candidate homolog loci of miRBase miRNAs
miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK (3 loci)
mmu-mir-294
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-294 5arm | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| mmu-mir-294 3arm | 0 | 4 | 5.333 | 5.333 | 3 | 4 | 0 | 1.333 | 1 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-294 5arm | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 |
| mmu-mir-294 3arm | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
sblock502 (miRBaseHomolog mmu-mir-294) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-294 | 0.001 | no | no | 0.33/0.53 | 18/22/0.83 | 0.0 0.1 | 0.5 1.5 | 2 28 | 0 0 | 2 8 | 0 0 | 29 30 | 7 5 | 5arm 3arm | 1 3 | nd nd | 0.15 0.14 | 1 1 | 30 | 8 | 0 | 3 |
| Located in cluster 2: hsa-mir-372, mmu-mir-294, mmu-mir-293, mmu-mir-291b, rno-mir-292, rno-mir-291a, rno-mir-290 |
| Member of family miR-291a (seed AAGUGCU): mmu-mir-295, hsa-mir-372, mmu-mir-294, rno-mir-291a |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------------------------AAGUGCU--------------------------------------------- | 26 | miR-291a | |||||||
| seed | -------------------------------------------------------------------AGUGCUU-------------------------------------------- | 2 | novel | |||||||
| seed | ------------------------------CUCAAAA--------------------------------------------------------------------------------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------AAAGTGCTTCCATTTTGTGTGT------------------------------- | 22 | 2 | 3 | 2 | 1 | 3 | - | - | 1 | |
| -----------------------------------------------------------------AAAGTGCTTCCATTTTGTGTG-------------------------------- | 21 | 1 | 1 | - | 2 | 1 | 1 | - | - | |
| -----------------------------------------------------------------AAAGTGCTTCCATTTTGTGT--------------------------------- | 20 | 1 | - | 3 | - | - | - | - | - | |
| -----------------------------------------------------------------AAAGTGCTTCCATTTTGT----------------------------------- | 18 | - | 1 | 1 | - | - | 1 | - | - | |
| -----------------------------GCTCAAAATGGAGGCCCTAT--------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------AAGTGCTTCCATTTTGTGTGT------------------------------- | 21 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------AAAGTGCTTCCATTTTGTG---------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------------AAGTGCTTCCATTTTGTGTGTT------------------------------ | 22 | - | - | - | - | - | - | 1 | - | |
| -----------------------------GCTCAAAATGGAGGCCCTA---------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | |
| rat | GAGGATCTTGGAAAAACCACCATAGCCATGCTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTAGAAAGTGCTTCCATTTTGTGTGTTGCTGTGTGGAAGAAGGCATCCGGGACTTCA | |||||||||
| mouse | --------------------------CATACTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTGGAAAGTGCTTCCCTTTTGTGTGTT------------------------------ | |||||||||
| *** ********************************* ************ *********** | ||||||||||
| .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................... | ENSRNOT00000062163 ENSRNOG00000040410 | |||||||||
| rat | ((((.(((((((....(((.((((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))).)))).))))))))).........))))))))))). | 1.000 -47.62 | ||||||||
| mouse | .((((.(((((.((((((.((.(((..(((....)))))).)).)))))).))))).)))). | 1.000 -20.20 | ||||||||
| rat | chromosome:1:64272941:64273058:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000062163|ENSRNOG00000040410 ## ENSRNOG00000040410|miRNA|| |
| mouse | chromosome:7:3220607:3220764:1 | Same_strand|Boundary_non-coding|ENSMUST00000104710|ENSMUSG00000077903|miRNA|mmu-mir-294 [Source:miRBase;Acc:MI0000392] ## {MIR: mmu-mir-294} |
hsa-mir-876
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-876 5arm | 9 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-876 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-876 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-876 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock9304 (miRBaseHomolog hsa-mir-876) [miRBaseHomolog_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-876 | 0.001 | no | no | 0.35/0.43 | 18/23/0.88 | 0.0 0.0 | 0.2 0.0 | 12 1 | 0 0 | 2 1 | 0 0 | 26 20 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.18 0.21 | 2 2 | 17 | 2 | 2 | -1 |
| reads | miRBase family seed | |||
| seed | ---------------------------GGAUUUC------------------------------------------------------------------------ | 15 | novel | |
| seed | ------------------------------UUUCUCU--------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------UGGUUUG------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------TGGATTTCTCTGTGAATCACCA---------------------------------------------------------- | 22 | 5 | 5 | |
| --------------------------TGGATTTCTCTGTGAATCACC----------------------------------------------------------- | 21 | 1 | 2 | |
| --------------------------TGGATTTCTCTGTGAATCACCAT--------------------------------------------------------- | 23 | 1 | - | |
| -----------------------------ATTTCTCTGTGAATCACCATATC------------------------------------------------------ | 23 | 1 | - | |
| --------------------------TGGATTTCTCTGTGAATC-------------------------------------------------------------- | 18 | 1 | - | |
| -------------------------------------------------------------------GTGGTTTGCAAAGTAATTC-------------------- | 19 | 1 | - | |
| rat | AGCATTACATAAACTGTCAAGTGCTGTGGATTTCTCTGTGAATCACCATATCAAATCTAATGTGGTGGTGGTTTGCAAAGTAATTCATAGTGCTTCATAGATGCTC | |||
| human | --------------------------TGGATTTCTTTGTGAATCACCATATCTAAGCTAATGTGGTGGTGGTTTACAAAGTAATTCA------------------- | |||
| mouse | -------------CTGTCACGTGCTATGGATTTCTCTGTGAATCACTATATCAAATCTAGTGTGGTAGTGGTTTACAAAGTAATTCATAGTGCTTCACAG------ | |||
| ********* ********** ***** ** *** ****** ******* ************ | ||||
| .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. | ENSRNOT00000063073 ENSRNOG00000041320 | |||
| rat | (((((........((((.(((..(((((((((.((.((..(((((((((..((.......))..)))))))))..)).)).)))))))))..))).))))))))). | 0.970 -40.00 | ||
| human | .(((((.((((((((((((((((......((....)).)))))))))))))))).))))). | 1.000 -25.80 | ||
| mouse | ((((...((((((((((((.((.(((((((((((((..((.......))..))))))))))))).)).))))))))))))...)))) | 1.000 -33.20 | ||
| rat | chromosome:5:53434868:53434973:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063073|ENSRNOG00000041320 ## ENSRNOG00000041320|miRNA|| |
| human | chromosome:9:28853595:28853740:-1 | Same_strand|Boundary_non-coding|ENST00000401147|ENSG00000215966|miRNA|hsa-mir-876 [Source:miRBase;Acc:MI0005542] ## {MIR: hsa-mir-876} |
| mouse | chromosome:4:36592403:36592489:-1 | Same_strand|Boundary_non-coding|ENSMUST00000098151|ENSMUSG00000045083|protein_coding|leucine rich repeat and Ig domain containing 2 Gene [Source:MGI (curated);Acc:Lingo2-001] ## Same_strand|Intronic_non-coding|ENSMUST00000108122|ENSMUSG00000045083|protein_coding|leucine rich repeat and Ig domain containing 2 Gene [Source:MGI (curated);Acc:Lingo2-001] ## {MIR: mmu-mir-876} |
miRBaseHomolog_randfoldOK (3 loci)
mmu-mir-1903
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1903 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1903 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block822138 (miRBaseHomolog mmu-mir-1903) [miRBaseHomolog_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-1903 | 0.001 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 20 | 3arm | 1 | nd | 0.20 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------ACAAGUG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| --------------------------------------------------------------------------------------AACAAGTGTGGGAAAAGGGA-------------------------------- | 20 | 1 | |
| rat | --------------CTCCTCCCCTC-TTTTTTTCCTCCTTCTTCTTCTTCCTGAGACATGGCCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAATCGGAG------------------- | ||
| mouse | CCTCCTCCTCGCAACTCCTCCCCTCTTTTTTTTCCTCCTTCTTCTTCTTCCTGAGACATGGCCCGGGCAGTGGCTCCTGGAAGAGGAACAAGTGTGGGAAAAGGGAGAGGAAATCGGAGCTAAATGACAGGATGCAGG | ||
| *********** ********************************************************************************************* | |||
| >>>>> >>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> | ENSRNOT00000014492 ENSRNOG00000010744 Nrp1 | ||
| ..... ........... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............. ..... | ENSRNOT00000063540 ENSRNOG00000041787 | ||
| rat | (((((((.((( (((((((((..(((.((((((((((.(((.(((.((....)).))).)))..)))))))))).)))...)))))))))))).)))....)))) | 1.000 -48.30 | |
| mouse | (((..((((..((....(((((((((((((((((((.(((.((((((((((.(((.(((.((....)).))).)))..)))))))))).)))...))))))))))))))).....)))).....))..))))...))) | 0.847 -54.30 |
| rat | chromosome:19:58333949:58334052:1 | Same_strand|Exonic_non-coding|ENSRNOT00000014492|ENSRNOG00000010744 ## ENSRNOG00000041787|miRNA|| ## ENSRNOG00000010744|protein_coding|Nrp1|Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q9QWJ9] |
| mouse | chromosome:8:130883115:130883252:1 | Same_strand|Boundary_non-coding|ENSMUST00000122574|ENSMUSG00000084523|miRNA|mmu-mir-1903 [Source:miRBase;Acc:MI0008317] ## {Repeats: CT-rich 1 class=Low_complexity,dust 0 class=dust} ## {MIR: mmu-mir-1903} |
mmu-mir-668
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-668 5arm | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-668 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block2066481 (miRBaseHomolog mmu-mir-668) [miRBaseHomolog_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-668 | 0.001 | no | no | 0.60/0.64 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 7 | 10 2 | 5arm 5arm | 1 1 | nd nd | 0.15 0.09 | 1 1 | 2 | 1 | na | na |
| Located in cluster 74: rno-mir-382, rno-mir-134, mmu-mir-668, rno-mir-485 |
| reads | miRBase family seed | ||
| seed | --UAAGUGU---------------------------------------------------------- | 1 | novel |
| seed | --------UGCCUCG---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -GTAAGTGTGCCTCGGGTGAG---------------------------------------------- | 20 | 1 | |
| -------GTGCCTCGGGTGAGCATGCACT-------------------------------------- | 22 | 1 | |
| rat | GGTAAGTGTGCCTCGGGTGAGCATGCACTTAACGTAGGTGTATGTCACTCGGCTCGGCCCACTACCC | ||
| mouse | -GTAAGTGTGCCTCGGGTGAGCATGCACTTAATGTAGGTGTATGTCACTCGGCTCGGCCCACTAC-- | ||
| ******************************* ******************************** | |||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>...... | ENSRNOT00000062113 ENSRNOG00000040360 | ||
| rat | (((.((((.(((((((((((.((((((((((...))))))))))))))))))...))).))))))). | 1.000 -34.10 | |
| mouse | ...((((.(((((((((((.((((((((((...))))))))))))))))))...))).)))).. | 1.000 -30.80 |
| rat | chromosome:6:134416226:134416292:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062113|ENSRNOG00000040360 ## ENSRNOG00000040360|miRNA|| |
| mouse | chromosome:12:110972922:110973028:1 | Same_strand|Boundary_non-coding|ENSMUST00000102395|ENSMUSG00000076350|miRNA|mmu-mir-668 [Source:miRBase;Acc:MI0004134] ## {MIR: mmu-mir-668} |
mmu-mir-466b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-466b 5arm | 0 | 0 | 0 | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-466b 5arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
block630476 (miRBaseHomolog mmu-mir-466b-8) [miRBaseHomolog_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-466b-8 | 0.001 | no | no | 0.32/0.32 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 7 | 5arm | 2 | nd | 0.14 | 3 | 1 | 1 | na | na |
| Member of family miR-466b (seed AUGUGUG): mmu-mir-466b, rno-mir-466b, rno-mir-466b, rno-mir-466b-2, rno-mir-466b-1 |
| reads | miRBase family seed | ||
| seed | ---------------------UGUGUGU------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| --------------------ATGTGTGTGTATGTTCTTTTGT----------------------------------------------------------------------- | 22 | 1 | |
| rat | --TGTGCA---TATGACTATATGTGTGTGTATGTTCTTTTGTGTATATGAATATACATATACATAAACACATACACACA-CAAACAAGAACACTCACAC-------------- | ||
| human | --TAAAAAAAGTACAAAATTGTGTGTGTGTATGTTCGTTTGTAAATATATGTACACACATACACATATAGATATACACACCACATAGACACACACTCATTCACTTTATTTTTA | ||
| mouse | TGTGTGTA---TGTGTTGATGTGTGTGTACATGTACATGTGTGAATATG-ATATACATATACATACACGCACACATAAGACACATATGAGCACACAGAC-------------- | ||
| * * * * ******* **** * * *** **** ** *** ***** * * * * * * ** * * *** * * | |||
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ +++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | ||
| rat | ((((.. ..........(((((((((((((...((((((((((((......)))))))))))).))))))))))) ))............)))). | 0.870 -33.15 | |
| human | .....(((((........((((((((.(((((..((.((((..(((((((..........)))))))....)))).)).))))).))))))))......)))))....... | 0.998 -27.94 | |
| mouse | (((((((( ((((((.((((((((((..(((((.(((((((...... .))))))).)))))..))))))))))..)))))))....)))))))... | 0.996 -39.50 |
| rat | chromosome:17:79266511:79266603:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] |
| human | chromosome:2:217418906:217419016:1 | intergenic ## {Repeats: dust 0 class=dust} |
| mouse | chromosome:2:10422736:10422830:1 | Same_strand|Boundary_non-coding|ENSMUST00000114864|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## Same_strand|Intronic_coding|ENSMUST00000041105|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: dust 0 class=dust,(TATATG)n 1 class=Simple_repeat,trf 0 class=trf} ## {MIR: mmu-mir-466b-8} |
miRBaseHomolog_lenNOK_cloningOK_randfoldOK (2 loci)
hsa-mir-147b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-147b 5arm | 0 | 0.500 | 0 | 1 | 0.500 | 4.500 | 0 | 0.500 | 1 | 1.500 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-147b 5arm | 0 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
block3193144 (miRBaseHomolog hsa-mir-147b) [miRBaseHomolog_lenNOK_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-147b | 0.001 | no | no | 0.42/0.48 | 18/22/0.47 | 0.2 | 0.9 | 11 | 0 | 7 | 0 | 13 | 3 | 5arm | 2 | nd | 0.24 | 2 | 19 | 7 | na | na |
| Member of family novel78 (seed UGGAAAC): hsa-mir-147b, sblock12415_novel |
| reads | miRBase family seed | ||||||||
| seed | --------------------------GGAAACA--------------------------------------------------------------- | 16 | novel | ||||||
| seed | -------------------------UGGAAAC---------------------------------------------------------------- | 2 | novel | ||||||
| seed | ----------------------UAGUGGA------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------------TGGAAACACTTCTGCACAAAC-------------------------------------------------- | 21 | - | 1 | - | 4 | - | - | 1 | |
| -------------------------TGGAAACACTTCTGCACA----------------------------------------------------- | 18 | 1 | 1 | 1 | 1 | 1 | - | - | |
| -------------------------TGGAAACACTTCTGCACAA---------------------------------------------------- | 19 | - | - | - | 3 | - | - | 2 | |
| ------------------------GTGGAAACACTTCTGCACAAAC-------------------------------------------------- | 22 | - | - | - | - | - | 2 | - | |
| ---------------------CTAGTGGAAACACTTCTGCAC------------------------------------------------------ | 21 | - | - | - | 1 | - | - | - | |
| rat | -----------CTCTATGAATCTAGTGGAAACACTTCTGCACAAACTGGATTTT-GATGCCAGTGTGCAGAAATGCTTCTGCTACATTCTTAGGGC | ||||||||
| human | ----------ACTCTATAAATCTAGTGGAAACATTTCTGCACAAACTAGATTCTGGACACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGT | ||||||||
| mouse | TCCAAAGAACACTCTATGAATCTAGTGGAAACATTTCTGCACAAACTAGATGTT-GATGCCAGTGTGCGGAAATGCTTCTGCTACATTTGTAGGGT | ||||||||
| ****** *************** ************* *** * ** ********* ******************* ***** | |||||||||
| ..... ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....... | ENSRNOT00000054657 ENSRNOG00000036553 | ||||||||
| rat | (((((.((((.(((..(((.((.((((((((..(((((..... ....))))))))))))).)).)))..))).)))).))))). | 1.000 -35.90 | |||||||
| human | ((((((.((((.(((..(((.((((((((((((.........((((...)))))))))))))))).)))..))).)))).)))))) | 0.997 -35.60 | |||||||
| mouse | ..........((((((..(((.(((..(((.(((((((((((((((.....))) ........)))))))))))).)))..))).)))..)))))) | 0.930 -36.30 | |||||||
| rat | chromosome:X:158880427:158880510:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054657|ENSRNOG00000036553 ## ENSRNOG00000036553|miRNA|| |
| human | chromosome:15:43512536:43512621:1 | Same_strand|Intronic_non-coding|ENST00000396655|ENSG00000171763|protein_coding|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand|Boundary_non-coding|ENST00000305560|ENSG00000171763|protein_coding|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand|Exonic_non-coding|ENST00000344300|ENSG00000166920|protein_coding|Normal mucosa of esophagus-specific gene 1 protein (Protein FOAP-11) [Source:UniProtKB/Swiss-Prot;Acc:Q9C002] ## {MIR: hsa-mir-147b} |
| mouse | chromosome:2:122466525:122466619:1 | Same_strand|Exonic_non-coding|ENSMUST00000110512|ENSMUSG00000033213|protein_coding|Normal mucosa of esophagus-specific gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q810Q5] ## Same_strand|Boundary_non-coding|ENSMUST00000102354|ENSMUSG00000076309|miRNA|mmu-mir-147 [Source:miRBase;Acc:MI0005482] ## {MIR: mmu-mir-147} |
mmu-mir-466b-5-as
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-466b-5-as 5arm | 0.333 | 0 | 2 | 1.667 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-466b-5-as 5arm | 0.000 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 |
block630542 (Antisense miRBaseHomolog mmu-mir-466b-5-as) [miRBaseHomolog_lenNOK_cloningOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomologAS mmu-mir-466b-5-as | 0.001 | no | no | 0.45/0.53 | 19/22/0.33 | 0.7 | 1.3 | 12 | 0 | 3 | 0 | 23 | 3 | 5arm | 3 | nd | 0.14 | 1 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------UGUGCGU------------------------------------------------------------------------------ | 8 | miR-210 | ||
| seed | ------------------------------------------GUGUGCG------------------------------------------------------------------------------- | 4 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T2S2 | |||
| ------------------------------------------GTGTGCGTGTACAGGTGTA------------------------------------------------------------------- | 19 | - | 2 | 2 | |
| -----------------------------------------TGTGTGCGTGTACAGGTGT-------------------------------------------------------------------- | 19 | - | 2 | 2 | |
| ------------------------------------------GTGTGCGTGTACAGGTGTAT------------------------------------------------------------------ | 20 | 1 | - | 1 | |
| ------------------------------------------GTGTGCGTGTACAGGTGTATAT---------------------------------------------------------------- | 22 | - | 2 | - | |
| rat | ------------------TGTATTTACCTGTGTGTATGTTTTGTGTGCGTGTACAGGTGTATATATGGAGAAACATATACATATACACATGCACACACACG-CAACACACACACACACACACACACAA | ||||
| mouse | GAGTGCCATTCCCATGTGTCTGTGTGCTCATATGTGTCTTATGTGTGCGTGTATGTATATGTATAT-----CATATTCACACATGTACATGTACACACACATCAACACATACACATATTCATAGG--- | ||||
| * * * * * * *** * ** ************ * * ***** * ** *** ** ***** ******** ******* ***** * ** * | |||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | ||||
| rat | (((.......(((((((.(((.(((((((.((((.((.(((((((((((......))))))....))))).)).)))).)))) ))).))).))))))).......))). | 0.990 -39.24 | |||
| mouse | ...........((.((((..((((((....(((((((...(((((((.((((((((((((((.... .........)))))))))))))).)))))))..)))))))))))))..)))))) | 0.917 -40.72 | |||
| rat | chromosome:17:79278162:79278270:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] |
| mouse | chromosome:2:10410504:10410623:-1 | Opposite_strand|Boundary_non-coding|ENSMUST00000114864|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## Opposite_strand|Intronic_coding|ENSMUST00000041105|ENSMUSG00000061186|protein_coding|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TATATG)n -1 class=Simple_repeat,dust 0 class=dust,dust 0 class=dust} ## {ASMIR: mmu-mir-466b-5-as} |
miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK (1 loci)
mmu-mir-1224
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1224 5arm | 79 | 39.500 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-1224 3arm | 202.800 | 215.850 | 4 | 3 | 2 | 5 | 3 | 2.250 | 2.250 | 0.400 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-1224 5arm | 0.003 | 0.002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| mmu-mir-1224 3arm | 0.007 | 0.009 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
sblock3034 (miRBaseHomolog mmu-mir-1224) [miRBaseHomolog_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-1224 | 0.001 | no | no | 0.42/0.70 | 18/24/0.78 | 0.0 0.0 0.0 | 0.4 0.5 0.0 | 87 2 344 | 0 0 0 | 2 2 10 | 0 0 0 | 23 46 10 | 17 -5 22 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | 1 24 0 | 0.19 0.45 0.29 | 1 5 4 | 682 | 10 | 8 | 5 |
| Member of family novel173 (seed CCCACCU): mmu-mir-1224, block32237_cand |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------------------------CCCACCU----------------------- | 548 | novel | |||||||||
| seed | ------------------------UGAGGAC--------------------------------------------------------------------------------------- | 119 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------------CCACCUC---------------------- | 12 | novel | |||||||||
| seed | -----------------------------------------------AGUACCA---------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------GAGGACU-------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTCAG---------- | 21 | 166 | 178 | 3 | 3 | 1 | 5 | 2 | 2 | 2 | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCT------------- | 18 | 39 | 38 | - | - | - | - | - | - | - | 2 | |
| -----------------------GTGAGGACTGGGGAGGTGGA--------------------------------------------------------------------------- | 20 | 40 | 14 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTC------------ | 19 | 22 | 22 | - | - | - | - | - | 1 | 1 | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTCA----------- | 20 | 15 | 21 | - | - | 2 | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTGGAG-------------------------------------------------------------------------- | 21 | 17 | 16 | - | - | - | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTGG---------------------------------------------------------------------------- | 19 | 11 | 4 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTCAGG--------- | 22 | 6 | 5 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTCAGGT-------- | 23 | 4 | 4 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------CCCACCTCTTCTCTCCTCAG---------- | 20 | 4 | 4 | - | - | - | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTG----------------------------------------------------------------------------- | 18 | 6 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTGGAGG------------------------------------------------------------------------- | 22 | 2 | 4 | - | - | - | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTGGAGGGT----------------------------------------------------------------------- | 24 | 3 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------CCCACCTCTTCTCTCCTC------------ | 18 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------CCCCACCTCTTCTCTCCTCAGGTA------- | 24 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------GTGAGGACTGGGGAGGTGGAGGG------------------------------------------------------------------------ | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------TAGTACCATTAGAGCCAGA----------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------------------CCCACCTCTTCTCTCCTCA----------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------TGAGGACTGGGGAGGTGGA--------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------TAGTACCATTAGAGCCAGAG---------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | GCAGCCATGACTACCTGCCTTTGGTGAGGACTGGGGAGGTGGAGGGTAGTACCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAGGTACGACTGC | |||||||||||
| mouse | -----------------------GTGAGGACTGGGGAGGTGGAGGGTAGCATCATTAGAGCCAGAGCTCTGTCTCAGCTCCCTCTCCCCCCACCTCTTCTCTCCTCAG---------- | |||||||||||
| ************************** * ******************************************************** | ||||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> | ENSRNOT00000037612 ENSRNOG00000001707 RGD1564491_predicted | |||||||||||
| ............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... | ENSRNOT00000063288 ENSRNOG00000041535 | |||||||||||
| rat | ((((.......((((((.....((.(((((.(((((.((.((((((.(((.....((((((....)))))).....))))))))))))))))....))))).)).))))))...)))) | 0.910 -48.40 | ||||||||||
| mouse | .((((((..((((((((((((((.(((.....((((((....)))))).....)))))))......))))))))))..)))))). | 0.992 -43.20 | ||||||||||
| rat | chromosome:11:82536253:82536370:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000063288|ENSRNOG00000041535 ## Same_strand|Boundary_coding|ENSRNOT00000037612|ENSRNOG00000001707 ## Same_strand|Intronic_coding|ENSRNOT00000037612|ENSRNOG00000001707 ## Same_strand|Exonic_non-coding|ENSRNOT00000063288|ENSRNOG00000041535 ## ENSRNOG00000041535|miRNA|| ## ENSRNOG00000001707|protein_coding|RGD1564491_predicted| |
| mouse | chromosome:16:20604482:20604639:1 | Same_strand|Boundary_coding|ENSMUST00000046188|ENSMUSG00000033821|protein_coding| ## Same_strand|Boundary_non-coding|ENSMUST00000117019|ENSMUSG00000080669|miRNA|mmu-mir-1224 [Source:miRBase;Acc:MI0004118] ## {MIR: mmu-mir-1224} |
miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH (1 loci)
hsa-mir-216b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-216b 5arm | 28 | 3 | 0 | 0 | 32 | 111 | 0 | 0 | 0 | 0 |
| hsa-mir-216b 3arm | 0 | 2 | 0 | 0 | 4 | 8 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-216b 5arm | 0.001 | 0.000 | 0 | 0 | 0.002 | 0.008 | 0 | 0 | 0 | 0 |
| hsa-mir-216b 3arm | 0 | 0.000 | 0 | 0 | 0.000 | 0.001 | 0 | 0 | 0 | 0 |
sblock4322 (miRBaseHomolog hsa-mir-216b) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-216b | 0.001 | no | no | 0.33/0.43 | 18/23/0.80 | 0.0 0.9 | 1.0 0.9 | 127 14 | 0 0 | 4 3 | 0 0 | 19 20 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.18 0.30 | 4 6 | 188 | 4 | 2 | 3 |
| reads | miRBase family seed | |||||
| seed | ----------------------------AAUCUCU--------------------------------------------------------------------------- | 174 | novel | |||
| seed | ------------------------------------------------------------------CACACUU------------------------------------- | 7 | novel | |||
| seed | --------------------------------------------------------------------CACUUAC----------------------------------- | 4 | novel | |||
| seed | -------------------------------------------------------------------ACACUUA------------------------------------ | 2 | novel | |||
| seed | ---------------------------------------------------------------------ACUUACU---------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| ---------------------------AAATCTCTGCAGGCAAATGTGA------------------------------------------------------------- | 22 | 12 | 1 | 14 | 36 | |
| ---------------------------AAATCTCTGCAGGCAAATGT--------------------------------------------------------------- | 20 | 9 | 1 | 3 | 30 | |
| ---------------------------AAATCTCTGCAGGCAAATGTG-------------------------------------------------------------- | 21 | 3 | 1 | 10 | 19 | |
| ---------------------------AAATCTCTGCAGGCAAATG---------------------------------------------------------------- | 19 | 2 | - | 3 | 16 | |
| ---------------------------AAATCTCTGCAGGCAAAT----------------------------------------------------------------- | 18 | 2 | - | 2 | 10 | |
| -----------------------------------------------------------------ACACACTTACTTGTAGAGATTC----------------------- | 22 | - | - | 1 | 3 | |
| ------------------------------------------------------------------CACACTTACTTGTAGAGATTC----------------------- | 21 | - | - | - | 2 | |
| -------------------------------------------------------------------ACACTTACTTGTAGAGATTC----------------------- | 20 | - | - | - | 2 | |
| -----------------------------------------------------------------ACACACTTACTTGTAGAGA-------------------------- | 19 | - | - | 1 | - | |
| --------------------------------------------------------------------CACTTACTTGTAGAGATTC----------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------------ACACACTTACTTGTAGAGAT------------------------- | 20 | - | - | - | 1 | |
| -------------------------------------------------------------------ACACTTACTTGTAGAGATTCTTC-------------------- | 23 | - | 1 | - | - | |
| -------------------------------------------------------------------ACACTTACTTGTAGAGATTCT---------------------- | 21 | - | 1 | - | - | |
| -----------------------------------------------------------------ACACACTTACTTGTAGAG--------------------------- | 18 | - | - | 1 | - | |
| rat | --------TGCACGTTGGCAGACTGGGAAATCTCTGCAGGCAAATGTGATGTCACTGAAGAAATCACACACTTACTTGTAGAGATTCTTCAGTCTGACAACATCAAGCAT | |||||
| human | AGTACAACTTCAAAGTGGCAGACTGGAAAATCTCTGCAGGCAAATGTGATGTCACTGAGGAAATCACACACTTACCCGTAGAGATTCTACAGTCTGACATCTTCAAG--- | |||||
| mouse | --------TGCACATTGGCAGACTGGGAAATCTCTGCAGGCAAATGTGATGTCACTGAAGAAACCACACACTTACCTGTAGAGATTCTTCAGTCTGACAACATCAAGCA- | |||||
| * ** *********** ******************************* **** *********** *********** ********** * ***** | ||||||
| ..... ......>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............... | ENSRNOT00000054490 ENSRNOG00000036371 | |||||
| rat | .....((((.((((((((..((((((((((((....((((((.((......)).))))))......))))))))))))..)))))))).))))......... | 1.000 -42.20 | ||||
| human | .......(((.((..((.(((((((...(((((((((.((....((((((.((......)).))))))......)).)))))))))...))))))).))..)).))) | 0.983 -35.40 | ||||
| mouse | .((....((.((((((((..((((((((((((.((.((((...((......)).....)))).)).))))))))))))..))))))))....))....)). | 0.999 -39.50 | ||||
| rat | chromosome:14:109655043:109655144:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054490|ENSRNOG00000036371 ## ENSRNOG00000036371|miRNA|| |
| human | chromosome:2:56081345:56081451:-1 | Same_strand|Boundary_non-coding|ENST00000390186|ENSG00000211520|miRNA|hsa-mir-216b [Source:miRBase;Acc:MI0005569] ## {MIR: hsa-mir-216b} |
| mouse | chromosome:11:28646185:28646285:1 | Same_strand|Boundary_non-coding|ENSMUST00000102363|ENSMUSG00000076318|miRNA|mmu-mir-216b [Source:miRBase;Acc:MI0004126] ## {MIR: mmu-mir-216b} |
miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK (1 loci)
hsa-mir-18b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-18b 5arm | 6 | 5 | 0 | 4 | 43 | 27 | 2 | 4 | 4 | 3 |
| hsa-mir-18b 3arm | 2 | 1 | 0 | 1 | 17 | 25 | 0 | 4 | 3 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-18b 5arm | 0.000 | 0.000 | 0 | 0.000 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
| hsa-mir-18b 3arm | 0.000 | 0.000 | 0 | 0.000 | 0.001 | 0.002 | 0 | 0.000 | 0.000 | 0.000 |
sblock12718 (miRBaseHomolog hsa-mir-18b) [miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-18b | 0.123 | no | no | 0.40/0.58 | 18/24/0.24 | 0.0 0.0 0.8 | 0.0 0.4 2.1 | 1 65 35 | 0 0 0 | 1 9 8 | 0 0 0 | 2 26 24 | 25 2 14 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.40 0.16 0.40 | 5 1 3 | 153 | 9 | 1 | 2 |
| Located in cluster 86: rno-mir-363, rno-mir-92a, rno-mir-19b, rno-mir-20b, hsa-mir-18b, rno-mir-17 |
| Member of family miR-18a (seed AAGGUGC): hsa-mir-18b, rno-mir-18a |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------AAGGUGC------------------------------------------------------------------------------------------- | 95 | miR-18a | ||||||||
| seed | -------------------------------------------------------------------------------ACUGCCC--------------------------------------------------- | 30 | novel | ||||||||
| seed | --------------------------------------------------------------------------------CUGCCCU-------------------------------------------------- | 19 | novel | ||||||||
| seed | ----------------------------------------------------------------------------------GCCCUAA------------------------------------------------ | 6 | novel | ||||||||
| seed | ----------------------------------------AGGUGCA------------------------------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | ---------------UCCUUGU------------------------------------------------------------------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------TAAGGTGCATCTAGTGCT--------------------------------------------------------------------------------- | 18 | 1 | 5 | 2 | 29 | 13 | 2 | 3 | 3 | 1 | |
| --------------------------------------TAAGGTGCATCTAGTGCTG-------------------------------------------------------------------------------- | 19 | 4 | - | 2 | 11 | 12 | - | - | 1 | 2 | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCT---------------------------------------- | 19 | - | - | - | 3 | 3 | - | 2 | - | 1 | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTTCTC------------------------------------ | 23 | - | - | - | 4 | 4 | - | - | 1 | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCTC------------------------------------ | 22 | - | - | 1 | 1 | 5 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCC----------------------------------------- | 18 | - | - | - | 2 | 4 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTTCT------------------------------------- | 22 | 1 | - | - | - | 3 | - | - | - | 1 | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTT--------------------------------------- | 19 | - | - | - | 3 | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCT---------------------------------------- | 18 | 1 | - | - | 1 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTCTC------------------------------------ | 20 | - | - | - | - | 2 | - | - | 1 | - | |
| --------------------------------------TAAGGTGCATCTAGTGCTGT------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | 1 | - | - | |
| --------------------------------------TAAGGTGCATCTAGTGCTGTTAG---------------------------------------------------------------------------- | 23 | - | - | - | 1 | 1 | - | - | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTC-------------------------------------- | 20 | - | - | - | 1 | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTC-------------------------------------- | 18 | - | - | - | 1 | 1 | - | - | - | - | |
| ---------------------------------------AAGGTGCATCTAGTGCTGT------------------------------------------------------------------------------- | 19 | - | - | - | 2 | - | - | - | - | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCT------------------------------------- | 21 | - | - | - | - | 1 | - | - | 1 | - | |
| -------------------------------------------------------------------------------ACTGCCCTAAATGCCCCTTCTCG----------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | |
| ------------------------------------------------------------------------------TACTGCCCTAAATGCCCCTT--------------------------------------- | 20 | - | - | - | 1 | - | - | - | - | - | |
| --------------CTCCTTGTAATGTGTCTCTT------------------------------------------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------TGCCCTAAATGCCCCTTCTCGCAC-------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | |
| rat | ------------TGCTCCTTGTAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTATAATCTACTGCCCTAAATGCCCCTTCTCGCACAGGCTACTGCTTACTCCGCA------------ | ||||||||||
| human | ATGCTTTTGAGCTGCTTCTTATAATGTGTCTCTTGTGTTAAGGTGCATCTAGTGCAGTTAGTGAAGCAGCTTAGAATCTACTGCCCTAAATGCCCCTTCTGGCACAGGCTGCCTAATATACAGCATTTTAAAAGTAT | ||||||||||
| mouse | --------------------------------------TAAGGTGCATCTAGTGCTGTTAGTGAAGCAGCTTACAATCTACTGCCCTAAATGCCCCTTC-------------------------------------- | ||||||||||
| ***************** ***************** ************************* | |||||||||||
| ..... ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. ..... | ENSRNOT00000063045 ENSRNOG00000041292 | ||||||||||
| rat | .((.....((((.((((..(((((((.((((.((((.(((.((((((.....))))))...............))).)))).))))...)))))))..)).))))))...)). | 0.830 -27.79 | |||||||||
| human | (((((((((((.((((...((((.((.((..((((((((((((.((((.(((.(((((..((.(((...)))...))..))))).))).)))).)))..)))))))))..)).)).)))).)))).))))))))))) | 0.999 -43.50 | |||||||||
| mouse | .((((.((((.(((.((.((..((((......)))).....)).)).))).)))).)))). | 0.692 -14.50 | |||||||||
| rat | chromosome:X:139741265:139741377:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## Same_strand|Boundary_non-coding|ENSRNOT00000063045|ENSRNOG00000041292 ## ENSRNOG00000041292|miRNA|| |
| human | chromosome:X:133131704:133131840:-1 | intergenic ## {MIR: hsa-mir-18b} |
| mouse | chromosome:X:50095474:50095626:-1 | Same_strand|Boundary_non-coding|ENSMUST00000103923|ENSMUSG00000077111|miRNA|mmu-mir-18b [Source:miRBase;Acc:MI0005483] ## {MIR: mmu-mir-18b} |
| Back to summary page | candidate homolog loci of miRBase miRNAs: | Page 1 | Page 2 | Page 3 |
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