candidate homolog loci of miRBase miRNAs
miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK (5 loci)
hsa-mir-496
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-496 5arm | 13 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-496 3arm | 1437 | 1029 | 8 | 2 | 10 | 6 | 6 | 2 | 9 | 25 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-496 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-496 3arm | 0.048 | 0.045 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.002 |
sblock10516 (miRBaseHomolog hsa-mir-496) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-496 | 0.001 | no | no | 0.37/0.50 | 18/23/0.71 | 0.0 0.0 0.9 | 0.0 0.6 1.5 | 1 13 1815 | 0 0 0 | 1 2 10 | 0 0 0 | 6 25 26 | 23 3 2 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.32 0.15 0.14 | 4 2 2 | 2552 | 10 | -1 | 2 |
| Located in cluster 75: rno-mir-154, hsa-mir-496 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------GUAUUAC------------------------------------------------- | 1356 | novel | |||||||||
| seed | -----------------------------------------------------------GAGUAUU--------------------------------------------------- | 1162 | novel | |||||||||
| seed | --------------------------GGUUGUC------------------------------------------------------------------------------------ | 15 | novel | |||||||||
| seed | ------------------------------------------------------------AGUAUUA-------------------------------------------------- | 14 | novel | |||||||||
| seed | ---------------------------GUUGUCC----------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------UAUUACA------------------------------------------------ | 2 | novel | |||||||||
| seed | -------AAUCAAG------------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------AGTATTACATGGCCAATCTCC------------------------------------ | 21 | 436 | 333 | 1 | 1 | 5 | 1 | 2 | 1 | 5 | 13 | |
| ----------------------------------------------------------TGAGTATTACATGGCCAATCTC------------------------------------- | 22 | 364 | 171 | - | 1 | - | 1 | - | - | 2 | 2 | |
| ----------------------------------------------------------TGAGTATTACATGGCCAA----------------------------------------- | 18 | 152 | 171 | 1 | - | - | 1 | 1 | - | 1 | 1 | |
| ------------------------------------------------------------AGTATTACATGGCCAATC--------------------------------------- | 18 | 188 | 126 | 2 | - | 2 | 1 | - | - | 1 | 5 | |
| ------------------------------------------------------------AGTATTACATGGCCAATCTC------------------------------------- | 20 | 104 | 82 | 3 | - | 3 | 1 | 3 | - | - | 3 | |
| ----------------------------------------------------------TGAGTATTACATGGCCAATC--------------------------------------- | 20 | 69 | 49 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------TGAGTATTACATGGCCAATCTCC------------------------------------ | 23 | 63 | 45 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------TGAGTATTACATGGCCAAT---------------------------------------- | 19 | 19 | 21 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------AGTATTACATGGCCAATCT-------------------------------------- | 19 | 14 | 10 | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------TGAGTATTACATGGCCAATCT-------------------------------------- | 21 | 18 | 6 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------------------------------AGTATTACATGGCCAATCTCCT----------------------------------- | 22 | 3 | 6 | - | - | - | - | - | - | - | - | |
| -------------------------AGGTTGTCCATGGTGTGTTC------------------------------------------------------------------------ | 20 | 6 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GAGTATTACATGGCCAATCTC------------------------------------- | 21 | 2 | 4 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GAGTATTACATGGCCAATC--------------------------------------- | 19 | 4 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------AGGTTGTCCATGGTGTGT-------------------------------------------------------------------------- | 18 | 3 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GAGTATTACATGGCCAATCTCC------------------------------------ | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------AGGTTGTCCATGGTGTGTT------------------------------------------------------------------------- | 19 | - | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------GTATTACATGGCCAATCT-------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------GTATTACATGGCCAATCTCC------------------------------------ | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------GGTTGTCCATGGTGTGTTCA----------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ------AAATCAAGTGTTCGAATGG-------------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------GGTTGTCCATGGTGTGTTCAT---------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------GAGTATTACATGGCCAAT---------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------AGGTTGTCCATGGTGTGTTCA----------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | CTCTCGAAATCAAGTGTTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGCACTAAAATCTTCCTGGGAG---------- | |||||||||||
| human | ---CCCAAGTCAGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTCAATTCTTCTTGGGAAACGTCACGAG | |||||||||||
| mouse | -----------------------GGAGGTTGCCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCC------------------------------------ | |||||||||||
| ******** ************************************************* | ||||||||||||
| .........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... | ENSRNOT00000062159 ENSRNOG00000040406 | |||||||||||
| rat | ((((((((....((((.(((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))......)))..))))) | 0.980 -39.50 | ||||||||||
| human | ((((((...(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........))))))............ | 0.939 -44.20 | ||||||||||
| mouse | ((((((((.(((((..(((((((((........)))))))))..))))).)))))))) | 1.000 -24.60 | ||||||||||
| rat | chromosome:6:134420356:134420462:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062159|ENSRNOG00000040406 ## ENSRNOG00000040406|miRNA|| |
| human | chromosome:14:100596663:100596776:1 | Same_strand|Boundary_non-coding|ENST00000385226|ENSG00000207961|miRNA|hsa-mir-496 [Source:miRBase;Acc:MI0003136] ## {MIR: hsa-mir-496} |
| mouse | chromosome:12:110977297:110977443:1 | Same_strand|Boundary_non-coding|ENSMUST00000093627|ENSMUSG00000070136|miRNA|mmu-mir-496 [Source:miRBase;Acc:MI0004589] ## {MIR: mmu-mir-496} |
hsa-mir-615
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-615 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 8 | 6 |
| hsa-mir-615 3arm | 3 | 1 | 2 | 1 | 15 | 7 | 3 | 0 | 554 | 125 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-615 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0.000 |
| hsa-mir-615 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0 | 0.037 | 0.008 |
sblock11522 (miRBaseHomolog hsa-mir-615) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-615 | 0.001 | no | no | 0.64/0.84 | 18/24/0.79 | 0.2 0.0 | 1.5 1.1 | 14 471 | 0 0 | 2 9 | 0 0 | 31 23 | 6 9 | 5arm 3arm | 1 1 | nd nd | 0.15 0.09 | 2 2 | 725 | 9 | 4 | 4 |
| reads | miRBase family seed | ||||||||||
| seed | ----------------------------------------------------------------------------------------------CCGAGCC-------------------------------------------------------- | 699 | novel | ||||||||
| seed | ---------------------------------------------------GGGGUCC--------------------------------------------------------------------------------------------------- | 11 | novel | ||||||||
| seed | -----------------------------------------------------------------------------------------------CGAGCCU------------------------------------------------------- | 8 | novel | ||||||||
| seed | ----------------------------------------------------GGGUCCC-------------------------------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -------------------------------------------------------------------------------------------------AGCCUGG----------------------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------------CGGUCCG------------------------------------------------------------ | 1 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------------------UCCGAGC--------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCTCT------------------------------------------- | 21 | 1 | - | 1 | 1 | 5 | 1 | 1 | 216 | 44 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCTCTTC----------------------------------------- | 23 | - | - | - | - | 2 | 1 | - | 91 | 26 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCC---------------------------------------------- | 18 | 2 | - | - | - | 5 | 2 | 1 | 90 | 17 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCTC-------------------------------------------- | 20 | - | 1 | 1 | - | 3 | 2 | - | 74 | 16 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCTCTT------------------------------------------ | 22 | - | - | - | - | - | 1 | - | 49 | 11 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCT--------------------------------------------- | 19 | - | - | - | - | - | - | - | 21 | 10 | |
| ----------------------------------------------------------------------------------------------CCGAGCCTGGGTCTCCCTCT------------------------------------------- | 20 | - | - | - | - | - | - | - | 5 | - | |
| --------------------------------------------------GGGGGTCCCCGGTGCTCGGATC------------------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 2 | 2 | |
| --------------------------------------------------GGGGGTCCCCGGTGCTCGGA--------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 2 | 2 | |
| ---------------------------------------------------------------------------------------------TCCGAGCCTGGGTCTCCCTCTTCC---------------------------------------- | 24 | - | - | - | - | - | - | 1 | 2 | - | |
| ----------------------------------------------------------------------------------------------CCGAGCCTGGGTCTCCCTCTTC----------------------------------------- | 22 | - | - | - | - | - | - | - | 3 | - | |
| ---------------------------------------------------GGGGTCCCCGGTGCTCGGATCT------------------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | 2 | - | |
| ------------------------------------------------------------------------------------------------GAGCCTGGGTCTCCCTCT------------------------------------------- | 18 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------GGGGGTCCCCGGTGCTCGGATCTC----------------------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------GGGGTCCCCGGTGCTCGGA--------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------GTCCGAGCCTGGGTCTCCCTC-------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------GGGGGTCCCCGGTGCTCGG---------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------GGGGGTCCCCGGTGCTCG----------------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------------------TCGGTCCGAGCCTGGGTCTCCC---------------------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | |
| rat | -------------------GAGGATTCCAGCGACTCGGGAGGGGCGGGAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTTCCCCCCATCCCCCCTCAGCCCCTC------------------ | ||||||||||
| human | -----------------------------------------------GAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTT------------------------------------------ | ||||||||||
| mouse | GCCAGTGCTCGCGGCTCCGGAGGATTCCAGCGACTCGGGAGGGGCGGGAGGGGGGTCCCCGGTGCTCGGATCTCGAGGGTGCTTATTGTTCGGTCCGAGCCTGGGTCTCCCTCTTCCCCCCATCCCCCCTCAGCCCCTCCGGCCGCAGAGTGAAGGC | ||||||||||
| ******************************************************************** | |||||||||||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000022247 ENSRNOG00000016598 NP_001101586.1 | ||||||||||
| ..... ...............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............. ..... | ENSRNOT00000054621 ENSRNOG00000036514 | ||||||||||
| rat | ((((......((((...((((((((.((((((((((..(((((.(((((((((..((.(((....))).)).))))))))))))))..)))))))))))))).))))...)).)).)))) | 0.530 -64.80 | |||||||||
| human | ((((((((..(((((.(((((((((..((.(((....))).)).)))))))))))))))))))))).. | 1.000 -38.10 | |||||||||
| mouse | (((..((((((((((..((((((......((((...((((((((.((((((((((..(((((.(((((((((..((.(((....))).)).))))))))))))))..)))))))))))))).))))...)).)).))))))))))).)))))..))) | 0.914 -91.40 | |||||||||
| rat | chromosome:7:141778215:141778334:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054621|ENSRNOG00000036514 ## Same_strand|Intronic_coding|ENSRNOT00000022247|ENSRNOG00000016598 ## ENSRNOG00000016598|protein_coding|NP_001101586.1|homeo box C5 [Source:RefSeq_peptide;Acc:NP_001101586] ## ENSRNOG00000036514|miRNA|| ## {Repeats: dust 141778334 141778335 0 class=dust} ## {SimpF: oe = 0.80 1 CpG} |
| human | chromosome:12:52713967:52714126:1 | Same_strand|Intronic_non-coding|ENST00000303406|ENSG00000198353|protein_coding|Homeobox protein Hox-C4 (Hox-3E)(CP19) [Source:UniProtKB/Swiss-Prot;Acc:P09017] ## Same_strand|Intronic_coding|ENST00000312492|ENSG00000172789|protein_coding|Homeobox protein Hox-C5 (Hox-3D)(CP11) [Source:UniProtKB/Swiss-Prot;Acc:Q00444] ## Same_strand|Boundary_non-coding|ENST00000384839|ENSG00000207571|miRNA|hsa-mir-615 [Source:miRBase;Acc:MI0003628] ## {Repeats: dust 0 class=dust} ## {SimpF: oe = 0.77 0 CpG,rank = 2 -1 FirstEF, -1 Eponine} ## {MIR: hsa-mir-615} |
| mouse | chromosome:15:102845307:102845463:1 | Same_strand|Intronic_coding|ENSMUST00000001709|ENSMUSG00000022485|protein_coding|homeo box C5 Gene [Source:MGI Symbol;Acc:MGI:96196] ## Same_strand|Boundary_non-coding|ENSMUST00000102056|ENSMUSG00000076010|miRNA|mmu-mir-615 [Source:miRBase;Acc:MI0005004] ## {Repeats: dust 0 class=dust} ## {SimpF: oe = 0.81 -1 CpG} ## {MIR: mmu-mir-615} |
mmu-mir-764
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-764 5arm | 164 | 160 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 2 |
| mmu-mir-764 3arm | 111 | 143 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-764 5arm | 0.005 | 0.007 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0.000 | 0.000 |
| mmu-mir-764 3arm | 0.004 | 0.006 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock12652 (miRBaseHomolog mmu-mir-764) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-764 | 0.001 | no | no | 0.55/0.62 | 18/26/0.88 | 0.0 0.0 | 0.6 0.5 | 200 179 | 0 0 | 5 3 | 0 0 | 26 21 | 2 4 | 5arm 3arm | 1 1 | nd nd | 0.14 0.14 | 1 1 | 584 | 6 | 2 | 4 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------GUGCUCA---------------------------------------------------------------------------------------------- | 328 | novel | |||||
| seed | ------------------------------------------------------------------------------------AGGAGGC------------------------------------------------------- | 240 | novel | |||||
| seed | -------------------------------------------------------------------------------------GGAGGCC------------------------------------------------------ | 12 | novel | |||||
| seed | ----------------------------------------------------------------------------------GGAGGAG--------------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------------------------------GAGGAGG-------------------------------------------------------- | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------GGTGCTCACATGTCCTCCTCCA-------------------------------------------------------------------------------- | 22 | 90 | 82 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAACTGTC--------------------------------------- | 24 | 67 | 82 | 1 | - | - | - | |
| --------------------------------------------GGTGCTCACATGTCCTCC------------------------------------------------------------------------------------ | 18 | 25 | 28 | - | 1 | - | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAACT------------------------------------------ | 21 | 21 | 30 | - | - | - | - | |
| --------------------------------------------GGTGCTCACATGTCCTCCTC---------------------------------------------------------------------------------- | 20 | 22 | 15 | - | - | - | 1 | |
| --------------------------------------------GGTGCTCACATGTCCTCCTCC--------------------------------------------------------------------------------- | 21 | 17 | 18 | - | - | - | - | |
| --------------------------------------------GGTGCTCACATGTCCTCCTCCAT------------------------------------------------------------------------------- | 23 | 6 | 14 | - | - | - | 1 | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAAC------------------------------------------- | 20 | 7 | 13 | - | - | - | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAACTG----------------------------------------- | 22 | 7 | 4 | - | - | - | - | |
| --------------------------------------------GGTGCTCACATGTCCTCCT----------------------------------------------------------------------------------- | 19 | 4 | 3 | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGAGGCCATAGTGGCAACTGTC--------------------------------------- | 23 | 2 | 4 | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGAGGCCATAGTGGCAACT------------------------------------------ | 20 | 2 | 3 | - | - | - | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAACTGT---------------------------------------- | 23 | 2 | 1 | - | - | - | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCAA-------------------------------------------- | 19 | - | 3 | - | - | - | - | |
| -----------------------------------------------------------------------------------GAGGAGGCCATAGTGGCA--------------------------------------------- | 18 | - | 2 | - | - | - | - | |
| ----------------------------------------------------------------------------------GGAGGAGGCCATAGTGGCAACT------------------------------------------ | 22 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------------------------GGAGGAGGCCATAGTGGCAACTGTC--------------------------------------- | 25 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGAGGCCATAGTGGCAA-------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------TGGAGGAGGCCATAGTGGCAACT------------------------------------------ | 23 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------TGGAGGAGGCCATAGTGGCAACTGTC--------------------------------------- | 26 | 1 | - | - | - | - | - | |
| rat | ------------------TCAACACAATCAAAATCTCGGAGGCAGGTGCTCACATGTCCTCCTCCATGCCT-ACACATACATGGAGGAGGCCATAGTGGCAACTGTCACCATGATTGATTTCGTTGGG------------------ | |||||||
| human | ------------------------------------------CAGGTGCTCACTTGTCCTCCTCCATGCTTGGAAAATGCAGGGAGGAGGCCATAGTGGCAACTG----------------------------------------- | |||||||
| mouse | GGTTATCGTGTCATAGTATCAACACAATCTGAATCTTGGAGGCAGGTGCTCACATGTCCTCCTCCATGCTT-ATAAATACATGGAGGAGGCCATAGTGGCAACTGTCACCATGATTGATTTCGTTGGGATAGAAGATTGACAAGCC | |||||||
| *********** *************** * * ** ** *********************** | ||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>. ..... | ENSRNOT00000062180 ENSRNOG00000040427 | |||||||
| rat | (((((..(((((..(((..((.(((((.(((.((((((.(((((((((((... .......))))))))))).))).)))))).))))).))..))))))))..))))). | 1.000 -49.20 | ||||||
| human | (((.(((.((((((.((((((((.(((((....)).))).)))))))).)).))))))).))) | 1.000 -33.10 | ||||||
| mouse | ((((....(((((.....(((((..((((..((((.(((.(((((.(((.((((((.(((((((((((... .......))))))))))).))).)))))).))))).))).))))))))..)))))..........))))))))) | 0.987 -55.56 | ||||||
| rat | chromosome:X:31207233:31207341:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000062180|ENSRNOG00000040427 ## ENSRNOG00000040427|miRNA|| |
| human | chromosome:X:113780142:113780290:1 | Same_strand|Intronic_non-coding|ENST00000371950|ENSG00000147246|protein_coding|5-hydroxytryptamine receptor 2C (5-HTR2C)(5-HT-2C)(5-HT2C)(5HT-1C)(Serotonin receptor 2C) [Source:UniProtKB/Swiss-Prot;Acc:P28335] ## Same_strand|Boundary_non-coding|ENST00000390811|ENSG00000212100|miRNA| |
| mouse | chromosome:X:143436784:143436928:1 | Same_strand|Intronic_non-coding|ENSMUST00000112831|ENSMUSG00000041380|protein_coding|5-hydroxytryptamine (serotonin) receptor 2C Gene [Source:MGI (curated);Acc:Htr2c-002] ## Same_strand|Boundary_non-coding|ENSMUST00000103259|ENSMUSG00000076458|miRNA|mmu-mir-764 [Source:miRBase;Acc:MI0004310] ## {MIR: mmu-mir-764} |
hsa-mir-362
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-362 5arm | 80 | 48 | 94 | 157 | 488 | 372 | 109 | 136 | 80 | 212 |
| hsa-mir-362 3arm | 294 | 211 | 305 | 441 | 984 | 808 | 170 | 302 | 269 | 374 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-362 5arm | 0.003 | 0.002 | 0.005 | 0.009 | 0.024 | 0.028 | 0.008 | 0.007 | 0.005 | 0.014 |
| hsa-mir-362 3arm | 0.010 | 0.009 | 0.017 | 0.026 | 0.048 | 0.061 | 0.013 | 0.016 | 0.018 | 0.025 |
sblock12776 (miRBaseHomolog hsa-mir-362) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-362 | 0.001 | no | no | 0.38/0.53 | 18/24/0.71 | 0.0 0.0 | 0.5 1.3 | 638 1851 | 0 0 | 10 10 | 0 0 | 28 32 | 7 4 | 5arm 3arm | 1 1 | nd nd | 0.16 0.05 | 3 1 | 5934 | 10 | -1 | 3 |
| Located in cluster 95: hsa-mir-362, rno-mir-501 |
| Member of family miR-329 (seed ACACACC): hsa-mir-362, rno-mir-329 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------------ACACACC----------------------------------------------- | 4146 | miR-329 | |||||||||
| seed | -----------------------------AUCCUUG------------------------------------------------------------------------------------ | 1767 | novel | |||||||||
| seed | -----------------------------------------------------------------AACACAC------------------------------------------------ | 9 | novel | |||||||||
| seed | ------------------------------UCCUUGG----------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | --------------------------------CUUGGAA--------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------------UUGGAAC-------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------GGAACCU------------------------------------------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------------CACCUGU-------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------------------------CACACCU---------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------------------ACACCUG--------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------AACACACCTGTTCAAGGATTCA--------------------------------- | 22 | 79 | 61 | 91 | 136 | 326 | 245 | 46 | 95 | 88 | 105 | |
| ----------------------------AATCCTTGGAACCTAGGTGTG----------------------------------------------------------------------- | 21 | 36 | 25 | 55 | 50 | 236 | 158 | 57 | 61 | 48 | 67 | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGATTC---------------------------------- | 21 | 55 | 33 | 60 | 68 | 189 | 173 | 28 | 65 | 49 | 68 | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGAT------------------------------------ | 19 | 60 | 33 | 53 | 65 | 164 | 124 | 30 | 48 | 39 | 63 | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGATTCAA-------------------------------- | 23 | 48 | 34 | 47 | 80 | 146 | 96 | 30 | 45 | 46 | 37 | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGA------------------------------------- | 18 | 31 | 40 | 40 | 72 | 115 | 128 | 25 | 37 | 34 | 85 | |
| ----------------------------AATCCTTGGAACCTAGGTGTGA---------------------------------------------------------------------- | 22 | 16 | 6 | 9 | 49 | 91 | 80 | 20 | 30 | 9 | 70 | |
| ----------------------------AATCCTTGGAACCTAGGTG------------------------------------------------------------------------- | 19 | 14 | 8 | 14 | 27 | 73 | 60 | 12 | 18 | 10 | 40 | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGATT----------------------------------- | 20 | 21 | 9 | 13 | 15 | 44 | 37 | 11 | 10 | 13 | 15 | |
| ----------------------------AATCCTTGGAACCTAGGT-------------------------------------------------------------------------- | 18 | 10 | 7 | 11 | 18 | 41 | 39 | 9 | 13 | 12 | 18 | |
| ----------------------------AATCCTTGGAACCTAGGTGT------------------------------------------------------------------------ | 20 | 3 | 2 | 2 | 8 | 25 | 24 | 9 | 11 | 1 | 11 | |
| ----------------------------AATCCTTGGAACCTAGGTGTGAA--------------------------------------------------------------------- | 23 | 1 | - | 2 | 3 | 21 | 6 | 1 | 3 | - | 6 | |
| ----------------------------------------------------------------CAACACACCTGTTCAAGGATTCA--------------------------------- | 23 | - | - | - | - | - | 3 | - | - | - | - | |
| -----------------------------------------------------------------AACACACCTGTTCAAGGATTCAAA------------------------------- | 24 | - | - | - | 1 | - | 1 | - | - | - | 1 | |
| ----------------------------------------------------------------CAACACACCTGTTCAAGGA------------------------------------- | 19 | - | - | - | 2 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------CAACACACCTGTTCAAGGAT------------------------------------ | 20 | - | - | - | - | - | - | - | 2 | - | - | |
| -----------------------------ATCCTTGGAACCTAGGTGTGA---------------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | 1 | - | - | - | |
| -----------------------------ATCCTTGGAACCTAGGTG------------------------------------------------------------------------- | 18 | - | - | 1 | - | 1 | - | - | - | - | - | |
| -------------------------------CCTTGGAACCTAGGTGTGAATGC------------------------------------------------------------------ | 23 | - | - | - | - | - | 2 | - | - | - | - | |
| ----------------------------AATCCTTGGAACCTAGGTGTGAAT-------------------------------------------------------------------- | 24 | - | - | - | 1 | - | - | - | - | - | - | |
| -------------------------------CCTTGGAACCTAGGTGTGA---------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------ACACACCTGTTCAAGGAT------------------------------------ | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------TGGAACCTAGGTGTGAATGC------------------------------------------------------------------ | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------------------CACACCTGTTCAAGGATTCA--------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------CAACACACCTGTTCAAGG-------------------------------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------ACACCTGTTCAAGGATTCAA-------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| --------------------------------CTTGGAACCTAGGTGTGAA--------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | TGAGTCTTCTTGCTTGCTCCGCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGCCTCGTCTGCGTGTTTGGCCCA | |||||||||||
| human | --------------------------TGAATCCTTGGAACCTAGGTGTGAGTGCTATTTCAGTGCAACACACCTATTCAAGGATTCA--------------------------------- | |||||||||||
| mouse | ---------------GCTCCCCCTCTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAAAGAGGCTGAGC--------------------- | |||||||||||
| *********************** **** ***************** ************ | ||||||||||||
| .............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................................... | ENSRNOT00000054391 ENSRNOG00000036268 | |||||||||||
| rat | ((.(((....(((..((((.((((((.(((((((((((...((((((((..(((.((....))))).)))))))))))))))))))..)))))).)))).......))).....))).)) | 0.730 -48.70 | ||||||||||
| human | .(((((((((((...((((((((.(((((.....)))))..))))))))))))))))))). | 1.000 -29.80 | ||||||||||
| mouse | ((((..(((((.(((((((((((...((((((((..(((.((....))))).)))))))))))))))))))..)))))..)))) | 1.000 -40.80 | ||||||||||
| rat | chromosome:X:27330423:27330542:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054391|ENSRNOG00000036268 ## ENSRNOG00000036268|miRNA|| |
| human | chromosome:X:49660268:49660427:1 | Same_strand|Intronic_non-coding|ENST00000376091|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## Same_strand|Boundary_non-coding|ENST00000307367|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## {MIR: hsa-mir-362} |
| mouse | chromosome:X:6819098:6819181:-1 | Same_strand|Boundary_non-coding|ENSMUST00000004428|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## Same_strand|Intronic_coding|ENSMUST00000115746|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## {MIR: mmu-mir-362} |
mmu-mir-201
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-201 5arm | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 16 | 14 | 17 |
| mmu-mir-201 3arm | 4 | 1 | 6 | 1 | 0 | 2 | 10 | 22 | 48 | 32 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-201 5arm | 0.000 | 0 | 0.000 | 0.000 | 0 | 0 | 0.000 | 0.001 | 0.001 | 0.001 |
| mmu-mir-201 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.001 | 0.001 | 0.003 | 0.002 |
sblock12741 (miRBaseHomolog mmu-mir-201) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-201 | 0.004 | no | no | 0.41/0.56 | 18/23/0.77 | 0.0 0.0 | 1.6 1.2 | 42 64 | 0 0 | 7 9 | 0 0 | 31 31 | 5 5 | 5arm 3arm | 1 1 | nd nd | 0.17 0.15 | 1 1 | 177 | 9 | 0 | 2 |
| Located in cluster 92: mmu-mir-201, hsa-mir-507 |
| Member of family novel75 (seed GAACAGC): mmu-mir-201, block1309885_cand |
| reads | miRBase family seed | ||||||||||
| seed | -------------------------------------------------------------------GAACAGC---------------------------------------------- | 99 | novel | ||||||||
| seed | --------------------------------ACUCAGU--------------------------------------------------------------------------------- | 51 | novel | ||||||||
| seed | --------------------------------------------------------------------AACAGCG--------------------------------------------- | 24 | novel | ||||||||
| seed | ---------------------------------------------------------------------ACAGCGC-------------------------------------------- | 2 | novel | ||||||||
| seed | ------------------------------------------------------------------UGAACAG----------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGTGTAGC------------------------------- | 23 | 1 | - | 2 | - | - | - | 6 | 17 | 6 | |
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGTGTAG-------------------------------- | 22 | 1 | 1 | - | 1 | - | 4 | 3 | 10 | 8 | |
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGTGT---------------------------------- | 20 | 2 | - | 1 | - | - | 1 | 4 | 11 | 4 | |
| -------------------------------CACTCAGTAAGGCATTGT----------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | 7 | 4 | 5 | |
| -------------------------------CACTCAGTAAGGCATTGTTCT-------------------------------------------------------------------- | 21 | - | - | - | 1 | - | - | 4 | 4 | 7 | |
| -------------------------------CACTCAGTAAGGCATTGTTC--------------------------------------------------------------------- | 20 | - | - | 1 | - | - | 1 | 3 | 4 | 4 | |
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGTG----------------------------------- | 19 | - | - | 1 | - | - | 1 | 1 | - | 6 | |
| -------------------------------------------------------------------GAACAGCGCCTTTCTGTGTAGC------------------------------- | 22 | - | - | 1 | - | - | 1 | 3 | 3 | - | |
| -------------------------------------------------------------------GAACAGCGCCTTTCTGTGT---------------------------------- | 19 | - | - | 1 | - | - | 1 | 2 | - | 2 | |
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGT------------------------------------ | 18 | - | - | - | - | - | - | - | 3 | 2 | |
| -------------------------------------------------------------------GAACAGCGCCTTTCTGTG----------------------------------- | 18 | - | - | - | - | 1 | - | 1 | 1 | 1 | |
| -------------------------------------------------------------------GAACAGCGCCTTTCTGTGTAG-------------------------------- | 21 | - | - | - | - | 1 | - | 2 | - | 1 | |
| -------------------------------CACTCAGTAAGGCATTGTTCTT------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | 2 | - | |
| -------------------------------------------------------------------GAACAGCGCCTTTCTGTGTA--------------------------------- | 20 | - | - | - | - | - | 1 | - | 1 | - | |
| ------------------------------------------------------------------TGAACAGCGCCTTTCTGTGTA--------------------------------- | 21 | - | - | - | - | - | 1 | - | - | 1 | |
| -------------------------------CACTCAGTAAGGCATTGTTCTTC------------------------------------------------------------------ | 23 | - | - | - | - | - | - | 1 | - | 1 | |
| --------------------------------------------------------------------AACAGCGCCTTTCTGTGTAGC------------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------ATGAACAGCGCCTTTCTGTG----------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------AACAGCGCCTTTCTGTGTAG-------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| rat | GCTACCTTCAATGATGTTATGTACAGTACCTCACTCAGTAAGGCATTGTTCTTCTATACTAATAAATGAACAGCGCCTTTCTGTGTAGCGTAATGTGCAACCTGGACAGCATTTGTAGTA | ||||||||||
| mouse | ------------------------------TTACTCAGTAAGGCATTGTTCTTCTATATTAATAAATGAACAGTGCCTTTCTGTGTAG-------------------------------- | ||||||||||
| * ************************** ************** ************** | |||||||||||
| rat | (((((....((((.((((.((((((.(((((.((.(((.(((((.((((((...(((....)))...)))))).))))).))).)))).))).)))))).....)))).)))).))))). | 1.000 -37.10 | |||||||||
| mouse | .(((.(((.((((((((((((...(((....)))...)))))))))))).))).))). | 1.000 -24.10 | |||||||||
| rat | chromosome:X:154169121:154169240:-1 | intergenic |
| mouse | chromosome:X:65241223:65241382:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083470|ENSMUSG00000065404|miRNA|mmu-mir-201 [Source:miRBase;Acc:MI0000244] ## {MIR: mmu-mir-201} |
miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK (4 loci)
mmu-mir-1193
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1193 5arm | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-1193 3arm | 493 | 364 | 98 | 31 | 28 | 23 | 27 | 26 | 60 | 72 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1193 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-1193 3arm | 0.016 | 0.016 | 0.005 | 0.002 | 0.001 | 0.002 | 0.002 | 0.001 | 0.004 | 0.005 |
sblock10496 (miRBaseHomolog mmu-mir-1193) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-1193 | 0.003 | no | no | 0.40/0.58 | 18/24/0.69 | 0.5 0.0 | 0.0 0.7 | 2 662 | 0 0 | 2 10 | 0 0 | 31 32 | 1 2 | 5arm 3arm | 1 1 | nd nd | 0.10 0.14 | 1 1 | 1224 | 10 | 1 | 2 |
| Located in cluster 70: rno-mir-494, mmu-mir-1193 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------------------------------------AGGUCAC------------------------------------------------------- | 1216 | novel | |||||||||
| seed | -------------------------------------------------------------------------------------GGUCACC------------------------------------------------------ | 6 | novel | |||||||||
| seed | --------------------------------------------------GGUAAAC----------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------UGGUAAA------------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACTATCC----------------------------------------- | 22 | 259 | 198 | 14 | 8 | 11 | 14 | 12 | 8 | 27 | 31 | |
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACTA-------------------------------------------- | 19 | 121 | 77 | 32 | 5 | 6 | 4 | 5 | 7 | 15 | 22 | |
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACTATC------------------------------------------ | 21 | 84 | 51 | 36 | 14 | 8 | 5 | 7 | 6 | 10 | 14 | |
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACT--------------------------------------------- | 18 | 22 | 26 | 13 | 4 | 2 | - | 3 | 4 | 7 | 5 | |
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACTAT------------------------------------------- | 20 | 6 | 7 | 3 | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGTCACCCGTTTTACTATCC----------------------------------------- | 21 | - | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGTCACCCGTTTTACTA-------------------------------------------- | 18 | - | 1 | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------------------TAGGTCACCCGTTTTACTATCCGC--------------------------------------- | 24 | - | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------------AGGTCACCCGTTTTACTATC------------------------------------------ | 20 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------ATGGTAAACCGGTGACGTGC------------------------------------------------------------------------------ | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------TGGTAAACCGGTGACGTGC------------------------------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | -----------------GGTGCTTACTGCTCTCAGGGTAGCTGTGAGGATGGTAAACCGGTGACGTGCACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCGCCAGCACCCAGACCGTCTGTGGGATGATACC--------- | |||||||||||
| human | ----------------------------------------------GGATGGTAGACCGGTGACGTGCACTTCATTTACGATGTAGGTCACCCGTTTGACTATCC----------------------------------------- | |||||||||||
| mouse | GTGACTGAAGGGACAATGATGCCCACTGTTCTCGGGGTAGCTGTGTGGATGGTAGACCGGTGACGTACACTTCATTTATGCTGTAGGTCACCCGTTTTACTATCCACCAACACCCAGACCATCTGTGGGAAGACACCTTGGTGCAC | |||||||||||
| ******** *********** *********** * **************** ******* | ||||||||||||
| >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ ..... | ENSRNOT00000063357 ENSRNOG00000041604 | |||||||||||
| rat | (((((((((.((..((.((((.((((...(((((((((((.((((((.((((............)))).)))))).)))).)))))))..)))))))).))..))..)))))....)))) | 0.710 -47.10 | ||||||||||
| human | (((((((((((.((((((.((((..((......)))))).)))))).))))).)))))) | 1.000 -26.80 | ||||||||||
| mouse | ((((((.((((..........(((((((.(((.(((((...((.(((((((((((((.((((((.((((............)))).)))))).)))).))))))))))))).)))))).))...)))))......))))))).))) | 0.917 -54.49 | ||||||||||
| rat | chromosome:6:134395196:134395315:1 | Same_strand|Exonic_non-coding|ENSRNOT00000063357|ENSRNOG00000041604 ## ENSRNOG00000041604|miRNA|| |
| human | chromosome:14:100566103:100566262:1 | Same_strand|Boundary_non-coding|ENST00000408109|ENSG00000221036|miRNA| |
| mouse | chromosome:12:110953877:110954022:1 | Same_strand|Boundary_non-coding|ENSMUST00000116761|ENSMUSG00000080411|miRNA|mmu-mir-1193 [Source:miRBase;Acc:MI0006298] ## {MIR: mmu-mir-1193} |
hsa-mir-802
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-802 5arm | 8 | 2 | 1516 | 2063 | 6 | 27 | 3 | 12 | 74 | 96 |
| hsa-mir-802 3arm | 0 | 3 | 456 | 578 | 2 | 0 | 3 | 3 | 12 | 15 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-802 5arm | 0.000 | 0.000 | 0.082 | 0.122 | 0.000 | 0.002 | 0.000 | 0.001 | 0.005 | 0.006 |
| hsa-mir-802 3arm | 0 | 0.000 | 0.025 | 0.034 | 0.000 | 0 | 0.000 | 0.000 | 0.001 | 0.001 |
sblock3090 (miRBaseHomolog hsa-mir-802) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-802 | 0.001 | no | no | 0.28/0.53 | 18/26/0.67 | 0.0 0.1 | 1.1 2.4 | 2862 881 | 0 0 | 10 8 | 0 0 | 26 23 | 3 7 | 5arm 3arm | 1 1 | nd nd | 0.13 0.11 | 1 1 | 4879 | 10 | 1 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------CAGUAAC------------------------------------------------------------------------------------------- | 3327 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------CGGAGAG----------------------------------------------------- | 859 | novel | |||||||||
| seed | ----------------------------------------------AGUAACA------------------------------------------------------------------------------------------ | 458 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------GGAGAGU---------------------------------------------------- | 213 | novel | |||||||||
| seed | --------------------------------------------UCAGUAA-------------------------------------------------------------------------------------------- | 20 | novel | |||||||||
| seed | ------------------------------------------------UAACAAA---------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------------GUAACAA----------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------TCAGTAACAAAGATTCATCCT------------------------------------------------------------------------------ | 21 | 2 | - | 363 | 562 | 6 | 13 | 1 | 1 | 27 | 16 | |
| --------------------------------------------TCAGTAACAAAGATTCATC-------------------------------------------------------------------------------- | 19 | 2 | 1 | 386 | 397 | - | 3 | - | 2 | 10 | 13 | |
| --------------------------------------------TCAGTAACAAAGATTCATCCTTG---------------------------------------------------------------------------- | 23 | 2 | - | 202 | 275 | - | 1 | - | - | 9 | 13 | |
| --------------------------------------------TCAGTAACAAAGATTCATCCTT----------------------------------------------------------------------------- | 22 | 1 | - | 183 | 270 | - | 3 | - | 1 | 9 | 10 | |
| --------------------------------------------TCAGTAACAAAGATTCATCC------------------------------------------------------------------------------- | 20 | - | - | 144 | 224 | - | 6 | - | - | 8 | 18 | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCAC------------------------------------------- | 18 | - | - | 87 | 129 | - | - | 2 | 1 | 3 | 3 | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACT------------------------------------------ | 19 | - | 2 | 80 | 110 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTCAGT-------------------------------------- | 23 | - | - | 61 | 80 | - | - | 1 | 1 | - | 1 | |
| --------------------------------------------TCAGTAACAAAGATTCAT--------------------------------------------------------------------------------- | 18 | - | - | 49 | 89 | - | - | - | 2 | 1 | 2 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCTTGT--------------------------------------------------------------------------- | 23 | - | 1 | 45 | 61 | - | - | - | - | 2 | 5 | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTC----------------------------------------- | 20 | - | - | 42 | 61 | 1 | - | - | - | 1 | 1 | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTCAG--------------------------------------- | 22 | - | 1 | 43 | 53 | - | - | - | - | 2 | 5 | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACTCAGT-------------------------------------- | 22 | - | - | 52 | 43 | - | - | - | - | - | 1 | |
| ---------------------------------------------CAGTAACAAAGATTCATCC------------------------------------------------------------------------------- | 19 | - | - | 32 | 53 | - | - | - | - | 2 | 4 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCT------------------------------------------------------------------------------ | 20 | 1 | - | 35 | 43 | - | - | - | 3 | - | 1 | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTCA---------------------------------------- | 21 | - | - | 37 | 40 | - | - | - | - | 1 | 1 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCTTG---------------------------------------------------------------------------- | 22 | - | - | 28 | 39 | - | 1 | 2 | 3 | 2 | 3 | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACT------------------------------------------ | 18 | - | - | 22 | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------------CAGTAACAAAGATTCATC-------------------------------------------------------------------------------- | 18 | - | - | 17 | 13 | - | - | - | - | 1 | 3 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCTT----------------------------------------------------------------------------- | 21 | - | - | 13 | 17 | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACTC----------------------------------------- | 19 | - | - | 15 | 16 | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACTCA---------------------------------------- | 20 | - | - | 9 | 15 | 1 | - | - | - | 1 | 1 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCTTGTGTC------------------------------------------------------------------------ | 26 | - | - | 11 | 9 | - | - | - | - | 1 | 1 | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACTCAG--------------------------------------- | 21 | - | - | 6 | 5 | - | - | - | 1 | - | - | |
| -------------------------------------------GTCAGTAACAAAGATTCATCCT------------------------------------------------------------------------------ | 22 | - | - | - | 6 | - | - | - | - | 2 | 3 | |
| -----------------------------------------------------------------------------------CGGAGAGTCTTTGTCACTCAGTGT------------------------------------ | 24 | - | - | - | 3 | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTCAGTG------------------------------------- | 24 | - | - | 2 | 2 | - | - | - | - | - | 1 | |
| ---------------------------------------------CAGTAACAAAGATTCATCCTTGTG-------------------------------------------------------------------------- | 24 | - | - | 1 | 2 | - | - | - | - | - | 1 | |
| -------------------------------------------GTCAGTAACAAAGATTCA---------------------------------------------------------------------------------- | 18 | - | - | 3 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------ACGGAGAGTCTTTGTCACTCAGTGT------------------------------------ | 25 | - | - | - | 2 | - | - | - | - | - | - | |
| -------------------------------------------GTCAGTAACAAAGATTCATCCTT----------------------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | - | - | - | 1 | |
| -------------------------------------------GTCAGTAACAAAGATTCATCC------------------------------------------------------------------------------- | 21 | - | - | 2 | - | - | - | - | - | - | - | |
| -----------------------------------------------GTAACAAAGATTCATCCT------------------------------------------------------------------------------ | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------AGTAACAAAGATTCATCCT------------------------------------------------------------------------------ | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------GTCAGTAACAAAGATTCAT--------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | --------------CGTGGCCAC----AGTCCTATTATTTGCAGTCAGTAACAAAGATTCATCCTTGTGTCGATCATACAGCACGGAGAGTCTTTGTCACTCAGTGTAATTAATAGCCTTCACCTCGC--------------- | |||||||||||
| human | TTCCCAGCCTGACTCTTGGTCACCACTCGTTCTGTTATTTGCAGTCAGTAACAAAGATTCATCCTTGTGTCCATCATGCAACAAGGAGAATCTTTGTCACTTAGTGTAATTAATAG-CTGGACCTTGCAAAGGAAGGTGGGAG | |||||||||||
| mouse | -------------------------------CTATTATTTGCAATCAGTAACAAAGATTCATCCTTGTGTCAATCATACAACACGGAGAGTCTTTGTCACTCAGTGTAATTAATAG--------------------------- | |||||||||||
| ** ********* *************************** ***** ** ** ***** *********** ************** | ||||||||||||
| ..... ......... .>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.... ..... | ENSRNOT00000062129 ENSRNOG00000040376 | |||||||||||
| rat | ((.((.... ((..((((((.(((((...(((.((((((((((.(((((((((.....))))))...))))))))))))).)))...))))).)))))).))...)).)). | 0.990 -31.50 | ||||||||||
| human | .(((((.(((..((...((((..........((((((.(((((...(((.((((((((((.(((((((((.......))).)))))))))))))))).)))...))))).)))))) ...))))......))..)))))))). | 0.803 -50.12 | ||||||||||
| mouse | ((((((.(((((...(((.((((((((((.(((((((((.....))))))...))))))))))))).)))...))))).)))))) | 1.000 -29.70 | ||||||||||
| rat | chromosome:11:33538456:33538565:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062129|ENSRNOG00000040376 ## ENSRNOG00000040376|miRNA|| |
| human | chromosome:21:36014855:36014996:1 | Same_strand|Boundary_non-coding|ENST00000390235|ENSG00000211590|miRNA|hsa-mir-802 [Source:miRBase;Acc:MI0003906] ## {MIR: hsa-mir-802} |
| mouse | chromosome:16:93369969:93370053:1 | Same_strand|Exonic_non-coding|ENSMUST00000103258|ENSMUSG00000076457|miRNA|mmu-mir-802 [Source:miRBase;Acc:MI0004249] ## {MIR: mmu-mir-802} |
mmu-mir-293
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-293 5arm | 1 | 7 | 1 | 14 | 0 | 2 | 0 | 1 | 2 | 13 |
| mmu-mir-293 3arm | 2 | 12 | 9 | 4 | 10 | 2 | 0 | 2 | 5 | 7 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-293 5arm | 0.000 | 0.000 | 0.000 | 0.001 | 0 | 0.000 | 0 | 0.000 | 0.000 | 0.001 |
| mmu-mir-293 3arm | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
sblock503 (miRBaseHomolog mmu-mir-293) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-293 | 0.001 | no | no | 0.38/0.53 | 18/22/0.52 | 0.0 0.0 | 1.8 1.1 | 35 42 | 0 0 | 8 9 | 0 0 | 28 26 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.10 0.14 | 1 1 | 94 | 9 | 2 | 2 |
| Located in cluster 2: hsa-mir-372, mmu-mir-294, mmu-mir-293, mmu-mir-291b, rno-mir-292, rno-mir-291a, rno-mir-290 |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------GUGCCGC---------------------------------------- | 52 | novel | ||||||||
| seed | -----------------------------CUCAAAC---------------------------------------------------------------------------- | 41 | miR-292 | ||||||||
| seed | ----------------------------------------------------------------AGUGCCG----------------------------------------- | 1 | miR-292 | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------AGTGCCGCAAAGTTTGCAG----------------------------- | 19 | - | 5 | 4 | 2 | 4 | 1 | 1 | 2 | 4 | |
| ----------------------------ACTCAAACTGTGTGACACTTT--------------------------------------------------------------- | 21 | 1 | 2 | - | 5 | - | 2 | 1 | - | 3 | |
| ----------------------------------------------------------------AGTGCCGCAAAGTTTGCAGTGT-------------------------- | 22 | - | 5 | 3 | - | 2 | - | - | 1 | 1 | |
| ----------------------------ACTCAAACTGTGTGACACTT---------------------------------------------------------------- | 20 | - | 3 | - | 6 | - | - | - | 1 | 2 | |
| ----------------------------------------------------------------AGTGCCGCAAAGTTTGCAGTG--------------------------- | 21 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | - | |
| ----------------------------ACTCAAACTGTGTGACAC------------------------------------------------------------------ | 18 | - | 2 | - | 1 | - | - | - | - | 6 | |
| ----------------------------ACTCAAACTGTGTGACACT----------------------------------------------------------------- | 19 | - | - | 1 | 2 | - | - | - | 1 | 2 | |
| ----------------------------------------------------------------AGTGCCGCAAAGTTTGCA------------------------------ | 18 | - | 1 | - | - | 3 | - | - | - | 2 | |
| ---------------------------------------------------------------AAGTGCCGCAAAGTTTGC------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| rat | CTTATTTGCAAGTGTTTCCACCTGTGATACTCAAACTGTGTGACACTTTGTTTCTTTTGGAAGAAGTGCCGCAAAGTTTGCAGTGTTACCGATGGAGAAAACTGCAGTTAGG | ||||||||||
| mouse | ---------------TTCAATCTGTGGTACTCAAACTGTGTGACATTTTGTT--CTTTGTAAGAAGTGCCGCAGAGTTTGTAGTGTTGCCGATTGAG-AAACTG-------- | ||||||||||
| *** * ***** ****************** ****** **** ************* ****** ****** ***** *** ****** | |||||||||||
| ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................... | ENSRNOT00000062153 ENSRNOG00000040400 | ||||||||||
| rat | ((((.(((((....((((((...((((((((((((((.((((.((((((.((((....)))))))))).)))).)))))).))))))))...))))))....))))).)))) | 1.000 -42.30 | |||||||||
| mouse | (((((((.((..((((((((((.((((.((((((... ........)))))).)))).)))))).))))..)).))))))) ...... | 1.000 -31.70 | |||||||||
| rat | chromosome:1:64273309:64273420:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000062153|ENSRNOG00000040400 ## ENSRNOG00000040400|miRNA|| |
| mouse | chromosome:7:3220344:3220429:1 | Same_strand|Boundary_non-coding|ENSMUST00000104841|ENSMUSG00000078035|miRNA|mmu-mir-293 [Source:miRBase;Acc:MI0000391] ## {MIR: mmu-mir-293} |
hsa-mir-202
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-202 5arm | 22 | 9 | 1 | 2 | 4 | 5 | 0 | 3 | 95 | 3 |
| hsa-mir-202 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-202 5arm | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.006 | 0.000 |
| hsa-mir-202 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
sblock899 (miRBaseHomolog hsa-mir-202) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-202 | 0.001 | no | no | 0.28/0.50 | 18/23/0.43 | 0.0 0.0 | 0.4 0.5 | 68 2 | 0 0 | 9 1 | 0 0 | 32 27 | 7 6 | 5arm 3arm | 1 1 | 39 3 | 0.05 0.10 | 1 2 | 146 | 9 | 1 | 1 |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------UCCUAUG-------------------------------------------------------------------------------------------- | 132 | novel | ||||||||
| seed | --------------------------------------------UUCCUAU--------------------------------------------------------------------------------------------- | 7 | novel | ||||||||
| seed | ----------------------------------------------CCUAUGC------------------------------------------------------------------------------------------- | 5 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------GAGGUAU-------------------------------------------------------- | 2 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------TTCCTATGCATATACTTCT--------------------------------------------------------------------------------- | 19 | 7 | 3 | - | 1 | 1 | 1 | 3 | 39 | 2 | |
| --------------------------------------------TTCCTATGCATATACTTCTTT------------------------------------------------------------------------------- | 21 | 6 | 2 | - | 1 | 3 | 2 | - | 11 | - | |
| --------------------------------------------TTCCTATGCATATACTTCTT-------------------------------------------------------------------------------- | 20 | 5 | 1 | - | - | - | 1 | - | 15 | - | |
| --------------------------------------------TTCCTATGCATATACTTC---------------------------------------------------------------------------------- | 18 | 1 | 3 | - | - | - | - | - | 14 | 1 | |
| --------------------------------------------TTCCTATGCATATACTTCTTTG------------------------------------------------------------------------------ | 22 | 1 | - | - | - | - | - | - | 6 | - | |
| ---------------------------------------------TCCTATGCATATACTTCT--------------------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | 2 | - | |
| -------------------------------------------TTTCCTATGCATATACTTC---------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | 1 | - | |
| ---------------------------------------------TCCTATGCATATACTTCTTT------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------TTTCCTATGCATATACTTCTT-------------------------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------TTTCCTATGCATATACTT----------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------TTCCTATGCATATACTTCTTTGT----------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------AGAGGTATAGCGCATGGGAA-------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------TTTCCTATGCATATACTTCT--------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------AGAGGTATAGCGCATGGGAAA------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| rat | -------ATGGCCTGCACATTC-----TCGCTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAAATGGAGCAGTGAGATCTTCCCCACCCA---------------- | ||||||||||
| human | GTGCTGAAGAGCCGGCCCGCCTCAGAGCCGCCCGCCGTTCCTTTTTCCTATGCATATACTTCTTTGAGGATCTGGCCTAAAGAGGTATAGGGCATGGGAAAACGGGGCGGTCGGGTCCTCCCCAGCGGCACCTGCACCAGTGC- | ||||||||||
| mouse | ------------------------------CTGGCTGTTCCTTTTTCCTATGCATATACTTCTTTGTGGATCTGGTCTAAAGAGGTATAGCGCATGGGAAGATGGAGCAGTGAGATCTTCCCCACCCAAACAAAGTCATTAGCA | ||||||||||
| * ** ****************************** ******** ************** ********* * ** ** ** * ** ****** * | |||||||||||
| >>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000054883 ENSRNOG00000036648 LOC681930 | ||||||||||
| ..... ...>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.. ..... | ENSRNOT00000053676 ENSRNOG00000035553 | ||||||||||
| rat | .(((.........(( ((....((((((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).))))))))))))..........))) | 0.920 -46.31 | |||||||||
| human | ((((((....((.((.((((....(((..((((((((..((.(((((((((((.(((((((((((.(((......))))))))))))))..))))))))))).))..))).))))).)))....))))..)).))..)))))) | 0.974 -72.10 | |||||||||
| mouse | ((.((((((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))))).)).............................. | 0.807 -45.70 | |||||||||
| rat | chromosome:1:199758111:199758226:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053676|ENSRNOG00000035553 ## Same_strand|Boundary_non-coding|ENSRNOT00000054883|ENSRNOG00000036648 ## ENSRNOG00000036648|protein_coding|LOC681930| ## ENSRNOG00000035553|miRNA|| |
| human | chromosome:10:134910990:134911132:-1 | Same_strand|Boundary_non-coding|ENST00000362219|ENSG00000199089|miRNA|hsa-mir-202 [Source:miRBase;Acc:MI0003130] ## {Repeats: trf 0 class=trf} ## {MIR: hsa-mir-202} |
| mouse | chromosome:7:147143552:147143665:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083568|ENSMUSG00000065502|miRNA|mmu-mir-202 [Source:miRBase;Acc:MI0000245] ## {MIR: mmu-mir-202} |
miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK (3 loci)
hsa-mir-1251
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-1251 5arm | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-1251 3arm | 14 | 15 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-1251 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-1251 3arm | 0.000 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock10789 (miRBaseHomolog hsa-mir-1251) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-1251 | 0.001 | no | no | 0.56/0.61 | 18/23/0.73 | 0.0 1.0 | 0.0 0.8 | 4 23 | 0 0 | 2 2 | 0 0 | 20 22 | 7 6 | 5arm 3arm | 1 1 | nd nd | 0.28 0.29 | 3 3 | 33 | 2 | -3 | 2 |
| Member of family novel180 (seed CUCUAGC): hsa-mir-1251, block271332_cand |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------GCGCUUU--------------------------------------------------- | 15 | novel | |
| seed | ------------------------------------------------------------------------GCUUUGC------------------------------------------------- | 13 | novel | |
| seed | ----------------------------------CUCUAGC--------------------------------------------------------------------------------------- | 4 | novel | |
| seed | -----------------------------------------------------------------------CGCUUUG-------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------------------------------------CGCTTTGCTCAGCCAGTGTAG------------------------------------ | 21 | 7 | 4 | |
| ---------------------------------------------------------------------AGCGCTTTGCTCAGCCAGTGT-------------------------------------- | 21 | 4 | 5 | |
| ---------------------------------ACTCTAGCTGCCAAAGGC----------------------------------------------------------------------------- | 18 | 1 | 3 | |
| ---------------------------------------------------------------------AGCGCTTTGCTCAGCCAGTGTAG------------------------------------ | 23 | - | 3 | |
| ---------------------------------------------------------------------AGCGCTTTGCTCAGCCAGT---------------------------------------- | 19 | 1 | 1 | |
| -----------------------------------------------------------------------CGCTTTGCTCAGCCAGTGT-------------------------------------- | 19 | 1 | 1 | |
| ----------------------------------------------------------------------GCGCTTTGCTCAGCCAGTGTAG------------------------------------ | 22 | 1 | - | |
| ---------------------------------------------------------------------AGCGCTTTGCTCAGCCAG----------------------------------------- | 18 | - | 1 | |
| rat | -------------TCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACAATGGA-------------- | |||
| human | CTCCACCCGAGCGTCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACAATGGAACTTCTCCCTTGAG | |||
| mouse | ----------CCATCCATGGGTCAGCTATGTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGCCTGATAAACACTGGA-------------- | |||
| ************************************************************************************************ **** | ||||
| ..... ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... ..... | ENSRNOT00000063203 ENSRNOG00000041450 | |||
| rat | ((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).)))) | 1.000 -39.70 | ||
| human | (((.....(((..((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).))))....)))....))) | 0.975 -43.70 | ||
| mouse | ...((((((.(((((((((((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..))))))).))))...)).)))) | 1.000 -40.00 | ||
| rat | chromosome:7:29141757:29141857:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063203|ENSRNOG00000041450 ## ENSRNOG00000041450|miRNA|| |
| human | chromosome:12:96409789:96409916:1 | Same_strand|Boundary_non-coding|ENST00000408552|ENSG00000221479|miRNA|hsa-mir-1251 [Source:miRBase;Acc:MI0006386] ## {MIR: hsa-mir-1251} |
| mouse | chromosome:10:91599875:91599978:-1 | Same_strand|Boundary_non-coding|ENSMUST00000116882|ENSMUSG00000080532|miRNA| |
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