candidate homolog loci of miRBase miRNAs
miRBaseHomolog_lenNOK_cloningHIGH_multiarm_DicerOK (1 loci)
miRBaseHomolog_rep_cloningHIGH_multiarm_DicerOK_randfoldOK (1 loci)
hsa-mir-544
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-544 5arm | 2 | 1.500 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-544 3arm | 120 | 98.500 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| hsa-mir-544 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| hsa-mir-544 3arm | 0.004 | 0.004 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 |
sblock10510 (miRBaseHomolog hsa-mir-544) [miRBaseHomolog_rep_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog hsa-mir-544 | 0.001 | no | DNA,DNA/MER1_type | 0.28/0.39 | 18/24/0.71 | 0.8 0.0 | 0.2 0.6 | 4 150 | 0 0 | 2 3 | 0 0 | 26 22 | 0 2 | 5arm 3arm | 2 2 | nd nd | 0.05 0.11 | 1 1 | 225 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------UUCUGCA------------------------------------ | 202 | novel | ||
| seed | -------------------------------------------------------------GAUUCUG-------------------------------------- | 13 | novel | ||
| seed | ----------------------------UUGUUAA----------------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------------------AUUCUGC------------------------------------- | 3 | novel | ||
| seed | -----------------------------------------------------------------CUGCAUU---------------------------------- | 3 | miR-20a* | ||
| seed | ---------------------------CUUGUUA------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S1 | |||
| --------------------------------------------------------------ATTCTGCATTTTTAGCAAGC------------------------ | 20 | 53 | 53 | - | |
| --------------------------------------------------------------ATTCTGCATTTTTAGCAA-------------------------- | 18 | 26 | 14 | - | |
| --------------------------------------------------------------ATTCTGCATTTTTAGCAAGCTC---------------------- | 22 | 18 | 6 | 1 | |
| --------------------------------------------------------------ATTCTGCATTTTTAGCAAGCT----------------------- | 21 | 8 | 8 | - | |
| --------------------------------------------------------------ATTCTGCATTTTTAGCAAG------------------------- | 19 | 8 | 5 | - | |
| ------------------------------------------------------------AGATTCTGCATTTTTAGCA--------------------------- | 19 | 3 | 3 | - | |
| ------------------------------------------------------------AGATTCTGCATTTTTAGCAAGCTC---------------------- | 24 | - | 3 | - | |
| ----------------------------------------------------------------TCTGCATTTTTAGCAAGC------------------------ | 18 | - | 3 | - | |
| ------------------------------------------------------------AGATTCTGCATTTTTAGCAAGC------------------------ | 22 | 2 | - | - | |
| --------------------------------------------------------------ATTCTGCATTTTTAGCAAGCTCTC-------------------- | 24 | 1 | 1 | - | |
| ---------------------------CTTGTTAAAAAGCAGATTCT----------------------------------------------------------- | 20 | 1 | 1 | - | |
| ------------------------------------------------------------AGATTCTGCATTTTTAGCAA-------------------------- | 20 | 1 | - | - | |
| --------------------------TCTTGTTAAAAAGCAGATTCT----------------------------------------------------------- | 21 | 1 | - | - | |
| -------------------------------------------------------------GATTCTGCATTTTTAGCAA-------------------------- | 19 | - | 1 | - | |
| ---------------------------CTTGTTAAAAAGCAGATTC------------------------------------------------------------ | 19 | - | 1 | - | |
| ------------------------------------------------------------AGATTCTGCATTTTTAGC---------------------------- | 18 | - | 1 | - | |
| -------------------------------------------------------------GATTCTGCATTTTTAGCAAG------------------------- | 20 | - | 1 | - | |
| -------------------------------------------------------------GATTCTGCATTTTTAGCAAGCTC---------------------- | 23 | - | 1 | - | |
| rat | CGGCTAAGATATTCGTCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTGAGGGACCAAGATTCTGCATTTTTAGCAAGCTCTCAAGTGATGCTAATGCTGCCG | ||||
| human | --------ATTTTCATCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCTCAAGTGATGCTAAT------- | ||||
| mouse | ------------------------GATCTTGTTAAAAAGCAGAGTCTGATTGAGGGGCCAAGATTCTGCATTTTTAGCAAGCTC---------------------- | ||||
| ******************* ******* **** ************************ ** | |||||
| .............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............ | ENSRNOT00000054595 ENSRNOG00000036487 | ||||
| rat | ((((..((.((((((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))..)))))))))) | 0.980 -37.72 | |||
| human | .....((((((...((((.((((((((((((((((.(((..((....))...))).))))).))))))))))).))))..))))))..... | 1.000 -32.60 | |||
| mouse | ((.((((((((((((((((((((.............))))))))).))))))))))).)) | 1.000 -23.82 | |||
| rat | chromosome:6:134410238:134410343:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054595|ENSRNOG00000036487 ## ENSRNOG00000036487|miRNA|| ## {Repeats: MER5A1 100 121 -1 class=DNA/MER1_type,MER5A1 61 87 -1 class=DNA/MER1_type,MER5A1 -1 188 -1 class=DNA} |
| human | chromosome:14:100584748:100584838:1 | Same_strand|Exonic_non-coding|ENST00000384855|ENSG00000207587|miRNA|hsa-mir-544 [Source:miRBase;Acc:MI0003515] ## {Repeats: MER5A1 -1 class=DNA/MER1_type} ## {MIR: hsa-mir-544} |
| mouse | chromosome:12:110967499:110967644:1 | Same_strand|Boundary_non-coding|ENSMUST00000103813|ENSMUSG00000077001|miRNA|mmu-mir-544 [Source:miRBase;Acc:MI0005555] ## {Repeats: MER5A1 -1 class=DNA/MER1_type} ## {MIR: mmu-mir-544} |
| Back to summary page | candidate homolog loci of miRBase miRNAs: | Page 1 | Previous page | Page 3 |
©2008 InteRNA Genomics B.V.