseZ44p92 chromosome:7:3220344:3220429:1 Same_strand|Boundary_non-coding|ENSMUST00000104841|ENSMUSG00000078035|miRNA|mmu-mir-293 [Source:miRBase;Acc:MI0000391] ## {MIR: mmu-mir-293} ========== sblock899 (miRBaseHomolog hsa-mir-202) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock899: 0.001 randfold humanZ10p97_sblock899: 0.001 randfold mouseZ12p97_sblock899: 0.001 #forester humanZ10p97_sblock899: 0.842522 forester mouseZ12p97_sblock899: 1 #identity: 83.79 sblock899 AGAGGTATAGCGCATGGGAAA #rat_gr144885_libT5S1 21 1 sblock899 AGAGGTATAGCGCATGGGAA #rat_gr144884_libT5S1 20 1 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT5S1 19 39 sblock899 TTCCTATGCATATACTTCTT #rat_gr1121169_libT5S1 20 15 sblock899 TTCCTATGCATATACTTC #rat_gr1121167_libT5S1 18 14 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT5S1 21 11 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT1S1 19 7 sblock899 TTCCTATGCATATACTTCTTTG #rat_gr1121171_libT5S1 22 6 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT1S1 21 6 sblock899 TTCCTATGCATATACTTCTT #rat_gr1121169_libT1S1 20 5 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT3S1 21 3 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT1S2 19 3 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT4S2 19 3 sblock899 TTCCTATGCATATACTTC #rat_gr1121167_libT1S2 18 3 sblock899 TTCCTATGCATATACTTCTTTGT #rat_gr1121172_libT5S1 23 2 sblock899 TCCTATGCATATACTTCTTT #rat_gr870572_libT5S1 20 2 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT1S2 21 2 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT3S2 21 2 sblock899 TTTCCTATGCATATACTTCTT #rat_gr1162554_libT1S1 21 2 sblock899 TCCTATGCATATACTTCT #rat_gr870571_libT5S1 18 2 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT5S2 19 2 sblock899 TTTCCTATGCATATACTT #rat_gr1162551_libT5S1 18 2 sblock899 TTCCTATGCATATACTTCTTTG #rat_gr1121171_libT1S1 22 1 sblock899 TTCCTATGCATATACTTCTTT #rat_gr1121170_libT2S2 21 1 sblock899 TTCCTATGCATATACTTCTT #rat_gr1121169_libT1S2 20 1 sblock899 TTCCTATGCATATACTTCTT #rat_gr1121169_libT3S2 20 1 sblock899 TCCTATGCATATACTTCT #rat_gr870571_libT3S2 18 1 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT2S2 19 1 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT3S1 19 1 sblock899 TTCCTATGCATATACTTCT #rat_gr1121168_libT3S2 19 1 sblock899 TTTCCTATGCATATACTTCT #rat_gr1162553_libT5S1 20 1 sblock899 TTCCTATGCATATACTTC #rat_gr1121167_libT1S1 18 1 sblock899 TTCCTATGCATATACTTC #rat_gr1121167_libT5S2 18 1 sblock899 TTTCCTATGCATATACTTC #rat_gr1162552_libT2S1 19 1 sblock899 TTTCCTATGCATATACTTC #rat_gr1162552_libT5S1 19 1 sblock899 -------ATGGCCTGCACATTC-----TCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAAATGGAGCAGTGAGATCTTCCCCACCCA---------------- humanZ10p97 GTGCTGAAGAGCCGGCCCGCCTCAGAGCCGCCCGCCGTTCCTTTTTCCTATGCATATACTTCTTTGAGGATCTGGCCTAAAGAGGTATAGGGCATGGGAAAACGGGGCGGTCGGGTCCTCCCCAGCGGCACCTGCACCAGTGC- mouseZ12p97 ------------------------------CTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTCCCCACCCAAACAAAGTCATTAGCA * ** ****************************** ******** ************** ********* * ** ** ** * ** ****** * sblock899 >>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000054883 ENSRNOG00000036648 LOC681930 sblock899 ..... ...>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... #ENSRNOT00000053676 ENSRNOG00000035553 sblock899 .(((.........(( ((....((((((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).))))))))))))..........))) 0.920 -46.31 # humanZ10p97 ((((((....((.((.((((....(((..((((((((..((.(((((((((((.(((((((((((.(((......))))))))))))))..))))))))))).))..))).))))).)))....))))..)).))..)))))) 0.974 -72.10 # mouseZ12p97 ((.((((((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))))).)).............................. 0.807 -45.70 # #sblock899 chromosome:1:199758111:199758226:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053676|ENSRNOG00000035553 ## Same_strand|Boundary_non-coding|ENSRNOT00000054883|ENSRNOG00000036648 ## ENSRNOG00000036648|protein_coding|LOC681930| ## ENSRNOG00000035553|miRNA|| #humanZ10p97 chromosome:10:134910990:134911132:-1 Same_strand|Boundary_non-coding|ENST00000362219|ENSG00000199089|miRNA|hsa-mir-202 [Source:miRBase;Acc:MI0003130] ## {Repeats: trf 0 class=trf} ## {MIR: hsa-mir-202} #mouseZ12p97 chromosome:7:147143552:147143665:-1 Same_strand|Boundary_non-coding|ENSMUST00000083568|ENSMUSG00000065502|miRNA|mmu-mir-202 [Source:miRBase;Acc:MI0000245] ## {MIR: mmu-mir-202} ========== sblock9304 (miRBaseHomolog hsa-mir-876) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock9304: 0.001 randfold humanZ21p97_sblock9304: 0.001 randfold mouseZ33p97_sblock9304: 0.001 #forester humanZ21p97_sblock9304: 0.736235 forester mouseZ33p97_sblock9304: 0.912386 #identity: 91.87 sblock9304 GTGGTTTGCAAAGTAATTC #rat_gr652911_libT1S1 19 1 sblock9304 TGGATTTCTCTGTGAATCACCA #rat_gr1007098_libT1S1 22 5 sblock9304 TGGATTTCTCTGTGAATCACCA #rat_gr1007098_libT1S2 22 5 sblock9304 TGGATTTCTCTGTGAATCACC #rat_gr1007097_libT1S2 21 2 sblock9304 ATTTCTCTGTGAATCACCATATC #rat_gr248276_libT1S1 23 1 sblock9304 TGGATTTCTCTGTGAATCACCAT #rat_gr1007099_libT1S1 23 1 sblock9304 TGGATTTCTCTGTGAATCACC #rat_gr1007097_libT1S1 21 1 sblock9304 TGGATTTCTCTGTGAATC #rat_gr1007096_libT1S1 18 1 sblock9304 AGCATTACATAAACTGTCAAGTGCTGTGGATTTCTCTGTGAATCACCATATCAAATCTAATGTGGTGGTGGTTTGCAAAGTAATTCATAGTGCTTCATAGATGCTC humanZ21p97 --------------------------TGGATTTCTTTGTGAATCACCATATCTAAGCTAATGTGGTGGTGGTTTACAAAGTAATTCA------------------- mouseZ33p97 -------------CTGTCACGTGCTATGGATTTCTCTGTGAATCACTATATCAAATCTAGTGTGGTAGTGGTTTACAAAGTAATTCATAGTGCTTCACAG------ ********* ********** ***** ** *** ****** ******* ************ sblock9304 .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. #ENSRNOT00000063073 ENSRNOG00000041320 sblock9304 (((((........((((.(((..(((((((((.((.((..(((((((((..((.......))..)))))))))..)).)).)))))))))..))).))))))))). 0.970 -40.00 # humanZ21p97 .(((((.((((((((((((((((......((....)).)))))))))))))))).))))). 1.000 -25.80 # mouseZ33p97 ((((...((((((((((((.((.(((((((((((((..((.......))..))))))))))))).)).))))))))))))...)))) 1.000 -33.20 # #sblock9304 chromosome:5:53434868:53434973:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063073|ENSRNOG00000041320 ## ENSRNOG00000041320|miRNA|| #humanZ21p97 chromosome:9:28853595:28853740:-1 Same_strand|Boundary_non-coding|ENST00000401147|ENSG00000215966|miRNA|hsa-mir-876 [Source:miRBase;Acc:MI0005542] ## {MIR: hsa-mir-876} #mouseZ33p97 chromosome:4:36592403:36592489:-1 Same_strand|Boundary_non-coding|ENSMUST00000098151|ENSMUSG00000045083|protein_coding|leucine rich repeat and Ig domain containing 2 Gene [Source:MGI (curated);Acc:Lingo2-001] ## Same_strand|Intronic_non-coding|ENSMUST00000108122|ENSMUSG00000045083|protein_coding|leucine rich repeat and Ig domain containing 2 Gene [Source:MGI (curated);Acc:Lingo2-001] ## {MIR: mmu-mir-876} ========== sblock10510 (miRBaseHomolog hsa-mir-544) [miRBaseHomolog_rep_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10510: 0.001 randfold humanZ22p83_sblock10510: 0.002 randfold mouseZ25p83_sblock10510: 0.001 #forester humanZ22p83_sblock10510: 0.932358 forester mouseZ25p83_sblock10510: 0.941918 #identity: 95.26 sblock10510 TCTTGTTAAAAAGCAGATTCT #rat_gr914503_libT1S1 21 1 sblock10510 CTTGTTAAAAAGCAGATTC #rat_gr467152_libT1S2 19 1 sblock10510 CTTGTTAAAAAGCAGATTCT #rat_gr467153_libT1S1 20 1 sblock10510 CTTGTTAAAAAGCAGATTCT #rat_gr467153_libT1S2 20 1 sblock10510 ATTCTGCATTTTTAGCAAGC #rat_gr242901_libT1S1 20 53 sblock10510 ATTCTGCATTTTTAGCAAGC #rat_gr242901_libT1S2 20 53 sblock10510 ATTCTGCATTTTTAGCAA #rat_gr242899_libT1S1 18 26 sblock10510 ATTCTGCATTTTTAGCAAGCTC #rat_gr242903_libT1S1 22 18 sblock10510 ATTCTGCATTTTTAGCAA #rat_gr242899_libT1S2 18 14 sblock10510 ATTCTGCATTTTTAGCAAG #rat_gr242900_libT1S1 19 8 sblock10510 ATTCTGCATTTTTAGCAAGCT #rat_gr242902_libT1S1 21 8 sblock10510 ATTCTGCATTTTTAGCAAGCT #rat_gr242902_libT1S2 21 8 sblock10510 ATTCTGCATTTTTAGCAAGCTC #rat_gr242903_libT1S2 22 6 sblock10510 ATTCTGCATTTTTAGCAAG #rat_gr242900_libT1S2 19 5 sblock10510 AGATTCTGCATTTTTAGCA #rat_gr148437_libT1S1 19 3 sblock10510 AGATTCTGCATTTTTAGCA #rat_gr148437_libT1S2 19 3 sblock10510 AGATTCTGCATTTTTAGCAAGCTC #rat_gr148440_libT1S2 24 3 sblock10510 TCTGCATTTTTAGCAAGC #rat_gr906092_libT1S2 18 3 sblock10510 AGATTCTGCATTTTTAGCAAGC #rat_gr148439_libT1S1 22 2 sblock10510 AGATTCTGCATTTTTAGC #rat_gr148436_libT1S2 18 1 sblock10510 AGATTCTGCATTTTTAGCAA #rat_gr148438_libT1S1 20 1 sblock10510 GATTCTGCATTTTTAGCAA #rat_gr524412_libT1S2 19 1 sblock10510 GATTCTGCATTTTTAGCAAG #rat_gr524413_libT1S2 20 1 sblock10510 GATTCTGCATTTTTAGCAAGCTC #rat_gr524414_libT1S2 23 1 sblock10510 ATTCTGCATTTTTAGCAAGCTC #rat_gr242903_libT4S1 22 1 sblock10510 ATTCTGCATTTTTAGCAAGCTCTC #rat_gr242904_libT1S1 24 1 sblock10510 ATTCTGCATTTTTAGCAAGCTCTC #rat_gr242904_libT1S2 24 1 sblock10510 CGGCTAAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTGAGGGACCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCTGCCG humanZ22p83 --------ATTTTCATCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCTCAAGTGATGCTAAT------- mouseZ25p83 ------------------------GATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTC---------------------- ******************* ******* **** ************************ ** sblock10510 .............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ #ENSRNOT00000054595 ENSRNOG00000036487 sblock10510 ((((..((.((((((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))..)))))))))) 0.980 -37.72 # humanZ22p83 .....((((((...((((.((((((((((((((((.(((..((....))...))).))))).))))))))))).))))..))))))..... 1.000 -32.60 # mouseZ25p83 ((.((((((((((((((((((((.............))))))))).))))))))))).)) 1.000 -23.82 # #sblock10510 chromosome:6:134410238:134410343:1 Same_strand|Exonic_non-coding|ENSRNOT00000054595|ENSRNOG00000036487 ## ENSRNOG00000036487|miRNA|| ## {Repeats: MER5A1 100 121 -1 class=DNA/MER1_type,MER5A1 61 87 -1 class=DNA/MER1_type,MER5A1 -1 188 -1 class=DNA} #humanZ22p83 chromosome:14:100584748:100584838:1 Same_strand|Exonic_non-coding|ENST00000384855|ENSG00000207587|miRNA|hsa-mir-544 [Source:miRBase;Acc:MI0003515] ## {Repeats: MER5A1 -1 class=DNA/MER1_type} ## {MIR: hsa-mir-544} #mouseZ25p83 chromosome:12:110967499:110967644:1 Same_strand|Boundary_non-coding|ENSMUST00000103813|ENSMUSG00000077001|miRNA|mmu-mir-544 [Source:miRBase;Acc:MI0005555] ## {Repeats: MER5A1 -1 class=DNA/MER1_type} ## {MIR: mmu-mir-544} ========== block630476 (miRBaseHomolog mmu-mir-466b-8) [miRBaseHomolog_randfoldOK] ========== #randfold block630476: 0.001 randfold human324p24_block630476: 0.001 randfold mouseZ24p24_block630476: 0.001 #forester human324p24_block630476: 0.549263 forester mouseZ24p24_block630476: 0.568378 #identity: 66.19 block630476 ATGTGTGTGTATGTTCTTTTGT #rat_gr238294_libT3S1 22 1 block630476 --TGTGCA---TATGACTATATGTGTGTGTATGTTCTTTTGTGTATATGAATATACATATACATAAACACATACACACA-CAAACAAGAACACTCACAC-------------- human324p24 --TAAAAAAAGTACAAAATTGTGTGTGTGTATGTTCGTTTGTAAATATATGTACACACATACACATATAGATATACACACCACATAGACACACACTCATTCACTTTATTTTTA mouseZ24p24 TGTGTGTA---TGTGTTGATGTGTGTGTACATGTACATGTGTGAATATG-ATATACATATACATACACGCACACATAAGACACATATGAGCACACAGAC-------------- * * * * ******* **** * * *** **** ** *** ***** * * * * * * ** * * *** * * block630476 +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ +++++ #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 block630476 ((((.. ..........(((((((((((((...((((((((((((......)))))))))))).))))))))))) ))............)))). 0.870 -33.15 # human324p24 .....(((((........((((((((.(((((..((.((((..(((((((..........)))))))....)))).)).))))).))))))))......)))))....... 0.998 -27.94 # mouseZ24p24 (((((((( ((((((.((((((((((..(((((.(((((((...... .))))))).)))))..))))))))))..)))))))....)))))))... 0.996 -39.50 # #block630476 chromosome:17:79266511:79266603:-1 Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] #human324p24 chromosome:2:217418906:217419016:1 intergenic ## {Repeats: dust 0 class=dust} #mouseZ24p24 chromosome:2:10422736:10422830:1 Same_strand|Boundary_non-coding|ENSMUST00000114864|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## Same_strand|Intronic_coding|ENSMUST00000041105|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: dust 0 class=dust,(TATATG)n 1 class=Simple_repeat,trf 0 class=trf} ## {MIR: mmu-mir-466b-8} ========== block630542 (Antisense miRBaseHomolog mmu-mir-466b-5-as) [miRBaseHomolog_lenNOK_cloningOK_randfoldOK] ========== #randfold block630542: 0.001 randfold mouseZ2p25_block630542: 0.001 #forester mouseZ2p25_block630542: 0.309051 #identity: 67.33 block630542 GTGTGCGTGTACAGGTGTATAT #rat_gr654417_libT2S1 22 2 block630542 GTGTGCGTGTACAGGTGTA #rat_gr654415_libT2S1 19 2 block630542 GTGTGCGTGTACAGGTGTA #rat_gr654415_libT2S2 19 2 block630542 TGTGTGCGTGTACAGGTGT #rat_gr1088803_libT2S1 19 2 block630542 TGTGTGCGTGTACAGGTGT #rat_gr1088803_libT2S2 19 2 block630542 GTGTGCGTGTACAGGTGTAT #rat_gr654416_libT1S1 20 1 block630542 GTGTGCGTGTACAGGTGTAT #rat_gr654416_libT2S2 20 1 block630542 ------------------TGTATTTACCTGTGTGTATGTTTTGTGTGCGTGTACAGGTGTATATATGGAGAAACATATACATATACACATGCACACACACG-CAACACACACACACACACACACACAA mouseZ2p25 GAGTGCCATTCCCATGTGTCTGTGTGCTCATATGTGTCTTATGTGTGCGTGTATGTATATGTATAT-----CATATTCACACATGTACATGTACACACACATCAACACATACACATATTCATAGG--- * * * * * * *** * ** ************ * * ***** * ** *** ** ***** ******** ******* ***** * ** * block630542 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 block630542 (((.......(((((((.(((.(((((((.((((.((.(((((((((((......))))))....))))).)).)))).)))) ))).))).))))))).......))). 0.990 -39.24 # mouseZ2p25 ...........((.((((..((((((....(((((((...(((((((.((((((((((((((.... .........)))))))))))))).)))))))..)))))))))))))..)))))) 0.917 -40.72 # #block630542 chromosome:17:79278162:79278270:-1 Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] #mouseZ2p25 chromosome:2:10410504:10410623:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000114864|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## Opposite_strand|Intronic_coding|ENSMUST00000041105|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TATATG)n -1 class=Simple_repeat,dust 0 class=dust,dust 0 class=dust} ## {ASMIR: mmu-mir-466b-5-as} ========== sblock12741 (miRBaseHomolog mmu-mir-201) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12741: 0.004 randfold mouseZ11p87_sblock12741: 0.001 #forester mouseZ11p87_sblock12741: 0.863648 #identity: 94.83 sblock12741 TGAACAGCGCCTTTCTGTGTAGC #rat_gr924890_libT5S1 23 17 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT5S1 20 11 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT5S1 22 10 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT5S2 22 8 sblock12741 TGAACAGCGCCTTTCTGTGTAGC #rat_gr924890_libT4S2 23 6 sblock12741 TGAACAGCGCCTTTCTGTGTAGC #rat_gr924890_libT5S2 23 6 sblock12741 TGAACAGCGCCTTTCTGTG #rat_gr924886_libT5S2 19 6 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT4S1 22 4 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT4S2 20 4 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT5S2 20 4 sblock12741 GAACAGCGCCTTTCTGTGTAGC #rat_gr482284_libT4S2 22 3 sblock12741 GAACAGCGCCTTTCTGTGTAGC #rat_gr482284_libT5S1 22 3 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT4S2 22 3 sblock12741 TGAACAGCGCCTTTCTGT #rat_gr924885_libT5S1 18 3 sblock12741 TGAACAGCGCCTTTCTGTGTAGC #rat_gr924890_libT2S1 23 2 sblock12741 GAACAGCGCCTTTCTGTGTAG #rat_gr482283_libT4S2 21 2 sblock12741 GAACAGCGCCTTTCTGTGT #rat_gr482281_libT4S2 19 2 sblock12741 GAACAGCGCCTTTCTGTGT #rat_gr482281_libT5S2 19 2 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT1S1 20 2 sblock12741 TGAACAGCGCCTTTCTGT #rat_gr924885_libT5S2 18 2 sblock12741 AACAGCGCCTTTCTGTGTAGC #rat_gr27378_libT5S2 21 1 sblock12741 GAACAGCGCCTTTCTGTGTAGC #rat_gr482284_libT2S1 22 1 sblock12741 GAACAGCGCCTTTCTGTGTAGC #rat_gr482284_libT4S1 22 1 sblock12741 TGAACAGCGCCTTTCTGTGTAGC #rat_gr924890_libT1S1 23 1 sblock12741 AACAGCGCCTTTCTGTGTAG #rat_gr27377_libT5S1 20 1 sblock12741 GAACAGCGCCTTTCTGTGTAG #rat_gr482283_libT3S2 21 1 sblock12741 GAACAGCGCCTTTCTGTGTAG #rat_gr482283_libT5S2 21 1 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT1S1 22 1 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT1S2 22 1 sblock12741 TGAACAGCGCCTTTCTGTGTAG #rat_gr924889_libT2S2 22 1 sblock12741 GAACAGCGCCTTTCTGTGTA #rat_gr482282_libT4S1 20 1 sblock12741 GAACAGCGCCTTTCTGTGTA #rat_gr482282_libT5S1 20 1 sblock12741 TGAACAGCGCCTTTCTGTGTA #rat_gr924888_libT4S1 21 1 sblock12741 TGAACAGCGCCTTTCTGTGTA #rat_gr924888_libT5S2 21 1 sblock12741 GAACAGCGCCTTTCTGTGT #rat_gr482281_libT2S1 19 1 sblock12741 GAACAGCGCCTTTCTGTGT #rat_gr482281_libT4S1 19 1 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT2S1 20 1 sblock12741 TGAACAGCGCCTTTCTGTGT #rat_gr924887_libT4S1 20 1 sblock12741 GAACAGCGCCTTTCTGTG #rat_gr482280_libT3S2 18 1 sblock12741 GAACAGCGCCTTTCTGTG #rat_gr482280_libT4S2 18 1 sblock12741 GAACAGCGCCTTTCTGTG #rat_gr482280_libT5S1 18 1 sblock12741 GAACAGCGCCTTTCTGTG #rat_gr482280_libT5S2 18 1 sblock12741 TGAACAGCGCCTTTCTGTG #rat_gr924886_libT2S1 19 1 sblock12741 TGAACAGCGCCTTTCTGTG #rat_gr924886_libT4S1 19 1 sblock12741 TGAACAGCGCCTTTCTGTG #rat_gr924886_libT4S2 19 1 sblock12741 ATGAACAGCGCCTTTCTGTG #rat_gr226397_libT5S1 20 1 sblock12741 CACTCAGTAAGGCATTGTTCT #rat_gr283677_libT5S2 21 7 sblock12741 CACTCAGTAAGGCATTGT #rat_gr283675_libT4S2 18 7 sblock12741 CACTCAGTAAGGCATTGT #rat_gr283675_libT5S2 18 5 sblock12741 CACTCAGTAAGGCATTGTTCT #rat_gr283677_libT4S2 21 4 sblock12741 CACTCAGTAAGGCATTGTTCT #rat_gr283677_libT5S1 21 4 sblock12741 CACTCAGTAAGGCATTGTTC #rat_gr283676_libT5S1 20 4 sblock12741 CACTCAGTAAGGCATTGTTC #rat_gr283676_libT5S2 20 4 sblock12741 CACTCAGTAAGGCATTGT #rat_gr283675_libT5S1 18 4 sblock12741 CACTCAGTAAGGCATTGTTC #rat_gr283676_libT4S2 20 3 sblock12741 CACTCAGTAAGGCATTGTTCTT #rat_gr283678_libT5S1 22 2 sblock12741 CACTCAGTAAGGCATTGTTCTTC #rat_gr283679_libT4S2 23 1 sblock12741 CACTCAGTAAGGCATTGTTCTTC #rat_gr283679_libT5S2 23 1 sblock12741 CACTCAGTAAGGCATTGTTCTT #rat_gr283678_libT4S2 22 1 sblock12741 CACTCAGTAAGGCATTGTTCT #rat_gr283677_libT2S2 21 1 sblock12741 CACTCAGTAAGGCATTGTTC #rat_gr283676_libT2S1 20 1 sblock12741 CACTCAGTAAGGCATTGTTC #rat_gr283676_libT4S1 20 1 sblock12741 CACTCAGTAAGGCATTGT #rat_gr283675_libT1S1 18 1 sblock12741 GCTACCTTCAATGATGTTATGTACAGTACCTCACTCAGTAAGGCATTGTTCTTCTATACTAATAAATGAACAGCGCCTTTCTGTGTAGCGTAATGTGCAACCTGGACAGCATTTGTAGTA mouseZ11p87 ------------------------------TTACTCAGTAAGGCATTGTTCTTCTATATTAATAAATGAACAGTGCCTTTCTGTGTAG-------------------------------- * ************************** ************** ************** sblock12741 (((((....((((.((((.((((((.(((((.((.(((.(((((.((((((...(((....)))...)))))).))))).))).)))).))).)))))).....)))).)))).))))). 1.000 -37.10 # mouseZ11p87 .(((.(((.((((((((((((...(((....)))...)))))))))))).))).))). 1.000 -24.10 # #sblock12741 chromosome:X:154169121:154169240:-1 intergenic #mouseZ11p87 chromosome:X:65241223:65241382:-1 Same_strand|Boundary_non-coding|ENSMUST00000083470|ENSMUSG00000065404|miRNA|mmu-mir-201 [Source:miRBase;Acc:MI0000244] ## {MIR: mmu-mir-201}