other homolog miRBase miRNAs
miRBaseHomolog_rep_lenNOK_cloningHIGH_multiarm_DicerOK (1 loci)
mmu-mir-666
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-666 5arm | 21 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| mmu-mir-666 3arm | 4147 | 3979 | 6 | 2 | 13 | 16 | 17 | 16 | 60 | 40 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| mmu-mir-666 5arm | 0.001 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
| mmu-mir-666 3arm | 0.138 | 0.174 | 0.000 | 0.000 | 0.001 | 0.001 | 0.001 | 0.001 | 0.004 | 0.003 |
sblock10498 (miRBaseHomolog mmu-mir-666) [miRBaseHomolog_rep_lenNOK_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog mmu-mir-666 | 0.023 | no | SINE/Alu | 0.65/0.76 | 18/25/0.54 | 0.0 0.0 0.0 | 0.9 0.0 1.6 | 36 1 7338 | 0 0 0 | 3 1 10 | 0 0 0 | 34 39 23 | 1 -6 5 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.16 0.33 0.17 | 3 5 3 | 8343 | 10 | 3 | 1 |
| Located in cluster 71: mmu-mir-666, rno-mir-543 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------------GCUGCAG-------------------------------------- | 7898 | novel | |||||||||
| seed | --------------------------------------------------------------------------CUGCAGC------------------------------------- | 392 | novel | |||||||||
| seed | -----------------------------------GCGGGCA---------------------------------------------------------------------------- | 47 | novel | |||||||||
| seed | ------------------------------------------------------------------------GGCUGCA--------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------------------UGCAGCG------------------------------------ | 2 | novel | |||||||||
| seed | --------------------------------------------------------------GGUACAG------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------GGGGCUG----------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCT--------------------------- | 19 | 1279 | 1023 | 2 | - | 2 | 6 | 6 | 2 | 12 | 8 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTGCTC----------------------- | 23 | 898 | 1002 | 1 | 1 | 5 | 3 | 6 | 4 | 15 | 16 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCC---------------------------- | 18 | 617 | 566 | 1 | - | 1 | 1 | 1 | 3 | 8 | 6 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTG-------------------------- | 20 | 500 | 527 | - | 1 | 3 | 1 | 3 | 4 | 10 | 2 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTGC------------------------- | 21 | 465 | 461 | 1 | - | 1 | 3 | 1 | 2 | 7 | 4 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTGCTCA---------------------- | 24 | 96 | 94 | - | - | 1 | - | - | 1 | 1 | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTGCTC----------------------- | 22 | 67 | 73 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTGCT------------------------ | 22 | 62 | 70 | - | - | - | 2 | - | - | 1 | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCT--------------------------- | 18 | 52 | 51 | - | - | - | - | - | - | 2 | 3 | |
| ------------------------------------------------------------------------GGCTGCAGCGTGATCGCCTGCTCAC--------------------- | 25 | 37 | 40 | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTG-------------------------- | 19 | 26 | 27 | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTGC------------------------- | 20 | 27 | 24 | 1 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTGCTCA---------------------- | 23 | 12 | 11 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGCGGGCACGGCTGTGAGA----------------------------------------------------------------- | 19 | 7 | 10 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------AGCGGGCACGGCTGTGAGA-G--------------------------------------------------------------- | 20 | 6 | 7 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTGCTCAC--------------------- | 24 | 5 | 4 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------AGCGGGCACGGCTGTGAG------------------------------------------------------------------ | 18 | 3 | 2 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GCTGCAGCGTGATCGCCTGCT------------------------ | 21 | 2 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGCGGGCACGGCTGTGAGA-GCCCCC---------------------------------------------------------- | 25 | 1 | 3 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGCGGGCACGGCTGTGAGA-GC-------------------------------------------------------------- | 21 | 2 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------GGGCTGCAGCGTGATCGCCTGCTC----------------------- | 24 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGCGGGCACGGCTGTGAGA-GCC------------------------------------------------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGCGGGCACGGCTGTGAGA-GCCC------------------------------------------------------------ | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------CTGCAGCGTGATCGCCTGCTC----------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------CTGCAGCGTGATCGCCTGC------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------CGGGGCTGCAGCGTGATCG------------------------------ | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------AGGTACAGCGGGGCTGCA--------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | GCCTGTCTACAAGATCCTGATTCTGCCTGCGTGGAGCGGGCACGGCTGTGAGA-GCCCCCTAGGTACAGCGGGGCTGCAGCGTGATCGCCTGCTCACGCACAGGAAGTGACGACAGCG | |||||||||||
| human | -------------------------------------GGACAGGGTCTCACGCTGTCACCCAGG--CAGGAGTGCTGCAGCGTGATC-TCAGCTC----------------------- | |||||||||||
| mouse | ----------------------------------AGCGGGCACAGCTGTGAGA-GCCCCCTAGGTACAGCGGGGCTGCAGCGTGATCGCCTGCT------------------------ | |||||||||||
| ** ** * * * * ** *** *** * ************** * *** | ||||||||||||
| .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....... | ENSRNOT00000062111 ENSRNOG00000040358 | |||||||||||
| rat | ((.((((..((...(((((........(((((.((((((((.(((((((...( (((((((......)).))))))))))).))...))))))))))))))))))..))..)))))). | 0.780 -53.60 | ||||||||||
| human | .....(((..((((((((((((((... ..)).)))..))))))))).) ))..... | 0.995 -21.90 | ||||||||||
| mouse | (((((((.(((((((...( (((((((......)).))))))))))).))...))))))) | 1.000 -30.70 | ||||||||||
| rat | chromosome:6:134397005:134397121:1 | Same_strand|Exonic_non-coding|ENSRNOT00000062111|ENSRNOG00000040358 ## ENSRNOG00000040358|miRNA|| |
| human | chromosome:20:33008418:33008574:-1 | intergenic ## {Repeats: AluSx -1 class=SINE/Alu} |
| mouse | chromosome:12:110955259:110955415:1 | Same_strand|Boundary_non-coding|ENSMUST00000102317|ENSMUSG00000076272|miRNA|mmu-mir-666 [Source:miRBase;Acc:MI0004553] ## {Repeats: trf 0 class=trf} ## {MIR: mmu-mir-666} |
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