========== block328359 (miRBase rno-mir-215) [miRNAknown_cloningHIGH_randfoldOK] ========== #randfold block328359: 0.005 randfold humanZ3p1_block328359: 0.001 randfold mouseZ3p1_block328359: 0.002 #forester humanZ3p1_block328359: 0.737189 forester mouseZ3p1_block328359: 0.76939 #identity: 88.30 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT5S1 21 24 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT5S1 22 13 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT5S2 21 10 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT3S2 21 9 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT4S1 21 9 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT5S1 20 7 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT3S1 21 7 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT4S1 22 6 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT5S1 19 5 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT3S2 22 5 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT5S1 18 4 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT4S1 19 4 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT4S2 21 4 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT1S1 22 4 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT2S1 22 4 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT2S2 22 4 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT3S1 22 4 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT5S2 22 4 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT5S2 18 3 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT4S2 19 3 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT4S2 20 3 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT2S2 21 3 block328359 ATGACCTATGATTTGACAGACA #rat_gr227355_libT4S2 22 3 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT3S1 18 2 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT1S2 19 2 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT5S2 19 2 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT1S1 20 2 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT3S1 20 2 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT1S2 18 1 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT2S2 18 1 block328359 ATGACCTATGATTTGACA #rat_gr227351_libT4S1 18 1 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT2S1 19 1 block328359 ATGACCTATGATTTGACAG #rat_gr227352_libT2S2 19 1 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT1S2 20 1 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT2S1 20 1 block328359 ATGACCTATGATTTGACAGA #rat_gr227353_libT5S2 20 1 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libMirbase_rno-miR-215 21 1 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT1S1 21 1 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT1S2 21 1 block328359 ATGACCTATGATTTGACAGAC #rat_gr227354_libT2S1 21 1 block328359 TGACCTATGATTTGACAG #rat_gr935367_libT2S2 18 1 block328359 TGACCTATGATTTGACAGA #rat_gr935368_libT3S2 19 1 block328359 GGTGTACAGGACAATGACCTATGATTTGACAGACAGTGTGGCTGCGTGTGTCTGTCA-TTCTGTAGGCCAATATTCTGTATGTCTCTCCTCCTTACAA humanZ3p1 -------------ATGACCTATGAATTGACAGACAATATAGCTGAGTTTGTCTGTCATTTCTTTAGGCCAA--------------------------- mouseZ3p1 -------------ATGACCTATGATTTGACAGACCGTGCAGCTGTGTATGTCTGTCA-TTCTGTAGGCCAA--------------------------- *********** ********* * **** ** ********* **** ******** block328359 -------------------------------------------------------------- --------------------------------------------- #ENSRNOT00000057395 ENSRNOG00000002368 Iars2 block328359 -------------------------------------------------------------- --------------------------------------------- #ENSRNOT00000057394 ENSRNOG00000002368 Iars2 block328359 -------------------------------------------------------------- --------------------------------------------- #ENSRNOT00000057393 ENSRNOG00000002368 Iars2 block328359 -------------------------------------------------------------- --------------------------------------------- #ENSRNOT00000003222 ENSRNOG00000002368 Iars2 block328359 -------------------------------------------------------------- --------------------------------------------- #ENSRNOT00000057392 ENSRNOG00000002368 Iars2 block328359 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054364 ENSRNOG00000036241 rno-mir-215 block328359 ((..(((((((.(.((.(((((((..((((((((.(..((....))..))))))))) .)).))))).)).).)))))))..)).............. 1.000 -31.40 # humanZ3p1 .((.((((.(((.((((((((((...........)))))))))).)))..)))).)). 1.000 -22.10 # mouseZ3p1 .((.(((((((..(((((((.((((((....))))))))))))) .)).))))).)). 1.000 -22.40 # #block328359 chromosome:13:101312688:101312784:1 Opposite_strand|Intronic_coding|ENSRNOT00000003222|ENSRNOG00000002368 ## Same_strand|Exonic_non-coding|ENSRNOT00000054364|ENSRNOG00000036241 ## ENSRNOG00000036241|miRNA|rno-mir-215|rno-mir-215 [Source:miRBase;Acc:MI0003482] ## ENSRNOG00000002368|protein_coding|Iars2|isoleucine-tRNA synthetase 2, mitochondrial Gene [Source:MGI (curated);Acc:Iars2-001] ## {MIR: rno-mir-215} #humanZ3p1 chromosome:1:218357798:218357934:-1 Opposite_strand|Intronic_coding|ENST00000302637|ENSG00000067704|protein_coding|Isoleucyl-tRNA synthetase, mitochondrial Precursor (EC 6.1.1.5)(Isoleucine--tRNA ligase)(IleRS) [Source:UniProtKB/Swiss-Prot;Acc:Q9NSE4] ## Same_strand|Boundary_non-coding|ENST00000384858|ENSG00000207590|miRNA|hsa-mir-215 [Source:miRBase;Acc:MI0000291] ## {MIR: hsa-mir-215} #mouseZ3p1 chromosome:1:187137456:187137592:1 Opposite_strand|Intronic_coding|ENSMUST00000027921|ENSMUSG00000026618|protein_coding|isoleucine-tRNA synthetase 2, mitochondrial Gene [Source:MGI (curated);Acc:Iars2-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083628|ENSMUSG00000065562|miRNA|mmu-mir-215 [Source:miRBase;Acc:MI0000974] ## {MIR: mmu-mir-215} ========== block559933 (miRBase rno-mir-346) [miRNAknown_cloningHIGH_randfoldOK] ========== #randfold block559933: 0.001 randfold humanZ4p1_block559933: 0.001 randfold mouseZ5p1_block559933: 0.001 #forester humanZ4p1_block559933: 0.848763 forester mouseZ5p1_block559933: 0.975543 #identity: 95.79 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT1S1 24 431 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT1S2 24 332 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT1S1 22 149 block559933 TGTCTGCCTGAGTGCCTGCCTCT #rat_gr1081535_libT1S1 23 144 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT1S1 20 136 block559933 TGTCTGCCTGAGTGCCTGCCTCT #rat_gr1081535_libT1S2 23 121 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT1S2 22 107 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT1S2 20 96 block559933 TGTCTGCCTGAGTGCCTGC #rat_gr1081531_libT1S1 19 77 block559933 TGTCTGCCTGAGTGCCTGC #rat_gr1081531_libT1S2 19 62 block559933 TGTCTGCCTGAGTGCCTGCCT #rat_gr1081533_libT1S1 21 45 block559933 TGTCTGCCTGAGTGCCTG #rat_gr1081530_libT1S2 18 34 block559933 TGTCTGCCTGAGTGCCTG #rat_gr1081530_libT1S1 18 33 block559933 TGTCTGCCTGAGTGCCTGCCT #rat_gr1081533_libT1S2 21 31 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT4S2 24 20 block559933 TGTCTGCCTGAGTGCCTGCCTCT #rat_gr1081535_libT4S2 23 17 block559933 CTGTCTGCCTGAGTGCCTG #rat_gr454906_libT1S2 19 14 block559933 CTGTCTGCCTGAGTGCCTGCCTCTC #rat_gr454912_libT1S1 25 12 block559933 CTGTCTGCCTGAGTGCCT #rat_gr454905_libT1S1 18 11 block559933 CTGTCTGCCTGAGTGCCTGCCTCTC #rat_gr454912_libT1S2 25 11 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT4S1 24 10 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT4S2 22 8 block559933 CTGTCTGCCTGAGTGCCT #rat_gr454905_libT1S2 18 7 block559933 CTGTCTGCCTGAGTGCCTG #rat_gr454906_libT1S1 19 7 block559933 CTGTCTGCCTGAGTGCCTGCCTC #rat_gr454910_libT1S1 23 7 block559933 TGTCTGCCTGAGTGCCTGCCTCTCT #rat_gr1081537_libT1S1 25 7 block559933 TCTGTCTGCCTGAGTGCCT #rat_gr909603_libT1S1 19 6 block559933 TCTGTCTGCCTGAGTGCCTG #rat_gr909604_libT1S1 20 6 block559933 TCTGTCTGCCTGAGTGCCTGCC #rat_gr909606_libT1S2 22 6 block559933 CTGTCTGCCTGAGTGCCTGCC #rat_gr454908_libT1S1 21 6 block559933 CTGTCTGCCTGAGTGCCTGCCTC #rat_gr454910_libT1S2 23 6 block559933 TGTCTGCCTGAGTGCCTGC #rat_gr1081531_libT4S2 19 6 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT4S2 20 6 block559933 TCTGTCTGCCTGAGTGCC #rat_gr909602_libT1S1 18 5 block559933 GTCTGCCTGAGTGCCTGCCTCTC #rat_gr641529_libT1S1 23 5 block559933 TCTGTCTGCCTGAGTGCC #rat_gr909602_libT1S2 18 4 block559933 TCTGTCTGCCTGAGTGCCT #rat_gr909603_libT1S2 19 4 block559933 TCTGTCTGCCTGAGTGCCTGCCTC #rat_gr909608_libT1S1 24 4 block559933 TGTCTGCCTGAGTGCCTGCCTCT #rat_gr1081535_libT5S1 23 4 block559933 TCTGTCTGCCTGAGTGCCTGCCTC #rat_gr909608_libT1S2 24 3 block559933 CTGTCTGCCTGAGTGCCTGCC #rat_gr454908_libT1S2 21 3 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT4S1 20 3 block559933 TGTCTGCCTGAGTGCCTGCCT #rat_gr1081533_libT4S2 21 3 block559933 TGTCTGCCTGAGTGCCTGCCTCTCT #rat_gr1081537_libT1S2 25 3 block559933 GTCTGCCTGAGTGCCTGCCTC #rat_gr641528_libT1S2 21 3 block559933 TCTGTCTGCCTGAGTGCCTGCC #rat_gr909606_libT1S1 22 2 block559933 CTGTCTGCCTGAGTGCCTGCCTCT #rat_gr454911_libT1S1 24 2 block559933 CTGTCTGCCTGAGTGCCTGCCTCT #rat_gr454911_libT1S2 24 2 block559933 TGTCTGCCTGAGTGCCTG #rat_gr1081530_libT4S1 18 2 block559933 TGTCTGCCTGAGTGCCTG #rat_gr1081530_libT4S2 18 2 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT5S2 20 2 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT3S1 24 2 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT5S1 24 2 block559933 GTCTGCCTGAGTGCCTGCC #rat_gr641527_libT1S2 19 2 block559933 GTCTGCCTGAGTGCCTGCCTC #rat_gr641528_libT1S1 21 2 block559933 GTCTGCCTGAGTGCCTGCCTCTC #rat_gr641529_libT1S2 23 2 block559933 TCTGTCTGCCTGAGTGCCTG #rat_gr909604_libT1S2 20 1 block559933 TCTGTCTGCCTGAGTGCCTGC #rat_gr909605_libT1S1 21 1 block559933 TCTGTCTGCCTGAGTGCCTGC #rat_gr909605_libT1S2 21 1 block559933 TCTGTCTGCCTGAGTGCCTGCCT #rat_gr909607_libT1S1 23 1 block559933 TCTGTCTGCCTGAGTGCCTGCCTCTC #rat_gr909609_libT1S1 26 1 block559933 TCTGTCTGCCTGAGTGCCTGCCTCTC #rat_gr909609_libT1S2 26 1 block559933 CTGTCTGCCTGAGTGCCTGC #rat_gr454907_libT1S2 20 1 block559933 CTGTCTGCCTGAGTGCCTGCCT #rat_gr454909_libT1S1 22 1 block559933 CTGTCTGCCTGAGTGCCTGCCT #rat_gr454909_libT1S2 22 1 block559933 TGTCTGCCTGAGTGCCTG #rat_gr1081530_libT2S1 18 1 block559933 TGTCTGCCTGAGTGCCTGCC #rat_gr1081532_libT5S1 20 1 block559933 TGTCTGCCTGAGTGCCTGCCT #rat_gr1081533_libT3S1 21 1 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT2S1 22 1 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT4S1 22 1 block559933 TGTCTGCCTGAGTGCCTGCCTC #rat_gr1081534_libT5S2 22 1 block559933 TGTCTGCCTGAGTGCCTGCCTCT #rat_gr1081535_libMirbase_rno-miR-346 23 1 block559933 TGTCTGCCTGAGTGCCTGCCTCTC #rat_gr1081536_libT2S1 24 1 block559933 GTCTGCCTGAGTGCCTGC #rat_gr641526_libT1S1 18 1 block559933 GTCTGCCTGAGTGCCTGC #rat_gr641526_libT1S2 18 1 block559933 --------------------TCTGTGTTGGGCATCTGTCTGCCTGAGTGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCCTGCAGCTGCCTGGGCAGAGCTGCTCCTTC------------------ humanZ4p1 AGACGAGCGTGTGGGAGGTCTCTGTGTTGGGCGTCTGTCTGCCCGCATGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCCTGCAGCTGCCTGGGCAGAGCGGCTCCTGCATGGGACATGGCTCTTCT mouseZ5p1 -----------------------------------TGTCTGCCCGAGTGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCCTGCA------------------------------------------- ******** * ********************************************** block559933 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000060766 ENSRNOG00000039629 Grid1 block559933 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053687 ENSRNOG00000035564 rno-mir-346 block559933 (((((.(..((((.((((..((((.(((.((((((((.((..........)))))))))).)))))))..)))).))))..))))))........... 1.000 -49.00 # humanZ4p1 (((.(((((((..((((..((((((.(((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))))))))))...))))..)))........)))).))) 0.984 -66.70 # mouseZ5p1 .((..((((.(((.((((((((.((..........)))))))))).)))))))..)). 1.000 -31.50 # #block559933 chromosome:16:10553485:10553582:1 Same_strand|Exonic_non-coding|ENSRNOT00000053687|ENSRNOG00000035564 ## Same_strand|Intronic_coding|ENSRNOT00000060766|ENSRNOG00000039629 ## ENSRNOG00000039629|protein_coding|Grid1|glutamate receptor, ionotropic, delta 1 (Grid1), mRNA [Source:RefSeq_dna;Acc:NM_024378] ## ENSRNOG00000035564|miRNA|rno-mir-346|rno-mir-346 [Source:miRBase;Acc:MI0000633] ## {MIR: rno-mir-346} #humanZ4p1 chromosome:10:88014406:88014541:-1 Same_strand|Boundary_non-coding|ENST00000372087|ENSG00000182771|protein_coding|Glutamate receptor delta-1 subunit Precursor (GluR delta-1) [Source:UniProtKB/Swiss-Prot;Acc:Q9ULK0] ## Same_strand|Intronic_coding|ENST00000404212|ENSG00000182771|protein_coding|Glutamate receptor delta-1 subunit Precursor (GluR delta-1) [Source:UniProtKB/Swiss-Prot;Acc:Q9ULK0] ## {MIR: hsa-mir-346} #mouseZ5p1 chromosome:14:35707775:35707912:1 Same_strand|Intronic_coding|ENSMUST00000043349|ENSMUSG00000041078|protein_coding|glutamate receptor, ionotropic, delta 1 Gene [Source:MGI Symbol;Acc:MGI:95812] ## Same_strand|Boundary_non-coding|ENSMUST00000083547|ENSMUSG00000065481|miRNA|mmu-mir-346 [Source:miRBase;Acc:MI0000634] ## {MIR: mmu-mir-346} ========== block2895905 (miRBase rno-mir-883) [miRNAknown_cloningOK_randfoldOK] ========== #randfold block2895905: 0.001 randfold mouseZ12p1_block2895905: 0.001 #forester mouseZ12p1_block2895905: 0.890024 #identity: 93.42 block2895905 TAACTGCAACATCTCTCAGTAT #rat_gr717967_libT5S1 22 5 block2895905 TAACTGCAACATCTCTCAGTATT #rat_gr717968_libT5S1 23 4 block2895905 AACTGCAACATCTCTCAGTA #rat_gr38755_libT5S1 20 4 block2895905 TAACTGCAACATCTCTCAGTATT #rat_gr717968_libT5S2 23 3 block2895905 AACTGCAACATCTCTCAGTATT #rat_gr38757_libT5S1 22 2 block2895905 AACTGCAACATCTCTCAGTAT #rat_gr38756_libT5S1 21 2 block2895905 TAACTGCAACATCTCTCAGTAT #rat_gr717967_libT5S2 22 2 block2895905 TAACTGCAACATCTCTCAGTA #rat_gr717966_libT5S1 21 2 block2895905 AACTGCAACATCTCTCAGT #rat_gr38754_libT5S1 19 2 block2895905 TAACTGCAACATCTCTCAGT #rat_gr717965_libT5S1 20 2 block2895905 TAACTGCAACATCTCTCAG #rat_gr717964_libT5S2 19 2 block2895905 TAACTGCAACATCTCTCAGTAT #rat_gr717967_libMirbase_rno-miR-883 22 1 block2895905 TAACTGCAACATCTCTCAGTAT #rat_gr717967_libT1S1 22 1 block2895905 TAACTGCAACATCTCTCAGTAT #rat_gr717967_libT1S2 22 1 block2895905 TAACTGCAACATCTCTCAGT #rat_gr717965_libT1S2 20 1 block2895905 AACTGCAACATCTCTCAG #rat_gr38752_libT3S1 18 1 block2895905 TAACTGCAACATCTCTCAG #rat_gr717964_libT2S1 19 1 block2895905 TAACTGCAACATCTCTCAG #rat_gr717964_libT4S1 19 1 block2895905 TAACTGCAACATCTCTCAG #rat_gr717964_libT5S1 19 1 block2895905 TAACTGCAACATCTCTCA #rat_gr717963_libT5S1 18 1 block2895905 -------TGCACT-CAATGCTGAGAGAAGTAGCAGTTACTTTTTACTCTTAAGTAACTGCAACATCTCTCAGTATTGTAAGGCTC--------------- mouseZ12p1 ATTCGTGTGCACTATAATGCTGAGAGAAGTAGCAGTTACTTTATTCTA-TAAGTAACTGCAACAGCTCTCAGTATTGTAAGGCTCAACAAACGCAGGGAT ****** *************************** * ** *************** ******************** block2895905 ..... >>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000063041 ENSRNOG00000041288 rno-mir-883 block2895905 .((... (((((((((((((.((.((((((((((.........)))))))))).)).)))))))))))))....)).. 1.000 -38.50 # mouseZ12p1 ((((.(((((..((((((((((((((..((.((((((((((....... .)))))))))).))..))))))))))))))..)).........))).)))) 0.999 -41.70 # #block2895905 chromosome:X:152829659:152829735:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063041|ENSRNOG00000041288 ## ENSRNOG00000041288|miRNA|rno-mir-883|rno-mir-883 [Source:miRBase;Acc:MI0006126] ## {MIR: rno-mir-883} #mouseZ12p1 chromosome:X:64033918:64034016:-1 Same_strand|Boundary_non-coding|ENSMUST00000104824|ENSMUSG00000078017|miRNA|mmu-mir-883a [Source:miRBase;Acc:MI0005476] ## {MIR: mmu-mir-883a} ========== block2895942 (miRBase rno-mir-878) [miRNAknown_cloningHIGH_randfoldOK] ========== #randfold block2895942: 0.003 randfold mouseZ15p1_block2895942: 0.001 #forester mouseZ15p1_block2895942: 0.850277 #identity: 93.51 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT5S1 22 22 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT5S1 20 20 block2895942 TGCATGACACCATACTGG #rat_gr962913_libT5S1 18 11 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT1S1 22 6 block2895942 GCATGACACCATACTGGGTAGA #rat_gr537705_libT5S1 22 5 block2895942 TGCATGACACCATACTGGG #rat_gr962914_libT5S1 19 4 block2895942 TGCATGACACCATACTGG #rat_gr962913_libT1S1 18 4 block2895942 TGCATGACACCATACTGGGTAGA #rat_gr962918_libT1S1 23 3 block2895942 GCATGACACCATACTGGGT #rat_gr537702_libT5S1 19 3 block2895942 TGCATGACACCATACTGG #rat_gr962913_libT1S2 18 3 block2895942 CATGACACCATACTGGGTAGA #rat_gr311586_libT1S1 21 2 block2895942 TGCATGACACCATACTGGGTAGA #rat_gr962918_libT4S2 23 2 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT2S1 22 2 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT4S1 22 2 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT4S1 20 2 block2895942 GCATGACACCATACTGGG #rat_gr537701_libT1S1 18 2 block2895942 GCATGACACCATACTGGG #rat_gr537701_libT5S1 18 2 block2895942 TGCATGACACCATACTGGG #rat_gr962914_libT4S1 19 2 block2895942 TGCATGACACCATACTGGGTAGAG #rat_gr962919_libT5S1 24 1 block2895942 TGCATGACACCATACTGGGTAGAG #rat_gr962919_libT5S2 24 1 block2895942 CATGACACCATACTGGGTAGA #rat_gr311586_libT5S1 21 1 block2895942 GCATGACACCATACTGGGTAGA #rat_gr537705_libMirbase_rno-miR-878 22 1 block2895942 GCATGACACCATACTGGGTAGA #rat_gr537705_libT1S2 22 1 block2895942 GCATGACACCATACTGGGTAGA #rat_gr537705_libT2S2 22 1 block2895942 TGCATGACACCATACTGGGTAGA #rat_gr962918_libT2S1 23 1 block2895942 GCATGACACCATACTGGGTAG #rat_gr537704_libT4S2 21 1 block2895942 GCATGACACCATACTGGGTAG #rat_gr537704_libT5S1 21 1 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT1S2 22 1 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT2S2 22 1 block2895942 TGCATGACACCATACTGGGTAG #rat_gr962917_libT4S2 22 1 block2895942 GCATGACACCATACTGGGTA #rat_gr537703_libT5S1 20 1 block2895942 TGCATGACACCATACTGGGTA #rat_gr962916_libT1S1 21 1 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT1S1 20 1 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT1S2 20 1 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT3S2 20 1 block2895942 TGCATGACACCATACTGGGT #rat_gr962915_libT4S2 20 1 block2895942 TGCATGACACCATACTGGG #rat_gr962914_libT1S2 19 1 block2895942 ------------------TGCAGTGCTTTATCTAGTTGGCTGTC-AGTCACGTGAAACTCAAGTGCATGACACCATACTGGGTAGAGGAGGGCTCA-------------- mouseZ15p1 AATGAAAAGAGTGTTGTGTGCAATGCTTTATCTAGTTGGATGTCAAGACACGTGAAACTTAAGTGCATGACACCACACTGGGTAGAGGAGGGCTCACAGTGTTCCTCATT **** **************** **** ** *********** *************** ******************** block2895942 ..... >>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000062952 ENSRNOG00000041199 rno-mir-878 block2895942 .((..(.((((((((((((((.(((( (..(((.((.....)).)))..)))))))).))))))))))).)..))... 1.000 -30.70 # mouseZ15p1 (((((...(((..(((((.((....((((((((((((((.(((((...(((...........)))..)))))))).)))))))))))....)).)))))..))).))))) 0.986 -39.40 # #block2895942 chromosome:X:152851739:152851815:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062952|ENSRNOG00000041199 ## ENSRNOG00000041199|miRNA|rno-mir-878|rno-mir-878 [Source:miRBase;Acc:MI0006120] ## {MIR: rno-mir-878} #mouseZ15p1 chromosome:X:64054669:64054778:-1 Same_strand|Boundary_non-coding|ENSMUST00000104680|ENSMUSG00000077872|miRNA|mmu-mir-878 [Source:miRBase;Acc:MI0005548] ## {MIR: mmu-mir-878} ========== sblock10433 (miRBase rno-mir-345) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10433: 0.002 randfold mouseZ4p82_sblock10433: 0.001 #forester mouseZ4p82_sblock10433: 1 #identity: 100.00 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT1S1 21 559 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT1S2 21 517 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT5S1 21 455 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT5S2 21 360 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT1S1 21 346 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT4S1 21 294 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT4S2 21 287 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT3S1 21 269 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT4S1 21 254 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT2S1 21 252 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT5S1 21 244 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT5S2 21 244 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT3S1 21 228 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT1S1 19 216 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT1S2 22 209 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT1S1 20 209 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT1S1 18 208 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT1S2 21 200 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT3S1 22 196 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT2S2 21 191 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT5S2 22 176 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT1S1 20 174 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT1S1 18 169 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT5S1 22 168 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT3S2 21 165 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libT4S2 21 165 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT4S1 22 164 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT5S2 20 159 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT4S1 18 156 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT3S2 21 156 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT5S2 18 154 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT3S1 18 152 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT5S2 20 152 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT2S1 18 139 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT3S2 22 139 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT4S1 20 135 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT1S1 22 134 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT4S2 20 132 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT1S2 20 129 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT1S2 20 128 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT1S2 18 125 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT3S1 19 123 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT5S2 19 122 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT5S1 20 122 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT5S1 20 120 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT2S1 22 120 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT1S2 18 120 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT2S1 21 120 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT2S1 20 118 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT4S2 18 114 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT5S2 18 113 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT3S1 20 111 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT4S1 19 107 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT5S1 19 105 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT1S2 19 104 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT2S2 18 103 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT1S2 19 102 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT3S2 18 101 sblock10433 TGCTGACCCCTAGTCCAG #rat_gr973457_libT5S1 18 99 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT2S1 19 98 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT2S2 22 97 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT2S2 20 90 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT3S2 19 86 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT5S1 18 86 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT4S2 20 86 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT1S1 19 84 sblock10433 GCTGACCCCTAGTCCAGTGCT #rat_gr571366_libT2S2 21 84 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT4S1 20 82 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT2S2 19 78 sblock10433 TGCTGACCCCTAGTCCAGTG #rat_gr973459_libT3S2 20 77 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT4S2 18 77 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT5S2 19 76 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT3S1 20 64 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT3S1 18 63 sblock10433 TGCTGACCCCTAGTCCAGT #rat_gr973458_libT4S2 19 59 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT4S1 18 56 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT3S2 20 55 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT4S2 19 54 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT3S1 19 50 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT5S1 19 48 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT3S2 18 44 sblock10433 TGCTGACCCCTAGTCCAGTGCT #rat_gr973461_libT4S2 22 43 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT2S1 18 41 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT2S1 20 39 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT4S1 19 26 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT3S2 19 24 sblock10433 GCTGACCCCTAGTCCAGTGC #rat_gr571365_libT2S2 20 24 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT2S1 19 23 sblock10433 GCTGACCCCTAGTCCAGT #rat_gr571363_libT2S2 18 22 sblock10433 GCTGACCCCTAGTCCAGTG #rat_gr571364_libT2S2 19 20 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT2S2 23 15 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT5S2 22 15 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT2S1 23 13 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT3S1 22 10 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT1S1 22 9 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT3S1 23 8 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT2S2 22 8 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT1S2 23 7 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT4S1 23 7 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT5S1 23 7 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT5S2 23 7 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT4S1 22 7 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT1S2 22 6 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT5S1 18 6 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT1S1 22 6 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT1S1 23 5 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT4S2 22 5 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT5S1 22 5 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT4S2 22 5 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT5S2 22 5 sblock10433 TGCTGACCCCTAGTCCAGTGCTT #rat_gr973462_libT3S2 23 4 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT3S2 22 4 sblock10433 TGACCCCTAGTCCAGTGCT #rat_gr934873_libT5S1 19 4 sblock10433 TGACCCCTAGTCCAGTGCTT #rat_gr934874_libT4S2 20 4 sblock10433 TGACCCCTAGTCCAGTGCTTG #rat_gr934875_libT5S1 21 4 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT2S2 18 3 sblock10433 TGACCCCTAGTCCAGTGCT #rat_gr934873_libT1S1 19 3 sblock10433 TGACCCCTAGTCCAGTGCTT #rat_gr934874_libT1S1 20 3 sblock10433 GCTGACCCCTAGTCCAGTGCTT #rat_gr571367_libT2S1 22 2 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT1S2 18 2 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT5S2 18 2 sblock10433 TGACCCCTAGTCCAGTGCT #rat_gr934873_libT3S1 19 2 sblock10433 TGACCCCTAGTCCAGTGCTT #rat_gr934874_libT1S2 20 2 sblock10433 GACCCCTAGTCCAGTGCT #rat_gr496300_libT2S2 18 2 sblock10433 CTGCTGACCCCTAGTCCAGTGC #rat_gr445044_libT5S1 22 1 sblock10433 TGCTGACCCCTAGTCCAGTGC #rat_gr973460_libMirbase_rno-miR-345-5p 21 1 sblock10433 GCTGACCCCTAGTCCAGTGCTTGT #rat_gr571368_libT4S2 24 1 sblock10433 CTGACCCCTAGTCCAGTGCT #rat_gr436191_libT3S1 20 1 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT1S1 18 1 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT2S1 18 1 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT3S1 18 1 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT4S1 18 1 sblock10433 TGACCCCTAGTCCAGTGC #rat_gr934872_libT4S2 18 1 sblock10433 TGACCCCTAGTCCAGTGCT #rat_gr934873_libT3S2 19 1 sblock10433 TGACCCCTAGTCCAGTGCT #rat_gr934873_libT4S2 19 1 sblock10433 TGACCCCTAGTCCAGTGCTT #rat_gr934874_libT3S1 20 1 sblock10433 TGACCCCTAGTCCAGTGCTTG #rat_gr934875_libT4S2 21 1 sblock10433 TGACCCCTAGTCCAGTGCTTG #rat_gr934875_libT5S2 21 1 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT1S2 22 1 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT3S1 22 1 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT3S2 22 1 sblock10433 TGACCCCTAGTCCAGTGCTTGT #rat_gr934876_libT5S1 22 1 sblock10433 TGACCCCTAGTCCAGTGCTTGTG #rat_gr934877_libT3S1 23 1 sblock10433 TGACCCCTAGTCCAGTGCTTGTG #rat_gr934877_libT5S2 23 1 sblock10433 GACCCCTAGTCCAGTGCT #rat_gr496300_libT5S2 18 1 sblock10433 GACCCCTAGTCCAGTGCTTGT #rat_gr496301_libT3S1 21 1 sblock10433 CAGTGCTTGTGGTGGCTACTG #rat_gr304711_libT2S1 21 1 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT1S1 20 24 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT5S1 20 24 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT5S2 21 19 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT1S1 21 17 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT5S2 21 15 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT1S2 20 14 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT4S1 20 13 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT5S1 21 13 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT1S1 21 12 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT1S2 21 12 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT4S2 21 12 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT1S1 19 10 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT5S2 19 10 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT3S2 20 10 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT5S2 20 10 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT4S1 21 8 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT5S1 18 7 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT1S2 19 7 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT5S1 19 7 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT2S2 21 7 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT5S2 20 6 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT2S1 20 6 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT3S1 20 6 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT1S2 21 5 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT3S2 21 5 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT5S1 22 5 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT1S1 18 4 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT5S2 19 4 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT5S1 20 4 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT2S1 21 4 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT3S1 21 4 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT3S2 21 4 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT4S1 18 4 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT4S2 18 4 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT5S2 18 4 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT4S1 19 4 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT2S1 21 4 sblock10433 CCTGAACTAGGGGTCTGGAGA #rat_gr377344_libT3S1 21 4 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT5S2 22 4 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT5S1 21 3 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT3S1 19 3 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT3S2 19 3 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT2S2 20 3 sblock10433 CCTGAACTAGGGGTCTGGAG #rat_gr377343_libT4S2 20 3 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT1S1 22 3 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT1S2 22 3 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT2S1 22 3 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT1S2 18 2 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT1S2 19 2 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT4S2 19 2 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT1S1 20 2 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT3S1 20 2 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT3S2 20 2 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT4S1 20 2 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT4S1 21 2 sblock10433 CCCTGAACTAGGGGTCTGGAGA #rat_gr361294_libT1S1 22 2 sblock10433 CCCTGAACTAGGGGTCTGGAGA #rat_gr361294_libT5S2 22 2 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT1S1 18 2 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT1S2 18 2 sblock10433 CCTGAACTAGGGGTCTGG #rat_gr377341_libT3S1 18 2 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT2S1 19 2 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT2S2 19 2 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT3S1 22 2 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT4S1 22 2 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT4S2 22 2 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT2S1 18 1 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT2S2 18 1 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT4S2 18 1 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT5S1 18 1 sblock10433 CCCTGAACTAGGGGTCTG #rat_gr361290_libT5S2 18 1 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT1S1 19 1 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT2S1 19 1 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT3S1 19 1 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT3S2 19 1 sblock10433 CCCTGAACTAGGGGTCTGG #rat_gr361291_libT5S1 19 1 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT1S2 20 1 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT2S1 20 1 sblock10433 CCCTGAACTAGGGGTCTGGA #rat_gr361292_libT2S2 20 1 sblock10433 CCCTGAACTAGGGGTCTGGAG #rat_gr361293_libT4S2 21 1 sblock10433 CCCTGAACTAGGGGTCTGGAGA #rat_gr361294_libMirbase_rno-miR-345-3p 22 1 sblock10433 CCCTGAACTAGGGGTCTGGAGA #rat_gr361294_libT2S1 22 1 sblock10433 CCCTGAACTAGGGGTCTGGAGA #rat_gr361294_libT4S1 22 1 sblock10433 CCCTGAACTAGGGGTCTGGAGAC #rat_gr361295_libT4S1 23 1 sblock10433 CCCTGAACTAGGGGTCTGGAGAC #rat_gr361295_libT5S2 23 1 sblock10433 CCTGAACTAGGGGTCTGGA #rat_gr377342_libT4S2 19 1 sblock10433 CCTGAACTAGGGGTCTGGAGAC #rat_gr377345_libT2S2 22 1 sblock10433 CCTGAACTAGGGGTCTGGAGACC #rat_gr377346_libT3S1 23 1 sblock10433 CTGAACTAGGGGTCTGGAGA #rat_gr434690_libT5S1 20 1 sblock10433 TGAACTAGGGGTCTGGAG #rat_gr925697_libT3S1 18 1 sblock10433 ACCTGGGTTTGATCTCCACAG #rat_gr107761_libT5S1 21 1 sblock10433 ACCCAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCACAGG mouseZ4p82 ---CAAGTCCAGGCCTGCTGACCCCTAGTCCAGTGCTTGTGGTGGCTACTGGGCCCTGAACTAGGGGTCTGGAGACCTGGGTTTGATCTCCA---- ***************************************************************************************** sblock10433 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053741 ENSRNOG00000035618 rno-mir-345 sblock10433 ...(((..(((((.((.(.((((((((((.(((.((((((((...)))).)))).))).)))))))))).).)).)))))..)))........... 1.000 -47.60 # mouseZ4p82 (((..(((((.((.((((((((((((.(((.((((((((...)))).)))).))).)))))))))).)))).)))))..)))....... 0.999 -45.00 # #sblock10433 chromosome:6:133178806:133178901:1 Same_strand|Exonic_non-coding|ENSRNOT00000053741|ENSRNOG00000035618 ## ENSRNOG00000035618|miRNA|rno-mir-345|rno-mir-345 [Source:miRBase;Acc:MI0000631] ## {MIR: rno-mir-345} #mouseZ4p82 chromosome:12:110075186:110075274:1 Same_strand|Exonic_non-coding|ENSMUST00000083495|ENSMUSG00000065429|miRNA|mmu-mir-345 [Source:miRBase;Acc:MI0000632] ## {MIR: mmu-mir-345} ========== sblock10439 (miRBase rno-mir-337) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10439: 0.001 randfold mouseZ12p82_sblock10439: 0.001 #forester mouseZ12p82_sblock10439: 0.918394 #identity: 100.00 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT1S1 20 342 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT1S1 21 297 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT1S1 22 265 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT1S2 20 243 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT1S2 21 233 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT1S2 22 168 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT1S1 18 127 sblock10439 CGGCGTCATGCAGGAGTTG #rat_gr399068_libT1S1 19 110 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT1S2 18 97 sblock10439 CGGCGTCATGCAGGAGTTG #rat_gr399068_libT1S2 19 85 sblock10439 GAACGGCGTCATGCAGGAGTTG #rat_gr483716_libT1S1 22 31 sblock10439 GAACGGCGTCATGCAGGAGT #rat_gr483714_libT1S1 20 29 sblock10439 GAACGGCGTCATGCAGGAGT #rat_gr483714_libT1S2 20 27 sblock10439 AACGGCGTCATGCAGGAGTTG #rat_gr36658_libT1S1 21 25 sblock10439 GAACGGCGTCATGCAGGAG #rat_gr483713_libT1S2 19 24 sblock10439 GAACGGCGTCATGCAGGAGTTG #rat_gr483716_libT1S2 22 23 sblock10439 GAACGGCGTCATGCAGGAGTT #rat_gr483715_libT1S1 21 19 sblock10439 AACGGCGTCATGCAGGAGT #rat_gr36656_libT1S2 19 17 sblock10439 GAACGGCGTCATGCAGGAG #rat_gr483713_libT1S1 19 16 sblock10439 AACGGCGTCATGCAGGAGTT #rat_gr36657_libT1S1 20 15 sblock10439 AACGGCGTCATGCAGGAGTTG #rat_gr36658_libT1S2 21 15 sblock10439 AACGGCGTCATGCAGGAGTTGA #rat_gr36659_libT1S1 22 15 sblock10439 AACGGCGTCATGCAGGAG #rat_gr36655_libT1S2 18 14 sblock10439 AACGGCGTCATGCAGGAGT #rat_gr36656_libT1S1 19 14 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT3S1 20 14 sblock10439 GAACGGCGTCATGCAGGAGTTGA #rat_gr483717_libT1S2 23 12 sblock10439 AACGGCGTCATGCAGGAGTT #rat_gr36657_libT1S2 20 12 sblock10439 GAACGGCGTCATGCAGGAGTTGA #rat_gr483717_libT1S1 23 11 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT2S1 20 11 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT3S2 22 11 sblock10439 GAACGGCGTCATGCAGGA #rat_gr483712_libT1S2 18 10 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT3S1 22 9 sblock10439 GGAACGGCGTCATGCAGGAGT #rat_gr581472_libT1S1 21 8 sblock10439 GGAACGGCGTCATGCAGGAGTT #rat_gr581473_libT1S1 22 8 sblock10439 GAACGGCGTCATGCAGGAGTT #rat_gr483715_libT1S2 21 8 sblock10439 AACGGCGTCATGCAGGAG #rat_gr36655_libT1S1 18 8 sblock10439 AACGGCGTCATGCAGGAGTTGA #rat_gr36659_libT1S2 22 8 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT3S2 21 8 sblock10439 GGAACGGCGTCATGCAGGAGT #rat_gr581472_libT1S2 21 7 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT3S1 18 7 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT3S2 20 6 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT5S2 20 6 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT2S1 22 6 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT5S2 22 6 sblock10439 GAACGGCGTCATGCAGGA #rat_gr483712_libT1S1 18 5 sblock10439 CGGCGTCATGCAGGAGTTG #rat_gr399068_libT2S2 19 5 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT2S2 20 5 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT4S1 20 5 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT4S1 22 5 sblock10439 CGGCGTCATGCAGGAGTTGATTGC #rat_gr399073_libT1S1 24 5 sblock10439 GGAACGGCGTCATGCAGG #rat_gr581469_libT1S1 18 4 sblock10439 ACGGCGTCATGCAGGAGT #rat_gr113077_libT1S2 18 4 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT3S2 18 4 sblock10439 GGCGTCATGCAGGAGTTG #rat_gr598199_libT1S2 18 4 sblock10439 GGAACGGCGTCATGCAGGAG #rat_gr581471_libT1S1 20 3 sblock10439 GGAACGGCGTCATGCAGGAGTT #rat_gr581473_libT1S2 22 3 sblock10439 CGGCGTCATGCAGGAGTTG #rat_gr399068_libT2S1 19 3 sblock10439 CGGCGTCATGCAGGAGTTGA #rat_gr399069_libT4S2 20 3 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT2S1 21 3 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT3S1 21 3 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT4S1 21 3 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT2S2 22 3 sblock10439 GGAACGGCGTCATGCAGGAG #rat_gr581471_libT1S2 20 2 sblock10439 ACGGCGTCATGCAGGAGT #rat_gr113077_libT1S1 18 2 sblock10439 ACGGCGTCATGCAGGAGTTG #rat_gr113079_libT1S2 20 2 sblock10439 ACGGCGTCATGCAGGAGTTGA #rat_gr113080_libT1S1 21 2 sblock10439 ACGGCGTCATGCAGGAGTTGA #rat_gr113080_libT1S2 21 2 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT2S1 18 2 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT4S2 18 2 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT2S2 21 2 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT4S2 21 2 sblock10439 CGGCGTCATGCAGGAGTTGATTGC #rat_gr399073_libT1S2 24 2 sblock10439 GGCGTCATGCAGGAGTTGA #rat_gr598200_libT1S1 19 2 sblock10439 GGCGTCATGCAGGAGTTGA #rat_gr598200_libT1S2 19 2 sblock10439 GGCGTCATGCAGGAGTTGAT #rat_gr598201_libT1S1 20 2 sblock10439 GGCGTCATGCAGGAGTTGAT #rat_gr598201_libT1S2 20 2 sblock10439 GGCGTCATGCAGGAGTTGATT #rat_gr598202_libT1S2 21 2 sblock10439 GGAACGGCGTCATGCAGGA #rat_gr581470_libT1S1 19 1 sblock10439 GAACGGCGTCATGCAGGAGT #rat_gr483714_libT3S2 20 1 sblock10439 GAACGGCGTCATGCAGGAGTTGA #rat_gr483717_libT3S2 23 1 sblock10439 AACGGCGTCATGCAGGAGT #rat_gr36656_libT3S2 19 1 sblock10439 AACGGCGTCATGCAGGAGTT #rat_gr36657_libT4S2 20 1 sblock10439 AACGGCGTCATGCAGGAGTTG #rat_gr36658_libT2S2 21 1 sblock10439 AACGGCGTCATGCAGGAGTTGA #rat_gr36659_libT3S1 22 1 sblock10439 AACGGCGTCATGCAGGAGTTGA #rat_gr36659_libT3S2 22 1 sblock10439 ACGGCGTCATGCAGGAGTT #rat_gr113078_libT1S1 19 1 sblock10439 ACGGCGTCATGCAGGAGTT #rat_gr113078_libT1S2 19 1 sblock10439 ACGGCGTCATGCAGGAGTTG #rat_gr113079_libT1S1 20 1 sblock10439 ACGGCGTCATGCAGGAGTTGA #rat_gr113080_libT3S1 21 1 sblock10439 ACGGCGTCATGCAGGAGTTGA #rat_gr113080_libT3S2 21 1 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT2S2 18 1 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT5S1 18 1 sblock10439 CGGCGTCATGCAGGAGTT #rat_gr399067_libT5S2 18 1 sblock10439 CGGCGTCATGCAGGAGTTG #rat_gr399068_libT4S1 19 1 sblock10439 CGGCGTCATGCAGGAGTTGAT #rat_gr399070_libT5S2 21 1 sblock10439 CGGCGTCATGCAGGAGTTGATT #rat_gr399071_libT4S2 22 1 sblock10439 CGGCGTCATGCAGGAGTTGATTG #rat_gr399072_libT1S2 23 1 sblock10439 CGGCGTCATGCAGGAGTTGATTGC #rat_gr399073_libT3S1 24 1 sblock10439 GGCGTCATGCAGGAGTTGATT #rat_gr598202_libT1S1 21 1 sblock10439 GGCGTCATGCAGGAGTTGATTG #rat_gr598203_libT1S1 22 1 sblock10439 GGCGTCATGCAGGAGTTGATTGC #rat_gr598204_libT1S1 23 1 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT1S1 19 413 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT1S1 20 413 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT1S2 20 383 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT1S1 23 368 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT1S2 23 346 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT1S2 19 326 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT1S1 21 305 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT1S2 21 282 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT1S2 21 78 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT1S1 21 76 sblock10439 TTCAGCTCCTATATGATGCC #rat_gr1112149_libT1S1 20 70 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT1S1 18 61 sblock10439 AGCTCCTATATGATGCCT #rat_gr164718_libT1S1 18 56 sblock10439 TTCAGCTCCTATATGATGCC #rat_gr1112149_libT1S2 20 55 sblock10439 AGCTCCTATATGATGCCT #rat_gr164718_libT1S2 18 49 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT1S2 18 37 sblock10439 TTCAGCTCCTATATGATGC #rat_gr1112148_libT1S1 19 28 sblock10439 TTCAGCTCCTATATGATGC #rat_gr1112148_libT1S2 19 25 sblock10439 TCAGCTCCTATATGATGCCTTT #rat_gr818518_libT1S2 22 23 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT3S1 20 15 sblock10439 TCAGCTCCTATATGATGCCTTT #rat_gr818518_libT1S1 22 15 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT3S2 23 15 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT3S1 19 14 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT4S2 20 12 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT3S2 19 11 sblock10439 TTCAGCTCCTATATGATG #rat_gr1112147_libT1S1 18 9 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT5S2 19 9 sblock10439 AGCTCCTATATGATGCCTTTCT #rat_gr164722_libT1S1 22 9 sblock10439 TTCAGCTCCTATATGATGCCTT #rat_gr1112151_libT1S1 22 8 sblock10439 TTCAGCTCCTATATGATGCCTTTC #rat_gr1112153_libT1S1 24 8 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT3S2 20 8 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT3S1 23 8 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT4S1 23 8 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT4S2 23 8 sblock10439 TTCAGCTCCTATATGATG #rat_gr1112147_libT1S2 18 7 sblock10439 TTCAGCTCCTATATGATGCCTT #rat_gr1112151_libT1S2 22 7 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT2S1 19 7 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT4S1 20 7 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT4S2 19 6 sblock10439 CAGCTCCTATATGATGCCTTTC #rat_gr295493_libT1S2 22 6 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT4S1 19 5 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT2S1 20 5 sblock10439 AGCTCCTATATGATGCCTT #rat_gr164719_libT1S1 19 5 sblock10439 AGCTCCTATATGATGCCTT #rat_gr164719_libT1S2 19 5 sblock10439 AGCTCCTATATGATGCCTTTCT #rat_gr164722_libT1S2 22 5 sblock10439 TTCAGCTCCTATATGATGCCTTTC #rat_gr1112153_libT1S2 24 4 sblock10439 CAGCTCCTATATGATGCC #rat_gr295489_libT1S2 18 4 sblock10439 TTCAGCTCCTATATGATGCC #rat_gr1112149_libT3S2 20 3 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT4S1 21 3 sblock10439 TTCAGCTCCTATATGATGCCTTT #rat_gr1112152_libT1S1 23 3 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT3S2 18 3 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT2S2 19 3 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT5S2 20 3 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT2S1 23 3 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT2S2 23 3 sblock10439 AGCTCCTATATGATGCCTTTC #rat_gr164721_libT1S1 21 3 sblock10439 AGCTCCTATATGATGCCTTTC #rat_gr164721_libT1S2 21 3 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT2S1 21 2 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT3S1 21 2 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT3S2 21 2 sblock10439 TTCAGCTCCTATATGATGCCT #rat_gr1112150_libT4S2 21 2 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT2S2 18 2 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT2S2 20 2 sblock10439 TCAGCTCCTATATGATGCCT #rat_gr818516_libT5S1 20 2 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT2S1 21 2 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT5S2 23 2 sblock10439 CAGCTCCTATATGATGCC #rat_gr295489_libT1S1 18 2 sblock10439 CAGCTCCTATATGATGCCT #rat_gr295490_libT1S1 19 2 sblock10439 CAGCTCCTATATGATGCCTT #rat_gr295491_libT1S1 20 2 sblock10439 AGCTCCTATATGATGCCTTT #rat_gr164720_libT1S2 20 2 sblock10439 TCCTATATGATGCCTTTCTTC #rat_gr870442_libT1S2 21 2 sblock10439 GCACAGCCATTCAGCTCCT #rat_gr529165_libT1S2 19 1 sblock10439 AGCCATTCAGCTCCTATATGAT #rat_gr158091_libT1S1 22 1 sblock10439 TTCAGCTCCTATATGATG #rat_gr1112147_libT4S1 18 1 sblock10439 TTCAGCTCCTATATGATGC #rat_gr1112148_libT3S2 19 1 sblock10439 TTCAGCTCCTATATGATGC #rat_gr1112148_libT4S1 19 1 sblock10439 TTCAGCTCCTATATGATGCC #rat_gr1112149_libT2S1 20 1 sblock10439 TTCAGCTCCTATATGATGCC #rat_gr1112149_libT4S2 20 1 sblock10439 TTCAGCTCCTATATGATGCCTT #rat_gr1112151_libT3S2 22 1 sblock10439 TTCAGCTCCTATATGATGCCTTT #rat_gr1112152_libMirbase_rno-miR-337 23 1 sblock10439 TTCAGCTCCTATATGATGCCTTT #rat_gr1112152_libT1S2 23 1 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT2S1 18 1 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT3S1 18 1 sblock10439 TCAGCTCCTATATGATGC #rat_gr818514_libT4S2 18 1 sblock10439 TCAGCTCCTATATGATGCC #rat_gr818515_libT5S1 19 1 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT3S1 21 1 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT3S2 21 1 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT4S1 21 1 sblock10439 TCAGCTCCTATATGATGCCTT #rat_gr818517_libT5S2 21 1 sblock10439 TCAGCTCCTATATGATGCCTTT #rat_gr818518_libT2S2 22 1 sblock10439 TCAGCTCCTATATGATGCCTTT #rat_gr818518_libT3S2 22 1 sblock10439 TCAGCTCCTATATGATGCCTTTC #rat_gr818519_libT5S1 23 1 sblock10439 CAGCTCCTATATGATGCCTT #rat_gr295491_libT1S2 20 1 sblock10439 CAGCTCCTATATGATGCCTTT #rat_gr295492_libT1S2 21 1 sblock10439 CAGCTCCTATATGATGCCTTTC #rat_gr295493_libT1S1 22 1 sblock10439 CAGCTCCTATATGATGCCTTTC #rat_gr295493_libT3S1 22 1 sblock10439 AGCTCCTATATGATGCCT #rat_gr164718_libT2S1 18 1 sblock10439 AGCTCCTATATGATGCCTT #rat_gr164719_libT4S1 19 1 sblock10439 AGCTCCTATATGATGCCTTT #rat_gr164720_libT5S1 20 1 sblock10439 AGCTCCTATATGATGCCTTTCTT #rat_gr164723_libT1S2 23 1 sblock10439 AGCTCCTATATGATGCCTTTCTTC #rat_gr164724_libT1S1 24 1 sblock10439 CTCCTATATGATGCCTTTC #rat_gr425172_libT1S2 19 1 sblock10439 CTCCTATATGATGCCTTTCTTC #rat_gr425173_libT1S1 22 1 sblock10439 ---------------AGTGTAGTGAGAAGTTGGGGGGTGGGAACGGCGTCATGCAGGAGTTGATTGCACAGCCATTCAGCTCCTATATGATGCCTTTCTTCACCCCCTTCAA-------------------- mouseZ12p82 GGAGAGGAGGGTCCCAGTGTAGTGAGAAGTTGGGGGGTGGGAACGGCGTCATGCAGGAGTTGATTGCACAGCCATTCAGCTCCTATATGATGCCTTTCTTCACCCCCTTCAACCGCGTGAGGCCTCCGGACC ************************************************************************************************* sblock10439 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053650 ENSRNOG00000035527 rno-mir-337 sblock10439 .............(..((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).))).))))))))).).. 1.000 -49.60 # mouseZ12p82 ((...(((((..(((((((...(((......((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).)))).)))))))))))..))).)).)))))))...)) 0.999 -64.70 # #sblock10439 chromosome:6:134176751:134176847:1 Same_strand|Exonic_non-coding|ENSRNOT00000053650|ENSRNOG00000035527 ## ENSRNOG00000035527|miRNA|rno-mir-337|rno-mir-337 [Source:miRBase;Acc:MI0000614] ## {MIR: rno-mir-337} #mouseZ12p82 chromosome:12:110823985:110824116:1 Same_strand|Boundary_non-coding|ENSMUST00000083592|ENSMUSG00000065526|miRNA|mmu-mir-337 [Source:miRBase;Acc:MI0000615] ## {MIR: mmu-mir-337} ========== sblock10444 (miRBase rno-mir-434) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10444: 0.002 randfold mouse31p82_sblock10444: 0.001 #forester mouse31p82_sblock10444: 0.865693 #identity: 90.32 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT1S1 22 854 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT1S1 23 818 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT1S2 22 659 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT1S2 23 626 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT1S1 19 517 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT1S2 19 422 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT1S1 22 315 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT1S1 21 250 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT1S1 18 230 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT1S2 22 227 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT1S2 21 207 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT1S2 18 205 sblock10444 AGCTCGACTCATGGTTTGAAC #rat_gr164841_libT1S1 21 169 sblock10444 AGCTCGACTCATGGTTTGAAC #rat_gr164841_libT1S2 21 160 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT1S1 20 105 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT1S1 18 105 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT1S2 18 84 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT1S1 20 82 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT1S2 20 72 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT1S2 20 67 sblock10444 GCTCGACTCATGGTTTGAA #rat_gr569758_libT1S1 19 53 sblock10444 GCTCGACTCATGGTTTGAA #rat_gr569758_libT1S2 19 45 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT2S1 22 8 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT3S1 22 8 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT3S2 22 8 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT3S2 21 7 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT3S2 22 7 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT4S2 19 5 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT5S2 22 5 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT3S1 18 4 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT3S1 19 4 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT3S1 22 4 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT3S2 18 3 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT4S2 22 3 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT2S1 21 3 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT4S1 18 2 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT4S2 18 2 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT5S2 18 2 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT2S2 19 2 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT3S2 19 2 sblock10444 AGCTCGACTCATGGTTTGAAC #rat_gr164841_libT3S1 21 2 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT2S2 22 2 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT5S1 22 2 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT3S1 23 2 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT5S1 23 2 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT3S1 21 2 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT4S2 21 2 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT5S1 22 2 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT5S2 22 2 sblock10444 CTCGACTCATGGTTTGAACCA #rat_gr427461_libT1S1 21 2 sblock10444 AGCTCGACTCATGGTTTG #rat_gr164838_libT5S1 18 1 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT2S1 19 1 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT4S1 19 1 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT5S1 19 1 sblock10444 AGCTCGACTCATGGTTTGA #rat_gr164839_libT5S2 19 1 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT3S2 20 1 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT4S1 20 1 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT4S2 20 1 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT5S1 20 1 sblock10444 AGCTCGACTCATGGTTTGAA #rat_gr164840_libT5S2 20 1 sblock10444 AGCTCGACTCATGGTTTGAAC #rat_gr164841_libT2S1 21 1 sblock10444 AGCTCGACTCATGGTTTGAAC #rat_gr164841_libT3S2 21 1 sblock10444 AGCTCGACTCATGGTTTGAACC #rat_gr164842_libT4S1 22 1 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT2S1 23 1 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT2S2 23 1 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT3S2 23 1 sblock10444 AGCTCGACTCATGGTTTGAACCA #rat_gr164843_libT5S2 23 1 sblock10444 AGCTCGACTCATGGTTTGAACCAT #rat_gr164844_libT1S2 24 1 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT2S1 18 1 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT2S2 18 1 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT3S1 18 1 sblock10444 GCTCGACTCATGGTTTGA #rat_gr569757_libT5S2 18 1 sblock10444 GCTCGACTCATGGTTTGAA #rat_gr569758_libT2S1 19 1 sblock10444 GCTCGACTCATGGTTTGAA #rat_gr569758_libT5S2 19 1 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT2S2 20 1 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT3S1 20 1 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT4S1 20 1 sblock10444 GCTCGACTCATGGTTTGAAC #rat_gr569759_libT5S1 20 1 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT2S2 21 1 sblock10444 GCTCGACTCATGGTTTGAACC #rat_gr569760_libT4S1 21 1 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT2S1 22 1 sblock10444 GCTCGACTCATGGTTTGAACCA #rat_gr569761_libT4S1 22 1 sblock10444 CTCGACTCATGGTTTGAACC #rat_gr427460_libT1S1 20 1 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT1S1 22 7454 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT1S2 22 5936 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT1S1 18 4154 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT1S2 18 3218 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT1S1 21 1729 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT1S2 21 1347 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT1S1 20 494 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT1S2 20 369 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT1S1 21 311 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT1S1 19 288 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT1S2 21 218 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT1S2 19 151 sblock10444 TTTGAACCATCACTCGACTCCTG #rat_gr1167322_libT1S1 23 57 sblock10444 TTGAACCATCACTCGACTCC #rat_gr1131565_libT1S1 20 55 sblock10444 TTGAACCATCACTCGACTCC #rat_gr1131565_libT1S2 20 51 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT3S1 22 44 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT2S1 22 42 sblock10444 GTTTGAACCATCACTCGACTCC #rat_gr664231_libT1S1 22 38 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT2S1 18 38 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT4S2 22 36 sblock10444 TTTGAACCATCACTCGACTCCTG #rat_gr1167322_libT1S2 23 35 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT3S2 22 34 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT4S1 22 34 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT4S2 18 26 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT5S2 22 25 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT3S2 18 23 sblock10444 GTTTGAACCATCACTCGAC #rat_gr664228_libT1S2 19 22 sblock10444 GTTTGAACCATCACTCGACTCC #rat_gr664231_libT1S2 22 21 sblock10444 GTTTGAACCATCACTCGACTCCT #rat_gr664232_libT1S1 23 21 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT3S1 18 21 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT5S1 22 21 sblock10444 GTTTGAACCATCACTCGAC #rat_gr664228_libT1S1 19 20 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT3S2 21 20 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT2S1 21 15 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT4S1 21 14 sblock10444 TTGAACCATCACTCGACTC #rat_gr1131564_libT1S1 19 14 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT4S1 18 13 sblock10444 GTTTGAACCATCACTCGACTCCT #rat_gr664232_libT1S2 23 12 sblock10444 TTGAACCATCACTCGACTC #rat_gr1131564_libT1S2 19 12 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT5S2 18 11 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libT2S2 22 11 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT2S2 18 10 sblock10444 TTTGAACCATCACTCGAC #rat_gr1167317_libT5S1 18 9 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT3S2 20 9 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT4S2 21 9 sblock10444 TTGAACCATCACTCGACT #rat_gr1131563_libT1S2 18 9 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT3S1 21 8 sblock10444 TTTGAACCATCACTCGACTCCTGG #rat_gr1167323_libT1S1 24 8 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT3S2 19 7 sblock10444 TTGAACCATCACTCGACT #rat_gr1131563_libT1S1 18 7 sblock10444 GTTTGAACCATCACTCGACTC #rat_gr664230_libT1S2 21 5 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT3S1 19 5 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT2S1 20 5 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT2S2 21 5 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT5S1 21 5 sblock10444 GAACCATCACTCGACTCCT #rat_gr482878_libT1S2 19 5 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT5S2 19 4 sblock10444 GAACCATCACTCGACTCCT #rat_gr482878_libT1S1 19 4 sblock10444 GTTTGAACCATCACTCGACT #rat_gr664229_libT1S2 20 3 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT2S1 19 3 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT4S1 20 3 sblock10444 TGAACCATCACTCGACTCC #rat_gr925269_libT1S1 19 3 sblock10444 TGAACCATCACTCGACTCCT #rat_gr925270_libT1S1 20 3 sblock10444 TGAACCATCACTCGACTCCT #rat_gr925270_libT1S2 20 3 sblock10444 GTTTGAACCATCACTCGA #rat_gr664227_libT1S1 18 2 sblock10444 GTTTGAACCATCACTCGACT #rat_gr664229_libT1S1 20 2 sblock10444 GTTTGAACCATCACTCGACTC #rat_gr664230_libT1S1 21 2 sblock10444 GTTTGAACCATCACTCGACTC #rat_gr664230_libT3S1 21 2 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT4S2 19 2 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT2S2 20 2 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT3S1 20 2 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT4S2 20 2 sblock10444 TTTGAACCATCACTCGACTCC #rat_gr1167320_libT5S2 21 2 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT4S2 21 2 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT5S1 21 2 sblock10444 AACCATCACTCGACTCCT #rat_gr31917_libT1S2 18 2 sblock10444 GTTTGAACCATCACTCGAC #rat_gr664228_libT2S2 19 1 sblock10444 GTTTGAACCATCACTCGACTCC #rat_gr664231_libT5S2 22 1 sblock10444 GTTTGAACCATCACTCGACTCCTG #rat_gr664233_libT1S1 24 1 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT2S2 19 1 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT4S1 19 1 sblock10444 TTTGAACCATCACTCGACT #rat_gr1167318_libT5S1 19 1 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT5S1 20 1 sblock10444 TTTGAACCATCACTCGACTC #rat_gr1167319_libT5S2 20 1 sblock10444 TTTGAACCATCACTCGACTCCT #rat_gr1167321_libMirbase_rno-miR-434 22 1 sblock10444 TTTGAACCATCACTCGACTCCTG #rat_gr1167322_libT3S2 23 1 sblock10444 TTTGAACCATCACTCGACTCCTG #rat_gr1167322_libT5S1 23 1 sblock10444 TTTGAACCATCACTCGACTCCTGG #rat_gr1167323_libT1S2 24 1 sblock10444 TTTGAACCATCACTCGACTCCTGGT #rat_gr1167324_libT1S1 25 1 sblock10444 TTGAACCATCACTCGACTC #rat_gr1131564_libT5S1 19 1 sblock10444 TTGAACCATCACTCGACTCC #rat_gr1131565_libT2S1 20 1 sblock10444 TTGAACCATCACTCGACTCC #rat_gr1131565_libT3S1 20 1 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT2S1 21 1 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT4S1 21 1 sblock10444 TTGAACCATCACTCGACTCCT #rat_gr1131566_libT5S2 21 1 sblock10444 TGAACCATCACTCGACTC #rat_gr925268_libT1S1 18 1 sblock10444 TGAACCATCACTCGACTCC #rat_gr925269_libT1S2 19 1 sblock10444 GAACCATCACTCGACTCC #rat_gr482877_libT1S1 18 1 sblock10444 GAACCATCACTCGACTCC #rat_gr482877_libT1S2 18 1 sblock10444 GTTTGAACCACAGCTCGACTCATGGTTTGAACCATTGTCAAACTCGTGGTTTGAACCATCACTCGACTCCTGGTTTGAATC mouse31p82 ---------AAAGCTCGACTCATGGTTTGAACCATTACTTAATTCGTGGTTTGAACCATCACTCGACTCCT---------- * ************************* ** **************************** sblock10444 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000062197 ENSRNOG00000040444 rno-mir-434 sblock10444 (((..(((((.((.((((.(.((((((..((((((.(.....)..))))))..)))))).).))))))..)))))..))). 1.000 -29.80 # mouse31p82 ..((.((((...((((((..((((((..........))))))..))))))...))))))... 1.000 -20.20 # #sblock10444 chromosome:6:134186260:134186340:1 Same_strand|Exonic_non-coding|ENSRNOT00000062197|ENSRNOG00000040444 ## Same_strand|Boundary_non-coding|ENSRNOT00000062197|ENSRNOG00000040444 ## ENSRNOG00000040444|miRNA|rno-mir-434|rno-mir-434 [Source:miRBase;Acc:MI0006147] ## {Repeats: trf 87 109 0 class=trf,trf 22 48 0 class=trf,trf 61 85 0 class=trf} ## {MIR: rno-mir-434} #mouse31p82 chromosome:12:110832706:110832826:1 Opposite_strand|Exonic_coding|ENSMUST00000118502|ENSMUSG00000081425|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q7M732] ## Same_strand|Boundary_non-coding|ENSMUST00000093625|ENSMUSG00000070133|miRNA|mmu-mir-434 [Source:miRBase;Acc:MI0001526] ## {Repeats: trf 0 class=trf} ## {MIR: mmu-mir-434} ========== sblock10488 (miRBase rno-mir-379) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10488: 0.001 randfold humanZ28p82_sblock10488: 0.001 randfold mouseZ46p82_sblock10488: 0.001 #forester humanZ28p82_sblock10488: 0.97502 forester mouseZ46p82_sblock10488: 0.980143 #identity: 98.81 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT1S1 20 1129 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT1S2 20 804 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT1S1 21 565 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT1S1 22 562 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT1S2 21 344 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT1S2 22 315 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT1S1 19 314 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT1S1 18 273 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT1S2 19 260 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT1S2 18 197 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT3S2 20 32 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT3S1 20 30 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT5S2 20 28 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT5S2 21 28 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT3S2 21 23 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT3S1 22 22 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT2S1 20 19 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT3S1 21 18 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT3S2 19 16 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT4S1 20 14 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT3S1 19 13 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT3S2 18 12 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT3S2 22 12 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT2S1 21 11 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT4S1 21 11 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT5S1 21 11 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT5S2 18 10 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT5S2 22 10 sblock10488 GGTAGACTATGGAACGTAGGC #rat_gr618283_libT1S1 21 10 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT5S2 19 9 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT2S2 20 9 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT5S1 20 9 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT2S1 18 8 sblock10488 GGTAGACTATGGAACGTAGG #rat_gr618282_libT1S1 20 8 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT4S2 21 7 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT5S1 19 6 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT4S2 22 6 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT4S1 19 5 sblock10488 TGGTAGACTATGGAACGTAG #rat_gr1062110_libT4S2 20 5 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libT2S2 21 5 sblock10488 GGTAGACTATGGAACGTAG #rat_gr618281_libT1S2 19 5 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT3S1 18 4 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT2S1 19 4 sblock10488 GGTAGACTATGGAACGTAG #rat_gr618281_libT1S1 19 4 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT2S2 19 3 sblock10488 TGGTAGACTATGGAACGTAGGCG #rat_gr1062113_libT1S2 23 3 sblock10488 GGTAGACTATGGAACGTA #rat_gr618280_libT1S2 18 3 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT4S1 18 2 sblock10488 GGTAGACTATGGAACGTAGGC #rat_gr618283_libT1S2 21 2 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT2S2 18 1 sblock10488 TGGTAGACTATGGAACGT #rat_gr1062108_libT5S1 18 1 sblock10488 TGGTAGACTATGGAACGTA #rat_gr1062109_libT4S2 19 1 sblock10488 TGGTAGACTATGGAACGTAGG #rat_gr1062111_libMirbase_rno-miR-379 21 1 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT2S1 22 1 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT4S1 22 1 sblock10488 TGGTAGACTATGGAACGTAGGC #rat_gr1062112_libT5S1 22 1 sblock10488 TGGTAGACTATGGAACGTAGGCG #rat_gr1062113_libT1S1 23 1 sblock10488 GGTAGACTATGGAACGTA #rat_gr618280_libT1S1 18 1 sblock10488 GGTAGACTATGGAACGTAGG #rat_gr618282_libT1S2 20 1 sblock10488 GGTAGACTATGGAACGTAGGCG #rat_gr618284_libT5S2 22 1 sblock10488 AGACTATGGAACGTAGGC #rat_gr139890_libT1S1 18 1 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT1S1 21 289 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT1S2 21 226 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT1S1 19 64 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT1S2 19 63 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT1S1 23 54 sblock10488 TATGTAACATGGTCCACT #rat_gr797682_libT1S1 18 42 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT1S1 20 41 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT1S2 23 34 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT1S2 20 31 sblock10488 TATGTAACATGGTCCACT #rat_gr797682_libT1S2 18 25 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT3S1 21 13 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT3S2 21 9 sblock10488 ATGTAACATGGTCCACTAAC #rat_gr235883_libT1S2 20 9 sblock10488 ATGTAACATGGTCCACTAAC #rat_gr235883_libT1S1 20 7 sblock10488 ATGTAACATGGTCCACTA #rat_gr235882_libT1S2 18 4 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT3S1 19 3 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT4S1 21 3 sblock10488 TATGTAACATGGTCCACTAACT #rat_gr797686_libT1S1 22 3 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT3S1 23 3 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT3S2 19 2 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT5S2 19 2 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT4S2 21 2 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT5S1 21 2 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT5S2 21 2 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT2S1 23 2 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT4S1 23 2 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT4S2 23 2 sblock10488 ATGTAACATGGTCCACTAACTC #rat_gr235884_libT1S1 22 2 sblock10488 GTAACATGGTCCACTAAC #rat_gr627297_libT1S1 18 2 sblock10488 CTATGTAACATGGTCCAC #rat_gr415473_libT1S2 18 1 sblock10488 CTATGTAACATGGTCCACTAAC #rat_gr415474_libMirbase_rno-miR-379* 22 1 sblock10488 CTATGTAACATGGTCCACTAAC #rat_gr415474_libT1S1 22 1 sblock10488 TATGTAACATGGTCCACT #rat_gr797682_libT3S1 18 1 sblock10488 TATGTAACATGGTCCACTA #rat_gr797683_libT5S1 19 1 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT2S1 20 1 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT3S1 20 1 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT3S2 20 1 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT4S1 20 1 sblock10488 TATGTAACATGGTCCACTAA #rat_gr797684_libT4S2 20 1 sblock10488 TATGTAACATGGTCCACTAAC #rat_gr797685_libT2S1 21 1 sblock10488 TATGTAACATGGTCCACTAACT #rat_gr797686_libT1S2 22 1 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT3S2 23 1 sblock10488 TATGTAACATGGTCCACTAACTC #rat_gr797687_libT5S2 23 1 sblock10488 ATGTAACATGGTCCACTA #rat_gr235882_libT2S2 18 1 sblock10488 ATGTAACATGGTCCACTAACTC #rat_gr235884_libT1S2 22 1 sblock10488 TGGTTCCTGCAGAGGTGGTAGACTATGGAACGTAGGCGTTATG-TTTCTGACCTATGTAACATGGTCCACTAACTCTCAGTATCCA humanZ28p82 ---------------TGGTAGACTATGGAACGTAGGCGTTATGATTTCTGACCTATGTAACATGGTCCACTA-------------- mouseZ46p82 ---------------TGGTAGACTATGGAACGTAGGCGTTATG-TTTTTGACCTATGTAACATGGTCCACTA-------------- **************************** *** ************************ sblock10488 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053679 ENSRNOG00000035556 rno-mir-379 sblock10488 .((...(((.((((.((((.(((((((..(((((((((..... ....)).)))))))..))))))).)))).)))))))...)). 1.000 -33.60 # humanZ28p82 ((((.(((((((..(((((((((..........)).)))))))..))))))).)))) 1.000 -21.00 # mouseZ46p82 ((((.(((((((..(((((((((..... ....)).)))))))..))))))).)))) 1.000 -21.90 # #sblock10488 chromosome:6:134388198:134388282:1 Same_strand|Exonic_non-coding|ENSRNOT00000053679|ENSRNOG00000035556 ## ENSRNOG00000035556|miRNA|rno-mir-379|rno-mir-379 [Source:miRBase;Acc:MI0003541] ## {MIR: rno-mir-379} #humanZ28p82 chromosome:14:100558126:100558250:1 Same_strand|Boundary_non-coding|ENST00000362218|ENSG00000199088|miRNA|hsa-mir-379 [Source:miRBase;Acc:MI0000787] ## {MIR: hsa-mir-379} #mouseZ46p82 chromosome:12:110947240:110947364:1 Same_strand|Boundary_non-coding|ENSMUST00000083564|ENSMUSG00000065498|miRNA|mmu-mir-379 [Source:miRBase;Acc:MI0000796] ## {MIR: mmu-mir-379} ========== sblock10489 (miRBase rno-mir-411) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10489: 0.007 randfold humanZ31p82_sblock10489: 0.001 randfold mouseZ48p82_sblock10489: 0.008 #forester humanZ31p82_sblock10489: 1 forester mouseZ48p82_sblock10489: 1 #identity: 99.62 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT1S1 21 141 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT1S1 19 132 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT1S1 20 123 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT1S1 19 75 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT1S1 18 59 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT1S1 20 42 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT1S1 22 27 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT1S2 19 26 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT1S1 18 20 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT1S2 18 17 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT1S2 21 17 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT1S1 19 17 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT1S2 20 12 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT5S2 20 11 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT3S2 19 10 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT3S1 19 8 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT1S2 20 8 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT3S1 21 7 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT5S2 21 7 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT5S2 19 6 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT2S1 20 6 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT3S2 21 5 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT5S1 21 5 sblock10489 ATAGTAGACCGTATAGCGTACGC #rat_gr210519_libT1S1 23 5 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT4S1 20 5 sblock10489 TAGTAGACCGTATAGCGTACG #rat_gr784487_libT1S1 21 5 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT1S2 19 5 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT3S1 18 4 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT5S2 18 4 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT5S1 19 4 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT1S2 18 4 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT2S1 19 4 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT2S2 20 4 sblock10489 AGTAGACCGTATAGCGTA #rat_gr195314_libT1S1 18 4 sblock10489 AGTAGACCGTATAGCGTA #rat_gr195314_libT1S2 18 4 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT3S2 18 3 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT4S2 19 3 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT5S2 19 3 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT5S2 22 3 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT3S1 20 3 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT3S2 20 3 sblock10489 TAGTAGACCGTATAGCGTAC #rat_gr784486_libT5S1 20 3 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT5S2 19 3 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT4S1 21 2 sblock10489 ATAGTAGACCGTATAGCGTAC #rat_gr210517_libT4S2 21 2 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT4S2 22 2 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT1S2 19 2 sblock10489 TAGTAGACCGTATAGCGTACG #rat_gr784487_libT5S1 21 2 sblock10489 TAGTAGACCGTATAGCGTACGC #rat_gr784488_libT1S1 22 2 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT3S1 19 2 sblock10489 AGTAGACCGTATAGCGTACG #rat_gr195316_libT1S1 20 2 sblock10489 AGTAGACCGTATAGCGTACGC #rat_gr195317_libT1S1 21 2 sblock10489 ATAGTAGACCGTATAGCG #rat_gr210514_libT5S1 18 1 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT2S1 19 1 sblock10489 ATAGTAGACCGTATAGCGT #rat_gr210515_libT4S1 19 1 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT2S1 20 1 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT3S2 20 1 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT4S1 20 1 sblock10489 ATAGTAGACCGTATAGCGTA #rat_gr210516_libT5S2 20 1 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT2S2 22 1 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT3S1 22 1 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT4S1 22 1 sblock10489 ATAGTAGACCGTATAGCGTACG #rat_gr210518_libT5S1 22 1 sblock10489 ATAGTAGACCGTATAGCGTACGC #rat_gr210519_libT2S1 23 1 sblock10489 ATAGTAGACCGTATAGCGTACGC #rat_gr210519_libT2S2 23 1 sblock10489 ATAGTAGACCGTATAGCGTACGC #rat_gr210519_libT5S2 23 1 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT2S1 18 1 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT2S2 18 1 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT3S2 18 1 sblock10489 TAGTAGACCGTATAGCGT #rat_gr784484_libT5S2 18 1 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT3S2 19 1 sblock10489 TAGTAGACCGTATAGCGTA #rat_gr784485_libT4S1 19 1 sblock10489 TAGTAGACCGTATAGCGTACG #rat_gr784487_libMirbase_rno-miR-411 21 1 sblock10489 AGTAGACCGTATAGCGTA #rat_gr195314_libT5S2 18 1 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT2S1 19 1 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT4S1 19 1 sblock10489 AGTAGACCGTATAGCGTAC #rat_gr195315_libT5S1 19 1 sblock10489 AGTAGACCGTATAGCGTACG #rat_gr195316_libT5S1 20 1 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT1S1 21 582 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT1S1 22 522 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT1S2 21 508 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT1S2 22 321 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT1S1 19 264 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT1S2 19 217 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT1S1 20 134 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT1S1 18 121 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT1S2 20 101 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT1S2 18 84 sblock10489 TATGTAACACGGTCCACTAACCC #rat_gr797671_libT1S1 23 31 sblock10489 TATGTAACACGGTCCACTAACCC #rat_gr797671_libT1S2 23 24 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT3S2 22 21 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT3S2 21 19 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT3S1 21 17 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT3S1 22 16 sblock10489 ATGTAACACGGTCCACTAAC #rat_gr235874_libT1S1 20 16 sblock10489 ATGTAACACGGTCCACTAAC #rat_gr235874_libT1S2 20 13 sblock10489 ATGTAACACGGTCCACTAACC #rat_gr235875_libT1S2 21 10 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT5S2 22 9 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT5S1 21 8 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT3S2 20 7 sblock10489 ATGTAACACGGTCCACTAA #rat_gr235873_libT1S2 19 7 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT4S1 20 6 sblock10489 ATGTAACACGGTCCACTAA #rat_gr235873_libT1S1 19 6 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT3S1 19 5 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT5S2 20 5 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT4S2 21 5 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT4S1 22 5 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT4S2 22 5 sblock10489 ATGTAACACGGTCCACTA #rat_gr235872_libT1S1 18 5 sblock10489 ATGTAACACGGTCCACTA #rat_gr235872_libT1S2 18 5 sblock10489 CGTATGTAACACGGTCCACT #rat_gr403829_libT1S1 20 4 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT5S2 18 4 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT2S2 19 4 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT4S2 19 4 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT5S1 19 4 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT5S2 19 4 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT3S1 20 4 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT5S2 21 4 sblock10489 ATGTAACACGGTCCACTAACC #rat_gr235875_libT1S1 21 4 sblock10489 CGTATGTAACACGGTCCACTA #rat_gr403830_libT1S1 21 3 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT3S1 18 3 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT3S2 18 3 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT4S1 18 3 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT3S2 19 3 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT5S1 20 3 sblock10489 CGTATGTAACACGGTCCA #rat_gr403828_libT5S2 18 2 sblock10489 CGTATGTAACACGGTCCACT #rat_gr403829_libT1S2 20 2 sblock10489 GTATGTAACACGGTCCACTAAC #rat_gr631437_libT1S1 22 2 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT2S1 19 2 sblock10489 TATGTAACACGGTCCACTA #rat_gr797667_libT4S1 19 2 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT4S2 20 2 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT2S1 21 2 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT4S1 21 2 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT5S1 22 2 sblock10489 TGTGACGTATGTAACACGG #rat_gr1083509_libT5S1 19 1 sblock10489 ACGTATGTAACACGGTCC #rat_gr113699_libT1S1 18 1 sblock10489 CGTATGTAACACGGTCCACTA #rat_gr403830_libT1S2 21 1 sblock10489 CGTATGTAACACGGTCCACTAAC #rat_gr403831_libT3S2 23 1 sblock10489 CGTATGTAACACGGTCCACTAACC #rat_gr403832_libT1S1 24 1 sblock10489 GTATGTAACACGGTCCAC #rat_gr631436_libT1S1 18 1 sblock10489 TATGTAACACGGTCCACT #rat_gr797666_libT5S1 18 1 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT2S1 20 1 sblock10489 TATGTAACACGGTCCACTAA #rat_gr797668_libT2S2 20 1 sblock10489 TATGTAACACGGTCCACTAAC #rat_gr797669_libT2S2 21 1 sblock10489 TATGTAACACGGTCCACTAACC #rat_gr797670_libT2S1 22 1 sblock10489 TATGTAACACGGTCCACTAACCC #rat_gr797671_libT3S2 23 1 sblock10489 TATGTAACACGGTCCACTAACCC #rat_gr797671_libT4S2 23 1 sblock10489 TATGTAACACGGTCCACTAACCC #rat_gr797671_libT5S2 23 1 sblock10489 ATGTAACACGGTCCACTAAC #rat_gr235874_libT4S2 20 1 sblock10489 ATGTAACACGGTCCACTAACC #rat_gr235875_libT5S1 21 1 sblock10489 ATGTAACACGGTCCACTAACC #rat_gr235875_libT5S2 21 1 sblock10489 ATGTAACACGGTCCACTAACCC #rat_gr235876_libT1S1 22 1 sblock10489 TGTAACACGGTCCACTAACC #rat_gr1074455_libT1S1 20 1 sblock10489 GTAACACGGTCCACTAACC #rat_gr627209_libT1S1 19 1 sblock10489 --------------------CTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATC--------------- humanZ31p82 CTCGGCATCTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATCCCCGAG mouseZ48p82 CTCGGCGTCTCTGTGTGGTACTTGGAGAGATAGTAGACCGTATAGCGTACGCTTTATCTGTGACGTATGTAACACGGTCCACTAACCCTCAGTATCAAATCCATCCCCGAG **************************************************************************** sblock10489 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000053697 ENSRNOG00000035574 rno-mir-411 sblock10489 ....(((.(.((((.((((((.(.((((((((.........).))))))).).)))))).)))).).)))...... 1.000 -24.80 # humanZ31p82 (((((..........(((((((..(((...((((.((((((...(((((((.((.......)))))))))...)))))).))))...)))))))))).........))))) 0.970 -35.41 # mouseZ48p82 (((((..........(((((((..(((...((((.((((((...(((((((.((.......)))))))))...)))))).))))...)))))))))).........))))) 0.995 -35.41 # #sblock10489 chromosome:6:134389347:134389422:1 Same_strand|Boundary_non-coding|ENSRNOT00000053697|ENSRNOG00000035574 ## Same_strand|Exonic_non-coding|ENSRNOT00000053697|ENSRNOG00000035574 ## ENSRNOG00000035574|miRNA|rno-mir-411|rno-mir-411 [Source:miRBase;Acc:MI0006144] ## {MIR: rno-mir-411} #humanZ31p82 chromosome:14:100559400:100559510:1 Same_strand|Boundary_non-coding|ENST00000362239|ENSG00000199109|miRNA|hsa-mir-411 [Source:miRBase;Acc:MI0003675] ## {MIR: hsa-mir-411} #mouseZ48p82 chromosome:12:110948370:110948480:1 Same_strand|Boundary_non-coding|ENSMUST00000083543|ENSMUSG00000065477|miRNA|mmu-mir-411 [Source:miRBase;Acc:MI0001163] ## {MIR: mmu-mir-411} ========== sblock10490 (miRBase rno-mir-299) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10490: 0.001 randfold humanZ35p82_sblock10490: 0.001 randfold mouseZ50p82_sblock10490: 0.001 #forester humanZ35p82_sblock10490: 0.946379 forester mouseZ50p82_sblock10490: 1 #identity: 97.18 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT1S1 22 138 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT1S2 22 101 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT1S1 20 72 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT1S1 21 51 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT1S2 20 49 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT1S2 21 24 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT3S1 22 18 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT2S1 20 14 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT3S2 22 12 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT1S1 21 11 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT2S1 22 11 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT1S2 21 10 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT1S2 22 9 sblock10490 TGGTTTACCGTCCCACAT #rat_gr1070644_libT1S1 18 9 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT1S2 19 9 sblock10490 TGGTTTACCGTCCCACAT #rat_gr1070644_libT1S2 18 7 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT5S2 22 7 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT5S2 20 6 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT3S2 21 6 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT5S2 21 6 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT1S1 22 5 sblock10490 TGGTTTACCGTCCCACAT #rat_gr1070644_libT2S1 18 5 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT1S1 19 5 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT4S1 20 5 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT2S2 21 5 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT2S2 22 5 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT3S1 20 4 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT4S1 21 4 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT4S2 22 4 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT5S1 22 4 sblock10490 ATGGTTTACCGTCCCACA #rat_gr235710_libT1S1 18 3 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT2S2 20 3 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT3S2 20 3 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT2S1 21 3 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT4S2 21 3 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libT4S1 22 3 sblock10490 TGGTTTACCGTCCCACATACATT #rat_gr1070649_libT5S2 23 3 sblock10490 GGTTTACCGTCCCACATAC #rat_gr625801_libT1S2 19 3 sblock10490 ATGGTTTACCGTCCCACATA #rat_gr235713_libT1S2 20 2 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT2S2 21 2 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT5S2 21 2 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT3S2 22 2 sblock10490 TGGTTTACCGTCCCACAT #rat_gr1070644_libT3S2 18 2 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT2S1 19 2 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT5S1 19 2 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT4S2 20 2 sblock10490 TGGTTTACCGTCCCACATAC #rat_gr1070646_libT5S1 20 2 sblock10490 TGGTTTACCGTCCCACATACA #rat_gr1070647_libT3S1 21 2 sblock10490 GGTTTACCGTCCCACATAC #rat_gr625801_libT1S1 19 2 sblock10490 AATGGTTTACCGTCCCACATAC #rat_gr63838_libT1S1 22 1 sblock10490 ATGGTTTACCGTCCCACA #rat_gr235710_libT1S2 18 1 sblock10490 ATGGTTTACCGTCCCACAT #rat_gr235712_libT3S1 19 1 sblock10490 ATGGTTTACCGTCCCACAT #rat_gr235712_libT4S1 19 1 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT2S1 21 1 sblock10490 ATGGTTTACCGTCCCACATAC #rat_gr235714_libT5S1 21 1 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT2S2 22 1 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT3S1 22 1 sblock10490 ATGGTTTACCGTCCCACATACA #rat_gr235715_libT5S2 22 1 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT3S1 19 1 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT3S2 19 1 sblock10490 TGGTTTACCGTCCCACATA #rat_gr1070645_libT5S2 19 1 sblock10490 TGGTTTACCGTCCCACATACAT #rat_gr1070648_libMirbase_rno-miR-299 22 1 sblock10490 TGGTTTACCGTCCCACATACATT #rat_gr1070649_libT2S1 23 1 sblock10490 GGTTTACCGTCCCACATACAT #rat_gr625802_libT5S1 21 1 sblock10490 TTTGAGTATGTATGTGGGAC #rat_gr1168260_libT1S2 20 1 sblock10490 TATGTGGGACGGTAAACCGCT #rat_gr798307_libT1S2 21 4 sblock10490 GTATGTGGGACGGTAAACC #rat_gr631487_libT1S2 19 2 sblock10490 GTATGTGGGACGGTAAACC #rat_gr631487_libT5S2 19 2 sblock10490 GTATGTGGGACGGTAAACCG #rat_gr631489_libT1S1 20 2 sblock10490 GTATGTGGGACGGTAAACCG #rat_gr631489_libT1S2 20 2 sblock10490 GTATGTGGGACGGTAAACCGC #rat_gr631490_libT1S1 21 2 sblock10490 TATGTGGGACGGTAAACC #rat_gr798303_libT1S1 18 2 sblock10490 TATGTGGGACGGTAAACCG #rat_gr798305_libT1S1 19 2 sblock10490 GTATGTGGGACGGTAAAC #rat_gr631486_libT3S1 18 1 sblock10490 GTATGTGGGACGGTAAACC #rat_gr631487_libT1S1 19 1 sblock10490 GTATGTGGGACGGTAAACC #rat_gr631487_libT3S2 19 1 sblock10490 GTATGTGGGACGGTAAACCGC #rat_gr631490_libT5S2 21 1 sblock10490 TATGTGGGACGGTAAACC #rat_gr798303_libT1S2 18 1 sblock10490 TATGTGGGACGGTAAACCG #rat_gr798305_libT2S1 19 1 sblock10490 TATGTGGGACGGTAAACCGC #rat_gr798306_libT1S1 20 1 sblock10490 TATGTGGGACGGTAAACCGCT #rat_gr798307_libT1S1 21 1 sblock10490 TATGTGGGACGGTAAACCGCT #rat_gr798307_libT2S1 21 1 sblock10490 ------------------AAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTT--------------- humanZ35p82 ------GTGCGGTACTTGAAGAAATGGTTTACCGTCCCACATACATTTTGAATATGTATGTGGGATGGTAAACCGCTTCTTGGTATCCAGCCC--- mouseZ50p82 GCTGTCACGCGGTACTTGAAGAAATGGTTTACCGTCCCACATACATTTTGAGTATGTATGTGGGACGGTAAACCGCTTCTTGGTATCCAGCCCAGC ********************************* ************* *************** sblock10490 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053630 ENSRNOG00000035507 rno-mir-299 sblock10490 (((((.((((((((((((((((((((((.......)))))))))))))))))))))).))))) 1.000 -42.30 # humanZ35p82 .((.((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).))))))))))))).... 1.000 -47.80 # mouseZ50p82 ((((....((((((((..(((((.((((((((((((((((((((((.......)))))))))))))))))))))).))))))))).)).)).)))) 0.999 -52.60 # #sblock10490 chromosome:6:134389822:134389884:1 Same_strand|Exonic_non-coding|ENSRNOT00000053630|ENSRNOG00000035507 ## ENSRNOG00000035507|miRNA|rno-mir-299|rno-mir-299 [Source:miRBase;Acc:MI0000970] ## {MIR: rno-mir-299} #humanZ35p82 chromosome:14:100559872:100559958:1 Same_strand|Boundary_non-coding|ENST00000385016|ENSG00000207749|miRNA|hsa-mir-299 [Source:miRBase;Acc:MI0000744] ## {MIR: hsa-mir-299} #mouseZ50p82 chromosome:12:110948830:110948925:1 Same_strand|Boundary_non-coding|ENSMUST00000083616|ENSMUSG00000065550|miRNA|mmu-mir-299 [Source:miRBase;Acc:MI0000399] ## {MIR: mmu-mir-299} ========== sblock10491 (miRBase rno-mir-380) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10491: 0.001 randfold mouseZ52p82_sblock10491: 0.001 #forester mouseZ52p82_sblock10491: 1 #identity: 98.70 sblock10491 ATGGTTGACCATAGAACATGC #rat_gr235642_libT1S1 21 79 sblock10491 ATGGTTGACCATAGAACATGC #rat_gr235642_libT1S2 21 51 sblock10491 ATGGTTGACCATAGAACATG #rat_gr235641_libT1S1 20 24 sblock10491 ATGGTTGACCATAGAACATG #rat_gr235641_libT1S2 20 19 sblock10491 ATGGTTGACCATAGAACA #rat_gr235639_libT1S1 18 16 sblock10491 ATGGTTGACCATAGAACA #rat_gr235639_libT1S2 18 16 sblock10491 ATGGTTGACCATAGAACAT #rat_gr235640_libT1S1 19 14 sblock10491 ATGGTTGACCATAGAACATGCGC #rat_gr235644_libT1S2 23 8 sblock10491 ATGGTTGACCATAGAACAT #rat_gr235640_libT1S2 19 7 sblock10491 ATGGTTGACCATAGAACATGCGC #rat_gr235644_libT1S1 23 7 sblock10491 ATGGTTGACCATAGAACA #rat_gr235639_libT3S1 18 1 sblock10491 ATGGTTGACCATAGAACA #rat_gr235639_libT5S2 18 1 sblock10491 ATGGTTGACCATAGAACATGCG #rat_gr235643_libMirbase_rno-miR-380 22 1 sblock10491 ATGGTTGACCATAGAACATGCG #rat_gr235643_libT1S1 22 1 sblock10491 GGTTGACCATAGAACATG #rat_gr625288_libT1S1 18 1 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT1S1 21 455 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT1S2 21 263 sblock10491 TATGTAGTATGGTCCACA #rat_gr797832_libT1S1 18 110 sblock10491 TATGTAGTATGGTCCACA #rat_gr797832_libT1S2 18 73 sblock10491 TATGTAGTATGGTCCACATC #rat_gr797834_libT1S1 20 73 sblock10491 TATGTAGTATGGTCCACATC #rat_gr797834_libT1S2 20 38 sblock10491 TATGTAGTATGGTCCACAT #rat_gr797833_libT1S1 19 16 sblock10491 TATGTAGTATGGTCCACAT #rat_gr797833_libT1S2 19 14 sblock10491 TATGTAGTATGGTCCACATCTTC #rat_gr797837_libT1S1 23 12 sblock10491 ATGTAGTATGGTCCACATCT #rat_gr236387_libT1S1 20 9 sblock10491 TATGTAGTATGGTCCACATCTT #rat_gr797836_libT1S1 22 7 sblock10491 TATGTAGTATGGTCCACATCTTC #rat_gr797837_libT1S2 23 7 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT3S2 21 6 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT4S1 21 4 sblock10491 ATGTAGTATGGTCCACATCT #rat_gr236387_libT1S2 20 4 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT4S2 21 2 sblock10491 TATGTAGTATGGTCCACATC #rat_gr797834_libT3S2 20 1 sblock10491 TATGTAGTATGGTCCACATC #rat_gr797834_libT4S1 20 1 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT3S1 21 1 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT5S1 21 1 sblock10491 TATGTAGTATGGTCCACATCT #rat_gr797835_libT5S2 21 1 sblock10491 TATGTAGTATGGTCCACATCTT #rat_gr797836_libT1S2 22 1 sblock10491 TATGTAGTATGGTCCACATCTTC #rat_gr797837_libT4S1 23 1 sblock10491 ATGTAGTATGGTCCACAT #rat_gr236386_libT1S1 18 1 sblock10491 ----------------ACCTGAAAAGATGGTTGACCATAGAACATGCGCTACTTCTGTGTCGTATGTAGTATGGTCCACATCTTCTCATTATC- mouseZ52p82 ACCCTCTCTCCATGGTACCTGAAAAGATGGTTGACCATAGAACATGCGCTACTTCTGTGTCGTATGTAGTATGGTCCACATCTTCTCGTTATCA *********************************************************************** ***** sblock10491 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053596 ENSRNOG00000035473 rno-mir-380 sblock10491 ...(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).)))..... 1.000 -30.50 # mouseZ52p82 ............(((((..(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).))))) 0.955 -32.00 # #sblock10491 chromosome:6:134390988:134391064:1 Same_strand|Boundary_non-coding|ENSRNOT00000053596|ENSRNOG00000035473 ## Same_strand|Exonic_non-coding|ENSRNOT00000053596|ENSRNOG00000035473 ## ENSRNOG00000035473|miRNA|rno-mir-380|rno-mir-380 [Source:miRBase;Acc:MI0006141] ## {MIR: rno-mir-380} #mouseZ52p82 chromosome:12:110949990:110950083:1 Same_strand|Boundary_non-coding|ENSMUST00000083661|ENSMUSG00000065595|miRNA|mmu-mir-380 [Source:miRBase;Acc:MI0000797] ## {MIR: mmu-mir-380} ========== sblock10495 (miRBase rno-mir-494) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10495: 0.001 randfold humanZ43p82_sblock10495: 0.002 randfold mouseZ62p82_sblock10495: 0.001 #forester humanZ43p82_sblock10495: 0.945528 forester mouseZ62p82_sblock10495: 0.945528 #identity: 100.00 sblock10495 AGGTTGTCCGTGTTGTCTTCTC #rat_gr193906_libT1S2 22 4 sblock10495 AGGTTGTCCGTGTTGTCTTCTC #rat_gr193906_libT5S2 22 2 sblock10495 AGGTTGTCCGTGTTGTCTTC #rat_gr193905_libT1S1 20 1 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT1S1 23 501 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT1S1 22 478 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT1S1 20 327 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT1S2 23 306 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT1S2 22 292 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT1S2 20 221 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT5S2 23 203 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT5S2 22 131 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT5S1 23 126 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT5S2 20 121 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT5S1 22 75 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT3S2 22 69 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT1S1 19 61 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT5S1 20 58 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT3S2 23 51 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT1S1 21 41 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT3S1 23 41 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT1S1 18 40 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT3S1 22 34 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT3S1 20 33 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT1S2 18 31 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT1S2 19 30 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT4S1 22 30 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT4S2 22 30 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT3S2 20 27 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT4S2 23 27 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT5S2 19 26 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT1S2 21 25 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT4S1 23 25 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT5S2 21 19 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT4S1 20 18 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT4S2 20 17 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT2S1 22 17 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT5S2 18 16 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT2S1 20 15 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT1S1 24 14 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT5S1 19 10 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT3S1 18 9 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT5S1 18 9 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT3S1 19 9 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT3S2 18 8 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT2S1 21 8 sblock10495 TGAAACATACACGGGAAACCTC #rat_gr922055_libT2S2 22 8 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT2S1 23 7 sblock10495 TGAAACATACACGGGAAACCTCT #rat_gr922056_libT2S2 23 7 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT1S2 24 7 sblock10495 GAAACATACACGGGAAACCTC #rat_gr478595_libT1S1 21 7 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT3S2 19 6 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT4S2 19 6 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT3S2 21 6 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT2S1 19 5 sblock10495 TGAAACATACACGGGAAACC #rat_gr922053_libT2S2 20 5 sblock10495 GAAACATACACGGGAAACC #rat_gr478594_libT1S1 19 5 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT2S2 19 4 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT4S2 21 4 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT5S2 24 4 sblock10495 GAAACATACACGGGAAACCTC #rat_gr478595_libT1S2 21 4 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT4S2 18 3 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT1S1 22 3 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT2S2 21 2 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT5S1 21 2 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT3S1 24 2 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT4S2 24 2 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT5S1 24 2 sblock10495 GAAACATACACGGGAAACCTC #rat_gr478595_libT5S2 21 2 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT5S1 22 2 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT5S2 22 2 sblock10495 GAAACATACACGGGAAACCTCTT #rat_gr478597_libT1S1 23 2 sblock10495 AACATACACGGGAAACCTC #rat_gr28006_libT1S1 19 2 sblock10495 AACATACACGGGAAACCTCTTT #rat_gr28007_libT5S1 22 2 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT2S1 18 1 sblock10495 TGAAACATACACGGGAAA #rat_gr922051_libT2S2 18 1 sblock10495 TGAAACATACACGGGAAAC #rat_gr922052_libT4S1 19 1 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libMirbase_rno-miR-494 21 1 sblock10495 TGAAACATACACGGGAAACCT #rat_gr922054_libT4S1 21 1 sblock10495 TGAAACATACACGGGAAACCTCTT #rat_gr922057_libT3S2 24 1 sblock10495 TGAAACATACACGGGAAACCTCTTT #rat_gr922058_libT1S1 25 1 sblock10495 TGAAACATACACGGGAAACCTCTTT #rat_gr922058_libT5S2 25 1 sblock10495 GAAACATACACGGGAAACC #rat_gr478594_libT4S2 19 1 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT1S2 22 1 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT2S1 22 1 sblock10495 GAAACATACACGGGAAACCTCT #rat_gr478596_libT3S2 22 1 sblock10495 AACATACACGGGAAACCTC #rat_gr28006_libT5S2 19 1 sblock10495 AACATACACGGGAAACCTCTTT #rat_gr28007_libT2S2 22 1 sblock10495 AACATACACGGGAAACCTCTTT #rat_gr28007_libT5S2 22 1 sblock10495 CATACACGGGAAACCTCT #rat_gr307177_libT1S1 18 1 sblock10495 ---------TGATACTTGAAGGAGAGGTTGTCCGTGTTGTCTTCTCTTTATTTATGATGAAACATACACGGGAAACCTCTTTTTTAGTATCA- humanZ43p82 -----------------------GAGGTTGTCCGTGTTGTCTTCTCTTTATTTATGATGAAACATACACGGGAAACCTC-------------- mouseZ62p82 AGTGCTAATTGATACTTGAAGGAGAGGTTGTCCGTGTTGTCTTCTCTTTATTTATGATGAAACATACACGGGAAACCTCTTTTTTAGTATCAA ******************************************************** sblock10495 ....> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >.... #ENSRNOT00000054367 ENSRNOG00000036244 rno-mir-494 sblock10495 .((((((.((((((((((((..(((((((((.(((((.........)).)))))).))))))..)))))))))))))))))). 1.000 -35.80 # humanZ43p82 ((((((..(((((((((.(((((.........)).)))))).))))))..)))))) 1.000 -21.10 # mouseZ62p82 ........(((((((.(((((((((((((..(((((((((.(((((.........)).)))))).))))))..)))))))))))))))))))) 0.996 -36.90 # #sblock10495 chromosome:6:134394868:134394950:1 Same_strand|Exonic_non-coding|ENSRNOT00000054367|ENSRNOG00000036244 ## ENSRNOG00000036244|miRNA|rno-mir-494|rno-mir-494 [Source:miRBase;Acc:MI0003542] ## {MIR: rno-mir-494} #humanZ43p82 chromosome:14:100565703:100565825:1 Same_strand|Boundary_non-coding|ENST00000349529|ENSG00000194717|miRNA|hsa-mir-494 [Source:miRBase;Acc:MI0003134] ## {Repeats: dust 0 class=dust} ## {MIR: hsa-mir-494} #mouseZ62p82 chromosome:12:110953520:110953612:1 Same_strand|Boundary_non-coding|ENSMUST00000093632|ENSMUSG00000070141|miRNA|mmu-mir-494 [Source:miRBase;Acc:MI0003532] ## {MIR: mmu-mir-494} ========== sblock10503 (miRBase rno-mir-376b) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10503: 0.001 randfold humanZ9p83_sblock10503: 0.001 randfold mouseZ13p83_sblock10503: 0.001 #forester humanZ9p83_sblock10503: 0.715816 forester mouseZ13p83_sblock10503: 1 #identity: 92.93 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT1S1 20 169 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT1S2 20 144 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT1S1 21 142 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT1S2 21 136 sblock10503 GTGGATATTCCTTCTATGG #rat_gr649956_libT1S1 19 107 sblock10503 GTGGATATTCCTTCTATGGTTAC #rat_gr649960_libT1S1 23 99 sblock10503 GTGGATATTCCTTCTATG #rat_gr649955_libT1S1 18 92 sblock10503 GTGGATATTCCTTCTATGGTTAC #rat_gr649960_libT1S2 23 91 sblock10503 GTGGATATTCCTTCTATGG #rat_gr649956_libT1S2 19 84 sblock10503 GTGGATATTCCTTCTATG #rat_gr649955_libT1S2 18 68 sblock10503 GGTGGATATTCCTTCTATGGTT #rat_gr622009_libT1S1 22 21 sblock10503 TGGATATTCCTTCTATGGT #rat_gr1005688_libT1S1 19 19 sblock10503 GGTGGATATTCCTTCTATGGTT #rat_gr622009_libT1S2 22 17 sblock10503 TGGATATTCCTTCTATGGT #rat_gr1005688_libT1S2 19 14 sblock10503 GTGGATATTCCTTCTATGGTTA #rat_gr649959_libT1S1 22 12 sblock10503 GGTGGATATTCCTTCTATGGT #rat_gr622008_libT1S2 21 7 sblock10503 TGGATATTCCTTCTATGG #rat_gr1005687_libT1S1 18 7 sblock10503 TGGATATTCCTTCTATGGTT #rat_gr1005689_libT1S1 20 7 sblock10503 GGTGGATATTCCTTCTATGGT #rat_gr622008_libT1S1 21 6 sblock10503 TGGATATTCCTTCTATGGTTAC #rat_gr1005691_libT1S1 22 6 sblock10503 GGTGGATATTCCTTCTATG #rat_gr622006_libT1S1 19 5 sblock10503 GGTGGATATTCCTTCTATG #rat_gr622006_libT1S2 19 5 sblock10503 GGTGGATATTCCTTCTATGG #rat_gr622007_libT1S1 20 5 sblock10503 TGGATATTCCTTCTATGGTT #rat_gr1005689_libT1S2 20 5 sblock10503 GGTGGATATTCCTTCTATGG #rat_gr622007_libT1S2 20 4 sblock10503 TGGATATTCCTTCTATGGTTAC #rat_gr1005691_libT1S2 22 4 sblock10503 TGGATATTCCTTCTATGGTTACG #rat_gr1005692_libT1S1 23 4 sblock10503 GGTGGATATTCCTTCTAT #rat_gr622005_libT1S1 18 3 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT2S1 20 3 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT3S2 20 3 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT5S2 20 3 sblock10503 GTGGATATTCCTTCTATGGTTA #rat_gr649959_libT1S2 22 3 sblock10503 TGGATATTCCTTCTATGG #rat_gr1005687_libT1S2 18 3 sblock10503 AAGGTGGATATTCCTTCTA #rat_gr54059_libT1S1 19 2 sblock10503 AGGTGGATATTCCTTCTA #rat_gr192569_libT1S2 18 2 sblock10503 GGTGGATATTCCTTCTAT #rat_gr622005_libT1S2 18 2 sblock10503 GGTGGATATTCCTTCTATGGTTAC #rat_gr622010_libT1S1 24 2 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT4S1 20 2 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT4S2 20 2 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT5S1 20 2 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT2S2 21 2 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT4S1 21 2 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT5S2 21 2 sblock10503 GTGGATATTCCTTCTATGGTTAC #rat_gr649960_libT5S2 23 2 sblock10503 GTGGATATTCCTTCTATGGTTACGT #rat_gr649961_libT1S1 25 2 sblock10503 TGGATATTCCTTCTATGGTTA #rat_gr1005690_libT1S1 21 2 sblock10503 TGGATATTCCTTCTATGGTTA #rat_gr1005690_libT1S2 21 2 sblock10503 TGGATATTCCTTCTATGGTTACG #rat_gr1005692_libT1S2 23 2 sblock10503 AAGGTGGATATTCCTTCTATGGT #rat_gr54060_libT1S1 23 1 sblock10503 AGGTGGATATTCCTTCTA #rat_gr192569_libT1S1 18 1 sblock10503 GGTGGATATTCCTTCTATGG #rat_gr622007_libT5S1 20 1 sblock10503 GGTGGATATTCCTTCTATGGTTAC #rat_gr622010_libT1S2 24 1 sblock10503 GTGGATATTCCTTCTATG #rat_gr649955_libT2S1 18 1 sblock10503 GTGGATATTCCTTCTATG #rat_gr649955_libT4S2 18 1 sblock10503 GTGGATATTCCTTCTATG #rat_gr649955_libT5S1 18 1 sblock10503 GTGGATATTCCTTCTATGG #rat_gr649956_libT4S1 19 1 sblock10503 GTGGATATTCCTTCTATGG #rat_gr649956_libT4S2 19 1 sblock10503 GTGGATATTCCTTCTATGG #rat_gr649956_libT5S2 19 1 sblock10503 GTGGATATTCCTTCTATGGT #rat_gr649957_libT3S1 20 1 sblock10503 GTGGATATTCCTTCTATGGTT #rat_gr649958_libT4S2 21 1 sblock10503 GTGGATATTCCTTCTATGGTTA #rat_gr649959_libMirbase_rno-miR-376b-5p 22 1 sblock10503 GTGGATATTCCTTCTATGGTTAC #rat_gr649960_libT4S2 23 1 sblock10503 GTGGATATTCCTTCTATGGTTAC #rat_gr649960_libT5S1 23 1 sblock10503 GTGGATATTCCTTCTATGGTTACGT #rat_gr649961_libT1S2 25 1 sblock10503 TGGATATTCCTTCTATGGT #rat_gr1005688_libT5S2 19 1 sblock10503 TGGATATTCCTTCTATGGTTACGT #rat_gr1005693_libT1S1 24 1 sblock10503 CGTGCTTCCTGGATAATCA #rat_gr405202_libT1S1 19 2 sblock10503 CGTGCTTCCTGGATAATCA #rat_gr405202_libT1S2 19 2 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT1S1 21 174 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT1S2 21 163 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT1S1 19 56 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT1S2 19 41 sblock10503 ATCATAGAGGAACATCCACT #rat_gr216714_libT1S1 20 35 sblock10503 ATCATAGAGGAACATCCA #rat_gr216712_libT1S1 18 14 sblock10503 ATCATAGAGGAACATCCACT #rat_gr216714_libT1S2 20 14 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT5S2 21 14 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT5S2 19 9 sblock10503 ATCATAGAGGAACATCCACTTT #rat_gr216716_libT1S1 22 7 sblock10503 ATCATAGAGGAACATCCA #rat_gr216712_libT1S2 18 6 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT5S1 21 5 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT2S1 19 4 sblock10503 AATCATAGAGGAACATCCACTT #rat_gr60311_libT1S1 22 3 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT2S1 21 3 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT3S2 21 3 sblock10503 ATCATAGAGGAACATCCACTTT #rat_gr216716_libT2S2 22 3 sblock10503 TAATCATAGAGGAACATCC #rat_gr732116_libT1S2 19 2 sblock10503 AATCATAGAGGAACATCCAC #rat_gr60309_libT1S1 20 2 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT5S1 19 2 sblock10503 ATCATAGAGGAACATCCACT #rat_gr216714_libT3S1 20 2 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT2S2 21 2 sblock10503 ATCATAGAGGAACATCCACTTT #rat_gr216716_libT1S2 22 2 sblock10503 TGGATAATCATAGAGGAACATC #rat_gr1005268_libT1S2 22 1 sblock10503 TAATCATAGAGGAACATCCACT #rat_gr732117_libT1S1 22 1 sblock10503 AATCATAGAGGAACATCCACT #rat_gr60310_libT1S1 21 1 sblock10503 AATCATAGAGGAACATCCACTT #rat_gr60311_libT5S2 22 1 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT2S2 19 1 sblock10503 ATCATAGAGGAACATCCAC #rat_gr216713_libT4S1 19 1 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libMirbase_rno-miR-376b-3p 21 1 sblock10503 ATCATAGAGGAACATCCACTT #rat_gr216715_libT4S2 21 1 sblock10503 ATCATAGAGGAACATCCACTTT #rat_gr216716_libT2S1 22 1 sblock10503 ATCATAGAGGAACATCCACTTT #rat_gr216716_libT5S1 22 1 sblock10503 ATCATAGAGGAACATCCACTTTT #rat_gr216717_libT2S2 23 1 sblock10503 TCATAGAGGAACATCCACTT #rat_gr822552_libT5S2 20 1 sblock10503 CATAGAGGAACATCCACTT #rat_gr307657_libT1S1 19 1 sblock10503 CATAGAGGAACATCCACTT #rat_gr307657_libT1S2 19 1 sblock10503 TTTGGTATTTAAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTTCAGTATCAAA humanZ9p83 ----------AAAACGTGGATATTCCTTCTATGTTTACGTGATTCCTGGTTAATCATAGAGGAAAATCCATGTTTT---------- mouseZ13p83 ----------AAAAGGTGGATATTCCTTCTATGGTTACGTGCTTCCTGGATAATCATAGAGGAACATCCACTTTTT---------- **** ****************** ******* ******* ************** ***** **** sblock10503 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054598 ENSRNOG00000036490 rno-mir-376b sblock10503 .((((((((.(((((((((((.(((((.(((((((((....((....)).)))))))))))))).))))))))))).)))))))). 1.000 -36.20 # humanZ9p83 (((((((((((.((((.((((((......((((.....))))..)))))))))).))))))))))) 1.000 -23.80 # mouseZ13p83 (((((((((((.((((.((((((((((....((....)).)))))))))))))).))))))))))) 1.000 -27.70 # #sblock10503 chromosome:6:134404180:134404265:1 Same_strand|Exonic_non-coding|ENSRNOT00000054598|ENSRNOG00000036490 ## ENSRNOG00000036490|miRNA|rno-mir-376b|rno-mir-376b [Source:miRBase;Acc:MI0003544] ## {MIR: rno-mir-376b} #humanZ9p83 chromosome:14:100576545:100576610:1 intergenic ## {Repeats: trf 0 class=trf} ## {MIR: hsa-mir-376b} #mouseZ13p83 chromosome:12:110961676:110961741:1 Same_strand|Exonic_non-coding|ENSMUST00000102052|ENSMUSG00000076006|miRNA|mmu-mir-376b [Source:miRBase;Acc:MI0001162] ## {MIR: mmu-mir-376b} ========== sblock10508 (miRBase rno-mir-539) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10508: 0.001 randfold humanZ19p83_sblock10508: 0.001 randfold mouseZ22p83_sblock10508: 0.001 #forester humanZ19p83_sblock10508: 0.785027 forester mouseZ22p83_sblock10508: 0.857364 #identity: 90.80 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT1S1 21 984 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT1S2 21 540 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT1S1 22 420 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT1S2 22 380 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT1S1 19 294 sblock10508 GGAGAAATTATCCTTGGT #rat_gr586709_libT1S1 18 270 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT1S2 19 262 sblock10508 GGAGAAATTATCCTTGGT #rat_gr586709_libT1S2 18 197 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT1S1 23 177 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT1S1 20 176 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT1S2 20 139 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT1S2 23 113 sblock10508 GGAGAAATTATCCTTGGTGTGTTT #rat_gr586715_libT1S2 24 20 sblock10508 GGAGAAATTATCCTTGGTGTGTTT #rat_gr586715_libT1S1 24 17 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT3S1 21 15 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT4S2 21 7 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT5S2 22 5 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT3S1 23 5 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT3S2 19 4 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT3S2 21 4 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT4S1 21 4 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT3S1 19 2 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT4S2 19 2 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT3S2 20 2 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT2S1 21 2 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT2S2 21 2 sblock10508 GGAGAAATTATCCTTGGTGTG #rat_gr586712_libT5S1 21 2 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT3S2 22 2 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT4S1 22 2 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT4S2 22 2 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT4S1 23 2 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT5S1 23 2 sblock10508 AGGAGAAATTATCCTTGG #rat_gr172797_libT1S2 18 1 sblock10508 AGGAGAAATTATCCTTGGT #rat_gr172798_libT1S1 19 1 sblock10508 AGGAGAAATTATCCTTGGTG #rat_gr172799_libT1S1 20 1 sblock10508 AGGAGAAATTATCCTTGGTGTG #rat_gr172800_libT1S2 22 1 sblock10508 AGGAGAAATTATCCTTGGTGTGT #rat_gr172801_libT1S1 23 1 sblock10508 AGGAGAAATTATCCTTGGTGTGT #rat_gr172801_libT1S2 23 1 sblock10508 AGGAGAAATTATCCTTGGTGTGT #rat_gr172801_libT3S2 23 1 sblock10508 GGAGAAATTATCCTTGGT #rat_gr586709_libT2S2 18 1 sblock10508 GGAGAAATTATCCTTGGT #rat_gr586709_libT3S1 18 1 sblock10508 GGAGAAATTATCCTTGGT #rat_gr586709_libT3S2 18 1 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT5S1 19 1 sblock10508 GGAGAAATTATCCTTGGTG #rat_gr586710_libT5S2 19 1 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT4S1 20 1 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT5S1 20 1 sblock10508 GGAGAAATTATCCTTGGTGT #rat_gr586711_libT5S2 20 1 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libMirbase_rno-miR-539 22 1 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT2S2 22 1 sblock10508 GGAGAAATTATCCTTGGTGTGT #rat_gr586713_libT5S1 22 1 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT2S1 23 1 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT3S2 23 1 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT4S2 23 1 sblock10508 GGAGAAATTATCCTTGGTGTGTT #rat_gr586714_libT5S2 23 1 sblock10508 GGAGAAATTATCCTTGGTGTGTTT #rat_gr586715_libT3S2 24 1 sblock10508 GGAGAAATTATCCTTGGTGTGTTTG #rat_gr586716_libT1S1 25 1 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT1S1 22 98 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT1S2 22 71 sblock10508 CATACAAGGGTAATTTCT #rat_gr307024_libT1S1 18 33 sblock10508 CATACAAGGGTAATTTCT #rat_gr307024_libT1S2 18 31 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT1S1 19 30 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT1S2 19 26 sblock10508 CATACAAGGGTAATTTCTTT #rat_gr307026_libT1S1 20 24 sblock10508 ATACAAGGGTAATTTCTTT #rat_gr206611_libT1S1 19 15 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT3S2 22 13 sblock10508 ATACAAGGGTAATTTCTTT #rat_gr206611_libT1S2 19 13 sblock10508 ATACAAGGGTAATTTCTTTTCG #rat_gr206614_libT1S2 22 10 sblock10508 CATACAAGGGTAATTTCTTT #rat_gr307026_libT1S2 20 9 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT3S1 22 9 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT5S2 22 6 sblock10508 ATACAAGGGTAATTTCTT #rat_gr206610_libT1S1 18 6 sblock10508 ATACAAGGGTAATTTCTTTTC #rat_gr206613_libT1S1 21 6 sblock10508 ATACAAGGGTAATTTCTTTTCG #rat_gr206614_libT1S1 22 6 sblock10508 TCATACAAGGGTAATTTCTTTTC #rat_gr822387_libT1S1 23 5 sblock10508 ATACAAGGGTAATTTCTT #rat_gr206610_libT1S2 18 5 sblock10508 TCATACAAGGGTAATTTCTT #rat_gr822385_libT1S2 20 4 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT3S2 19 4 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT5S2 19 4 sblock10508 TCATACAAGGGTAATTTC #rat_gr822383_libT1S1 18 3 sblock10508 TCATACAAGGGTAATTTCT #rat_gr822384_libT1S2 19 3 sblock10508 TCATACAAGGGTAATTTCTTT #rat_gr822386_libT1S1 21 3 sblock10508 TCATACAAGGGTAATTTCTTT #rat_gr822386_libT1S2 21 3 sblock10508 CATACAAGGGTAATTTCTTT #rat_gr307026_libT3S1 20 3 sblock10508 CATACAAGGGTAATTTCTTTT #rat_gr307027_libT1S1 21 3 sblock10508 ATACAAGGGTAATTTCTTTTC #rat_gr206613_libT1S2 21 3 sblock10508 TCATACAAGGGTAATTTCT #rat_gr822384_libT1S1 19 2 sblock10508 TCATACAAGGGTAATTTCTT #rat_gr822385_libT1S1 20 2 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT3S1 19 2 sblock10508 CATACAAGGGTAATTTCTTT #rat_gr307026_libT3S2 20 2 sblock10508 CATACAAGGGTAATTTCTTT #rat_gr307026_libT5S2 20 2 sblock10508 CATACAAGGGTAATTTCTTTT #rat_gr307027_libT1S2 21 2 sblock10508 CATACAAGGGTAATTTCTTTTCG #rat_gr307029_libT1S2 23 2 sblock10508 ATACAAGGGTAATTTCTT #rat_gr206610_libT5S2 18 2 sblock10508 TCATACAAGGGTAATTTC #rat_gr822383_libT1S2 18 1 sblock10508 TCATACAAGGGTAATTTCTT #rat_gr822385_libT5S2 20 1 sblock10508 TCATACAAGGGTAATTTCTTT #rat_gr822386_libT5S2 21 1 sblock10508 TCATACAAGGGTAATTTCTTTTC #rat_gr822387_libT1S2 23 1 sblock10508 TCATACAAGGGTAATTTCTTTTC #rat_gr822387_libT3S1 23 1 sblock10508 TCATACAAGGGTAATTTCTTTTC #rat_gr822387_libT3S2 23 1 sblock10508 CATACAAGGGTAATTTCT #rat_gr307024_libT2S1 18 1 sblock10508 CATACAAGGGTAATTTCT #rat_gr307024_libT3S1 18 1 sblock10508 CATACAAGGGTAATTTCTT #rat_gr307025_libT2S2 19 1 sblock10508 CATACAAGGGTAATTTCTTTTC #rat_gr307028_libT4S1 22 1 sblock10508 CATACAAGGGTAATTTCTTTTCG #rat_gr307029_libT1S1 23 1 sblock10508 ATACAAGGGTAATTTCTT #rat_gr206610_libT3S1 18 1 sblock10508 ATACAAGGGTAATTTCTT #rat_gr206610_libT3S2 18 1 sblock10508 ATACAAGGGTAATTTCTTTT #rat_gr206612_libT1S1 20 1 sblock10508 ATACAAGGGTAATTTCTTTTC #rat_gr206613_libT4S1 21 1 sblock10508 ATACAAGGGTAATTTCTTTTC #rat_gr206613_libT5S2 21 1 sblock10508 ATACAAGGGTAATTTCTTTTCGA #rat_gr206615_libT1S1 23 1 sblock10508 ATACAAGGGTAATTTCTTTTCGA #rat_gr206615_libT1S2 23 1 sblock10508 ATACAAGGGTAATTTCTTTTCGA #rat_gr206615_libT3S2 23 1 sblock10508 TACAAGGGTAATTTCTTTTCGA #rat_gr739996_libT1S2 22 1 sblock10508 ------------------ATACTTGAGGAGAAATTATCCTTGGTGTGTTTGCTC--TTTTGGATGAATCATACAAGGGTAATTTCTTTTCGAGTAT------------------ humanZ19p83 -GTCCGTGCTGCTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTCGCTTTATTTATGATGAATCATACAAGGACAATTTCTTTTTGAGTATCAAATCTTGCCTCGGC-- mouseZ22p83 CTGCTGTGCTACTGTTTCATACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTC--TTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTATCAAATACTGCCCTGGTGG ******************************* *** *** **************** ********** ****** sblock10508 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054596 ENSRNOG00000036488 rno-mir-539 sblock10508 ((((((((((((((((((((((((.((((((((..( ....)..)))).)))))))))))))))))))))))))))) 1.000 -35.10 # humanZ19p83 ..(((.((....((((.(((((..((((((((((.(((((.(((((((((.((.......)))))).)))))))))).))))))))))..))))).))))...))..))). 0.977 -36.40 # mouseZ22p83 (((((..((...(((((.(((((..((((((((((((((((.(((((.....(( .....)).....)))))))))))))))))))))..))))).)))))..))...))))) 0.991 -39.50 # #sblock10508 chromosome:6:134408917:134408992:1 Same_strand|Exonic_non-coding|ENSRNOT00000054596|ENSRNOG00000036488 ## Same_strand|Boundary_non-coding|ENSRNOT00000054596|ENSRNOG00000036488 ## ENSRNOG00000036488|miRNA|rno-mir-539|rno-mir-539 [Source:miRBase;Acc:MI0003526] ## {MIR: rno-mir-539} #humanZ19p83 chromosome:14:100583394:100583504:1 Same_strand|Boundary_non-coding|ENST00000365690|ENSG00000202560|miRNA|hsa-mir-539 [Source:miRBase;Acc:MI0003514] ## {MIR: hsa-mir-539} #mouseZ22p83 chromosome:12:110966320:110966431:1 Same_strand|Boundary_non-coding|ENSMUST00000102109|ENSMUSG00000076063|miRNA|mmu-mir-539 [Source:miRBase;Acc:MI0003520] ## {MIR: mmu-mir-539} ========== sblock11445 (miRBase rno-mir-33) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11445: 0.001 randfold humanZ29p84_sblock11445: 0.001 randfold mouseZ42p84_sblock11445: 0.001 #forester humanZ29p84_sblock11445: 0.904309 forester mouseZ42p84_sblock11445: 0.978306 #identity: 93.07 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT1S1 20 666 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT3S1 20 417 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT1S2 20 412 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT5S1 20 227 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT2S2 20 206 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT5S2 20 177 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT3S2 20 149 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT3S1 21 148 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT2S1 20 145 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT1S1 21 120 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT1S1 19 88 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT1S2 21 87 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT1S1 18 86 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT5S1 21 80 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT3S2 21 77 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT5S2 21 76 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT2S1 21 70 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT4S2 20 67 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT3S1 19 60 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT3S1 18 48 sblock11445 GTGCATTGTAGTTGCATTGC #rat_gr646722_libT4S1 20 43 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT2S1 19 40 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT2S2 21 40 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT2S2 19 36 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT1S2 18 35 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT1S2 19 32 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT3S2 18 28 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT2S2 18 25 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT5S2 19 25 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT3S2 19 24 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT5S1 18 20 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT5S2 18 20 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT5S1 19 19 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT2S1 18 16 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT4S1 21 16 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libT4S2 21 15 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT4S2 18 11 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT4S2 19 10 sblock11445 GTGCATTGTAGTTGCATTG #rat_gr646721_libT4S1 19 5 sblock11445 GTGCATTGTAGTTGCATTGCAT #rat_gr646724_libT1S2 22 4 sblock11445 GTGCATTGTAGTTGCATT #rat_gr646720_libT4S1 18 3 sblock11445 GTGCATTGTAGTTGCATTGCAT #rat_gr646724_libT5S1 22 2 sblock11445 GTGCATTGTAGTTGCATTGCAT #rat_gr646724_libT5S2 22 2 sblock11445 GTGCATTGTAGTTGCATTGCA #rat_gr646723_libMirbase_rno-miR-33 21 1 sblock11445 GTGCATTGTAGTTGCATTGCAT #rat_gr646724_libT1S1 22 1 sblock11445 GTGCATTGTAGTTGCATTGCAT #rat_gr646724_libT3S2 22 1 sblock11445 TGCATTGTAGTTGCATTGC #rat_gr963389_libT2S2 19 1 sblock11445 GCATTGTAGTTGCATTGC #rat_gr539003_libT1S1 18 1 sblock11445 GCATTGTAGTTGCATTGC #rat_gr539003_libT2S2 18 1 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT1S1 22 232 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT3S1 22 224 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT3S2 22 172 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT1S2 22 169 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT1S1 20 120 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT2S2 22 102 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT5S2 22 90 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT1S2 20 89 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT3S1 18 84 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT2S1 22 80 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT5S1 22 80 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT3S1 20 72 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT1S1 18 71 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT1S2 18 60 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT3S1 21 54 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT2S2 20 51 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT3S2 18 49 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT2S1 18 48 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT2S1 20 48 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT3S2 20 41 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT2S2 18 38 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT2S2 21 35 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT4S2 22 33 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT5S1 20 30 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT1S1 21 30 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT2S1 21 28 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT5S2 20 27 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT3S2 21 25 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT5S1 18 19 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT5S2 18 19 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT5S2 21 18 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT1S2 21 17 sblock11445 CAATGTTTCCACAGTGCATCAC #rat_gr274290_libT4S1 22 16 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT5S1 21 14 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT3S1 19 12 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT4S2 18 10 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT4S1 20 10 sblock11445 CAATGTTTCCACAGTGCATC #rat_gr274288_libT4S2 20 9 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT5S2 19 8 sblock11445 CAATGTTTCCACAGTGCA #rat_gr274284_libT4S1 18 6 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT4S1 21 6 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT1S1 19 5 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT2S2 19 5 sblock11445 CAATGTTTCCACAGTGCATCA #rat_gr274289_libT4S2 21 5 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT1S2 19 4 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT2S1 19 4 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT2S2 20 4 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT3S1 20 4 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT2S1 20 3 sblock11445 CAATGTTTCCACAGTGCAT #rat_gr274287_libT5S1 19 2 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT3S2 20 2 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT4S2 20 2 sblock11445 AATGTTTCCACAGTGCAT #rat_gr64397_libT1S1 18 1 sblock11445 AATGTTTCCACAGTGCATC #rat_gr64398_libT3S1 19 1 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT1S2 20 1 sblock11445 AATGTTTCCACAGTGCATCA #rat_gr64399_libT5S1 20 1 sblock11445 ATGTTTCCACAGTGCATCAC #rat_gr238954_libT5S2 20 1 sblock11445 --------------------CCGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAGTACCTGTGCAATGTTTCCACAGTGCATCACGG----------------- humanZ29p84 --------CCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAGAGGCCTGCCTGG----- mouseZ42p84 GCACACCTCCTGGCGGGCAGCTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGCAATACCTGTGCAATGTTTCCACAGTGCATCACGGAGGCCTGCCCTGACTGC * ******************************** **** ************************ * sblock11445 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000056041 ENSRNOG00000007400 Srebf2 sblock11445 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000009864 ENSRNOG00000007400 Srebf2 sblock11445 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053670 ENSRNOG00000035547 rno-mir-33 sblock11445 ((((((((((((((.(..(((((((((.....((.....)).)))))))))..).)))))))))))))) 1.000 -35.80 # humanZ29p84 ((.(((((((..((((((((((((((....((((((((((....((.....))))))))))))....))))))))))))))..))))))).)) 1.000 -56.20 # mouseZ42p84 (((....((..(((((((..((((((((((((((....(((((((((.....((.....)).)))))))))....))))))))))))))..)))))))..)).))) 1.000 -51.40 # #sblock11445 chromosome:7:120573219:120573287:1 Same_strand|Intronic_coding|ENSRNOT00000056041|ENSRNOG00000007400 ## Same_strand|Boundary_non-coding|ENSRNOT00000053670|ENSRNOG00000035547 ## Same_strand|Exonic_non-coding|ENSRNOT00000053670|ENSRNOG00000035547 ## ENSRNOG00000035547|miRNA|rno-mir-33|rno-mir-33 [Source:miRBase;Acc:MI0000874] ## ENSRNOG00000007400|protein_coding|Srebf2|sterol regulatory element binding factor 2 [Source:RefSeq_peptide;Acc:NP_001028866] ## {MIR: rno-mir-33} #humanZ29p84 chromosome:22:40626882:40626974:1 Same_strand|Intronic_coding|ENST00000361204|ENSG00000198911|protein_coding|Sterol regulatory element-binding protein 2 (SREBP-2)(Sterol regulatory element-binding transcription factor 2) [Contains Processed sterol regulatory element-binding protein 2] [Source:UniProtKB/Swiss-Prot;Acc:Q12772] ## Same_strand|Boundary_non-coding|ENST00000385197|ENSG00000207932|miRNA|hsa-mir-33a [Source:miRBase;Acc:MI0000091] ## {MIR: hsa-mir-33a} #mouseZ42p84 chromosome:15:82028532:82028637:1 Same_strand|Intronic_coding|ENSMUST00000023100|ENSMUSG00000022463|protein_coding|sterol regulatory element binding factor 2 Gene [Source:MGI Symbol;Acc:MGI:107585] ## Same_strand|Boundary_non-coding|ENSMUST00000083531|ENSMUSG00000065465|miRNA|mmu-mir-33 [Source:miRBase;Acc:MI0000707] ## {MIR: mmu-mir-33} ========== sblock11600 (miRBase rno-mir-34c) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11600: 0.001 randfold humanZ1p85_sblock11600: 0.001 randfold mouseZ1p85_sblock11600: 0.001 #forester humanZ1p85_sblock11600: 0.97548 forester mouseZ1p85_sblock11600: 1 #identity: 98.36 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT1S1 21 92 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT1S2 21 81 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT5S1 21 48 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT1S2 20 38 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT1S1 20 30 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT1S1 19 30 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT5S1 20 27 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT1S2 19 22 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT1S1 18 21 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT1S2 22 19 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT1S2 18 18 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT3S1 21 15 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT1S1 22 14 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT5S1 22 13 sblock11600 AATCACTAACCACACAGCCAGGT #rat_gr60079_libT1S1 23 10 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT3S2 21 10 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT4S1 21 10 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT3S1 20 10 sblock11600 AATCACTAACCACACAGCCAGGT #rat_gr60079_libT5S1 23 8 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT5S1 19 8 sblock11600 AATCACTAACCACACAGCCAGGT #rat_gr60079_libT1S2 23 6 sblock11600 ATCACTAACCACACAGCCAG #rat_gr215717_libT1S1 20 6 sblock11600 ATCACTAACCACACAGCCAG #rat_gr215717_libT1S2 20 6 sblock11600 ATCACTAACCACACAGCCAGG #rat_gr215718_libT1S1 21 5 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT3S2 20 5 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT5S2 20 5 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT3S1 22 4 sblock11600 ATCACTAACCACACAGCC #rat_gr215715_libT1S1 18 4 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT4S2 22 3 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT2S1 21 3 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT2S2 21 3 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT4S2 21 3 sblock11600 AATCACTAACCACACAGCCAG #rat_gr60077_libT5S2 21 3 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT4S1 20 3 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT3S2 19 3 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT4S1 19 3 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT2S2 18 3 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT2S2 22 2 sblock11600 ATCACTAACCACACAGCCAG #rat_gr215717_libT5S1 20 2 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT2S2 20 2 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT2S2 19 2 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT2S1 18 2 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT3S2 18 2 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT5S1 18 2 sblock11600 ATCACTAACCACACAGCCAGGTA #rat_gr215719_libT1S2 23 1 sblock11600 AATCACTAACCACACAGCCAGGT #rat_gr60079_libT4S2 23 1 sblock11600 ATCACTAACCACACAGCCAGG #rat_gr215718_libT3S2 21 1 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libMirbase_rno-miR-34c* 22 1 sblock11600 AATCACTAACCACACAGCCAGG #rat_gr60078_libT4S1 22 1 sblock11600 ATCACTAACCACACAGCCAG #rat_gr215717_libT3S1 20 1 sblock11600 ATCACTAACCACACAGCCAG #rat_gr215717_libT5S2 20 1 sblock11600 ATCACTAACCACACAGCCA #rat_gr215716_libT1S1 19 1 sblock11600 ATCACTAACCACACAGCCA #rat_gr215716_libT5S1 19 1 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT2S1 20 1 sblock11600 AATCACTAACCACACAGCCA #rat_gr60076_libT4S2 20 1 sblock11600 ATCACTAACCACACAGCC #rat_gr215715_libT1S2 18 1 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT3S1 19 1 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT4S2 19 1 sblock11600 AATCACTAACCACACAGCC #rat_gr60075_libT5S2 19 1 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT3S1 18 1 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT4S1 18 1 sblock11600 AATCACTAACCACACAGC #rat_gr60074_libT4S2 18 1 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT1S2 23 1435 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT5S1 23 1106 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT1S1 23 963 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT1S2 19 335 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT1S1 19 224 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT1S2 22 218 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT3S2 23 212 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT1S2 20 190 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT5S1 19 188 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT5S1 22 187 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT1S2 18 185 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT1S1 22 138 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT1S1 18 137 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT3S1 23 128 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT1S1 20 128 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT5S2 23 122 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT1S2 21 108 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT5S1 20 102 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT5S1 18 77 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT1S1 21 70 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT3S2 19 67 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT4S2 23 64 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT5S1 21 57 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT3S2 22 45 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT2S2 23 42 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT3S1 19 39 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT3S1 22 34 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT3S2 18 33 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT2S1 23 31 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libT4S1 23 31 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT3S2 20 28 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT5S2 19 26 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT3S1 18 22 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT3S2 21 21 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT5S2 22 20 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT4S2 22 19 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT5S2 20 17 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT4S1 22 15 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT3S1 20 15 sblock11600 AGGCAGTGTAGTTAGCTGATTGCT #rat_gr178364_libT5S1 24 14 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT2S2 19 14 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT2S2 22 13 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT4S1 19 13 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT3S1 21 12 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT4S2 19 12 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT2S2 18 12 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT5S2 18 11 sblock11600 AGGCAGTGTAGTTAGCTGATTGCT #rat_gr178364_libT1S1 24 9 sblock11600 AGGCAGTGTAGTTAGCTGATTG #rat_gr178362_libT2S1 22 9 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT4S2 18 9 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT5S2 21 6 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT2S2 21 5 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT2S1 20 5 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT4S2 20 5 sblock11600 AGGCAGTGTAGTTAGCTGATTGCT #rat_gr178364_libT1S2 24 4 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT2S1 21 4 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT4S1 21 4 sblock11600 AGGCAGTGTAGTTAGCTGATT #rat_gr178361_libT4S2 21 4 sblock11600 AGGCAGTGTAGTTAGCTGA #rat_gr178359_libT2S1 19 4 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT2S1 18 4 sblock11600 AGGCAGTGTAGTTAGCTG #rat_gr178358_libT4S1 18 4 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT2S2 20 3 sblock11600 AGGCAGTGTAGTTAGCTGATTGCT #rat_gr178364_libT3S1 24 2 sblock11600 AGGCAGTGTAGTTAGCTGATTGCT #rat_gr178364_libT3S2 24 2 sblock11600 AGGCAGTGTAGTTAGCTGAT #rat_gr178360_libT4S1 20 2 sblock11600 GTGTAGTTAGCTGATTGC #rat_gr653309_libT1S1 18 1 sblock11600 CAGTGTAGTTAGCTGATTGC #rat_gr305185_libT1S1 20 1 sblock11600 GCAGTGTAGTTAGCTGATTGC #rat_gr536442_libT1S2 21 1 sblock11600 GCAGTGTAGTTAGCTGATTGC #rat_gr536442_libT5S1 21 1 sblock11600 GGCAGTGTAGTTAGCTGATTGC #rat_gr594040_libT1S2 22 1 sblock11600 GGCAGTGTAGTTAGCTGATTGC #rat_gr594040_libT5S1 22 1 sblock11600 AGGCAGTGTAGTTAGCTGATTGC #rat_gr178363_libMirbase_rno-miR-34c 23 1 sblock11600 TAGGCAGTGTAGTTAGCTGATTGC #rat_gr778702_libT1S1 24 1 sblock11600 TAGGCAGTGTAGTTAGCTGATTG #rat_gr778701_libT1S2 23 1 sblock11600 GGCAGTGTAGTTAGCTGATT #rat_gr594039_libT1S2 20 1 sblock11600 TAGGCAGTGTAGTTAGCTGATT #rat_gr778700_libT1S2 22 1 sblock11600 TAGGCAGTGTAGTTAGCTGAT #rat_gr778699_libT1S2 21 1 sblock11600 GGCAGTGTAGTTAGCTGA #rat_gr594038_libT5S1 18 1 sblock11600 TAGGCAGTGTAGTTAGCTGA #rat_gr778698_libT3S2 20 1 sblock11600 -------------------AGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCAGGTAAAAAGACT------------ humanZ1p85 GACTGCAATTTTTTCTATGAGTCTAGTTACTAGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACGGCCAGGTAAAAAGATTTGGGAATTCGTC mouseZ1p85 -------------------------------AGGCAGTGTAGTTAGCTGATTGCTAATAGTACCAATCACTAACCACACAGCCA------------------------ ************************************************ **** sblock11600 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053601 ENSRNOG00000035478 rno-mir-34c sblock11600 (((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..))))) 1.000 -31.60 # humanZ1p85 ...........(((((..((((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))))))))))...... 0.998 -34.10 # mouseZ1p85 .(((.((((.(((((.((((((.((....)).))))))))))).)))).))). 1.000 -21.30 # #sblock11600 chromosome:8:54422052:54422128:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053601|ENSRNOG00000035478 ## ENSRNOG00000035478|miRNA|rno-mir-34c|rno-mir-34c [Source:miRBase;Acc:MI0000876] ## {MIR: rno-mir-34c} #humanZ1p85 chromosome:11:110889355:110889462:1 Same_strand|Boundary_non-coding|ENST00000384831|ENSG00000207562|miRNA|hsa-mir-34c [Source:miRBase;Acc:MI0000743] ## {SimpF: rank = 1 1 FirstEF} ## {MIR: hsa-mir-34c} #mouseZ1p85 chromosome:9:50911119:50911235:-1 Same_strand|Boundary_non-coding|ENSMUST00000083653|ENSMUSG00000065587|miRNA|mmu-mir-34c [Source:miRBase;Acc:MI0000403] ## {MIR: mmu-mir-34c} ========== sblock11601 (miRBase rno-mir-34b) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11601: 0.001 randfold humanZ3p85_sblock11601: 0.002 randfold mouseZ3p85_sblock11601: 0.001 #forester humanZ3p85_sblock11601: 0.885577 forester mouseZ3p85_sblock11601: 1 #identity: 93.75 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT1S2 20 113 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT1S2 22 108 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT1S1 20 100 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT1S1 22 79 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT5S1 20 54 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT5S1 22 53 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT1S2 22 33 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT3S2 22 24 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT1S2 18 22 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT1S2 23 20 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT1S2 19 20 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT1S1 23 19 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT1S1 19 18 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT3S1 20 18 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT1S2 19 17 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT1S1 18 17 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT4S2 22 16 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT4S1 20 16 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT1S2 21 13 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT3S2 20 13 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT1S1 19 13 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT3S1 22 12 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT1S2 21 12 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT1S1 21 11 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT2S2 22 11 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT4S1 22 11 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT2S2 20 11 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT5S1 22 10 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT4S2 20 10 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT1S1 21 8 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT3S1 19 8 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT5S2 20 8 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT1S1 22 7 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT2S1 22 7 sblock11601 AATCACTAACTCCACTGCCA #rat_gr60093_libT2S1 20 7 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT5S1 19 6 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT5S1 18 6 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT3S2 21 5 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT5S1 21 5 sblock11601 AATCACTAACTCCACTGCCATC #rat_gr60095_libT5S2 22 5 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT4S1 21 5 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT5S1 21 5 sblock11601 ATCACTAACTCCACTGCC #rat_gr215725_libT1S2 18 5 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT3S1 23 4 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT5S1 23 4 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT5S2 23 4 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT5S2 21 4 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT5S1 19 4 sblock11601 CAATCACTAACTCCACTGCCA #rat_gr273108_libT1S2 21 4 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT3S1 18 4 sblock11601 AATCACTAACTCCACTGCCATCAA #rat_gr60097_libT1S1 24 3 sblock11601 AATCACTAACTCCACTGCCATCAA #rat_gr60097_libT1S2 24 3 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT4S2 22 3 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT4S1 23 3 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT4S2 23 3 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT2S2 21 3 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT3S1 21 3 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT4S1 19 3 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT2S2 18 3 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT4S1 18 3 sblock11601 ATCACTAACTCCACTGCCATCAA #rat_gr215730_libT1S2 23 2 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT3S2 22 2 sblock11601 AATCACTAACTCCACTGCCATCA #rat_gr60096_libT3S2 23 2 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT4S1 21 2 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT4S2 21 2 sblock11601 CAATCACTAACTCCACTGCCATC #rat_gr273109_libT1S1 23 2 sblock11601 CAATCACTAACTCCACTGCCATC #rat_gr273109_libT5S1 23 2 sblock11601 ATCACTAACTCCACTGCCAT #rat_gr215727_libT1S1 20 2 sblock11601 ATCACTAACTCCACTGCCAT #rat_gr215727_libT1S2 20 2 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT3S2 21 2 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT3S2 19 2 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT4S2 19 2 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT2S1 19 2 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT2S2 19 2 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT4S2 19 2 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT4S2 18 2 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT5S2 18 2 sblock11601 AATCACTAACTCCACTGCCATCAAA #rat_gr60098_libT5S1 25 1 sblock11601 ATCACTAACTCCACTGCCATCAA #rat_gr215730_libT3S2 23 1 sblock11601 ATCACTAACTCCACTGCCATCAA #rat_gr215730_libT5S1 23 1 sblock11601 AATCACTAACTCCACTGCCATCAA #rat_gr60097_libT4S2 24 1 sblock11601 AATCACTAACTCCACTGCCATCAA #rat_gr60097_libT5S1 24 1 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT2S2 22 1 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT3S1 22 1 sblock11601 ATCACTAACTCCACTGCCATCA #rat_gr215729_libT5S2 22 1 sblock11601 TCACTAACTCCACTGCCATC #rat_gr814347_libT5S1 20 1 sblock11601 ATCACTAACTCCACTGCCATC #rat_gr215728_libT3S1 21 1 sblock11601 ATCACTAACTCCACTGCCAT #rat_gr215727_libT4S1 20 1 sblock11601 AATCACTAACTCCACTGCCAT #rat_gr60094_libT4S2 21 1 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT2S1 19 1 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT2S2 19 1 sblock11601 ATCACTAACTCCACTGCCA #rat_gr215726_libT5S2 19 1 sblock11601 ATCACTAACTCCACTGCC #rat_gr215725_libT1S1 18 1 sblock11601 ATCACTAACTCCACTGCC #rat_gr215725_libT3S1 18 1 sblock11601 ATCACTAACTCCACTGCC #rat_gr215725_libT4S2 18 1 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT3S1 19 1 sblock11601 AATCACTAACTCCACTGCC #rat_gr60092_libT5S2 19 1 sblock11601 AATCACTAACTCCACTGC #rat_gr60091_libT2S1 18 1 sblock11601 CAATCACTAACTCCACTGC #rat_gr273107_libT1S2 19 1 sblock11601 CAATCACTAACTCCACTG #rat_gr273106_libT5S1 18 1 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT1S1 23 208 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT1S2 23 159 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT5S1 23 131 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT1S2 20 66 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT1S2 19 54 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT3S1 23 48 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT5S1 20 38 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT3S2 23 32 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT5S1 19 32 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT1S1 20 30 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT1S1 19 29 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT1S1 24 16 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT1S1 18 15 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT3S1 19 14 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT4S2 23 12 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT1S2 24 11 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT1S1 22 11 sblock11601 TAGGCAGTGTAATTAGCTGATTG #rat_gr778692_libT1S1 23 10 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT1S2 20 10 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT1S2 18 10 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT5S1 18 10 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT3S2 20 9 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT5S2 23 8 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT5S1 24 8 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT5S1 22 8 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT1S1 18 8 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT1S2 22 7 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT1S1 20 7 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT1S2 18 7 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT2S1 23 6 sblock11601 AGGCAGTGTAATTAGCTGATT #rat_gr178313_libT1S1 21 6 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT3S1 20 6 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT5S1 18 6 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT3S2 24 5 sblock11601 TAGGCAGTGTAATTAGCTGATTG #rat_gr778692_libT1S2 23 5 sblock11601 AGGCAGTGTAATTAGCTGATT #rat_gr178313_libT1S2 21 5 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT2S1 20 5 sblock11601 AGGCAGTGTAATTAGCTGATTGT #rat_gr178315_libT2S2 23 4 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT3S1 18 4 sblock11601 TAGGCAGTGTAATTAGCTG #rat_gr778688_libT1S2 19 4 sblock11601 TAGGCAGTGTAATTAGCTGATTG #rat_gr778692_libT5S1 23 3 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT5S2 20 3 sblock11601 TAGGCAGTGTAATTAGCTGAT #rat_gr778690_libT1S1 21 3 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT3S2 19 3 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT3S2 18 3 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT3S1 24 2 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT3S1 22 2 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT2S2 20 2 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT2S1 19 2 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT3S1 20 2 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT4S2 18 2 sblock11601 TAGGCAGTGTAATTAGCTG #rat_gr778688_libT1S1 19 2 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT2S1 18 2 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT3S2 18 2 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT4S2 24 1 sblock11601 TAGGCAGTGTAATTAGCTGATTGT #rat_gr778693_libT5S2 24 1 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT2S1 22 1 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT2S2 22 1 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT3S2 22 1 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT4S2 22 1 sblock11601 AGGCAGTGTAATTAGCTGATTG #rat_gr178314_libT5S2 22 1 sblock11601 TAGGCAGTGTAATTAGCTGATTG #rat_gr778692_libMirbase_rno-miR-34b 23 1 sblock11601 AGGCAGTGTAATTAGCTGATT #rat_gr178313_libT3S2 21 1 sblock11601 TAGGCAGTGTAATTAGCTGATT #rat_gr778691_libT1S1 22 1 sblock11601 TAGGCAGTGTAATTAGCTGATT #rat_gr778691_libT1S2 22 1 sblock11601 AGGCAGTGTAATTAGCTGAT #rat_gr178312_libT4S2 20 1 sblock11601 TAGGCAGTGTAATTAGCTGAT #rat_gr778690_libT1S2 21 1 sblock11601 TAGGCAGTGTAATTAGCTGAT #rat_gr778690_libT5S1 21 1 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT2S2 19 1 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT4S2 19 1 sblock11601 AGGCAGTGTAATTAGCTGA #rat_gr178311_libT5S2 19 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT2S1 20 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT2S2 20 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT3S2 20 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT4S2 20 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT5S1 20 1 sblock11601 TAGGCAGTGTAATTAGCTGA #rat_gr778689_libT5S2 20 1 sblock11601 AGGCAGTGTAATTAGCTG #rat_gr178310_libT2S2 18 1 sblock11601 TAGGCAGTGTAATTAGCTG #rat_gr778688_libT2S1 19 1 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT2S2 18 1 sblock11601 TAGGCAGTGTAATTAGCT #rat_gr778687_libT3S1 18 1 sblock11601 --------------------GTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCAC------------------- humanZ3p85 GCTGCAGCCGCGGGTGCCCGGTGCTCGGTTTGTAGGCAGTGTCATTAGCTGATTGTACTGTGGTGGTTACAATCACTAACTCCACTGCCATCAAAACAAGGCACAGCATCACCGCCGCCCGGC mouseZ3p85 ---GCAGTGGCGGGCGCCCGGTGCTCGGTTTGTAGGCAGTGTAATTAGCTGATTGTAGTGCGGTGCTGACAATCACTAACTCCACTGCCATCAAAACAAGGCACAGCATCACCCGCCGCCCGC ********************** ************** ** **** * ************************************ sblock11601 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053684 ENSRNOG00000035561 rno-mir-34b sblock11601 (((((..((((...(((((((...((((.((((((((((.....))).)))))))))))...)))))))....))))..))))) 1.000 -34.10 # humanZ3p85 ((((..((.((((((((...(((((..((((...(((((((...((((.((((((((((.....))).)))))))))))...)))))))....))))..))))).))))..)))).)).)))) 1.000 -52.60 # mouseZ3p85 ((.((((((((.((...(((((..((((...(((((((...((((.((((((((((.....)))).))))))))))...)))))))....))))..))))).))....))))))))..)) 1.000 -53.90 # #sblock11601 chromosome:8:54422570:54422653:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053684|ENSRNOG00000035561 ## ENSRNOG00000035561|miRNA|rno-mir-34b|rno-mir-34b [Source:miRBase;Acc:MI0000875] ## {MIR: rno-mir-34b} #humanZ3p85 chromosome:11:110888853:110888975:1 Same_strand|Boundary_non-coding|ENST00000385076|ENSG00000207811|miRNA|hsa-mir-34b [Source:miRBase;Acc:MI0000742] ## {SimpF: oe = 0.86 0 CpG,rank = 1 1 FirstEF} ## {MIR: hsa-mir-34b} #mouseZ3p85 chromosome:9:50911648:50911767:-1 Same_strand|Boundary_non-coding|ENSMUST00000083558|ENSMUSG00000065492|miRNA|mmu-mir-34b [Source:miRBase;Acc:MI0000404] ## {SimpF: oe = 0.85 -1 CpG} ## {MIR: mmu-mir-34b} ========== sblock11750 (miRBase rno-mir-190) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11750: 0.001 randfold humanZ10p85_sblock11750: 0.001 randfold mouseZ11p85_sblock11750: 0.001 #forester humanZ10p85_sblock11750: 0.976847 forester mouseZ11p85_sblock11750: 1 #identity: 99.29 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT1S1 22 37 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT1S1 18 31 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT1S2 18 16 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT1S2 22 15 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT5S2 22 14 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT5S1 22 12 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT5S1 24 10 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT4S1 22 10 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT4S2 22 9 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT1S2 21 9 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT2S2 18 9 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT1S1 24 8 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT1S1 21 8 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT5S1 18 8 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT1S2 21 7 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT5S1 21 7 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT1S1 19 7 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT1S1 23 6 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT5S1 22 6 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT1S1 21 6 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT5S1 20 6 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT4S1 18 6 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT5S1 21 5 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT1S1 20 5 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT1S2 22 4 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT2S2 22 4 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT4S2 22 4 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT4S2 21 4 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT2S2 22 4 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT4S2 20 4 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT1S2 23 3 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT1S2 24 3 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT2S1 24 3 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT4S1 24 3 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT1S1 22 3 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT5S2 22 3 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT2S2 21 3 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT4S1 21 3 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT2S1 22 3 sblock11750 ACTATATATCAAGCATATTCCT #rat_gr116033_libT3S1 22 3 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT2S2 19 3 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT4S1 19 3 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT5S1 19 3 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT5S2 19 3 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT2S2 20 3 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT5S2 20 3 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT2S1 18 3 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT3S1 18 3 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT4S2 18 3 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT2S2 23 2 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT3S1 23 2 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT4S2 23 2 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT3S1 22 2 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT5S2 21 2 sblock11750 CTATATATCAAGCATATTCC #rat_gr414647_libT2S2 20 2 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT2S1 21 2 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT4S2 21 2 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT3S1 19 2 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT4S1 20 2 sblock11750 ACTATATATCAAGCATATT #rat_gr116030_libT1S2 19 2 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT5S2 18 2 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT2S1 23 1 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT5S1 23 1 sblock11750 CTATATATCAAGCATATTCCTAC #rat_gr414650_libT5S2 23 1 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT2S2 24 1 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT4S2 24 1 sblock11750 ACTATATATCAAGCATATTCCTAC #rat_gr116035_libT5S2 24 1 sblock11750 CTATATATCAAGCATATTCCTA #rat_gr414649_libT4S1 22 1 sblock11750 ACTATATATCAAGCATATTCCTA #rat_gr116034_libT1S2 23 1 sblock11750 ACTATATATCAAGCATATTCCTA #rat_gr116034_libT2S1 23 1 sblock11750 CTATATATCAAGCATATTCCT #rat_gr414648_libT3S1 21 1 sblock11750 CTATATATCAAGCATATTCC #rat_gr414647_libT1S1 20 1 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT2S2 21 1 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT3S2 21 1 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT4S1 21 1 sblock11750 ACTATATATCAAGCATATTCC #rat_gr116032_libT5S2 21 1 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT1S2 19 1 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT2S1 19 1 sblock11750 CTATATATCAAGCATATTC #rat_gr414646_libT4S2 19 1 sblock11750 ACTATATATCAAGCATATTC #rat_gr116031_libT1S2 20 1 sblock11750 CTATATATCAAGCATATT #rat_gr414645_libT1S1 18 1 sblock11750 ACTATATATCAAGCATAT #rat_gr116029_libT3S2 18 1 sblock11750 CAACTATATATCAAGCATA #rat_gr265750_libT1S1 19 1 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT1S1 23 67 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT1S2 23 67 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT1S1 22 52 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT1S2 22 36 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT5S2 23 25 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT1S1 20 25 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT4S2 20 25 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT5S1 23 23 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT2S2 23 21 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT1S2 20 20 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT5S2 20 20 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT5S1 22 19 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT1S1 21 18 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT1S2 21 18 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT4S1 23 16 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT3S1 23 14 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT5S2 21 14 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT1S1 19 14 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT1S1 18 14 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT4S2 23 13 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT5S2 22 13 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT4S1 22 11 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT5S1 20 11 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT2S1 23 10 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT4S2 22 9 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT4S2 21 9 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT1S2 18 9 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT3S1 22 8 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT5S1 21 8 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT3S1 20 8 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT4S1 20 8 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT2S2 21 7 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT2S1 20 7 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT2S2 20 7 sblock11750 ATGTTTGATATATTAGGT #rat_gr238990_libT1S2 18 6 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT2S1 22 6 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT2S2 22 6 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT5S2 24 5 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT4S1 21 5 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT1S2 19 5 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT2S2 19 5 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT4S2 18 5 sblock11750 ATGTTTGATATATTAGGTT #rat_gr238991_libT2S1 19 4 sblock11750 TGATATGTTTGATATATTAGGTT #rat_gr954544_libT3S2 23 4 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libT3S2 22 4 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT5S2 19 4 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT4S2 24 3 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT5S1 24 3 sblock11750 ATGTTTGATATATTAGGT #rat_gr238990_libT1S1 18 3 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT2S1 21 3 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT3S1 21 3 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT5S1 19 3 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT2S2 18 3 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT4S1 18 3 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT5S1 18 3 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT5S2 18 3 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT1S2 24 2 sblock11750 ATGTTTGATATATTAGGTT #rat_gr238991_libT1S1 19 2 sblock11750 TGATATGTTTGATATATTAG #rat_gr954541_libT3S2 20 2 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT4S1 19 2 sblock11750 TGATATGTTTGATATATTA #rat_gr954540_libT4S2 19 2 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT2S1 18 2 sblock11750 TGATATGTTTGATATATTAGGTTGT #rat_gr954546_libT1S2 25 1 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT1S1 24 1 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT2S2 24 1 sblock11750 TGATATGTTTGATATATTAGGTTG #rat_gr954545_libT3S2 24 1 sblock11750 TGTTTGATATATTAGGTT #rat_gr1094421_libT1S1 18 1 sblock11750 ATGTTTGATATATTAGGTT #rat_gr238991_libT1S2 19 1 sblock11750 ATGTTTGATATATTAGGTT #rat_gr238991_libT5S1 19 1 sblock11750 GATATGTTTGATATATTAGGTT #rat_gr519346_libT1S1 22 1 sblock11750 GATATGTTTGATATATTAGGTT #rat_gr519346_libT3S2 22 1 sblock11750 GATATGTTTGATATATTAGGTT #rat_gr519346_libT5S2 22 1 sblock11750 ATGTTTGATATATTAGGT #rat_gr238990_libT5S1 18 1 sblock11750 GATATGTTTGATATATTAGGT #rat_gr519345_libT1S2 21 1 sblock11750 GATATGTTTGATATATTAGGT #rat_gr519345_libT5S1 21 1 sblock11750 TGATATGTTTGATATATTAGGT #rat_gr954543_libMirbase_rno-miR-190 22 1 sblock11750 GATATGTTTGATATATTAGG #rat_gr519344_libT1S1 20 1 sblock11750 GATATGTTTGATATATTAGG #rat_gr519344_libT2S1 20 1 sblock11750 TGATATGTTTGATATATTAGG #rat_gr954542_libT3S2 21 1 sblock11750 TGATATGTTTGATATATT #rat_gr954539_libT3S1 18 1 sblock11750 GTGATATGTTTGATATATT #rat_gr645456_libT5S1 19 1 sblock11750 ---------------TGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAGCATATTCCTACAGTGTCTTGCC----------- humanZ10p85 CCTGGATGCCTTTTCTGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCTTGCCCTGTCTCCGGG mouseZ11p85 CCTGGATGCCTTTTCTGCAGGCCTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAGCATATTCCTACAGTGTCTTGCCCTGTCTCCGGG ************************************************************** ********************** sblock11750 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000031988 ENSRNOG00000018373 Tln2 sblock11750 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000024885 ENSRNOG00000018373 Tln2 sblock11750 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000012026 ENSRNOG00000018373 Tln2 sblock11750 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053707 ENSRNOG00000035584 rno-mir-190 sblock11750 .(((((.(.(((((..(((((((((((((((..(((((..........))))))))))))))))))))..).)))).).))))). 1.000 -32.50 # humanZ10p85 ((((((.((.......(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...)))))...)).)))))) 0.993 -38.70 # mouseZ11p85 ((((((.((.......(((((...(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))...)))))...)).)))))) 0.993 -38.70 # #sblock11750 chromosome:8:71549023:71549107:-1 Same_strand|Intronic_coding|ENSRNOT00000031988|ENSRNOG00000018373 ## Same_strand|Exonic_non-coding|ENSRNOT00000053707|ENSRNOG00000035584 ## ENSRNOG00000035584|miRNA|rno-mir-190|rno-mir-190 [Source:miRBase;Acc:MI0000933] ## ENSRNOG00000018373|protein_coding|Tln2|talin 2 Gene [Source:MGI Symbol;Acc:MGI:1917799] ## {MIR: rno-mir-190} #humanZ10p85 chromosome:15:60903194:60903304:1 Same_strand|Intronic_coding|ENST00000306829|ENSG00000171914|protein_coding|Talin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9Y4G6] ## Same_strand|Boundary_non-coding|ENST00000388402|ENSG00000211137|miRNA|hsa-mir-190 [Source:miRBase;Acc:MI0000486] ## {MIR: hsa-mir-190} #mouseZ11p85 chromosome:9:67084447:67084557:-1 Same_strand|Intronic_coding|ENSMUST00000034771|ENSMUSG00000052698|protein_coding|talin 2 Gene [Source:MGI Symbol;Acc:MGI:1917799] ## Same_strand|Boundary_non-coding|ENSMUST00000102424|ENSMUSG00000076379|miRNA|mmu-mir-190 [Source:miRBase;Acc:MI0000232] ## {MIR: mmu-mir-190} ========== sblock11979 (miRBase rno-mir-100) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11979: 0.003 randfold humanZ17p85_sblock11979: 0.015 randfold mouseZ21p85_sblock11979: 0.001 #forester humanZ17p85_sblock11979: 0.755559 forester mouseZ21p85_sblock11979: 0.930159 #identity: 91.74 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT1S1 20 4997 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT1S1 21 4734 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT4S2 20 4422 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT1S2 20 4290 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT1S2 21 3945 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT4S2 21 3026 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT4S1 20 2657 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT1S2 19 2554 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT1S1 18 2439 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT4S1 21 1978 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT1S1 19 1950 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT1S1 23 1907 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT5S2 21 1766 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT1S2 18 1650 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT4S2 18 1643 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT4S2 19 1545 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT3S1 20 1521 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT1S1 22 1317 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT4S2 22 1211 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT3S1 21 1163 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT4S1 18 1122 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT5S1 20 1070 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT5S1 21 1013 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT4S1 22 953 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT4S1 19 930 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT5S2 20 805 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT3S2 20 797 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT1S2 23 768 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT2S2 21 760 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT4S2 23 749 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT3S2 21 726 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT1S2 22 664 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT4S1 23 622 sblock11979 AACCCGTAGATCCGAACTTGT #rat_gr33417_libT2S1 21 538 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT3S1 18 476 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT5S2 18 464 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT2S2 20 441 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT5S1 18 430 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT5S1 19 428 sblock11979 AACCCGTAGATCCGAACTTG #rat_gr33416_libT2S1 20 408 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT3S1 19 405 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT5S2 19 333 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT5S1 22 295 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT5S2 23 286 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT5S2 22 279 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT3S2 19 278 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT5S1 23 241 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT3S1 22 236 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT3S2 18 210 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT2S2 19 181 sblock11979 AACCCGTAGATCCGAACTT #rat_gr33415_libT2S1 19 177 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT2S1 18 158 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT1S1 19 143 sblock11979 AACCCGTAGATCCGAACT #rat_gr33414_libT2S2 18 141 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT3S2 22 117 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT1S2 19 108 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT2S1 22 90 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT4S2 19 90 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libT2S2 22 65 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT1S1 22 65 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT3S2 23 53 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT4S1 19 52 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT3S1 23 48 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT1S2 22 48 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT1S1 20 40 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT2S1 23 38 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT1S1 18 38 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT1S2 18 36 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT1S1 21 36 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT1S2 20 35 sblock11979 AACCCGTAGATCCGAACTTGTGC #rat_gr33419_libT2S2 23 34 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT5S1 19 29 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT3S1 19 23 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT4S1 22 23 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT4S2 22 22 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT1S1 22 21 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT5S2 19 21 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT1S2 22 20 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT4S2 21 19 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT4S2 18 18 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT1S2 21 17 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT4S1 22 16 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT4S2 22 15 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT5S1 22 15 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT4S1 18 14 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT4S2 20 13 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT5S2 22 12 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT2S1 22 11 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT1S2 21 10 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT2S2 22 10 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT4S1 20 10 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT3S1 21 9 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT3S2 22 9 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT5S2 18 9 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT1S1 21 8 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT3S1 22 8 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT3S2 19 8 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT4S1 21 8 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT4S1 21 7 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT4S2 21 7 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT5S1 21 7 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT4S2 24 7 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT4S2 19 6 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT2S1 21 6 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT2S2 21 6 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT5S2 21 6 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT2S1 19 6 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT3S2 22 6 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT5S2 22 6 sblock11979 AAACCCGTAGATCCGAACTTGT #rat_gr13468_libT5S1 22 5 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT1S1 24 5 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT3S1 18 5 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT5S1 18 5 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT3S1 20 5 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT5S1 20 5 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT5S2 20 5 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT3S1 21 5 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT5S1 21 5 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT5S2 21 5 sblock11979 AAACCCGTAGATCCGAACTTG #rat_gr13467_libT3S2 21 4 sblock11979 ACCCGTAGATCCGAACTTG #rat_gr98539_libT2S2 19 4 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT2S1 20 4 sblock11979 CCCGTAGATCCGAACTTGT #rat_gr357877_libT1S1 19 4 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT4S1 24 3 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT2S2 18 3 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT1S1 18 2 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT4S1 19 2 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT5S2 19 2 sblock11979 ACCCGTAGATCCGAACTT #rat_gr98538_libT3S2 18 2 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT2S2 20 2 sblock11979 ACCCGTAGATCCGAACTTGT #rat_gr98540_libT3S2 20 2 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT3S2 21 2 sblock11979 CCCGTAGATCCGAACTTG #rat_gr357876_libT4S1 18 2 sblock11979 CCCGTAGATCCGAACTTG #rat_gr357876_libT4S2 18 2 sblock11979 CCCGTAGATCCGAACTTGTGC #rat_gr357879_libT4S2 21 2 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT1S2 18 1 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT2S2 18 1 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT4S2 18 1 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT5S1 18 1 sblock11979 AAACCCGTAGATCCGAAC #rat_gr13465_libT5S2 18 1 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT1S2 19 1 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT2S1 19 1 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT2S2 19 1 sblock11979 AAACCCGTAGATCCGAACT #rat_gr13466_libT3S2 19 1 sblock11979 AAACCCGTAGATCCGAACTTGTG #rat_gr13469_libT1S2 23 1 sblock11979 AAACCCGTAGATCCGAACTTGTG #rat_gr13469_libT4S1 23 1 sblock11979 AAACCCGTAGATCCGAACTTGTG #rat_gr13469_libT5S1 23 1 sblock11979 AAACCCGTAGATCCGAACTTGTGC #rat_gr13470_libT4S1 24 1 sblock11979 AACCCGTAGATCCGAACTTGTG #rat_gr33418_libMirbase_rno-miR-100 22 1 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT1S2 24 1 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT3S2 24 1 sblock11979 AACCCGTAGATCCGAACTTGTGCT #rat_gr33420_libT5S2 24 1 sblock11979 ACCCGTAGATCCGAACTTGTG #rat_gr98541_libT2S1 21 1 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT2S1 22 1 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT2S2 22 1 sblock11979 ACCCGTAGATCCGAACTTGTGC #rat_gr98542_libT3S1 22 1 sblock11979 CCCGTAGATCCGAACTTG #rat_gr357876_libT1S1 18 1 sblock11979 CCCGTAGATCCGAACTTG #rat_gr357876_libT3S2 18 1 sblock11979 CCCGTAGATCCGAACTTGT #rat_gr357877_libT2S1 19 1 sblock11979 CCCGTAGATCCGAACTTGT #rat_gr357877_libT2S2 19 1 sblock11979 CCCGTAGATCCGAACTTGT #rat_gr357877_libT4S1 19 1 sblock11979 CCCGTAGATCCGAACTTGT #rat_gr357877_libT5S2 19 1 sblock11979 CCCGTAGATCCGAACTTGTG #rat_gr357878_libT1S1 20 1 sblock11979 CCCGTAGATCCGAACTTGTG #rat_gr357878_libT2S2 20 1 sblock11979 CCCGTAGATCCGAACTTGTG #rat_gr357878_libT4S1 20 1 sblock11979 CCCGTAGATCCGAACTTGTG #rat_gr357878_libT4S2 20 1 sblock11979 CCGTAGATCCGAACTTGT #rat_gr369230_libT1S2 18 1 sblock11979 CCGTAGATCCGAACTTGT #rat_gr369230_libT3S1 18 1 sblock11979 CCGTAGATCCGAACTTGT #rat_gr369230_libT5S2 18 1 sblock11979 CCGTAGATCCGAACTTGTG #rat_gr369231_libT1S2 19 1 sblock11979 CGTAGATCCGAACTTGTG #rat_gr403649_libT4S1 18 1 sblock11979 GTAGATCCGAACTTGTGC #rat_gr629673_libT1S1 18 1 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT1S1 21 49 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT1S2 21 36 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT1S1 19 32 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT1S1 22 23 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT4S2 19 20 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT4S1 21 18 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT1S2 19 17 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT1S1 20 14 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT4S2 21 12 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT1S2 23 12 sblock11979 CAAGCTTGTGTCTATAGGTA #rat_gr269797_libT1S2 20 11 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT3S1 21 11 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT1S1 23 11 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT1S2 22 10 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT4S2 23 10 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT4S2 20 8 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT4S1 20 7 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT4S1 19 7 sblock11979 ACAAGCTTGTGTCTATAGG #rat_gr69691_libT4S2 19 6 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT1S1 18 6 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT3S1 19 6 sblock11979 CAAGCTTGTGTCTATAGGTA #rat_gr269797_libT1S1 20 6 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT3S1 20 5 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT2S2 21 5 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT5S2 21 5 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT5S1 23 5 sblock11979 ACAAGCTTGTGTCTATAG #rat_gr69690_libT4S2 18 4 sblock11979 ACAAGCTTGTGTCTATAGG #rat_gr69691_libT1S1 19 4 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT1S2 20 4 sblock11979 ACAAGCTTGTGTCTATAGGTAT #rat_gr69694_libT1S1 22 4 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT3S1 18 4 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT5S1 21 4 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT4S2 22 4 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT3S1 23 4 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT4S1 23 4 sblock11979 ACAAGCTTGTGTCTATAG #rat_gr69690_libT1S2 18 3 sblock11979 ACAAGCTTGTGTCTATAG #rat_gr69690_libT4S1 18 3 sblock11979 ACAAGCTTGTGTCTATAGG #rat_gr69691_libT4S1 19 3 sblock11979 ACAAGCTTGTGTCTATAGGTAT #rat_gr69694_libT1S2 22 3 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT1S2 18 3 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT5S1 19 3 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT3S2 21 3 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT3S2 22 3 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT4S1 22 3 sblock11979 ACAAGCTTGTGTCTATAGG #rat_gr69691_libT3S1 19 2 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT5S1 20 2 sblock11979 ACAAGCTTGTGTCTATAGGTAT #rat_gr69694_libT4S2 22 2 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT4S1 18 2 sblock11979 CAAGCTTGTGTCTATAGGTA #rat_gr269797_libT4S1 20 2 sblock11979 CAAGCTTGTGTCTATAGGTA #rat_gr269797_libT4S2 20 2 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT5S1 22 2 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT5S2 22 2 sblock11979 AAGCTTGTGTCTATAGGTATGT #rat_gr48982_libT1S2 22 2 sblock11979 ACAAGCTTGTGTCTATAG #rat_gr69690_libT1S1 18 1 sblock11979 ACAAGCTTGTGTCTATAGG #rat_gr69691_libT2S2 19 1 sblock11979 ACAAGCTTGTGTCTATAGGT #rat_gr69692_libT3S2 20 1 sblock11979 ACAAGCTTGTGTCTATAGGTA #rat_gr69693_libT3S1 21 1 sblock11979 ACAAGCTTGTGTCTATAGGTA #rat_gr69693_libT4S2 21 1 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT3S2 18 1 sblock11979 CAAGCTTGTGTCTATAGG #rat_gr269795_libT4S2 18 1 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT2S2 19 1 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT3S2 19 1 sblock11979 CAAGCTTGTGTCTATAGGT #rat_gr269796_libT5S2 19 1 sblock11979 CAAGCTTGTGTCTATAGGTAT #rat_gr269798_libT2S1 21 1 sblock11979 CAAGCTTGTGTCTATAGGTATG #rat_gr269799_libT3S1 22 1 sblock11979 CAAGCTTGTGTCTATAGGTATGT #rat_gr269800_libT5S2 23 1 sblock11979 AAGCTTGTGTCTATAGGTATG #rat_gr48981_libT1S2 21 1 sblock11979 AAGCTTGTGTCTATAGGTATGT #rat_gr48982_libT1S1 22 1 sblock11979 -----------------CCTGTTGCCACAAACCCGTAGATCCGAACTTGTGCTGACCATGCACACAAGCTTGTGTCTATAGGTATGTGTCTGTTAGG------- humanZ17p85 GAGAGAAGATATTGAGGCCTGTTGCCACAAACCCGTAGATCCGAACTTGTGGTATTAGTCCGCACAAGCTTGTATCTATAGGTATGTGTCTGTTAGGCAATCTC mouseZ21p85 ----------------GCCTGTTGCCACAAACCCGTAGATCCGAACTTGTGCTGATTCTGCACACAAGCTTGTGTCTATAGGTATGTGTCTGTTAGGC------ ********************************** * * * *********** *********************** sblock11979 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053625 ENSRNOG00000035502 rno-mir-100 sblock11979 ((((..(.((((.(((..((((..(((.((((((.((......)))))))).)))..))))..))).)))).)...)))) 1.000 -28.80 # humanZ17p85 ((((............(((((....((((.(((..(((((.(((.((((((...........)))))).))).)))))..))).)))).....)))))..)))) 0.937 -31.74 # mouseZ21p85 (((((....((((.(((..((((..(((.((((((.((......)))))))).)))..))))..))).)))).....))))) 1.000 -31.30 # #sblock11979 chromosome:8:44518670:44518749:1 Same_strand|Exonic_non-coding|ENSRNOT00000053625|ENSRNOG00000035502 ## ENSRNOG00000035502|miRNA|rno-mir-100|rno-mir-100 [Source:miRBase;Acc:MI0000885] ## {MIR: rno-mir-100} #humanZ17p85 chromosome:11:121528140:121528243:-1 Same_strand|Boundary_non-coding|ENST00000385259|ENSG00000207994|miRNA|hsa-mir-100 [Source:miRBase;Acc:MI0000102] ## {MIR: hsa-mir-100} #mouseZ21p85 chromosome:9:41339507:41339588:1 Same_strand|Boundary_non-coding|ENSMUST00000083642|ENSMUSG00000065576|miRNA|mmu-mir-100 [Source:miRBase;Acc:MI0000692] ## {MIR: mmu-mir-100} ========== sblock11980 (miRBase rno-let-7a-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock11980: 0.001 randfold humanZ18p85_sblock11980: 0.001 randfold mouseZ22p85_sblock11980: 0.001 #forester humanZ18p85_sblock11980: 0.913603 forester mouseZ22p85_sblock11980: 0.935807 #identity: 95.18 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT1S1 20 5335 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT1S1 22 4122 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT1S1 21 4106 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT5S2 22 3551 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT5S2 20 3465 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT1S2 20 3302 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT3S1 20 3120 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT3S2 20 2909 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT1S1 18 2887 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT4S2 20 2747 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT5S2 21 2680 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT1S2 22 2565 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT3S1 21 2459 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT2S2 20 2450 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT1S2 21 2352 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT3S2 21 2299 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT3S2 22 2192 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT4S2 21 2165 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT3S1 22 2092 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT2S2 22 2030 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT4S2 22 2022 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT1S1 19 2005 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT5S1 20 1976 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT2S1 20 1899 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT2S2 21 1848 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT5S1 22 1798 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT5S1 21 1648 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT2S1 22 1632 sblock11980 TGAGGTAGTAGGTTGTATAG #rat_gr949686_libT4S1 20 1620 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT2S1 21 1507 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT1S2 18 1458 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT5S2 18 1446 sblock11980 TGAGGTAGTAGGTTGTATAGT #rat_gr949687_libT4S1 21 1312 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT3S1 19 1281 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT4S2 18 1181 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT3S1 18 1136 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT5S2 19 1106 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT1S2 19 1095 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT4S2 19 1051 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT3S2 19 1038 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT3S2 18 976 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT2S2 19 953 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT5S1 18 921 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT2S2 18 882 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libT4S1 22 773 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT5S1 19 736 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT4S1 18 677 sblock11980 TGAGGTAGTAGGTTGTAT #rat_gr949684_libT2S1 18 666 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT2S1 19 659 sblock11980 TGAGGTAGTAGGTTGTATA #rat_gr949685_libT4S1 19 535 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT2S2 23 288 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT1S1 23 240 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT4S2 23 229 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT3S1 23 209 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT5S2 23 194 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT2S1 23 184 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT1S2 23 180 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT3S2 23 164 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT4S1 23 152 sblock11980 TGAGGTAGTAGGTTGTATAGTTT #rat_gr949689_libT5S1 23 139 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT1S1 19 46 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT1S2 19 37 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT5S2 19 34 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT2S2 19 32 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT1S1 21 32 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT5S2 21 32 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT4S2 19 29 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT1S1 18 28 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT3S1 19 27 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT5S2 20 27 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT3S2 19 25 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT4S1 19 23 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT1S1 20 23 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT2S1 21 22 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT2S1 19 21 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT3S1 21 21 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT5S1 20 19 sblock11980 GAGGTAGTAGGTTGTATAG #rat_gr514534_libT5S1 19 18 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT3S2 20 17 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT4S2 20 17 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT1S2 18 16 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT4S2 21 16 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT3S2 21 15 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT3S1 20 14 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT1S2 21 14 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT1S1 18 14 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT3S1 18 13 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT1S2 20 13 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT2S2 21 12 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT2S2 18 11 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT3S2 18 11 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT4S1 20 11 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT5S1 21 11 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT2S2 18 11 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT2S1 18 10 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT2S2 20 9 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT4S2 18 8 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT5S1 24 7 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT5S1 18 7 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT5S2 18 6 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT2S1 24 5 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT2S2 24 5 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT4S2 24 5 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT5S2 24 5 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT2S1 18 5 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT5S2 18 5 sblock11980 GAGGTAGTAGGTTGTATAGT #rat_gr514535_libT2S1 20 5 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT3S1 18 5 sblock11980 GAGGTAGTAGGTTGTATAGTT #rat_gr514536_libT4S1 21 4 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT1S2 18 4 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT4S2 18 4 sblock11980 CTGAGGTAGTAGGTTGTA #rat_gr439543_libT2S2 18 3 sblock11980 CTGAGGTAGTAGGTTGTATAG #rat_gr439545_libT1S2 21 3 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT3S1 24 3 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT3S2 24 3 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT3S2 18 3 sblock11980 CTGAGGTAGTAGGTTGTATAG #rat_gr439545_libT1S1 21 2 sblock11980 CTGAGGTAGTAGGTTGTATAGT #rat_gr439546_libT1S1 22 2 sblock11980 CTGAGGTAGTAGGTTGTATAGTT #rat_gr439547_libT5S2 23 2 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT1S2 24 2 sblock11980 GAGGTAGTAGGTTGTATA #rat_gr514533_libT4S1 18 2 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT2S1 22 2 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT2S2 22 2 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT4S2 22 2 sblock11980 GGTAGTAGGTTGTATAGTT #rat_gr618543_libT2S1 19 2 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT5S1 18 2 sblock11980 GCTGAGGTAGTAGGTTGTATAG #rat_gr571753_libT3S1 22 1 sblock11980 CTGAGGTAGTAGGTTGTA #rat_gr439543_libT1S1 18 1 sblock11980 CTGAGGTAGTAGGTTGTA #rat_gr439543_libT1S2 18 1 sblock11980 CTGAGGTAGTAGGTTGTA #rat_gr439543_libT5S2 18 1 sblock11980 CTGAGGTAGTAGGTTGTAT #rat_gr439544_libT1S1 19 1 sblock11980 CTGAGGTAGTAGGTTGTAT #rat_gr439544_libT1S2 19 1 sblock11980 CTGAGGTAGTAGGTTGTAT #rat_gr439544_libT3S1 19 1 sblock11980 CTGAGGTAGTAGGTTGTAT #rat_gr439544_libT4S2 19 1 sblock11980 CTGAGGTAGTAGGTTGTATAG #rat_gr439545_libT2S2 21 1 sblock11980 CTGAGGTAGTAGGTTGTATAGT #rat_gr439546_libT2S1 22 1 sblock11980 CTGAGGTAGTAGGTTGTATAGTT #rat_gr439547_libT1S1 23 1 sblock11980 TGAGGTAGTAGGTTGTATAGTT #rat_gr949688_libMirbase_rno-let-7a 22 1 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT1S1 24 1 sblock11980 TGAGGTAGTAGGTTGTATAGTTTA #rat_gr949690_libT4S1 24 1 sblock11980 TGAGGTAGTAGGTTGTATAGTTTAG #rat_gr949691_libT2S2 25 1 sblock11980 TGAGGTAGTAGGTTGTATAGTTTAGA #rat_gr949692_libT3S1 26 1 sblock11980 TGAGGTAGTAGGTTGTATAGTTTAGA #rat_gr949692_libT4S2 26 1 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT1S1 22 1 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT3S2 22 1 sblock11980 GAGGTAGTAGGTTGTATAGTTT #rat_gr514537_libT4S1 22 1 sblock11980 GAGGTAGTAGGTTGTATAGTTTA #rat_gr514538_libT3S1 23 1 sblock11980 GAGGTAGTAGGTTGTATAGTTTA #rat_gr514538_libT5S2 23 1 sblock11980 AGGTAGTAGGTTGTATAG #rat_gr190468_libT2S2 18 1 sblock11980 AGGTAGTAGGTTGTATAG #rat_gr190468_libT3S1 18 1 sblock11980 AGGTAGTAGGTTGTATAG #rat_gr190468_libT3S2 18 1 sblock11980 AGGTAGTAGGTTGTATAGT #rat_gr190469_libT1S1 19 1 sblock11980 AGGTAGTAGGTTGTATAGT #rat_gr190469_libT2S1 19 1 sblock11980 AGGTAGTAGGTTGTATAGT #rat_gr190469_libT3S2 19 1 sblock11980 AGGTAGTAGGTTGTATAGT #rat_gr190469_libT5S1 19 1 sblock11980 AGGTAGTAGGTTGTATAGT #rat_gr190469_libT5S2 19 1 sblock11980 AGGTAGTAGGTTGTATAGTT #rat_gr190470_libT3S1 20 1 sblock11980 GGTAGTAGGTTGTATAGTT #rat_gr618543_libT1S1 19 1 sblock11980 GGTAGTAGGTTGTATAGTT #rat_gr618543_libT5S2 19 1 sblock11980 GTAGTAGGTTGTATAGTT #rat_gr630584_libT4S1 18 1 sblock11980 TAGAGTTACAACAAGGGA #rat_gr763618_libT1S1 18 1 sblock11980 TAGAGTTACAACAAGGGAGA #rat_gr763619_libT1S2 20 1 sblock11980 TAGAGTTACAACAAGGGAGA #rat_gr763619_libT3S1 20 1 sblock11980 TAGAGTTACAACAAGGGAGA #rat_gr763619_libT3S2 20 1 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT1S2 22 17 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT1S1 22 15 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT1S1 19 11 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT1S2 19 11 sblock11980 CTGTACAGCCTCCTAGCT #rat_gr453477_libT1S2 18 10 sblock11980 CTGTACAGCCTCCTAGCT #rat_gr453477_libT1S1 18 9 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT4S2 22 6 sblock11980 CTGTACAGCCTCCTAGCT #rat_gr453477_libT4S2 18 4 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT4S2 19 4 sblock11980 CTGTACAGCCTCCTAGCTTTC #rat_gr453480_libT1S1 21 4 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT4S1 22 4 sblock11980 CTGTACAGCCTCCTAGCT #rat_gr453477_libT3S1 18 3 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT4S1 19 3 sblock11980 ACTGTACAGCCTCCTAGCTTTCC #rat_gr126418_libT1S1 23 2 sblock11980 CTGTACAGCCTCCTAGCT #rat_gr453477_libT5S2 18 2 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT2S1 22 2 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT5S1 22 2 sblock11980 ACTGTACAGCCTCCTAGC #rat_gr126414_libT3S2 18 1 sblock11980 ACTGTACAGCCTCCTAGCT #rat_gr126415_libT4S2 19 1 sblock11980 ACTGTACAGCCTCCTAGCTT #rat_gr126416_libT1S2 20 1 sblock11980 ACTGTACAGCCTCCTAGCTTTC #rat_gr126417_libT4S2 22 1 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT2S2 19 1 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT3S1 19 1 sblock11980 CTGTACAGCCTCCTAGCTT #rat_gr453478_libT5S1 19 1 sblock11980 CTGTACAGCCTCCTAGCTTT #rat_gr453479_libT1S2 20 1 sblock11980 CTGTACAGCCTCCTAGCTTTC #rat_gr453480_libT1S2 21 1 sblock11980 CTGTACAGCCTCCTAGCTTTC #rat_gr453480_libT4S2 21 1 sblock11980 CTGTACAGCCTCCTAGCTTTC #rat_gr453480_libT5S1 21 1 sblock11980 CTGTACAGCCTCCTAGCTTTC #rat_gr453480_libT5S2 21 1 sblock11980 CTGTACAGCCTCCTAGCTTTCC #rat_gr453481_libT3S2 22 1 sblock11980 CTGTACAGCCTCCTAGCTTTCCT #rat_gr453482_libT1S1 23 1 sblock11980 CTGTACAGCCTCCTAGCTTTCCT #rat_gr453482_libT1S2 23 1 sblock11980 TGTACAGCCTCCTAGCTTTCCT #rat_gr1075288_libT5S2 22 1 sblock11980 ------------------CGGCATGCTCCCAGGCTGAGGTAGTAGGTTGTATAGTTTAGAGTTACAACAAGGGAGATAACTGTACAGCCTCCTAGCTTTCCTTGGGACTTGCAC------------------- humanZ18p85 GTTTTCCAGCCATTGTGACTGCATGCTCCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACATCAAGGGAGATAACTGTACAGCCTCCTAGCTTTCCTTGGGTCTTGCACTAAACAACATGGTGAGAAC mouseZ22p85 --------GCCATTGTGACTGCATGTTCCCAGGTTGAGGTAGTAGGTTGTATAGTTTAGAGTTACATCAAGGGAGATAACTGTACAGCCTCCTAGCTTTCCTTGGGACTTGCACAAAGCAACATGGC------ * ***** ******* ************************** ***** *************************************** ******* sblock11980 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053671 ENSRNOG00000035548 rno-let-7a-2 sblock11980 ..(((.(.(((((((..(((.(((.(((((((((((((.....................))))))))))))).))).)))..)))))))).))).. 1.000 -39.20 # humanZ18p85 ((((((..((((((((...((((....((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))))...))))....)))..))))))))))) 0.998 -49.80 # mouseZ22p85 ((((((((...((((.((.((((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..)))))))).))))....)))..))))) 0.998 -48.60 # #sblock11980 chromosome:8:44525769:44525864:1 Same_strand|Exonic_non-coding|ENSRNOT00000053671|ENSRNOG00000035548 ## Same_strand|Boundary_non-coding|ENSRNOT00000053671|ENSRNOG00000035548 ## ENSRNOG00000035548|miRNA|rno-let-7a-2|rno-let-7a-2 [Source:miRBase;Acc:MI0000828] ## {MIR: rno-let-7a-2} #humanZ18p85 chromosome:11:121522409:121522541:-1 Same_strand|Boundary_non-coding|ENST00000362105|ENSG00000198975|miRNA|hsa-let-7a-2 [Source:miRBase;Acc:MI0000061] ## {MIR: hsa-let-7a-2} #mouseZ22p85 chromosome:9:41344789:41344907:1 Same_strand|Boundary_non-coding|ENSMUST00000083680|ENSMUSG00000065614|miRNA|mmu-let-7a-2 [Source:miRBase;Acc:MI0000557] ## {MIR: mmu-let-7a-2} ========== sblock12392 (miRBase rno-mir-206) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12392: 0.002 randfold humanZ26p85_sblock12392: 0.001 randfold mouseZ33p85_sblock12392: 0.001 #forester humanZ26p85_sblock12392: 0.812315 forester mouseZ33p85_sblock12392: 0.927207 #identity: 90.38 sblock12392 ACATGCTTCTTTATATCCTCAT #rat_gr84649_libT1S1 22 2 sblock12392 ACATGCTTCTTTATATCCTCAT #rat_gr84649_libT1S2 22 2 sblock12392 ACATGCTTCTTTATATCC #rat_gr84648_libT1S1 18 1 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT1S1 21 71 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT1S1 22 48 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT2S1 21 42 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT1S1 18 40 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT2S1 22 31 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT1S1 20 30 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT2S1 20 26 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT1S1 19 22 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT2S1 19 21 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT4S1 20 21 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT2S2 21 21 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT2S1 18 16 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT1S2 20 16 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT1S2 21 16 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT1S2 18 11 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT2S2 20 11 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT1S2 22 11 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT2S2 22 11 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT2S2 19 9 sblock12392 TGGAATGTAAGGAAGTGTGTGGT #rat_gr990502_libT1S1 23 8 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT5S2 22 7 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT1S2 19 6 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT5S2 20 6 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT5S2 21 6 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT2S2 18 4 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT5S1 21 4 sblock12392 GAATGTAAGGAAGTGTGTG #rat_gr490286_libT2S1 19 4 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT3S1 18 3 sblock12392 TGGAATGTAAGGAAGTGTGTGGT #rat_gr990502_libT2S2 23 3 sblock12392 GGAATGTAAGGAAGTGTGT #rat_gr583913_libT2S1 19 3 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT2S1 20 3 sblock12392 GGAATGTAAGGAAGTGTGTGG #rat_gr583915_libT2S1 21 3 sblock12392 ATGTAAGGAAGTGTGTGG #rat_gr235933_libT2S1 18 3 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT4S2 18 2 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT5S2 19 2 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT3S1 21 2 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT3S1 22 2 sblock12392 GGAATGTAAGGAAGTGTGT #rat_gr583913_libT4S1 19 2 sblock12392 GGAATGTAAGGAAGTGTGT #rat_gr583913_libT4S2 19 2 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT1S1 20 2 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT4S1 20 2 sblock12392 ATGTAAGGAAGTGTGTGG #rat_gr235933_libT2S2 18 2 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT5S1 18 1 sblock12392 TGGAATGTAAGGAAGTGT #rat_gr990497_libT5S2 18 1 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT3S1 19 1 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT4S1 19 1 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT4S2 19 1 sblock12392 TGGAATGTAAGGAAGTGTG #rat_gr990498_libT5S1 19 1 sblock12392 TGGAATGTAAGGAAGTGTGT #rat_gr990499_libT3S1 20 1 sblock12392 TGGAATGTAAGGAAGTGTGTG #rat_gr990500_libT3S2 21 1 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libMirbase_rno-miR-206 22 1 sblock12392 TGGAATGTAAGGAAGTGTGTGG #rat_gr990501_libT5S1 22 1 sblock12392 GGAATGTAAGGAAGTGTG #rat_gr583912_libT1S1 18 1 sblock12392 GGAATGTAAGGAAGTGTG #rat_gr583912_libT2S2 18 1 sblock12392 GGAATGTAAGGAAGTGTG #rat_gr583912_libT5S1 18 1 sblock12392 GGAATGTAAGGAAGTGTG #rat_gr583912_libT5S2 18 1 sblock12392 GGAATGTAAGGAAGTGTGT #rat_gr583913_libT2S2 19 1 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT1S2 20 1 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT2S2 20 1 sblock12392 GGAATGTAAGGAAGTGTGTG #rat_gr583914_libT3S1 20 1 sblock12392 GGAATGTAAGGAAGTGTGTGG #rat_gr583915_libT1S1 21 1 sblock12392 GGAATGTAAGGAAGTGTGTGG #rat_gr583915_libT2S2 21 1 sblock12392 GGAATGTAAGGAAGTGTGTGGT #rat_gr583916_libT3S2 22 1 sblock12392 GGAATGTAAGGAAGTGTGTGGT #rat_gr583916_libT5S2 22 1 sblock12392 GAATGTAAGGAAGTGTGTG #rat_gr490286_libT1S2 19 1 sblock12392 AATGTAAGGAAGTGTGTGGT #rat_gr63877_libT2S1 20 1 sblock12392 ATGTAAGGAAGTGTGTGG #rat_gr235933_libT1S2 18 1 sblock12392 ------------------CTTCCCCAGGCCACATGCTTCTTTATATCCTCATAGATATCACTGCGCTATGGAATGTAAGGAAGTGTGTGGTTTTGGCAAGTG------------- humanZ26p85 ----------------------------CCACATGCTTCTTTATATCCCCATATGGATTACTTTGCTATGGAATGTAAGGAAGTGTGTGG------------------------- mouseZ33p85 GTGCCTCGGAGGACACAGCTTCCCCAGGCCACATGCTTCTTTATATCCTCATAGATATCTCAGCACTATGGAATGTAAGGAAGTGTGTGGTTTTGGCAAGTGCTTCTTCAAGGCC ******************** **** ** * ************************* sblock12392 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053621 ENSRNOG00000035498 rno-mir-206 sblock12392 (((.((.(((((((((((((((((((((.(.(((((...........)))))).))))))))))))))))))))).)).))).. 1.000 -35.10 # humanZ26p85 ((((((((((((((((((..(((((..((.....))..))))).)))))))))))))))))) 1.000 -26.80 # mouseZ33p85 ..((((.((((((....((((.((.(((((((((((((((((((((..((((((...........)))))).))))))))))))))))))))).)).))))..)))))).)))). 1.000 -49.60 # #sblock12392 chromosome:9:19401985:19402068:1 Same_strand|Exonic_non-coding|ENSRNOT00000053621|ENSRNOG00000035498 ## ENSRNOG00000035498|miRNA|rno-mir-206|rno-mir-206 [Source:miRBase;Acc:MI0000948] ## {MIR: rno-mir-206} #humanZ26p85 chromosome:6:52117088:52117211:1 Same_strand|Boundary_non-coding|ENST00000384872|ENSG00000207604|miRNA|hsa-mir-206 [Source:miRBase;Acc:MI0000490] ## {MIR: hsa-mir-206} #mouseZ33p85 chromosome:1:20669068:20669182:1 Same_strand|Boundary_non-coding|ENSMUST00000083625|ENSMUSG00000065559|miRNA|mmu-mir-206 [Source:miRBase;Acc:MI0000249] ## {MIR: mmu-mir-206} ========== sblock12396 (miRBase rno-mir-30a) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12396: 0.001 randfold humanZ29p85_sblock12396: 0.001 randfold mouseZ35p85_sblock12396: 0.001 #forester humanZ29p85_sblock12396: 0.977889 forester mouseZ35p85_sblock12396: 1 #identity: 97.46 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT5S2 23 17903 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT5S1 23 12204 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT5S2 18 11498 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT5S2 24 10567 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT5S2 21 9415 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT5S2 20 8983 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT5S1 18 8216 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT4S2 23 8036 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT5S1 24 7170 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT4S2 18 6786 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT4S1 23 6323 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT5S1 20 6077 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT5S2 19 5643 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT5S1 21 4972 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT4S2 24 4753 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT4S1 18 4726 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT4S2 20 4522 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT1S1 23 4169 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT1S1 18 3899 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT4S1 24 3490 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT4S2 21 3330 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT4S1 20 3204 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT1S1 24 3169 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT5S2 22 3139 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT5S1 19 3049 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT1S1 20 2943 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT3S2 23 2692 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT3S1 23 2595 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT4S2 19 2551 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT4S1 21 2472 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT5S1 22 2466 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT1S1 21 2380 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT1S2 23 2372 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT2S2 23 2371 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT1S2 18 2194 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT3S1 18 2174 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT2S2 18 2155 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT3S2 18 2052 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT3S2 24 1786 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT1S2 24 1723 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT4S2 22 1647 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT2S2 24 1595 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT1S2 20 1576 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT3S1 24 1531 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT3S1 20 1529 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT1S1 19 1525 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT4S1 19 1519 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT3S2 20 1503 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT2S2 20 1494 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT3S2 21 1331 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT1S2 21 1282 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT1S1 22 1113 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT2S2 21 1111 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT3S1 21 1089 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT4S1 22 1061 sblock12396 TGTAAACATCCTCGACTG #rat_gr1073618_libT2S1 18 1042 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT1S2 19 932 sblock12396 TGTAAACATCCTCGACTGGA #rat_gr1073620_libT2S1 20 915 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT2S2 19 861 sblock12396 TGTAAACATCCTCGACTGGAAGCT #rat_gr1073624_libT2S1 24 861 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT3S1 19 852 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT3S2 19 786 sblock12396 TGTAAACATCCTCGACTGGAAGC #rat_gr1073623_libT2S1 23 610 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT1S2 22 564 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT2S2 22 540 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT3S2 22 537 sblock12396 TGTAAACATCCTCGACTGGAA #rat_gr1073621_libT2S1 21 517 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT3S1 22 515 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libT2S1 22 434 sblock12396 TGTAAACATCCTCGACTGG #rat_gr1073619_libT2S1 19 403 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT5S2 22 324 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT5S2 23 308 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT5S1 23 270 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT5S1 22 254 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT5S2 20 208 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT5S2 19 181 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT4S2 22 180 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT4S2 23 177 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT4S1 22 141 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT5S1 19 138 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT5S1 20 123 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT5S2 18 122 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT4S2 19 122 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT1S1 23 120 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT4S1 23 120 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT4S2 20 111 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT5S2 21 93 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT1S1 22 91 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT5S1 21 88 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT5S1 18 80 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT4S1 19 78 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT4S1 20 78 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT1S2 23 77 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT1S1 20 72 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT1S1 19 64 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT1S2 22 64 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT3S1 23 64 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT4S2 18 62 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT3S1 22 60 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT2S2 22 59 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT3S2 22 56 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT3S2 23 55 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT2S2 23 51 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT4S2 21 45 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT3S1 20 44 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT1S2 19 39 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT4S1 21 39 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT1S1 18 38 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT1S1 21 35 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT2S1 19 34 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT3S2 19 34 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT1S2 20 34 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT3S2 20 34 sblock12396 GTAAACATCCTCGACTGGAAGCT #rat_gr626813_libT2S1 23 34 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT4S1 18 33 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT2S2 20 29 sblock12396 GTAAACATCCTCGACTGGAAGC #rat_gr626812_libT2S1 22 29 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT2S2 19 26 sblock12396 GTAAACATCCTCGACTGGA #rat_gr626809_libT3S1 19 24 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT1S2 18 23 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT3S2 18 23 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT1S2 21 21 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT2S1 18 18 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT3S2 21 18 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT3S1 18 16 sblock12396 GTAAACATCCTCGACTGGAA #rat_gr626810_libT2S1 20 15 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT3S1 21 12 sblock12396 GTAAACATCCTCGACTGG #rat_gr626808_libT2S2 18 11 sblock12396 TGTAAACATCCTCGACTGGAAGCTGT #rat_gr1073626_libT5S1 26 10 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT2S2 21 10 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT4S2 25 8 sblock12396 TGTAAACATCCTCGACTGGAAGCTGT #rat_gr1073626_libT5S2 26 8 sblock12396 GTAAACATCCTCGACTGGAAG #rat_gr626811_libT2S1 21 8 sblock12396 ACATCCTCGACTGGAAGC #rat_gr83832_libT4S1 18 6 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT5S2 25 5 sblock12396 TAAACATCCTCGACTGGAAGC #rat_gr694374_libT2S2 21 5 sblock12396 TGTAAACATCCTCGACTGGAAGCTGT #rat_gr1073626_libT4S2 26 4 sblock12396 TAAACATCCTCGACTGGAAGC #rat_gr694374_libT4S1 21 4 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT4S2 21 4 sblock12396 AACATCCTCGACTGGAAGC #rat_gr28415_libT4S2 19 4 sblock12396 CTGTAAACATCCTCGACTGGAAG #rat_gr453109_libT4S2 23 3 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT5S1 25 3 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT5S2 19 3 sblock12396 TAAACATCCTCGACTGGAAG #rat_gr694373_libT5S1 20 3 sblock12396 AAACATCCTCGACTGGAA #rat_gr12179_libT4S1 18 3 sblock12396 AAACATCCTCGACTGGAAGC #rat_gr12181_libT4S1 20 3 sblock12396 AACTGTAAACATCCTCGACTG #rat_gr39182_libT2S1 21 2 sblock12396 CTGTAAACATCCTCGACTGGA #rat_gr453108_libT5S2 21 2 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT1S2 25 2 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT3S2 25 2 sblock12396 TGTAAACATCCTCGACTGGAAGCTGT #rat_gr1073626_libT4S1 26 2 sblock12396 GTAAACATCCTCGACTGGAAGCTG #rat_gr626814_libT3S2 24 2 sblock12396 GTAAACATCCTCGACTGGAAGCTG #rat_gr626814_libT4S1 24 2 sblock12396 TAAACATCCTCGACTGGA #rat_gr694371_libT2S2 18 2 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT4S1 19 2 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT4S2 19 2 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT5S1 19 2 sblock12396 TAAACATCCTCGACTGGAAG #rat_gr694373_libT5S2 20 2 sblock12396 TAAACATCCTCGACTGGAAGC #rat_gr694374_libT4S2 21 2 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT2S1 22 2 sblock12396 AAACATCCTCGACTGGAA #rat_gr12179_libT5S2 18 2 sblock12396 AAACATCCTCGACTGGAAG #rat_gr12180_libT4S1 19 2 sblock12396 AAACATCCTCGACTGGAAGC #rat_gr12181_libT5S1 20 2 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT1S1 21 2 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT2S2 21 2 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT4S1 21 2 sblock12396 ACATCCTCGACTGGAAGC #rat_gr83832_libT2S2 18 2 sblock12396 ACATCCTCGACTGGAAGC #rat_gr83832_libT5S1 18 2 sblock12396 ACATCCTCGACTGGAAGCT #rat_gr83833_libT2S2 19 2 sblock12396 AACTGTAAACATCCTCGA #rat_gr39179_libT5S1 18 1 sblock12396 AACTGTAAACATCCTCGAC #rat_gr39180_libT2S1 19 1 sblock12396 AACTGTAAACATCCTCGAC #rat_gr39180_libT4S2 19 1 sblock12396 AACTGTAAACATCCTCGACT #rat_gr39181_libT3S2 20 1 sblock12396 AACTGTAAACATCCTCGACTG #rat_gr39182_libT4S1 21 1 sblock12396 AACTGTAAACATCCTCGACTGG #rat_gr39183_libT1S2 22 1 sblock12396 AACTGTAAACATCCTCGACTGG #rat_gr39183_libT5S1 22 1 sblock12396 AACTGTAAACATCCTCGACTGGA #rat_gr39184_libT1S1 23 1 sblock12396 ACTGTAAACATCCTCGAC #rat_gr126370_libT2S2 18 1 sblock12396 CTGTAAACATCCTCGACT #rat_gr453106_libT4S2 18 1 sblock12396 CTGTAAACATCCTCGACTG #rat_gr453107_libT1S1 19 1 sblock12396 CTGTAAACATCCTCGACTG #rat_gr453107_libT4S1 19 1 sblock12396 CTGTAAACATCCTCGACTG #rat_gr453107_libT4S2 19 1 sblock12396 CTGTAAACATCCTCGACTGGAAG #rat_gr453109_libT5S2 23 1 sblock12396 CTGTAAACATCCTCGACTGGAAGC #rat_gr453110_libT5S1 24 1 sblock12396 TGTAAACATCCTCGACTGGAAG #rat_gr1073622_libMirbase_rno-miR-30a 22 1 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT1S1 25 1 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT2S1 25 1 sblock12396 TGTAAACATCCTCGACTGGAAGCTG #rat_gr1073625_libT4S1 25 1 sblock12396 GTAAACATCCTCGACTGGAAGCTG #rat_gr626814_libT1S1 24 1 sblock12396 GTAAACATCCTCGACTGGAAGCTG #rat_gr626814_libT4S2 24 1 sblock12396 GTAAACATCCTCGACTGGAAGCTGT #rat_gr626815_libT5S2 25 1 sblock12396 TAAACATCCTCGACTGGA #rat_gr694371_libT3S2 18 1 sblock12396 TAAACATCCTCGACTGGA #rat_gr694371_libT4S1 18 1 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT1S1 19 1 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT2S1 19 1 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT2S2 19 1 sblock12396 TAAACATCCTCGACTGGAA #rat_gr694372_libT3S1 19 1 sblock12396 TAAACATCCTCGACTGGAAG #rat_gr694373_libT1S1 20 1 sblock12396 TAAACATCCTCGACTGGAAG #rat_gr694373_libT2S2 20 1 sblock12396 TAAACATCCTCGACTGGAAG #rat_gr694373_libT3S2 20 1 sblock12396 TAAACATCCTCGACTGGAAGC #rat_gr694374_libT3S2 21 1 sblock12396 TAAACATCCTCGACTGGAAGC #rat_gr694374_libT5S1 21 1 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT1S2 22 1 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT2S2 22 1 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT4S1 22 1 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT5S1 22 1 sblock12396 TAAACATCCTCGACTGGAAGCT #rat_gr694375_libT5S2 22 1 sblock12396 TAAACATCCTCGACTGGAAGCTG #rat_gr694376_libT1S1 23 1 sblock12396 AAACATCCTCGACTGGAA #rat_gr12179_libT1S1 18 1 sblock12396 AAACATCCTCGACTGGAA #rat_gr12179_libT1S2 18 1 sblock12396 AAACATCCTCGACTGGAA #rat_gr12179_libT3S1 18 1 sblock12396 AAACATCCTCGACTGGAAG #rat_gr12180_libT3S1 19 1 sblock12396 AAACATCCTCGACTGGAAGC #rat_gr12181_libT1S1 20 1 sblock12396 AAACATCCTCGACTGGAAGC #rat_gr12181_libT4S2 20 1 sblock12396 AAACATCCTCGACTGGAAGC #rat_gr12181_libT5S2 20 1 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT1S2 21 1 sblock12396 AAACATCCTCGACTGGAAGCT #rat_gr12182_libT5S1 21 1 sblock12396 AACATCCTCGACTGGAAGC #rat_gr28415_libT1S1 19 1 sblock12396 AACATCCTCGACTGGAAGC #rat_gr28415_libT1S2 19 1 sblock12396 AACATCCTCGACTGGAAGC #rat_gr28415_libT4S1 19 1 sblock12396 AACATCCTCGACTGGAAGCT #rat_gr28416_libT2S2 20 1 sblock12396 AACATCCTCGACTGGAAGCT #rat_gr28416_libT5S2 20 1 sblock12396 ACATCCTCGACTGGAAGCT #rat_gr83833_libT1S1 19 1 sblock12396 ACATCCTCGACTGGAAGCT #rat_gr83833_libT5S1 19 1 sblock12396 CATCCTCGACTGGAAGCT #rat_gr310218_libT5S1 18 1 sblock12396 GTGAAGCCACAAATGGGC #rat_gr643417_libT2S1 18 1 sblock12396 GTGAAGCCACAAATGGGC #rat_gr643417_libT5S2 18 1 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT5S2 22 980 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT5S1 22 938 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT1S1 22 595 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT5S2 21 495 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT5S1 21 478 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT5S1 18 278 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT1S1 21 220 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT1S2 22 209 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT4S2 22 203 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT5S2 18 202 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT2S1 22 199 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT4S2 21 195 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT5S2 19 158 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT5S1 19 144 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT1S1 18 143 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT5S2 20 138 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT4S2 18 136 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT1S2 21 136 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT5S1 20 132 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT3S1 21 122 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT2S1 21 102 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT1S1 19 100 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT3S1 22 100 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT1S1 20 96 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT1S2 18 93 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT4S2 19 93 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT4S2 20 68 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT3S2 21 60 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT1S2 19 55 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT4S1 21 54 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT3S2 22 54 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT1S2 20 51 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT3S1 19 50 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT2S1 18 48 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT5S2 23 47 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT4S1 18 38 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT2S2 18 36 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT3S1 18 33 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT3S1 20 32 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT2S1 20 29 sblock12396 CTTTCAGTCGGATGTTTG #rat_gr470244_libT3S2 18 28 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT2S1 19 27 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT4S1 19 27 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT3S2 19 25 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT3S2 20 22 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT1S1 23 19 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT2S1 23 19 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT5S1 23 19 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT4S1 20 18 sblock12396 CTTTCAGTCGGATGTTTGCAG #rat_gr470247_libT2S2 21 18 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT4S1 22 17 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT4S2 23 15 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT5S1 21 13 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libT2S2 22 12 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT1S2 23 12 sblock12396 CTTTCAGTCGGATGTTTGC #rat_gr470245_libT2S2 19 11 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT5S1 20 11 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT5S2 21 11 sblock12396 CTTTCAGTCGGATGTTTGCA #rat_gr470246_libT2S2 20 9 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT4S1 23 7 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT1S1 21 7 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT3S1 23 6 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT5S2 20 6 sblock12396 TTTCAGTCGGATGTTTGCA #rat_gr1158445_libT5S2 19 5 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT3S1 21 5 sblock12396 TTTCAGTCGGATGTTTGC #rat_gr1158444_libT5S1 18 4 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT2S1 20 4 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT1S2 21 4 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT3S2 21 4 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT4S2 21 4 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT3S2 23 3 sblock12396 TTTCAGTCGGATGTTTGCA #rat_gr1158445_libT5S1 19 3 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT2S1 21 3 sblock12396 TTTCAGTCGGATGTTTGCAGCT #rat_gr1158448_libT5S2 22 3 sblock12396 TTCAGTCGGATGTTTGCAGC #rat_gr1112680_libT5S2 20 3 sblock12396 GCTTTCAGTCGGATGTTT #rat_gr578870_libT3S1 18 2 sblock12396 GCTTTCAGTCGGATGTTTGCA #rat_gr578877_libT1S1 21 2 sblock12396 TTTCAGTCGGATGTTTGC #rat_gr1158444_libT4S2 18 2 sblock12396 TTTCAGTCGGATGTTTGC #rat_gr1158444_libT5S2 18 2 sblock12396 TTTCAGTCGGATGTTTGCA #rat_gr1158445_libT1S1 19 2 sblock12396 TTTCAGTCGGATGTTTGCA #rat_gr1158445_libT3S1 19 2 sblock12396 TTTCAGTCGGATGTTTGCA #rat_gr1158445_libT3S2 19 2 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT1S1 20 2 sblock12396 TTTCAGTCGGATGTTTGCAGC #rat_gr1158447_libT2S2 21 2 sblock12396 TTTCAGTCGGATGTTTGCAGCT #rat_gr1158448_libT4S2 22 2 sblock12396 TTTCAGTCGGATGTTTGCAGCT #rat_gr1158448_libT5S1 22 2 sblock12396 TTCAGTCGGATGTTTGCAGCT #rat_gr1112681_libT5S2 21 2 sblock12396 GCTTTCAGTCGGATGTTT #rat_gr578870_libT1S2 18 1 sblock12396 GCTTTCAGTCGGATGTTT #rat_gr578870_libT2S1 18 1 sblock12396 GCTTTCAGTCGGATGTTT #rat_gr578870_libT4S1 18 1 sblock12396 GCTTTCAGTCGGATGTTTG #rat_gr578876_libT4S1 19 1 sblock12396 GCTTTCAGTCGGATGTTTG #rat_gr578876_libT5S1 19 1 sblock12396 GCTTTCAGTCGGATGTTTGCAG #rat_gr578878_libT4S2 22 1 sblock12396 CTTTCAGTCGGATGTTTGCAGC #rat_gr470248_libMirbase_rno-miR-30a* 22 1 sblock12396 CTTTCAGTCGGATGTTTGCAGCT #rat_gr470249_libT2S2 23 1 sblock12396 CTTTCAGTCGGATGTTTGCAGCTG #rat_gr470250_libT3S1 24 1 sblock12396 TTTCAGTCGGATGTTTGC #rat_gr1158444_libT3S2 18 1 sblock12396 TTTCAGTCGGATGTTTGC #rat_gr1158444_libT4S1 18 1 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT3S1 20 1 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT4S1 20 1 sblock12396 TTTCAGTCGGATGTTTGCAG #rat_gr1158446_libT4S2 20 1 sblock12396 TTTCAGTCGGATGTTTGCAGCT #rat_gr1158448_libT4S1 22 1 sblock12396 TTCAGTCGGATGTTTGCA #rat_gr1112678_libT1S2 18 1 sblock12396 TTCAGTCGGATGTTTGCA #rat_gr1112678_libT4S2 18 1 sblock12396 TTCAGTCGGATGTTTGCAG #rat_gr1112679_libT5S1 19 1 sblock12396 TTCAGTCGGATGTTTGCAGC #rat_gr1112680_libT1S2 20 1 sblock12396 TTCAGTCGGATGTTTGCAGC #rat_gr1112680_libT5S1 20 1 sblock12396 TCAGTCGGATGTTTGCAGC #rat_gr820882_libT1S2 19 1 sblock12396 -------------GCAACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGC-------------- humanZ29p85 CTGTTGACAGTGAGCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAGATGGGCTTTCAGTCGGATGTTTGCAGCTGCCTACTGCCTCGG-- mouseZ35p85 --GTTGACAGTGAGCGACTGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAAATGGGCTTTCAGTCGGATGTTTGCAGCTGCCTACTGCCTCCAAC ** ************************************* ****************************** sblock12396 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053769 ENSRNOG00000035646 rno-mir-30a sblock12396 (((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).))) 1.000 -38.00 # humanZ29p85 (((....(((((.(((.((((((((((((..((((((((((((((....)))).....)))))))))))))))))))))).))).)))))...))) 1.000 -45.10 # mouseZ35p85 ((((.(((((.(((.((((((((((((..((((((((((((((....)))).....)))))))))))))))))))))).))).)))))....)))) 1.000 -45.50 # #sblock12396 chromosome:9:22142889:22142959:1 Same_strand|Exonic_non-coding|ENSRNOT00000053769|ENSRNOG00000035646 ## ENSRNOG00000035646|miRNA|rno-mir-30a|rno-mir-30a [Source:miRBase;Acc:MI0000870] ## {MIR: rno-mir-30a} #humanZ29p85 chromosome:6:72169963:72170058:-1 Same_strand|Boundary_non-coding|ENST00000385092|ENSG00000207827|miRNA|hsa-mir-30a [Source:miRBase;Acc:MI0000088] ## {MIR: hsa-mir-30a} #mouseZ35p85 chromosome:1:23279097:23279192:1 Same_strand|Boundary_non-coding|ENSMUST00000083471|ENSMUSG00000065405|miRNA|mmu-mir-30a [Source:miRBase;Acc:MI0000144] ## {MIR: mmu-mir-30a} ========== sblock12397 (miRBase rno-mir-30c-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12397: 0.001 randfold humanZ31p85_sblock12397: 0.001 randfold mouseZ36p85_sblock12397: 0.001 #forester humanZ31p85_sblock12397: 0.976798 forester mouseZ36p85_sblock12397: 1 #identity: 98.89 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT1S1 22 4 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT2S2 22 4 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT5S1 22 4 sblock12397 TAGAGAGCACTGAGTGACAGATAC #rat_gr761931_libT5S1 24 2 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT1S2 22 2 sblock12397 GTAGAGAGCACTGAGTGACAGATAC #rat_gr629562_libT1S1 25 1 sblock12397 TAGAGAGCACTGAGTGAC #rat_gr761929_libT2S2 18 1 sblock12397 TAGAGAGCACTGAGTGACA #rat_gr761930_libT2S2 19 1 sblock12397 TAGAGAGCACTGAGTGACAGATAC #rat_gr761931_libT2S2 24 1 sblock12397 TAGAGAGCACTGAGTGACAGATAC #rat_gr761931_libT3S2 24 1 sblock12397 AGAGAGCACTGAGTGACAG #rat_gr141971_libT5S1 19 1 sblock12397 AGAGAGCACTGAGTGACAGATAC #rat_gr141972_libT5S1 23 1 sblock12397 GAGAGCACTGAGTGACAG #rat_gr505292_libT5S2 18 1 sblock12397 GAGAGCACTGAGTGACAGA #rat_gr505293_libT3S1 19 1 sblock12397 GAGAGCACTGAGTGACAGA #rat_gr505293_libT4S1 19 1 sblock12397 GAGAGCACTGAGTGACAGA #rat_gr505293_libT4S2 19 1 sblock12397 GAGAGCACTGAGTGACAGATA #rat_gr505294_libT4S2 21 1 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT2S1 22 1 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT3S1 22 1 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT3S2 22 1 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT4S2 22 1 sblock12397 GAGAGCACTGAGTGACAGATAC #rat_gr505295_libT5S2 22 1 sblock12397 AGAGCACTGAGTGACAGAT #rat_gr142762_libT5S2 19 1 sblock12397 AGAGCACTGAGTGACAGATAC #rat_gr142763_libT1S1 21 1 sblock12397 AGAGCACTGAGTGACAGATAC #rat_gr142763_libT4S2 21 1 sblock12397 AGAGCACTGAGTGACAGATAC #rat_gr142763_libT5S2 21 1 sblock12397 GAGCACTGAGTGACAGATAC #rat_gr507300_libT2S1 20 1 sblock12397 GAGCACTGAGTGACAGATAC #rat_gr507300_libT2S2 20 1 sblock12397 GAGCACTGAGTGACAGATAC #rat_gr507300_libT4S1 20 1 sblock12397 GAGCACTGAGTGACAGATAC #rat_gr507300_libT5S1 20 1 sblock12397 GAGCACTGAGTGACAGATAC #rat_gr507300_libT5S2 20 1 sblock12397 AGCACTGAGTGACAGATAC #rat_gr151321_libT2S1 19 1 sblock12397 GCACTGAGTGACAGATAC #rat_gr531235_libT1S1 18 1 sblock12397 GCACTGAGTGACAGATAC #rat_gr531235_libT3S2 18 1 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT5S2 24 20361 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT5S2 23 19296 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT4S2 24 14940 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT5S1 24 14839 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT1S1 24 14814 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT5S2 18 13770 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT5S1 23 12977 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT5S2 21 12381 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT4S2 23 11951 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT5S2 22 11737 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT4S1 24 10342 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT4S1 23 9512 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT1S2 24 9320 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT5S2 19 8973 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT4S2 22 8659 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT4S2 18 8468 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT5S2 20 8461 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT4S2 21 8389 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT5S1 22 7987 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT5S1 21 7768 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT1S1 18 7644 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT1S1 23 7600 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT1S1 21 7562 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT5S1 18 7466 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT3S1 24 7421 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT1S1 22 7120 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT3S2 24 6808 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT3S1 23 6708 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT4S1 22 6588 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT4S2 19 6544 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT4S1 21 6270 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT4S1 18 5941 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT4S2 20 5665 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT5S1 19 5567 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT3S2 23 5379 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT1S1 20 5275 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT3S1 18 5204 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT1S1 19 5180 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT5S1 20 5173 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT3S1 22 5162 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT3S1 21 4957 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT1S2 23 4736 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT4S1 19 4708 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT3S2 18 4612 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT1S2 21 4554 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT1S2 18 4497 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT1S2 22 4463 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT2S2 24 4305 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT3S2 21 4136 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT2S2 22 4071 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT4S1 20 3994 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT3S2 22 3929 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT3S1 19 3617 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT1S2 19 3580 sblock12397 TGTAAACATCCTACACTCTCAGCT #rat_gr1073485_libT2S1 24 3551 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT3S1 20 3262 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT3S2 19 3206 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT2S2 18 3184 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT2S2 23 3015 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT1S2 20 2985 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT2S2 21 2719 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT3S2 20 2700 sblock12397 TGTAAACATCCTACACTCTCAG #rat_gr1073483_libT2S1 22 2689 sblock12397 TGTAAACATCCTACACTC #rat_gr1073472_libT2S1 18 2338 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libT2S1 23 2262 sblock12397 TGTAAACATCCTACACTCTCA #rat_gr1073482_libT2S1 21 1754 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT2S2 19 1686 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT2S2 20 1360 sblock12397 TGTAAACATCCTACACTCT #rat_gr1073480_libT2S1 19 1175 sblock12397 TGTAAACATCCTACACTCTC #rat_gr1073481_libT2S1 20 1031 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT5S2 22 433 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT5S2 23 402 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT5S1 23 308 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT1S1 23 289 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT4S2 23 280 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT5S1 22 273 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT4S2 22 231 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT5S2 20 225 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT4S1 23 224 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT5S2 21 195 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT1S2 23 182 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT4S1 22 171 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT5S2 18 169 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT3S2 23 169 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT5S2 19 167 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT5S1 20 167 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT3S1 23 164 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT4S2 20 133 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT1S1 20 132 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT3S1 22 132 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT3S2 22 128 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT1S1 21 127 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT1S1 22 124 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT4S1 21 119 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT4S2 21 119 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT4S1 20 118 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT5S1 21 115 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT5S1 18 113 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT4S2 18 112 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT2S2 23 110 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT5S1 19 106 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT4S2 19 93 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT1S1 19 92 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT3S1 20 91 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT3S1 21 90 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT1S1 18 88 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT1S2 20 88 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT1S2 22 88 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT4S1 19 82 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT3S2 20 82 sblock12397 GTAAACATCCTACACTCTCAGCT #rat_gr626793_libT2S1 23 82 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT3S2 18 79 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT3S1 18 75 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT3S1 19 75 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT3S2 21 74 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT2S2 22 73 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT4S1 18 72 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT1S2 18 69 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT2S2 20 67 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT1S2 19 66 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT2S1 21 64 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT2S2 21 58 sblock12397 GTAAACATCCTACACTCTCAG #rat_gr626791_libT1S2 21 57 sblock12397 GTAAACATCCTACACTCTCA #rat_gr626790_libT2S1 20 47 sblock12397 GTAAACATCCTACACTCTCAGC #rat_gr626792_libT2S1 22 43 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT3S2 19 35 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT2S2 19 34 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT2S2 18 30 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT5S2 26 26 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT5S1 26 22 sblock12397 GTAAACATCCTACACTCT #rat_gr626788_libT2S1 18 21 sblock12397 GTAAACATCCTACACTCTC #rat_gr626789_libT2S1 19 21 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT4S2 26 14 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT4S1 26 10 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT2S2 19 9 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT1S2 26 8 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT4S2 20 7 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT4S2 19 7 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT5S2 19 5 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT5S2 19 5 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT4S2 19 5 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT1S1 25 4 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT1S2 25 4 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT4S2 25 4 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT5S1 25 4 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT1S1 26 4 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT3S2 26 4 sblock12397 TAAACATCCTACACTCTCAGCT #rat_gr694370_libT4S2 22 4 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT1S2 18 4 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT1S1 21 4 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT1S2 21 4 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT4S1 21 4 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT5S1 21 4 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT4S1 19 4 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT4S2 20 4 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT4S2 18 4 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT5S1 19 4 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT5S2 25 3 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT5S1 19 3 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT3S2 18 3 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT4S1 18 3 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT1S1 19 3 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT5S2 20 3 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT1S1 19 3 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT1S1 20 3 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT3S1 18 3 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT1S1 19 3 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT3S1 19 3 sblock12397 CATCCTACACTCTCAGCT #rat_gr310108_libT5S2 18 3 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT3S2 19 2 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT4S2 19 2 sblock12397 CTGTAAACATCCTACACTCT #rat_gr453101_libT1S1 20 2 sblock12397 CTGTAAACATCCTACACTCTCA #rat_gr453103_libT4S2 22 2 sblock12397 CTGTAAACATCCTACACTCTCA #rat_gr453103_libT5S2 22 2 sblock12397 CTGTAAACATCCTACACTCTCAG #rat_gr453104_libT4S2 23 2 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT4S1 25 2 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT3S1 26 2 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT3S1 19 2 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT3S2 19 2 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT4S1 19 2 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT4S2 19 2 sblock12397 TAAACATCCTACACTCTCAGC #rat_gr694369_libT1S2 21 2 sblock12397 TAAACATCCTACACTCTCAGC #rat_gr694369_libT4S2 21 2 sblock12397 TAAACATCCTACACTCTCAGC #rat_gr694369_libT5S1 21 2 sblock12397 TAAACATCCTACACTCTCAGCT #rat_gr694370_libT3S2 22 2 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT2S2 18 2 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT4S2 18 2 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT5S2 18 2 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT3S2 19 2 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT4S2 19 2 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT1S2 20 2 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT2S2 20 2 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT3S1 20 2 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT4S1 20 2 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT2S2 21 2 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT3S1 21 2 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT5S2 19 2 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT4S1 20 2 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT5S1 20 2 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT1S1 18 2 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT4S1 18 2 sblock12397 CATCCTACACTCTCAGCT #rat_gr310108_libT1S1 18 2 sblock12397 CATCCTACACTCTCAGCT #rat_gr310108_libT4S2 18 2 sblock12397 CATCCTACACTCTCAGCT #rat_gr310108_libT5S1 18 2 sblock12397 CATCCTACACTCTCAGCTG #rat_gr310109_libT5S2 19 2 sblock12397 CTGTAAACATCCTACACT #rat_gr453099_libT3S1 18 1 sblock12397 CTGTAAACATCCTACACT #rat_gr453099_libT5S2 18 1 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT1S1 19 1 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT2S2 19 1 sblock12397 CTGTAAACATCCTACACTC #rat_gr453100_libT4S1 19 1 sblock12397 CTGTAAACATCCTACACTCT #rat_gr453101_libT1S2 20 1 sblock12397 CTGTAAACATCCTACACTCT #rat_gr453101_libT4S1 20 1 sblock12397 CTGTAAACATCCTACACTCTC #rat_gr453102_libT1S1 21 1 sblock12397 CTGTAAACATCCTACACTCTCAG #rat_gr453104_libT4S1 23 1 sblock12397 CTGTAAACATCCTACACTCTCAG #rat_gr453104_libT5S1 23 1 sblock12397 CTGTAAACATCCTACACTCTCAGCT #rat_gr453105_libT2S2 25 1 sblock12397 CTGTAAACATCCTACACTCTCAGCT #rat_gr453105_libT3S2 25 1 sblock12397 TGTAAACATCCTACACTCTCAGC #rat_gr1073484_libMirbase_rno-miR-30c 23 1 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT2S1 25 1 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT2S2 25 1 sblock12397 TGTAAACATCCTACACTCTCAGCTG #rat_gr1073486_libT3S2 25 1 sblock12397 TGTAAACATCCTACACTCTCAGCTGT #rat_gr1073487_libT2S2 26 1 sblock12397 GTAAACATCCTACACTCTCAGCTG #rat_gr626794_libT4S2 24 1 sblock12397 GTAAACATCCTACACTCTCAGCTGT #rat_gr626795_libT3S1 25 1 sblock12397 GTAAACATCCTACACTCTCAGCTGT #rat_gr626795_libT5S2 25 1 sblock12397 TAAACATCCTACACTCTC #rat_gr694366_libT4S1 18 1 sblock12397 TAAACATCCTACACTCTC #rat_gr694366_libT4S2 18 1 sblock12397 TAAACATCCTACACTCTC #rat_gr694366_libT5S1 18 1 sblock12397 TAAACATCCTACACTCTC #rat_gr694366_libT5S2 18 1 sblock12397 TAAACATCCTACACTCTCA #rat_gr694367_libT1S2 19 1 sblock12397 TAAACATCCTACACTCTCAG #rat_gr694368_libT1S1 20 1 sblock12397 TAAACATCCTACACTCTCAGC #rat_gr694369_libT2S2 21 1 sblock12397 TAAACATCCTACACTCTCAGCT #rat_gr694370_libT1S1 22 1 sblock12397 TAAACATCCTACACTCTCAGCT #rat_gr694370_libT5S2 22 1 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT1S1 18 1 sblock12397 AAACATCCTACACTCTCA #rat_gr12169_libT5S1 18 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT1S2 19 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT2S1 19 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT2S2 19 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT3S1 19 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT5S1 19 1 sblock12397 AAACATCCTACACTCTCAG #rat_gr12170_libT5S2 19 1 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT3S2 20 1 sblock12397 AAACATCCTACACTCTCAGC #rat_gr12171_libT5S1 20 1 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT2S1 21 1 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT4S2 21 1 sblock12397 AAACATCCTACACTCTCAGCT #rat_gr12172_libT5S2 21 1 sblock12397 AAACATCCTACACTCTCAGCTG #rat_gr12173_libT3S2 22 1 sblock12397 AACATCCTACACTCTCAG #rat_gr28406_libT1S2 18 1 sblock12397 AACATCCTACACTCTCAG #rat_gr28406_libT4S1 18 1 sblock12397 AACATCCTACACTCTCAG #rat_gr28406_libT5S2 18 1 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT1S2 19 1 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT3S2 19 1 sblock12397 AACATCCTACACTCTCAGC #rat_gr28407_libT5S1 19 1 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT1S2 20 1 sblock12397 AACATCCTACACTCTCAGCT #rat_gr28408_libT5S2 20 1 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT1S2 18 1 sblock12397 ACATCCTACACTCTCAGC #rat_gr83812_libT5S1 18 1 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT1S2 19 1 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT3S2 19 1 sblock12397 ACATCCTACACTCTCAGCT #rat_gr83813_libT4S1 19 1 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT5S2 23 74 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT5S2 19 29 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT1S1 23 21 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT5S2 21 16 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT5S1 23 16 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT5S2 22 15 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT2S2 23 12 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT4S2 23 12 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT1S1 19 11 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT4S1 23 11 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT2S1 21 10 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT1S2 19 8 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT3S1 19 8 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT1S1 21 8 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT1S2 23 8 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT3S2 23 8 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT5S1 19 7 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT2S2 21 7 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT5S1 21 7 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT5S1 22 7 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT4S2 19 6 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT4S2 21 6 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT2S1 23 6 sblock12397 TGGGAGAAGGCTGTTTACTCTC #rat_gr1030437_libT5S2 22 6 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT3S2 19 5 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT5S2 20 5 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT2S1 22 5 sblock12397 TGGGAGAAGGCTGTTTACTCTC #rat_gr1030437_libT4S2 22 5 sblock12397 CTGGGAGAAGGCTGTTTA #rat_gr450242_libT4S2 18 4 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT5S1 20 4 sblock12397 TGGGAGAAGGCTGTTTACTC #rat_gr1030436_libT4S2 20 4 sblock12397 TGGGAGAAGGCTGTTTACTCTC #rat_gr1030437_libT4S1 22 4 sblock12397 CTGGGAGAAGGCTGTTTA #rat_gr450242_libT1S2 18 3 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT2S1 19 3 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT2S2 19 3 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT2S1 20 3 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT3S1 21 3 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT3S1 22 3 sblock12397 CTGGGAGAAGGCTGTTTACTCTC #rat_gr450247_libT3S1 23 3 sblock12397 CTGGGAGAAGGCTGTTTA #rat_gr450242_libT5S2 18 2 sblock12397 CTGGGAGAAGGCTGTTTAC #rat_gr450243_libT4S1 19 2 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT1S1 20 2 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT4S1 20 2 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT1S2 21 2 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT3S2 21 2 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT1S1 22 2 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT4S2 22 2 sblock12397 TGGGAGAAGGCTGTTTAC #rat_gr1030434_libT5S2 18 2 sblock12397 TGGGAGAAGGCTGTTTACTC #rat_gr1030436_libT5S2 20 2 sblock12397 TGGGAGAAGGCTGTTTACTCTC #rat_gr1030437_libT2S1 22 2 sblock12397 AAGCTGGGAGAAGGCTGTTTACTCTC #rat_gr48650_libT5S2 26 1 sblock12397 CTGGGAGAAGGCTGTTTA #rat_gr450242_libT1S1 18 1 sblock12397 CTGGGAGAAGGCTGTTTA #rat_gr450242_libT4S1 18 1 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT2S2 20 1 sblock12397 CTGGGAGAAGGCTGTTTACT #rat_gr450244_libT4S2 20 1 sblock12397 CTGGGAGAAGGCTGTTTACTC #rat_gr450245_libT4S1 21 1 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libMirbase_rno-miR-30c-2* 22 1 sblock12397 CTGGGAGAAGGCTGTTTACTCT #rat_gr450246_libT2S2 22 1 sblock12397 TGGGAGAAGGCTGTTTAC #rat_gr1030434_libT3S2 18 1 sblock12397 TGGGAGAAGGCTGTTTACT #rat_gr1030435_libT4S1 19 1 sblock12397 TGGGAGAAGGCTGTTTACTC #rat_gr1030436_libT1S2 20 1 sblock12397 TGGGAGAAGGCTGTTTACTCTC #rat_gr1030437_libT3S2 22 1 sblock12397 GTAGAGAGCACTGAGTGACAGATACTGTAAACATCCTACACTCTCAGCTGTGAAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCTCTCTGCCTT humanZ31p85 -------------------------TGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACT----------- mouseZ36p85 -------------------------TGTAAACATCCTACACTCTCAGCTGTGAAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACT----------- *************************** ******************************** sblock12397 .................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053685 ENSRNOG00000035562 rno-mir-30c-2 sblock12397 ............(((.(.((((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))))))) 1.000 -29.34 # humanZ31p85 .(((((((.(((...(((((((((..............))))))))).))).))))))). 1.000 -24.04 # mouseZ36p85 .(((((((.(((...(((((((((..............))))))))).))).))))))). 1.000 -24.04 # #sblock12397 chromosome:9:22162618:22162713:1 Same_strand|Boundary_non-coding|ENSRNOT00000053685|ENSRNOG00000035562 ## Same_strand|Exonic_non-coding|ENSRNOT00000053685|ENSRNOG00000035562 ## ENSRNOG00000035562|miRNA|rno-mir-30c-2|rno-mir-30c-2 [Source:miRBase;Acc:MI0000871] ## {MIR: rno-mir-30c-2} #humanZ31p85 chromosome:6:72143359:72143494:-1 Same_strand|Intronic_coding|ENST00000370429|ENSG00000203917|protein_coding|Uncharacterized protein ENSP00000359458 [Source:UniProtKB/TrEMBL;Acc:A6NJX2] ## Same_strand|Boundary_non-coding|ENST00000362224|ENSG00000199094|miRNA|hsa-mir-30c-2 [Source:miRBase;Acc:MI0000254] ## {MIR: hsa-mir-30c-2} #mouseZ36p85 chromosome:1:23298508:23298643:1 Same_strand|Boundary_non-coding|ENSMUST00000083633|ENSMUSG00000065567|miRNA|mmu-mir-30c-2 [Source:miRBase;Acc:MI0000548] ## {MIR: mmu-mir-30c-2} ========== sblock12475 (miRBase rno-mir-26b) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12475: 0.003 randfold humanZ38p85_sblock12475: 0.001 randfold mouseZ52p85_sblock12475: 0.001 #forester humanZ38p85_sblock12475: 0.865459 forester mouseZ52p85_sblock12475: 0.974098 #identity: 96.15 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT5S2 22 3635 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT5S1 21 2468 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT3S1 21 2443 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT5S2 21 2423 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT5S1 22 2414 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT3S1 22 2046 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT4S2 21 2035 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT2S2 22 1999 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT3S2 22 1928 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT2S2 21 1893 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT2S1 21 1658 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT4S2 22 1658 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT5S2 20 1637 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT2S1 22 1613 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT5S2 19 1605 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT3S1 19 1545 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT1S1 21 1517 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT4S1 21 1490 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT3S2 21 1460 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT3S1 20 1367 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT4S2 19 1337 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT4S2 20 1318 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT5S1 20 1171 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT5S1 19 1168 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT4S1 22 1165 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT3S2 19 1139 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT3S2 20 1125 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT1S1 22 1091 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT2S2 19 1057 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT2S2 20 957 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT4S1 19 856 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT2S1 20 853 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT2S1 19 821 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libT1S2 21 797 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT1S1 20 791 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT1S1 19 763 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT4S1 20 708 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT5S2 18 611 sblock12475 TTCAAGTAATTCAGGATAGGTT #rat_gr1108566_libT1S2 22 602 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT3S1 18 598 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT4S2 18 506 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT5S1 18 489 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT3S2 18 474 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT2S2 18 441 sblock12475 TTCAAGTAATTCAGGATAGG #rat_gr1108564_libT1S2 20 412 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT4S1 18 391 sblock12475 TTCAAGTAATTCAGGATAG #rat_gr1108563_libT1S2 19 343 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT1S1 18 342 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT2S1 18 341 sblock12475 TTCAAGTAATTCAGGATA #rat_gr1108562_libT1S2 18 151 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT5S2 20 119 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT5S2 23 109 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT5S1 23 92 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT3S1 23 90 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT5S1 20 82 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT3S1 20 79 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT3S2 23 69 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT4S2 20 63 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT2S2 23 61 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT4S2 23 60 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT2S2 20 60 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT3S2 20 60 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT1S1 20 58 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT2S1 23 51 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT4S1 20 51 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT5S2 21 49 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT3S1 19 48 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT2S1 20 48 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT5S2 19 45 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT1S1 23 34 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT4S2 19 33 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT5S1 19 33 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT2S1 19 30 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT2S1 21 30 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT4S2 18 29 sblock12475 TCAAGTAATTCAGGATAGGT #rat_gr808466_libT1S2 20 29 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT2S2 21 29 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT2S2 19 28 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT3S1 18 26 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT4S1 19 26 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT1S2 23 25 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT3S2 19 25 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT5S1 21 23 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT3S1 21 19 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT3S2 18 18 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT5S2 18 18 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT1S1 19 18 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT3S2 21 18 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT2S2 18 16 sblock12475 TCAAGTAATTCAGGATAGG #rat_gr808465_libT1S2 19 13 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT2S1 18 12 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT5S1 18 12 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT3S2 24 11 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT2S2 24 10 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT1S1 21 10 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT4S1 21 10 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT4S2 21 10 sblock12475 TTCAAGTAATTCAGGATAGGTTG #rat_gr1108567_libT4S1 23 9 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT4S1 18 9 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT3S1 24 8 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT4S2 24 6 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT5S1 24 6 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT1S1 18 6 sblock12475 TCAAGTAATTCAGGATAGGTT #rat_gr808467_libT1S2 21 6 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT2S1 24 5 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT5S2 24 4 sblock12475 TCAAGTAATTCAGGATAG #rat_gr808464_libT1S2 18 4 sblock12475 TCAAGTAATTCAGGATAGGTTG #rat_gr808468_libT3S1 22 3 sblock12475 CAAGTAATTCAGGATAGGT #rat_gr271843_libT2S2 19 3 sblock12475 GTTCAAGTAATTCAGGATA #rat_gr657220_libT2S2 19 2 sblock12475 TTCAAGTAATTCAGGATAGGTTGT #rat_gr1108568_libT1S1 24 2 sblock12475 TCAAGTAATTCAGGATAGGTTG #rat_gr808468_libT1S2 22 2 sblock12475 TCAAGTAATTCAGGATAGGTTG #rat_gr808468_libT4S2 22 2 sblock12475 TCAAGTAATTCAGGATAGGTTG #rat_gr808468_libT5S1 22 2 sblock12475 TCAAGTAATTCAGGATAGGTTGT #rat_gr808469_libT2S1 23 2 sblock12475 CAAGTAATTCAGGATAGG #rat_gr271842_libT4S2 18 2 sblock12475 AAGTAATTCAGGATAGGT #rat_gr54840_libT2S2 18 2 sblock12475 AGTTCAAGTAATTCAGGATAGGT #rat_gr202688_libT3S1 23 1 sblock12475 GTTCAAGTAATTCAGGATAGGT #rat_gr657221_libT5S2 22 1 sblock12475 TTCAAGTAATTCAGGATAGGT #rat_gr1108565_libMirbase_rno-miR-26b 21 1 sblock12475 TTCAAGTAATTCAGGATAGGTTGTG #rat_gr1108569_libT4S2 25 1 sblock12475 TTCAAGTAATTCAGGATAGGTTGTG #rat_gr1108569_libT5S1 25 1 sblock12475 TTCAAGTAATTCAGGATAGGTTGTGG #rat_gr1108570_libT4S1 26 1 sblock12475 TCAAGTAATTCAGGATAGGTTG #rat_gr808468_libT3S2 22 1 sblock12475 TCAAGTAATTCAGGATAGGTTGT #rat_gr808469_libT2S2 23 1 sblock12475 TCAAGTAATTCAGGATAGGTTGT #rat_gr808469_libT4S2 23 1 sblock12475 TCAAGTAATTCAGGATAGGTTGTG #rat_gr808470_libT1S1 24 1 sblock12475 CAAGTAATTCAGGATAGG #rat_gr271842_libT2S1 18 1 sblock12475 CAAGTAATTCAGGATAGG #rat_gr271842_libT2S2 18 1 sblock12475 CAAGTAATTCAGGATAGG #rat_gr271842_libT3S1 18 1 sblock12475 CAAGTAATTCAGGATAGGT #rat_gr271843_libT1S1 19 1 sblock12475 CAAGTAATTCAGGATAGGT #rat_gr271843_libT1S2 19 1 sblock12475 CAAGTAATTCAGGATAGGT #rat_gr271843_libT4S2 19 1 sblock12475 CAAGTAATTCAGGATAGGT #rat_gr271843_libT5S2 19 1 sblock12475 CAAGTAATTCAGGATAGGTT #rat_gr271844_libT1S1 20 1 sblock12475 AAGTAATTCAGGATAGGT #rat_gr54840_libT2S1 18 1 sblock12475 AAGTAATTCAGGATAGGTT #rat_gr54841_libT1S2 19 1 sblock12475 AAGTAATTCAGGATAGGTT #rat_gr54841_libT2S1 19 1 sblock12475 AAGTAATTCAGGATAGGTT #rat_gr54841_libT2S2 19 1 sblock12475 AAGTAATTCAGGATAGGTT #rat_gr54841_libT5S1 19 1 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT3S1 18 61 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT2S1 18 60 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT2S2 18 59 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT2S1 22 59 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT2S2 22 40 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT1S1 18 37 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT3S1 22 36 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT3S2 18 30 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT5S2 18 21 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT5S2 22 21 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT5S1 18 20 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT4S2 18 19 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT4S1 18 16 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT2S1 19 16 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT3S1 19 16 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT2S1 20 16 sblock12475 CCTGTTCTCCATTACTTG #rat_gr382169_libT1S2 18 14 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT4S2 22 14 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT1S1 22 13 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT3S1 20 12 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT5S1 22 12 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT1S2 22 11 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT3S2 20 10 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT5S1 19 9 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT5S2 19 9 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT2S2 20 9 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT4S1 20 9 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT4S1 22 9 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT5S1 20 8 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libT3S2 22 8 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT1S1 20 7 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT2S1 21 7 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT3S1 21 7 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT1S2 19 6 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT4S2 20 5 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT2S2 21 5 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT1S1 19 4 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT4S1 19 4 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT5S2 20 4 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT2S2 19 3 sblock12475 CCTGTTCTCCATTACTTGGC #rat_gr382171_libT1S2 20 3 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT5S2 21 3 sblock12475 AGCCTGTTCTCCATTACT #rat_gr160827_libT1S2 18 2 sblock12475 GCCTGTTCTCCATTACTTG #rat_gr559420_libT5S2 19 2 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT1S1 21 2 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT1S2 21 2 sblock12475 GCCTGTTCTCCATTACTT #rat_gr559419_libT2S1 18 1 sblock12475 GCCTGTTCTCCATTACTTGGC #rat_gr559421_libT3S1 21 1 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT3S2 19 1 sblock12475 CCTGTTCTCCATTACTTGG #rat_gr382170_libT4S2 19 1 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT4S2 21 1 sblock12475 CCTGTTCTCCATTACTTGGCT #rat_gr382172_libT5S1 21 1 sblock12475 CCTGTTCTCCATTACTTGGCTC #rat_gr382173_libMirbase_rno-miR-26b* 22 1 sblock12475 CCTGTTCTCCATTACTTGGCTCG #rat_gr382174_libT2S1 23 1 sblock12475 CTGTTCTCCATTACTTGGCTC #rat_gr457026_libT4S2 21 1 sblock12475 --------------TGCCCGGGACCCAGTTCAAGTAATTCAGGATAGGTTGTGGTGCTGGCCAGCCTGTTCTCCATTACTTGGCTCGGGGGCCGGTGCC-------------------- humanZ38p85 CCCTCGCCCCACCCTGCCCGGGACCCAGTTCAAGTAATTCAGGATAGGTTGT-GTGCTGTCCAGCCTGTTCTCCATTACTTGGCTCGGGGACCGGTGCCCTGCAGCCTTGGGGTGAGGG mouseZ52p85 CTCTTACCCC-TACTGCCCGGGACCCAGTTCAAGTAATTCAGGATAGGTTGTGGTGCTGACCAGCCTGTTCTCCATTACTTGGCTCGGGGGCCGGTGCCCTGCAGCCTTGGGGTGAGAG ************************************** ****** ****************************** ******** sblock12475 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000020646 ENSRNOG00000015295 Ctdsp1 sblock12475 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053731 ENSRNOG00000035608 rno-mir-26b sblock12475 .((((((..((((((.((((((((..(((((((((..((((....)))))))))))))..))))))))))).)))..)))).)). 1.000 -42.60 # humanZ38p85 (((((((((((..((((((((..(((((.(((((((((..(((((((((((. ........)))))))))))..))))))))))).)))..))))......))))...))))))))))) 0.994 -66.30 # mouseZ52p85 (((((((((( ..((((((((..(((((.(((((((((..(((((((((..((((....)))))))))))))..))))))))))).)))..))))......))))....)))))))))) 0.990 -60.90 # #sblock12475 chromosome:9:73734062:73734146:1 Same_strand|Exonic_non-coding|ENSRNOT00000053731|ENSRNOG00000035608 ## Same_strand|Intronic_coding|ENSRNOT00000020646|ENSRNOG00000015295 ## Same_strand|Boundary_non-coding|ENSRNOT00000053731|ENSRNOG00000035608 ## ENSRNOG00000015295|protein_coding|Ctdsp1|Ctdsp1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q3B8P1] ## ENSRNOG00000035608|miRNA|rno-mir-26b|rno-mir-26b [Source:miRBase;Acc:MI0000858] ## {MIR: rno-mir-26b} #humanZ38p85 chromosome:2:218975596:218975713:1 Same_strand|Intronic_coding|ENST00000273062|ENSG00000144579|protein_coding|Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (EC 3.1.3.16)(Nuclear LIM interactor-interacting factor 3)(NLI-interacting factor 3)(NLI-IF) [Source:UniProtKB/Swiss-Prot;Acc:Q9GZU7] ## Same_strand|Boundary_non-coding|ENST00000362251|ENSG00000199121|miRNA|hsa-mir-26b [Source:miRBase;Acc:MI0000084] ## {MIR: hsa-mir-26b} #mouseZ52p85 chromosome:1:74440871:74440988:1 Same_strand|Intronic_coding|ENSMUST00000027367|ENSMUSG00000026176|protein_coding|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 Gene [Source:MGI Symbol;Acc:MGI:2654470] ## Same_strand|Boundary_non-coding|ENSMUST00000083534|ENSMUSG00000065468|miRNA|mmu-mir-26b [Source:miRBase;Acc:MI0000575] ## {MIR: mmu-mir-26b} ========== sblock12691 (miRBase rno-mir-384) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12691: 0.001 randfold human61p86_sblock12691: 0.008 randfold mouseZ34p86_sblock12691: 0.001 #forester human61p86_sblock12691: 0.414242 forester mouseZ34p86_sblock12691: 1 #identity: 85.34 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT1S1 19 1229 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT1S2 19 884 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT1S1 22 517 sblock12691 ATTCCTAGAAATTGTTCACA #rat_gr242201_libT1S1 20 512 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT1S2 22 510 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT1S1 21 358 sblock12691 ATTCCTAGAAATTGTTCACA #rat_gr242201_libT1S2 20 308 sblock12691 TCATTCCTAGAAATTGTTCAC #rat_gr825022_libT1S1 21 308 sblock12691 TCATTCCTAGAAATTGTTCAC #rat_gr825022_libT1S2 21 265 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT1S2 21 249 sblock12691 ATTCCTAGAAATTGTTCA #rat_gr242199_libT1S1 18 235 sblock12691 ATTCCTAGAAATTGTTCA #rat_gr242199_libT1S2 18 169 sblock12691 TCATTCCTAGAAATTGTTCACA #rat_gr825023_libT1S1 22 99 sblock12691 TCATTCCTAGAAATTGTTCA #rat_gr825021_libT1S1 20 72 sblock12691 TCATTCCTAGAAATTGTTC #rat_gr825020_libT1S1 19 70 sblock12691 TCATTCCTAGAAATTGTTCACA #rat_gr825023_libT1S2 22 69 sblock12691 TTCCTAGAAATTGTTCACA #rat_gr1121037_libT1S1 19 66 sblock12691 TCATTCCTAGAAATTGTTC #rat_gr825020_libT1S2 19 57 sblock12691 TCATTCCTAGAAATTGTTCA #rat_gr825021_libT1S2 20 50 sblock12691 TCATTCCTAGAAATTGTTCACAA #rat_gr825024_libT1S2 23 48 sblock12691 TCATTCCTAGAAATTGTTCACAA #rat_gr825024_libT1S1 23 47 sblock12691 CATTCCTAGAAATTGTTCAC #rat_gr315973_libT1S1 20 43 sblock12691 CATTCCTAGAAATTGTTCAC #rat_gr315973_libT1S2 20 40 sblock12691 TTCCTAGAAATTGTTCACA #rat_gr1121037_libT1S2 19 33 sblock12691 TCATTCCTAGAAATTGTT #rat_gr825019_libT1S1 18 33 sblock12691 TTCCTAGAAATTGTTCACAA #rat_gr1121038_libT1S1 20 32 sblock12691 TTCCTAGAAATTGTTCAC #rat_gr1121036_libT1S1 18 31 sblock12691 TTCCTAGAAATTGTTCACAAT #rat_gr1121039_libT1S1 21 28 sblock12691 TTCCTAGAAATTGTTCACAAT #rat_gr1121039_libT1S2 21 26 sblock12691 TTCCTAGAAATTGTTCAC #rat_gr1121036_libT1S2 18 26 sblock12691 TCATTCCTAGAAATTGTT #rat_gr825019_libT1S2 18 25 sblock12691 CATTCCTAGAAATTGTTCACA #rat_gr315974_libT1S2 21 19 sblock12691 CATTCCTAGAAATTGTTCACA #rat_gr315974_libT1S1 21 15 sblock12691 TTCCTAGAAATTGTTCACAA #rat_gr1121038_libT1S2 20 13 sblock12691 CATTCCTAGAAATTGTTCACAA #rat_gr315975_libT1S2 22 10 sblock12691 CATTCCTAGAAATTGTTCA #rat_gr315972_libT1S1 19 10 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT5S1 19 9 sblock12691 CATTCCTAGAAATTGTTC #rat_gr315971_libT1S2 18 7 sblock12691 TCCTAGAAATTGTTCACAAT #rat_gr870007_libT1S2 20 6 sblock12691 CATTCCTAGAAATTGTTC #rat_gr315971_libT1S1 18 6 sblock12691 CATTCCTAGAAATTGTTCACAA #rat_gr315975_libT1S1 22 5 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT5S2 19 5 sblock12691 CATTCCTAGAAATTGTTCA #rat_gr315972_libT1S2 19 5 sblock12691 TCCTAGAAATTGTTCACAA #rat_gr870006_libT1S2 19 4 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT4S2 21 4 sblock12691 TTCCTAGAAATTGTTCACAATGC #rat_gr1121041_libT1S2 23 3 sblock12691 TCCTAGAAATTGTTCACA #rat_gr870005_libT1S1 18 3 sblock12691 ATTCCTAGAAATTGTTCACAATGC #rat_gr242205_libT1S1 24 2 sblock12691 TTCCTAGAAATTGTTCACAATG #rat_gr1121040_libT1S1 22 2 sblock12691 TTCCTAGAAATTGTTCACAATG #rat_gr1121040_libT1S2 22 2 sblock12691 TCCTAGAAATTGTTCACAAT #rat_gr870007_libT1S1 20 2 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT4S1 22 2 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT3S1 21 2 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT5S1 21 2 sblock12691 ATTCCTAGAAATTGTTCACA #rat_gr242201_libT5S1 20 2 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT2S2 19 2 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT3S1 19 2 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT4S1 19 2 sblock12691 ATTCCTAGAAATTGTTCAC #rat_gr242200_libT4S2 19 2 sblock12691 TTCCTAGAAATTGTTCACAATGCC #rat_gr1121042_libT1S1 24 1 sblock12691 TTCCTAGAAATTGTTCACAATGC #rat_gr1121041_libT1S1 23 1 sblock12691 ATTCCTAGAAATTGTTCACAATG #rat_gr242204_libT1S1 23 1 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libMirbase_rno-miR-384-3p 22 1 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT2S1 22 1 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT4S2 22 1 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT5S1 22 1 sblock12691 ATTCCTAGAAATTGTTCACAAT #rat_gr242203_libT5S2 22 1 sblock12691 TCCTAGAAATTGTTCACAA #rat_gr870006_libT1S1 19 1 sblock12691 ATTCCTAGAAATTGTTCACAA #rat_gr242202_libT4S1 21 1 sblock12691 TCATTCCTAGAAATTGTTCACAA #rat_gr825024_libT5S1 23 1 sblock12691 ATTCCTAGAAATTGTTCACA #rat_gr242201_libT4S2 20 1 sblock12691 TCATTCCTAGAAATTGTTCACA #rat_gr825023_libT2S1 22 1 sblock12691 TCATTCCTAGAAATTGTTCACA #rat_gr825023_libT4S1 22 1 sblock12691 TCATTCCTAGAAATTGTTCACA #rat_gr825023_libT5S1 22 1 sblock12691 GTCATTCCTAGAAATTGTTCACA #rat_gr634876_libT1S2 23 1 sblock12691 TCATTCCTAGAAATTGTTCAC #rat_gr825022_libT3S1 21 1 sblock12691 TCATTCCTAGAAATTGTTCAC #rat_gr825022_libT3S2 21 1 sblock12691 TCATTCCTAGAAATTGTTCAC #rat_gr825022_libT5S1 21 1 sblock12691 AGTCATTCCTAGAAATTGTTCAC #rat_gr196802_libT1S2 23 1 sblock12691 ATTCCTAGAAATTGTTCA #rat_gr242199_libT3S2 18 1 sblock12691 TCATTCCTAGAAATTGTT #rat_gr825019_libT5S2 18 1 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT1S1 23 4384 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT1S2 23 2337 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT1S1 19 1233 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT1S1 20 857 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT1S2 19 815 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT1S1 22 772 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT1S2 20 654 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT1S1 18 552 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT1S2 22 454 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT1S1 21 438 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT1S2 18 331 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT1S2 21 298 sblock12691 GTAAACAATTCCTAGGCAATGT #rat_gr626706_libT1S1 22 220 sblock12691 TGTAAACAATTCCTAGGCAATGTG #rat_gr1072898_libT1S1 24 102 sblock12691 GTAAACAATTCCTAGGCAATGT #rat_gr626706_libT1S2 22 97 sblock12691 GTAAACAATTCCTAGGCAA #rat_gr626703_libT1S1 19 75 sblock12691 TAAACAATTCCTAGGCAATGTGT #rat_gr693314_libT1S1 23 60 sblock12691 GTAAACAATTCCTAGGCAA #rat_gr626703_libT1S2 19 55 sblock12691 GTAAACAATTCCTAGGCA #rat_gr626702_libT1S1 18 54 sblock12691 GTAAACAATTCCTAGGCAATG #rat_gr626705_libT1S1 21 39 sblock12691 TGTAAACAATTCCTAGGCAATGTG #rat_gr1072898_libT1S2 24 38 sblock12691 TAAACAATTCCTAGGCAA #rat_gr693309_libT1S1 18 33 sblock12691 TGTAAACAATTCCTAGGCAATGTGT #rat_gr1072899_libT1S1 25 31 sblock12691 TAAACAATTCCTAGGCAATGTGT #rat_gr693314_libT1S2 23 30 sblock12691 GTAAACAATTCCTAGGCA #rat_gr626702_libT1S2 18 30 sblock12691 TAAACAATTCCTAGGCAATGTG #rat_gr693313_libT1S1 22 24 sblock12691 TAAACAATTCCTAGGCAATGT #rat_gr693312_libT1S1 21 21 sblock12691 TAAACAATTCCTAGGCAATGTG #rat_gr693313_libT1S2 22 19 sblock12691 GTAAACAATTCCTAGGCAATGTG #rat_gr626707_libT1S1 23 19 sblock12691 GTAAACAATTCCTAGGCAATG #rat_gr626705_libT1S2 21 19 sblock12691 GTAAACAATTCCTAGGCAAT #rat_gr626704_libT1S1 20 19 sblock12691 TAAACAATTCCTAGGCAA #rat_gr693309_libT1S2 18 19 sblock12691 GTAAACAATTCCTAGGCAATGTGT #rat_gr626708_libT1S1 24 18 sblock12691 TAAACAATTCCTAGGCAAT #rat_gr693310_libT1S1 19 18 sblock12691 TAAACAATTCCTAGGCAAT #rat_gr693310_libT1S2 19 18 sblock12691 GTAAACAATTCCTAGGCAAT #rat_gr626704_libT1S2 20 17 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT5S1 23 15 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT4S2 23 12 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT5S2 23 12 sblock12691 TAAACAATTCCTAGGCAATG #rat_gr693311_libT1S1 20 12 sblock12691 TAAACAATTCCTAGGCAATGT #rat_gr693312_libT1S2 21 8 sblock12691 TAAACAATTCCTAGGCAATG #rat_gr693311_libT1S2 20 8 sblock12691 TGTAAACAATTCCTAGGCAATGTGT #rat_gr1072899_libT1S2 25 6 sblock12691 GTAAACAATTCCTAGGCAATGTG #rat_gr626707_libT1S2 23 6 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT3S1 23 6 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT5S1 19 6 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT4S1 23 5 sblock12691 AAACAATTCCTAGGCAATG #rat_gr11353_libT1S2 19 5 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT4S1 20 5 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT5S2 19 5 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT4S2 19 4 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT2S1 23 3 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT3S2 23 3 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT3S2 22 3 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT4S1 19 3 sblock12691 GTAAACAATTCCTAGGCAATGTGT #rat_gr626708_libT1S2 24 2 sblock12691 AAACAATTCCTAGGCAATGT #rat_gr11354_libT1S1 20 2 sblock12691 AAACAATTCCTAGGCAATGT #rat_gr11354_libT1S2 20 2 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libT2S2 23 2 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT4S1 22 2 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT4S2 22 2 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT5S1 21 2 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT3S1 20 2 sblock12691 AAACAATTCCTAGGCAATGTGT #rat_gr11355_libT1S1 22 1 sblock12691 AAACAATTCCTAGGCAATGTGT #rat_gr11355_libT1S2 22 1 sblock12691 TAAACAATTCCTAGGCAATGTG #rat_gr693313_libT4S2 22 1 sblock12691 GTAAACAATTCCTAGGCAATGTG #rat_gr626707_libT5S2 23 1 sblock12691 GTAAACAATTCCTAGGCAATGT #rat_gr626706_libT4S2 22 1 sblock12691 GTAAACAATTCCTAGGCAATGT #rat_gr626706_libT5S1 22 1 sblock12691 TGTAAACAATTCCTAGGCAATGT #rat_gr1072897_libMirbase_rno-miR-384-5p 23 1 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT2S1 22 1 sblock12691 TGTAAACAATTCCTAGGCAATG #rat_gr1072896_libT5S1 22 1 sblock12691 AAACAATTCCTAGGCAAT #rat_gr11352_libT1S2 18 1 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT3S1 21 1 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT3S2 21 1 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT4S2 21 1 sblock12691 TGTAAACAATTCCTAGGCAAT #rat_gr1072895_libT5S2 21 1 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT2S1 20 1 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT3S2 20 1 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT4S2 20 1 sblock12691 TGTAAACAATTCCTAGGCAA #rat_gr1072894_libT5S1 20 1 sblock12691 TTGTAAACAATTCCTAGGCAA #rat_gr1147198_libT1S1 21 1 sblock12691 GTAAACAATTCCTAGGCA #rat_gr626702_libT3S1 18 1 sblock12691 GTAAACAATTCCTAGGCA #rat_gr626702_libT4S1 18 1 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT2S2 19 1 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT3S1 19 1 sblock12691 TGTAAACAATTCCTAGGCA #rat_gr1072893_libT3S2 19 1 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT4S1 18 1 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT4S2 18 1 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT5S1 18 1 sblock12691 TGTAAACAATTCCTAGGC #rat_gr1072892_libT5S2 18 1 sblock12691 ------------------AATCAGGAATTGTAAACAATTCCTAGGCAATGTGTATAATGTTGGTAAGTCATTCCTAGAAATTGTTCACAATGCCTGTAACA------------------ human61p86 ----------------------------TGTAAACAATTCCTAGGAAATGGTT----TGCTGCTGCATTGTTACCTGGAATTGT---------------CA------------------ mouseZ34p86 TCTTGCAGCGGAATGTTAAATCAGGAATTGTAAACAATTCCTAGGCAATGTGTATAATGTTGGTAAGTCATTCCTAGAAATTGTTCACAATGCCTGTAACATATATTCAGCTAGCAAGA ***************** **** * ** ** * * ** * * ****** ** sblock12691 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053678 ENSRNOG00000035555 rno-mir-384 sblock12691 ...((((.(((((.(((((((.(((((.((((..(((.......)))...))))))))).))))))).))))).))))..... 1.000 -26.40 # human61p86 .....((((((((.(((.((..((. .((....))))..)).))))))))))) .. 1.000 -16.70 # mouseZ34p86 (((((((((.((((((.....((((.(((((.(((((((.(((((.((((..(((.......)))...))))))))).))))))).))))).))))......)))))).))).)))))) 0.974 -43.90 # #sblock12691 chromosome:X:93446892:93446974:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053678|ENSRNOG00000035555 ## Same_strand|Boundary_non-coding|ENSRNOT00000053678|ENSRNOG00000035555 ## ENSRNOG00000035555|miRNA|rno-mir-384|rno-mir-384 [Source:miRBase;Acc:MI0006142] ## {MIR: rno-mir-384} #human61p86 chromosome:6:49707474:49707596:-1 Same_strand|Intronic_coding|ENST00000371175|ENSG00000112077|protein_coding|Rhesus blood group-associated glycoprotein (Rhesus blood group-associated ammonia channel)(Erythrocyte plasma membrane 50 kDa glycoprotein)(Rh50A)(CD241 antigen) [Source:UniProtKB/Swiss-Prot;Acc:Q02094] #mouseZ34p86 chromosome:X:102539603:102539721:-1 Same_strand|Boundary_non-coding|ENSMUST00000083565|ENSMUSG00000065499|miRNA|mmu-mir-384 [Source:miRBase;Acc:MI0001146] ## {MIR: mmu-mir-384} ========== sblock12716 (miRBase rno-mir-19b-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12716: 0.001 randfold humanZ14p86_sblock12716: 0.001 randfold mouseZ43p86_sblock12716: 0.001 #forester humanZ14p86_sblock12716: 0.759808 forester mouseZ43p86_sblock12716: 0.979647 #identity: 93.42 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT3S2 22 18671 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT3S1 22 17095 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT5S2 22 8233 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT2S1 22 5829 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT2S2 22 5631 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT5S1 22 5626 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT3S1 18 5521 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT3S2 18 4843 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT3S1 20 4707 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT3S2 20 4284 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT3S2 21 3597 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT3S1 21 3202 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT4S2 22 2720 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT2S1 18 2262 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT4S1 22 2146 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT5S2 18 2040 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT2S2 18 2016 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT1S1 22 1872 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT2S2 20 1744 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT5S2 20 1728 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT2S1 20 1673 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT5S1 18 1488 sblock12716 TGTGCAAATCCATGCAAAACTG #rat_gr1084643_libT1S2 22 1464 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT5S2 21 1359 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT5S1 20 1298 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT2S2 21 1128 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT4S2 18 1060 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT5S1 21 1032 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT2S1 21 1028 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT3S2 19 850 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT4S2 20 764 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT1S1 18 682 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT3S1 19 680 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT4S2 21 674 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT4S1 18 622 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT1S1 21 592 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT1S1 20 567 sblock12716 TGTGCAAATCCATGCAAA #rat_gr1084639_libT1S2 18 550 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT4S1 20 470 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT4S1 21 452 sblock12716 TGTGCAAATCCATGCAAAACT #rat_gr1084642_libT1S2 21 430 sblock12716 TGTGCAAATCCATGCAAAAC #rat_gr1084641_libT1S2 20 402 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT5S2 19 345 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT2S2 19 304 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT2S1 19 298 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT5S1 19 283 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT3S1 23 278 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT3S2 23 251 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT5S2 23 223 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT2S1 23 200 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT3S1 21 176 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT2S2 23 172 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT4S2 19 158 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT3S2 21 113 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT1S1 19 112 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT5S1 23 110 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT1S2 19 110 sblock12716 TGTGCAAATCCATGCAAAA #rat_gr1084640_libT4S1 19 89 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT3S1 23 73 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT5S2 21 71 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT4S2 23 53 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT5S1 21 53 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT3S2 23 50 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT2S1 21 47 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT2S2 21 47 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT4S1 23 45 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT1S1 23 36 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT3S1 20 33 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT3S1 18 33 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT3S1 19 31 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT3S2 19 29 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT3S2 20 27 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT4S1 21 26 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT5S1 23 24 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT3S2 21 22 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT3S1 21 19 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT3S2 18 19 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libT1S2 23 18 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT4S2 21 18 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT2S2 19 17 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT1S2 21 16 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT5S1 19 15 sblock12716 GTGCAAATCCATGCAAAACTG #rat_gr645844_libT1S1 21 14 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT5S2 20 14 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT3S1 19 14 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT3S2 19 14 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT3S1 22 13 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT5S2 23 12 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT2S2 20 12 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT2S2 23 10 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT4S2 20 9 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT3S2 22 9 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT2S1 19 9 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT4S2 19 9 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT5S2 24 8 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT5S1 21 8 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT5S1 22 7 sblock12716 GTGCAAATCCATGCAAAA #rat_gr645841_libT3S1 18 7 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT5S1 18 7 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT5S2 19 6 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT1S1 20 5 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT1S2 20 5 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT4S1 20 5 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT1S1 22 5 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT4S1 19 5 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT4S2 23 4 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT4S2 22 4 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT5S2 22 4 sblock12716 GTGCAAATCCATGCAAAACTGAT #rat_gr645847_libT2S2 23 3 sblock12716 GCAAATCCATGCAAAACTG #rat_gr526310_libT3S2 19 3 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT2S1 20 3 sblock12716 GTGCAAATCCATGCAAAAC #rat_gr645842_libT1S1 19 3 sblock12716 GTGCAAATCCATGCAAAA #rat_gr645841_libT3S2 18 3 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT5S1 19 3 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT5S2 19 3 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT2S1 18 3 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT2S1 24 2 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT2S2 24 2 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT3S1 24 2 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT3S2 24 2 sblock12716 GTGCAAATCCATGCAAAACTGA #rat_gr645845_libT2S1 22 2 sblock12716 GCAAATCCATGCAAAACTG #rat_gr526310_libT5S1 19 2 sblock12716 TGCAAATCCATGCAAAACTG #rat_gr958726_libT2S2 20 2 sblock12716 TGCAAATCCATGCAAAACTG #rat_gr958726_libT3S1 20 2 sblock12716 GTGCAAATCCATGCAAAACT #rat_gr645843_libT5S1 20 2 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT2S1 22 2 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT5S2 21 2 sblock12716 GTGCAAATCCATGCAAAA #rat_gr645841_libT2S2 18 2 sblock12716 CTGTGCAAATCCATGCAAAA #rat_gr455454_libT3S2 20 2 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT2S2 18 2 sblock12716 TGTGCAAATCCATGCAAAACTGATTG #rat_gr1084648_libT3S1 26 1 sblock12716 GTGCAAATCCATGCAAAACTGAT #rat_gr645847_libT3S1 23 1 sblock12716 GTGCAAATCCATGCAAAACTGAT #rat_gr645847_libT3S2 23 1 sblock12716 GTGCAAATCCATGCAAAACTGAT #rat_gr645847_libT5S2 23 1 sblock12716 TGTGCAAATCCATGCAAAACTGAT #rat_gr1084647_libT5S1 24 1 sblock12716 GTGCAAATCCATGCAAAACTGA #rat_gr645845_libT2S2 22 1 sblock12716 GTGCAAATCCATGCAAAACTGA #rat_gr645845_libT3S1 22 1 sblock12716 GTGCAAATCCATGCAAAACTGA #rat_gr645845_libT3S2 22 1 sblock12716 TGTGCAAATCCATGCAAAACTGA #rat_gr1084644_libMirbase_rno-miR-19b 23 1 sblock12716 CTGTGCAAATCCATGCAAAACTGA #rat_gr455458_libT3S1 24 1 sblock12716 CTGTGCAAATCCATGCAAAACTGA #rat_gr455458_libT5S1 24 1 sblock12716 CTGTGCAAATCCATGCAAAACTGA #rat_gr455458_libT5S2 24 1 sblock12716 CAAATCCATGCAAAACTG #rat_gr261984_libT3S1 18 1 sblock12716 CAAATCCATGCAAAACTG #rat_gr261984_libT5S1 18 1 sblock12716 TGCAAATCCATGCAAAACTG #rat_gr958726_libT3S2 20 1 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT1S1 23 1 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT1S2 23 1 sblock12716 CTGTGCAAATCCATGCAAAACTG #rat_gr455457_libT4S1 23 1 sblock12716 GCAAATCCATGCAAAACT #rat_gr526309_libT5S2 18 1 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT1S2 22 1 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT2S2 22 1 sblock12716 CTGTGCAAATCCATGCAAAACT #rat_gr455456_libT4S1 22 1 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT2S1 21 1 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT2S2 21 1 sblock12716 CTGTGCAAATCCATGCAAAAC #rat_gr455455_libT4S2 21 1 sblock12716 GTGCAAATCCATGCAAAA #rat_gr645841_libT1S1 18 1 sblock12716 CTGTGCAAATCCATGCAAAA #rat_gr455454_libT3S1 20 1 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT2S1 19 1 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT4S1 19 1 sblock12716 CTGTGCAAATCCATGCAAA #rat_gr455453_libT4S2 19 1 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT1S2 18 1 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT4S1 18 1 sblock12716 CTGTGCAAATCCATGCAA #rat_gr455452_libT5S2 18 1 sblock12716 AGTTTTGCAGATTTGCAGTTCAGC #rat_gr204558_libT3S2 24 1 sblock12716 --------ACATTGCTACTTACGGTTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGGATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGATGATGT------------ humanZ14p86 -------------------------TAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATGTGGCTGTGCAAATCCATGCAAAACTG------------------------- mouseZ43p86 GCGCAAGGACATTGCTACTTACGATTAGTTTTGCAGATTTGCAGTTCAGCGTATATGTGAATATATGGCTGTGCAAATCCATGCAAAACTGATTGTGGGAATGTGTACCTTTCTGC *********** ****** ************ ** **** ************************** sblock12716 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053702 ENSRNOG00000035579 rno-mir-19b-2 sblock12716 ((((((....(((((((((((((((((((((((((...((((((((((....)))))).))))))))))))..))))))))))))))))))))))) 1.000 -38.40 # humanZ14p86 (((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))) 1.000 -28.00 # mouseZ43p86 (((.((((((((.....((((((((((((((((((((((((((...((((((((((....))))))).)))))))))))..))))))))))))))))))...)))).))))..))) 0.998 -48.30 # #sblock12716 chromosome:X:139740932:139741027:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053702|ENSRNOG00000035579 ## ENSRNOG00000035579|miRNA|rno-mir-19b-2|rno-mir-19b-2 [Source:miRBase;Acc:MI0000848] ## {MIR: rno-mir-19b-2} #humanZ14p86 chromosome:X:133131347:133131482:-1 Same_strand|Boundary_non-coding|ENST00000385077|ENSG00000207812|miRNA|hsa-mir-19b-2 [Source:miRBase;Acc:MI0000075] ## {MIR: hsa-mir-19b-2} #mouseZ43p86 chromosome:X:50095144:50095259:-1 Same_strand|Boundary_non-coding|ENSMUST00000083539|ENSMUSG00000065473|miRNA|mmu-mir-19b-2 [Source:miRBase;Acc:MI0000546] ## {MIR: mmu-mir-19b-2} ========== sblock12722 (miRBase rno-mir-542) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12722: 0.001 randfold humanZ21p86_sblock12722: 0.001 randfold mouseZ51p86_sblock12722: 0.001 #forester humanZ21p86_sblock12722: 0.87489 forester mouseZ51p86_sblock12722: 0.874634 #identity: 94.59 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT5S1 20 405 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT4S2 20 304 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT5S2 20 265 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT4S1 20 255 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT5S1 22 237 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT5S1 23 234 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT5S2 22 229 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT3S1 20 229 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT1S1 20 216 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT1S2 20 193 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT3S2 20 150 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT5S2 21 147 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT5S2 23 140 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT5S1 21 135 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT1S1 22 133 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT2S1 20 132 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT4S2 22 130 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT3S1 22 127 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT4S2 23 126 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT1S2 22 111 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT3S1 23 109 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT1S1 21 104 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT4S1 22 98 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT4S2 21 97 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT4S2 19 95 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT5S1 19 95 sblock12722 TGTGACAGATTGATAACTGA #rat_gr1083338_libT2S2 20 88 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT3S1 21 81 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT5S1 18 80 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT3S2 23 79 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT4S1 23 77 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT3S2 22 72 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT1S2 21 68 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT1S1 23 66 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT2S1 23 66 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT3S2 21 62 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT4S2 18 61 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT2S2 22 59 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libT2S1 22 56 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT5S2 19 55 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT3S1 18 55 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT4S1 21 53 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT3S1 19 53 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT3S2 19 52 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT1S2 23 51 sblock12722 TGTGACAGATTGATAACTGAAAG #rat_gr1083341_libT2S2 23 51 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT1S1 19 50 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT1S2 18 49 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT2S1 21 47 sblock12722 TGTGACAGATTGATAACTGAA #rat_gr1083339_libT2S2 21 46 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT4S1 18 42 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT5S2 18 42 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT1S1 18 40 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT1S2 19 39 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT2S1 19 35 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT4S1 19 35 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT3S2 18 33 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT2S1 18 28 sblock12722 TGTGACAGATTGATAACT #rat_gr1083336_libT2S2 18 22 sblock12722 TGTGACAGATTGATAACTG #rat_gr1083337_libT2S2 19 17 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT1S1 21 11 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT5S2 21 10 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT5S1 21 9 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT1S2 21 7 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT3S1 24 5 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT5S2 24 5 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT2S2 21 5 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT4S2 21 5 sblock12722 GTGACAGATTGATAACTGAAAG #rat_gr643869_libT5S1 22 5 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT4S1 24 4 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT4S2 24 4 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT5S1 24 4 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT3S1 21 4 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT3S2 21 4 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT4S1 21 4 sblock12722 GTGACAGATTGATAACTGAAA #rat_gr643868_libT5S2 21 4 sblock12722 TGACAGATTGATAACTGAA #rat_gr932232_libT5S2 19 4 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT3S1 20 4 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT1S1 19 4 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT3S1 19 4 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT4S2 19 4 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT5S2 19 4 sblock12722 GTGACAGATTGATAACTGAAAG #rat_gr643869_libT3S1 22 3 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT1S2 20 3 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT4S1 20 3 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT5S1 20 3 sblock12722 GTGACAGATTGATAACTGAAA #rat_gr643868_libT3S2 21 3 sblock12722 TGACAGATTGATAACTGAA #rat_gr932232_libT1S2 19 3 sblock12722 TGACAGATTGATAACTGAA #rat_gr932232_libT3S1 19 3 sblock12722 TGACAGATTGATAACTGAA #rat_gr932232_libT4S2 19 3 sblock12722 TGACAGATTGATAACTGAA #rat_gr932232_libT5S1 19 3 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT2S2 20 3 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT4S2 20 3 sblock12722 TGACAGATTGATAACTGA #rat_gr932231_libT1S2 18 3 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT1S1 21 3 sblock12722 TGACAGATTGATAACTGAAAGGTC #rat_gr932236_libT3S1 24 2 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT1S1 24 2 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT1S2 24 2 sblock12722 TGACAGATTGATAACTGAAAG #rat_gr932234_libT2S1 21 2 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT1S1 20 2 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT4S1 20 2 sblock12722 TTGTGACAGATTGATAACTGAA #rat_gr1149644_libT5S2 22 2 sblock12722 TGACAGATTGATAACTGA #rat_gr932231_libT1S1 18 2 sblock12722 TGACAGATTGATAACTGA #rat_gr932231_libT3S1 18 2 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT3S1 21 2 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT3S2 18 2 sblock12722 TGACAGATTGATAACTGAAAGGTC #rat_gr932236_libT4S1 24 1 sblock12722 TGACAGATTGATAACTGAAAGG #rat_gr932235_libT1S2 22 1 sblock12722 TGACAGATTGATAACTGAAAGG #rat_gr932235_libT5S1 22 1 sblock12722 TGTGACAGATTGATAACTGAAAGG #rat_gr1083342_libT3S2 24 1 sblock12722 GACAGATTGATAACTGAAAG #rat_gr493366_libT1S1 20 1 sblock12722 GTGACAGATTGATAACTGAAAG #rat_gr643869_libT2S2 22 1 sblock12722 GTGACAGATTGATAACTGAAAG #rat_gr643869_libT4S1 22 1 sblock12722 GTGACAGATTGATAACTGAAAG #rat_gr643869_libT5S2 22 1 sblock12722 TTGTGACAGATTGATAACTGAAAG #rat_gr1149646_libT5S1 24 1 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT1S1 20 1 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT4S2 20 1 sblock12722 TGACAGATTGATAACTGAAA #rat_gr932233_libT5S2 20 1 sblock12722 GTGACAGATTGATAACTGAAA #rat_gr643868_libT1S2 21 1 sblock12722 GTGACAGATTGATAACTGAAA #rat_gr643868_libT4S2 21 1 sblock12722 GTGACAGATTGATAACTGAAA #rat_gr643868_libT5S1 21 1 sblock12722 TGTGACAGATTGATAACTGAAA #rat_gr1083340_libMirbase_rno-miR-542-3p 22 1 sblock12722 TTGTGACAGATTGATAACTGAAA #rat_gr1149645_libT4S1 23 1 sblock12722 GTGACAGATTGATAACTGAA #rat_gr643867_libT3S2 20 1 sblock12722 TTGTGACAGATTGATAACTGAA #rat_gr1149644_libT3S2 22 1 sblock12722 TGACAGATTGATAACTGA #rat_gr932231_libT4S1 18 1 sblock12722 TGACAGATTGATAACTGA #rat_gr932231_libT5S2 18 1 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT3S2 19 1 sblock12722 GTGACAGATTGATAACTGA #rat_gr643866_libT5S1 19 1 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT2S2 21 1 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT3S2 21 1 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT4S1 21 1 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT5S1 21 1 sblock12722 TTGTGACAGATTGATAACTGA #rat_gr1149643_libT5S2 21 1 sblock12722 GTGACAGATTGATAACTG #rat_gr643865_libT3S2 18 1 sblock12722 GTGACAGATTGATAACTG #rat_gr643865_libT4S2 18 1 sblock12722 GTGACAGATTGATAACTG #rat_gr643865_libT5S1 18 1 sblock12722 GTGACAGATTGATAACTG #rat_gr643865_libT5S2 18 1 sblock12722 TTGTGACAGATTGATAACTG #rat_gr1149642_libT4S1 20 1 sblock12722 TTGTGACAGATTGATAACT #rat_gr1149641_libT5S1 19 1 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT1S1 18 1 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT2S1 18 1 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT4S2 18 1 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT5S1 18 1 sblock12722 TTGTGACAGATTGATAAC #rat_gr1149640_libT5S2 18 1 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT5S1 22 94 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT5S2 22 84 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT5S1 20 77 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT4S2 22 64 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT1S1 22 60 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT5S2 20 58 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT4S1 22 53 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT5S1 21 48 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT1S2 22 47 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT4S1 20 46 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT5S2 21 45 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT1S1 20 45 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT3S1 21 41 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT4S2 21 41 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT3S1 22 38 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT4S1 21 38 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT4S2 20 37 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT1S2 20 36 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT3S1 20 35 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT1S2 21 33 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT1S1 21 30 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT2S1 22 29 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT3S2 22 29 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT5S1 19 29 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT3S2 20 26 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT2S1 21 23 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT2S2 20 20 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT3S1 19 19 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT5S1 18 19 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libT2S2 22 18 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT1S2 18 18 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT5S2 18 18 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT4S1 18 17 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT1S1 18 16 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT4S2 18 16 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT5S2 19 15 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT1S1 19 14 sblock12722 CTCGGGGATCATCATGTCAC #rat_gr428328_libT2S1 20 13 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT1S2 19 13 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT3S1 18 11 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT3S2 19 10 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT2S1 18 10 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT3S2 21 9 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT4S2 19 8 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT5S1 23 6 sblock12722 CTCGGGGATCATCATGTCACG #rat_gr428329_libT2S2 21 6 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT4S1 19 6 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT3S2 18 5 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT4S2 23 4 sblock12722 TCGGGGATCATCATGTCACGA #rat_gr890543_libT5S1 21 4 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT2S2 19 4 sblock12722 TCGGGGATCATCATGTCA #rat_gr890540_libT5S1 18 3 sblock12722 TCGGGGATCATCATGTCA #rat_gr890540_libT5S2 18 3 sblock12722 CTCGGGGATCATCATGTCA #rat_gr428327_libT2S1 19 3 sblock12722 CTCGGGGATCATCATGTC #rat_gr428326_libT2S2 18 3 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT3S1 23 2 sblock12722 TCGGGGATCATCATGTCACG #rat_gr890542_libT4S1 20 2 sblock12722 TCGGGGATCATCATGTCACGAGA #rat_gr890545_libT4S1 23 1 sblock12722 TCGGGGATCATCATGTCACGAGA #rat_gr890545_libT4S2 23 1 sblock12722 TCGGGGATCATCATGTCACGAGA #rat_gr890545_libT5S1 23 1 sblock12722 TCGGGGATCATCATGTCACGAGA #rat_gr890545_libT5S2 23 1 sblock12722 TCGGGGATCATCATGTCACGAG #rat_gr890544_libT4S2 22 1 sblock12722 TCGGGGATCATCATGTCACGAG #rat_gr890544_libT5S1 22 1 sblock12722 TCGGGGATCATCATGTCACGAG #rat_gr890544_libT5S2 22 1 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT1S1 23 1 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT4S1 23 1 sblock12722 CTCGGGGATCATCATGTCACGAG #rat_gr428331_libT5S2 23 1 sblock12722 TCGGGGATCATCATGTCACGA #rat_gr890543_libT1S2 21 1 sblock12722 TCGGGGATCATCATGTCACGA #rat_gr890543_libT3S1 21 1 sblock12722 TCGGGGATCATCATGTCACGA #rat_gr890543_libT4S1 21 1 sblock12722 CTCGGGGATCATCATGTCACGA #rat_gr428330_libMirbase_rno-miR-542-5p 22 1 sblock12722 TCGGGGATCATCATGTCACG #rat_gr890542_libT4S2 20 1 sblock12722 TCGGGGATCATCATGTCAC #rat_gr890541_libT4S2 19 1 sblock12722 TCGGGGATCATCATGTCAC #rat_gr890541_libT5S1 19 1 sblock12722 TCGGGGATCATCATGTCA #rat_gr890540_libT1S1 18 1 sblock12722 TCGGGGATCATCATGTCA #rat_gr890540_libT3S2 18 1 sblock12722 TCGGGGATCATCATGTCA #rat_gr890540_libT4S2 18 1 sblock12722 TCTCGGGGATCATCATGT #rat_gr901549_libT5S2 18 1 sblock12722 -------------------TCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGCGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGA------------ humanZ21p86 -------AGGATGCACAGATCTCAGACATCTCGGGGATCATCATGTCACGAGATACCAGTGTGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCCACTCATCTT mouseZ51p86 GAGGTTACACATGCAGGGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCCACTCCTC-- ******** ****************************** ** ** ********************************* sblock12722 ----- ------------------------------------------------------------------------------- ----- #ENSRNOT00000046779 ENSRNOG00000037484 sblock12722 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054659 ENSRNOG00000036555 rno-mir-542 sblock12722 ((((((((.(.((((..((((...(((((((((.............)))))))))...))))..)))).).)))))))) 1.000 -34.52 # humanZ21p86 ((((((......((((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...))))))))......)))))) 1.000 -40.80 # mouseZ51p86 ((((..........((((.((((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))).)).)))))) 0.961 -40.80 # #sblock12722 chromosome:X:139996190:139996268:-1 Same_strand|Boundary_non-coding|ENSRNOT00000054659|ENSRNOG00000036555 ## Opposite_strand|Intronic_coding|ENSRNOT00000046779|ENSRNOG00000037484 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000056740|ENSRNOG00000037484 ## Same_strand|Exonic_non-coding|ENSRNOT00000054659|ENSRNOG00000036555 ## ENSRNOG00000036555|miRNA|rno-mir-542|rno-mir-542 [Source:miRBase;Acc:MI0003528] ## ENSRNOG00000037484|protein_coding|| ## {MIR: rno-mir-542} #humanZ21p86 chromosome:X:133503039:133503141:-1 Same_strand|Boundary_non-coding|ENST00000385050|ENSG00000207784|miRNA|hsa-mir-542 [Source:miRBase;Acc:MI0003686] ## {MIR: hsa-mir-542} #mouseZ51p86 chromosome:X:50402573:50402680:-1 Same_strand|Boundary_non-coding|ENSMUST00000102186|ENSMUSG00000076140|miRNA|mmu-mir-542 [Source:miRBase;Acc:MI0003522] ## {MIR: mmu-mir-542} ========== sblock12734 (miRBase rno-mir-742) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12734: 0.001 randfold human5p87_sblock12734: 0.020 randfold mouse2p87_sblock12734: 0.002 #forester human5p87_sblock12734: 0.373429 forester mouse2p87_sblock12734: 0.863201 #identity: 72.09 sblock12734 GAAAGCCACCATGTTGGGTAAA #rat_gr479959_libT5S1 22 39 sblock12734 GAAAGCCACCATGTTGGGT #rat_gr479956_libT5S1 19 17 sblock12734 GAAAGCCACCATGTTGGGTAA #rat_gr479958_libT5S1 21 11 sblock12734 GAAAGCCACCATGTTGGGTA #rat_gr479957_libT5S1 20 7 sblock12734 GAAAGCCACCATGTTGGGTAAA #rat_gr479959_libT1S2 22 4 sblock12734 GAAAGCCACCATGTTGGGT #rat_gr479956_libT1S1 19 4 sblock12734 GAAAGCCACCATGTTGGGTAA #rat_gr479958_libT1S2 21 3 sblock12734 GAAAGCCACCATGTTGGGT #rat_gr479956_libT1S2 19 3 sblock12734 GAAAGCCACCATGTTGGG #rat_gr479955_libT1S1 18 3 sblock12734 AGCCACCATGTTGGGTAAA #rat_gr157122_libT5S1 19 1 sblock12734 AAAGCCACCATGTTGGGTAAA #rat_gr16837_libT5S1 21 1 sblock12734 GAAAGCCACCATGTTGGGTAAA #rat_gr479959_libMirbase_rno-miR-742 22 1 sblock12734 GAAAGCCACCATGTTGGGTAAA #rat_gr479959_libT1S1 22 1 sblock12734 GAAAGCCACCATGTTGGGTAAA #rat_gr479959_libT5S2 22 1 sblock12734 AAAGCCACCATGTTGGGTAA #rat_gr16836_libT5S1 20 1 sblock12734 GAAAGCCACCATGTTGGGTAA #rat_gr479958_libT1S1 21 1 sblock12734 GAAAGCCACCATGTTGGGTAA #rat_gr479958_libT3S2 21 1 sblock12734 GAAAGCCACCATGTTGGGTA #rat_gr479957_libT2S1 20 1 sblock12734 GAAAGCCACCATGTTGGGTA #rat_gr479957_libT2S2 20 1 sblock12734 GAAAGCCACCATGTTGGGT #rat_gr479956_libT5S2 19 1 sblock12734 GAAAGCCACCATGTTGGG #rat_gr479955_libT1S2 18 1 sblock12734 GAAAGCCACCATGTTGGG #rat_gr479955_libT2S1 18 1 sblock12734 GAAAGCCACCATGTTGGG #rat_gr479955_libT4S2 18 1 sblock12734 GAAAGCCACCATGTTGGG #rat_gr479955_libT5S1 18 1 sblock12734 TACTCACATGGTTGCTAATCAC #rat_gr754178_libT5S1 22 5 sblock12734 TACTCACATGGTTGCTAATC #rat_gr754177_libT5S1 20 2 sblock12734 GGCAGTGCTTTACTCACATGGTTGCTAATCACGTGAAATGTAAGTGAAAGCCACCATGTTGGGTAAAGTAAAGCTCA human5p87 -------TTCTAGACACAAGTGGGCTCATTA---ACAGCGACTCTGAAAGCCACCATGTTTCTAGAA---------- mouse2p87 --------TCTACTCACATGGTTGCTAATCACGTGAAGTGTAGGTGAAAGCCACCATGCTGGGTAAA---------- * ** **** * *** ** * * * ************** * ** sblock12734 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000062175 ENSRNOG00000040422 rno-mir-742 sblock12734 (((..(((((((((((((((((.(((..((((...........)))).))).)))))).)))))))))))..))).. 1.000 -32.90 # human5p87 .((((((.(((....((((..... .(((.....)))..))))....))).)))))). 0.992 -14.40 # mouse2p87 ..((((((((((((.(((..((((.((.....)).)))).))).)))))).)))))).. 0.996 -22.70 # #sblock12734 chromosome:X:152829269:152829345:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062175|ENSRNOG00000040422 ## ENSRNOG00000040422|miRNA|rno-mir-742|rno-mir-742 [Source:miRBase;Acc:MI0006161] ## {MIR: rno-mir-742} #human5p87 chromosome:14:72438702:72438818:1 intergenic #mouse2p87 chromosome:X:64033521:64033637:-1 Same_strand|Boundary_non-coding|ENSMUST00000103904|ENSMUSG00000077092|miRNA|mmu-mir-742 [Source:miRBase;Acc:MI0005206] ## {MIR: mmu-mir-742} ========== sblock12735 (miRBase rno-mir-471) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12735: 0.001 randfold mouseZ3p87_sblock12735: 0.001 #forester mouseZ3p87_sblock12735: 0.910609 #identity: 97.44 sblock12735 TGAAAGGTGCCATACTATG #rat_gr923137_libT1S1 19 2 sblock12735 TGAAAGGTGCCATACTATGTACA #rat_gr923139_libT5S1 23 1 sblock12735 GAAAGGTGCCATACTATGTA #rat_gr480318_libT1S1 20 1 sblock12735 GAAAGGTGCCATACTATGTA #rat_gr480318_libT5S1 20 1 sblock12735 TGAAAGGTGCCATACTATGT #rat_gr923138_libT5S1 20 1 sblock12735 TACGTAGTATAGTGCTTTTCAC #rat_gr753270_libT1S2 22 2 sblock12735 TACGTAGTATAGTGCTTTTCAC #rat_gr753270_libMirbase_rno-miR-471 22 1 sblock12735 TACGTAGTATAGTGCTTTTCA #rat_gr753269_libT1S2 21 1 sblock12735 TACGTAGTATAGTGCTTTTCA #rat_gr753269_libT5S1 21 1 sblock12735 TACGTAGTATAGTGCTTTT #rat_gr753268_libT5S1 19 1 sblock12735 --------------AGCAGTGCTTTACGTAGTATAGTGCTTTTCACATTACACAAAAAGTGAAAGGTGCCATACTATGTACAGGAAGGCTTA------------ mouseZ3p87 TGAAGAATATTGTGAGCAGTGCTTTACGTAGTATAGTGCTTTTCACATTAAACAAAAAGTGAAAGGTGCCATACTATGTATAGGAAGGCTTACCATGTTCCTCA ************************************ ***************************** *********** sblock12735 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054387 ENSRNOG00000036264 rno-mir-471 sblock12735 (((..(.((.((((((((((.(..((((((((.((......)).))))))))..).)))))))))).)).)..))).. 1.000 -30.90 # mouseZ3p87 .((.((((((.((((((....((.((((((((((.(((((((((((.((......)).))))))))))).)))))))))).))....)))))).)))))).)). 1.000 -42.10 # #sblock12735 chromosome:X:152840380:152840457:-1 Same_strand|Exonic_non-coding|ENSRNOT00000054387|ENSRNOG00000036264 ## ENSRNOG00000036264|miRNA|rno-mir-471|rno-mir-471 [Source:miRBase;Acc:MI0006150] ## {MIR: rno-mir-471} #mouseZ3p87 chromosome:X:64045751:64045854:-1 Same_strand|Boundary_non-coding|ENSMUST00000093596|ENSMUSG00000070104|miRNA|mmu-mir-471 [Source:miRBase;Acc:MI0002406] ## {MIR: mmu-mir-471} ========== sblock12736 (miRBase rno-mir-463) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12736: 0.003 randfold mouseZ6p87_sblock12736: 0.001 #forester mouseZ6p87_sblock12736: 0.764144 #identity: 87.18 sblock12736 ATAGACGCCAATTTGGGTAG #rat_gr209521_libT5S1 20 2 sblock12736 TGATAGACGCCAATTTGGGTAG #rat_gr954328_libT5S1 22 2 sblock12736 ATAGACGCCAATTTGGGTAGA #rat_gr209522_libT1S1 21 1 sblock12736 ATAGACGCCAATTTGGGTAGA #rat_gr209522_libT5S1 21 1 sblock12736 ATAGACGCCAATTTGGGTAG #rat_gr209521_libT1S1 20 1 sblock12736 GATAGACGCCAATTTGGGTAG #rat_gr519001_libT5S1 21 1 sblock12736 TGATAGACGCCAATTTGGGTAG #rat_gr954328_libMirbase_rno-miR-463 22 1 sblock12736 TGATAGACGCCAATTTGGGT #rat_gr954327_libT5S1 20 1 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT5S1 21 41 sblock12736 TACCTAATTTGTTGTCCATC #rat_gr750505_libT5S1 20 24 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT5S1 18 15 sblock12736 TACCTAATTTGTTGTCCATCATGT #rat_gr750509_libT5S1 24 9 sblock12736 TACCTAATTTGTTGTCCATCAT #rat_gr750507_libT5S1 22 7 sblock12736 TACCTAATTTGTTGTCCATCATG #rat_gr750508_libT5S1 23 5 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT1S1 21 4 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT1S2 21 4 sblock12736 TACCTAATTTGTTGTCCATC #rat_gr750505_libT1S1 20 4 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT1S1 18 3 sblock12736 TACCTAATTTGTTGTCCATCATGT #rat_gr750509_libT1S1 24 2 sblock12736 TACCTAATTTGTTGTCCATCAT #rat_gr750507_libT1S1 22 2 sblock12736 TACCTAATTTGTTGTCCATCAT #rat_gr750507_libT1S2 22 2 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT2S2 21 2 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT1S2 18 2 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT4S1 18 2 sblock12736 TACCTAATTTGTTGTCCATCATG #rat_gr750508_libT1S1 23 1 sblock12736 TACCTAATTTGTTGTCCATCATG #rat_gr750508_libT1S2 23 1 sblock12736 TACCTAATTTGTTGTCCATCATG #rat_gr750508_libT2S1 23 1 sblock12736 TACCTAATTTGTTGTCCATCAT #rat_gr750507_libT4S1 22 1 sblock12736 ACCTAATTTGTTGTCCATCA #rat_gr103658_libT5S1 20 1 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT2S1 21 1 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT4S1 21 1 sblock12736 TACCTAATTTGTTGTCCATCA #rat_gr750506_libT4S2 21 1 sblock12736 TACCTAATTTGTTGTCCATC #rat_gr750505_libT1S2 20 1 sblock12736 TACCTAATTTGTTGTCCATC #rat_gr750505_libT2S1 20 1 sblock12736 TACCTAATTTGTTGTCCAT #rat_gr750504_libT1S2 19 1 sblock12736 TACCTAATTTGTTGTCCAT #rat_gr750504_libT5S1 19 1 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT2S2 18 1 sblock12736 TACCTAATTTGTTGTCCA #rat_gr750503_libT3S2 18 1 sblock12736 -----------ACCCTGTTTTACCTAATTTGTTGTCCATCATGTAAAATTTAAGTGATGATAGACGCCAATTTGGGTAGAGGAAGGCTC---------------- mouseZ6p87 AGGTATGATGTACCCTGCTTTACCTAATTTGTTGTCCATCATGTAAAACATAAATGATGATAGACACCATATAAGGTAGAGGAAGGTTCACTATGTTCATCACCT ****** ****************************** *** *********** *** * ************ ** sblock12736 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000063080 ENSRNOG00000041327 rno-mir-463 sblock12736 ..(((.((((((((((.(((.((((((((((.((.....)).))))))...)))).))).))))))))))..)))... 1.000 -24.00 # mouseZ6p87 ((((((((.((..(((.((((((((.((.((.((((((((((...........))))))...)))).)).)).))))))))..)))...)).....)))).)))) 0.969 -28.80 # #sblock12736 chromosome:X:152844306:152844383:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063080|ENSRNOG00000041327 ## ENSRNOG00000041327|miRNA|rno-mir-463|rno-mir-463 [Source:miRBase;Acc:MI0006149] ## {MIR: rno-mir-463} #mouseZ6p87 chromosome:X:64052385:64052489:-1 Same_strand|Boundary_non-coding|ENSMUST00000093570|ENSMUSG00000070078|miRNA|mmu-mir-463 [Source:miRBase;Acc:MI0002398] ## {MIR: mmu-mir-463} ========== sblock12774 (miRBase rno-mir-532) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12774: 0.001 randfold humanZ6p87_sblock12774: 0.008 randfold mouseZ18p87_sblock12774: 0.001 #forester humanZ6p87_sblock12774: 0.8192 forester mouseZ18p87_sblock12774: 0.845268 #identity: 93.12 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT3S1 22 1702 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT3S2 22 1270 sblock12774 CATGCCTTGAGTGTAGGACTG #rat_gr312446_libT3S1 21 1129 sblock12774 CATGCCTTGAGTGTAGGAC #rat_gr312444_libT3S1 19 1128 sblock12774 CATGCCTTGAGTGTAGGACTG #rat_gr312446_libT3S2 21 1051 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT1S1 22 839 sblock12774 CATGCCTTGAGTGTAGGAC #rat_gr312444_libT3S2 19 817 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT5S2 22 668 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT2S1 22 605 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT4S2 22 602 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT2S2 22 520 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT1S2 22 483 sblock12774 CATGCCTTGAGTGTAGGACTGT #rat_gr312447_libT5S1 22 480 sblock12774