candidate miRBase miRNAs
miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK (62 loci)
rno-mir-540
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-540 5arm | 12 | 8 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| rno-mir-540 3arm | 42.500 | 37 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-540 5arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 |
| rno-mir-540 3arm | 0.001 | 0.002 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
sblock10440 (miRBase rno-mir-540) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-540 | 0.001 | no | no | 0.56/0.65 | 18/23/0.55 | 0.0 0.0 | 0.0 0.6 | 14 66 | 0 0 | 4 3 | 0 0 | 14 12 | 4 7 | 5arm 3arm | 1 2 | nd nd | 0.22 0.14 | 2 2 | 109 | 4 | 2 | 1 |
| Located in cluster 65: rno-mir-337, rno-mir-540, hsa-mir-665 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------GGUCAGA--------------------------------------- | 87 | miR-540 | |||
| seed | -----------------------------AAGGGUC---------------------------------------------------------------------------- | 22 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T3S2 | |||
| -----------------------------------------------------------------AGGTCAGAGGTCGATCCTG---------------------------- | 19 | 18 | 17 | - | 1 | |
| rno-miR-540 | -----------------------------------------------------------------AGGTCAGAGGTCGATCCTGG--------------------------- | 20 | 10 | 9 | - | - |
| ----------------------------CAAGGGTCACCCTCTGACTCTGT------------------------------------------------------------- | 23 | 9 | 5 | 1 | - | |
| -----------------------------------------------------------------AGGTCAGAGGTCGATCCT----------------------------- | 18 | 5 | 6 | - | - | |
| -----------------------------------------------------------------AGGTCAGAGGTCGATCCTGGGCC------------------------ | 23 | 4 | 4 | - | - | |
| -----------------------------------------------------------------AGGTCAGAGGTCGATCCTGGG-------------------------- | 21 | 6 | 1 | - | - | |
| -----------------------------------------------------------------AGGTCAGAGGTCGATCCTGGGC------------------------- | 22 | 2 | 3 | - | 1 | |
| ----------------------------CAAGGGTCACCCTCTGACTCTG-------------------------------------------------------------- | 22 | 1 | 1 | - | 1 | |
| ----------------------------CAAGGGTCACCCTCTGACTC---------------------------------------------------------------- | 20 | 1 | 1 | - | - | |
| ----------------------------CAAGGGTCACCCTCTGAC------------------------------------------------------------------ | 18 | 1 | 1 | - | - | |
| rat | --------------CCCTGGGGCTGGGCCAAGGGTCACCCTCTGACTCTGTGGCCAAGGGTAGACAGGTCAGAGGTCGATCCTGGGCCTACTCTGGGG-------------- | |||||
| mouse | CCTGGTGGGACATTCCCTGGGGCTGGGCCAAGGGTCACCCTCTGACTCTGTGGCCAAGGGTAGACAGGTCAGAGGTCGATCCTGGGCCTACTCTGGGGCTCCTCCCACTGGG | |||||
| ************************************************************************************ | ||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054607 ENSRNOG00000036499 rno-mir-540 | |||||
| rat | (((..(((.((((((.((((((..((((((((.((((.(((...)))..))))))))))))..)))))).)))))))))..))) | 1.000 -55.30 | ||||
| mouse | ((..((((((....(((..(((.((((((.((((((..((((((((.((((.(((...)))..))))))))))))..)))))).)))))))))..)))....))))))..)) | 1.000 -73.10 | ||||
| rat | chromosome:6:134177033:134177116:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054607|ENSRNOG00000036499 ## ENSRNOG00000036499|miRNA|rno-mir-540|rno-mir-540 [Source:miRBase;Acc:MI0003524] ## {MIR: rno-mir-540} |
| mouse | chromosome:12:110824267:110824378:1 | Same_strand|Boundary_non-coding|ENSMUST00000102167|ENSMUSG00000072900|miRNA|mmu-mir-540 [Source:miRBase;Acc:MI0003518] ## {MIR: mmu-mir-540} |
rno-mir-433
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-433 5arm | 81 | 64 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 |
| rno-mir-433 3arm | 403 | 309 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-433 5arm | 0.003 | 0.003 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0.000 | 0.000 |
| rno-mir-433 3arm | 0.013 | 0.013 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0 |
sblock10442 (miRBase rno-mir-433) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-433 | 0.003 | no | no | 0.43/0.63 | 18/24/0.51 | 0.0 0.0 | 1.1 1.6 | 137 594 | 0 0 | 5 7 | 0 0 | 11 8 | 7 17 | 5arm 3arm | 1 1 | nd nd | 0.14 0.17 | 1 1 | 865 | 8 | 2 | 2 |
| Located in cluster 66: rno-mir-431, rno-mir-433 |
| reads | miRBase family seed | |||||||||
| seed | ----------------------------------------------------------------UCAUGAU---------------------- | 654 | miR-433 | |||||||
| seed | ------------ACGGUGA-------------------------------------------------------------------------- | 147 | novel | |||||||
| seed | -----------------------------------------------------------------CAUGAUG--------------------- | 42 | novel | |||||||
| seed | ---------------------------------------------------------------AUCAUGA----------------------- | 14 | novel | |||||||
| seed | ------------------------------------------------------------------AUGAUGG-------------------- | 7 | novel | |||||||
| seed | -------------CGGUGAG------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------ATCATGATGGGCTCCTCG------------ | 18 | 110 | 70 | - | - | 1 | 1 | - | - | |
| ---------------------------------------------------------------ATCATGATGGGCTCCTCGG----------- | 19 | 108 | 52 | - | 1 | - | - | - | - | |
| rno-miR-433 | ---------------------------------------------------------------ATCATGATGGGCTCCTCGGTGT-------- | 22 | 58 | 72 | - | - | - | - | - | - |
| ---------------------------------------------------------------ATCATGATGGGCTCCTCGGT---------- | 20 | 67 | 57 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------ATCATGATGGGCTCCTCGGTG--------- | 21 | 27 | 22 | - | - | - | - | - | - | |
| -----------TACGGTGAGCCTGTCATTAT-------------------------------------------------------------- | 20 | 26 | 17 | - | - | 1 | - | - | - | |
| -----------TACGGTGAGCCTGTCATTATTC------------------------------------------------------------ | 22 | 22 | 22 | - | - | - | - | - | - | |
| -----------TACGGTGAGCCTGTCATTA--------------------------------------------------------------- | 19 | 20 | 20 | - | - | - | - | 1 | 1 | |
| -----------TACGGTGAGCCTGTCATT---------------------------------------------------------------- | 18 | 10 | 5 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGGTGT-------- | 21 | 4 | 10 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGGTG--------- | 20 | 7 | 3 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGGT---------- | 19 | 6 | 3 | - | - | - | - | - | - | |
| ---------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTTC------ | 24 | 2 | 3 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGG----------- | 18 | 3 | 3 | - | - | - | - | - | - | |
| --------------------------------------------------------------GATCATGATGGGCTCCTCG------------ | 19 | 4 | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GATCATGATGGGCTCCTCGG----------- | 20 | 2 | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------GATCATGATGGGCTCCTC------------- | 18 | 1 | 2 | - | - | - | - | - | - | |
| -----------------------------------------------------------------CATGATGGGCTCCTCGGTGT-------- | 20 | 1 | 2 | - | - | - | - | - | - | |
| -----------------------------------------------------------------CATGATGGGCTCCTCGGT---------- | 18 | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------GATCATGATGGGCTCCTCGGTG--------- | 22 | 2 | - | - | - | - | - | - | - | |
| -----------TACGGTGAGCCTGTCATTATT------------------------------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CATGATGGGCTCCTCGGTG--------- | 19 | 1 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGGTGTT------- | 22 | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------GATCATGATGGGCTCCTCGGTGT-------- | 23 | - | 2 | - | - | - | - | - | - | |
| ------------ACGGTGAGCCTGTCATTAT-------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ATCATGATGGGCTCCTCGGTGTT------- | 23 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCATGATGGGCTCCTCGGTGTTC------ | 23 | - | 1 | - | - | - | - | - | - | |
| rat | CCGGGGAGAAGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGTTCTCCAGG | |||||||||
| human | ---------AGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGT-------- | |||||||||
| mouse | ---------AGTACGGTGAGCCTGTCATTATTCAGAGAGGCTAGATCCTCTGTGTTGAGAAGGATCATGATGGGCTCCTCGGTGT-------- | |||||||||
| **************************************************************************** | ||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... | ENSRNOT00000054605 ENSRNOG00000036497 rno-mir-433 | |||||||||
| rat | ((..((((((...(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))...)))))).)) | 1.000 -38.20 | ||||||||
| human | ....(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).))).... | 0.430 -27.60 | ||||||||
| mouse | ....(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).))).... | 0.430 -27.60 | ||||||||
| rat | chromosome:6:134183216:134183308:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054605|ENSRNOG00000036497 ## ENSRNOG00000036497|miRNA|rno-mir-433|rno-mir-433 [Source:miRBase;Acc:MI0001724] ## {MIR: rno-mir-433} |
| human | chromosome:14:100417956:100418088:1 | Opposite_strand|Exonic_coding|ENST00000331067|ENSG00000185469|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:A6NKG5] ## Same_strand|Boundary_non-coding|ENST00000384837|ENSG00000207569|miRNA|hsa-mir-433 [Source:miRBase;Acc:MI0001723] ## {MIR: hsa-mir-433} |
| mouse | chromosome:12:110829908:110830040:1 | Opposite_strand|Exonic_coding|ENSMUST00000118502|ENSMUSG00000081425|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q7M732] ## Same_strand|Boundary_non-coding|ENSMUST00000093564|ENSMUSG00000070072|miRNA|mmu-mir-433 [Source:miRBase;Acc:MI0001525] ## {MIR: mmu-mir-433} |
rno-mir-127
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-127 5arm | 2070.500 | 1544 | 5 | 4 | 21.500 | 14 | 11 | 9 | 2 | 10.500 |
| rno-mir-127 3arm | 8167 | 6296 | 25 | 5 | 75 | 113 | 50 | 26 | 21 | 72 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-127 5arm | 0.069 | 0.067 | 0.000 | 0.000 | 0.001 | 0.001 | 0.001 | 0.000 | 0.000 | 0.001 |
| rno-mir-127 3arm | 0.271 | 0.275 | 0.001 | 0.000 | 0.004 | 0.009 | 0.004 | 0.001 | 0.001 | 0.005 |
sblock10443 (miRBase rno-mir-127) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-127 | 0.002 | no | no | 0.50/0.65 | 18/24/0.61 | 0.0 1.3 0.0 | 0.5 1.4 1.3 | 2 2773 13245 | 0 0 0 | 1 10 10 | 0 0 0 | 1 22 19 | 23 0 5 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.43 0.11 0.09 | 3 1 1 | 18555 | 10 | 3 | 1 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------------CGGAUCC------------------------------------------------ | 14231 | miR-127 | |||||||||
| seed | ------------------------------------------UGAAGCU---------------------------------------------------------------------------------- | 2169 | novel | |||||||||
| seed | --------------------------------------------AAGCUCA-------------------------------------------------------------------------------- | 1399 | novel | |||||||||
| seed | ---------------------------------------------------------------------------UCGGAUC------------------------------------------------- | 343 | novel | |||||||||
| seed | -----------------------------------------------------------------------------GGAUCCG----------------------------------------------- | 226 | novel | |||||||||
| seed | -------------------------------------------GAAGCUC--------------------------------------------------------------------------------- | 52 | novel | |||||||||
| seed | -----------------------------------------CUGAAGC----------------------------------------------------------------------------------- | 46 | novel | |||||||||
| seed | --------------------------------------------------------------------------AUCGGAU-------------------------------------------------- | 28 | novel | |||||||||
| seed | ----------------------------------------GCUGAAG------------------------------------------------------------------------------------ | 23 | novel | |||||||||
| seed | ------------------------------------------------------------------------------GAUCCGU---------------------------------------------- | 19 | novel | |||||||||
| seed | ---------------------------------------------AGCUCAG------------------------------------------------------------------------------- | 14 | novel | |||||||||
| seed | ---------------------UGAUCAC------------------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------------------------------------------------------------------AUCCGUC--------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------CCGUCUG------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------GAUCAUC------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTG------------------------------------- | 19 | 2500 | 1839 | 8 | 4 | 24 | 29 | 18 | 11 | 4 | 21 | |
| rno-miR-127 | ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTGGCT---------------------------------- | 22 | 1499 | 1321 | 4 | - | 18 | 20 | 7 | 3 | 5 | 16 |
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTGGC----------------------------------- | 21 | 1522 | 1213 | 6 | 1 | 14 | 23 | 12 | 1 | 5 | 12 | |
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTGG------------------------------------ | 20 | 1398 | 1073 | 5 | - | 7 | 24 | 7 | 6 | 4 | 14 | |
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTT-------------------------------------- | 18 | 880 | 583 | 2 | - | 9 | 14 | 5 | 5 | 2 | 9 | |
| -------------------------------------------GAAGCTCAGAGGGCTCTGATTC------------------------------------------------------------------ | 22 | 461 | 335 | 1 | 2 | - | 4 | 2 | 2 | 1 | - | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCTGATTC------------------------------------------------------------------ | 24 | 427 | 370 | 1 | 1 | 3 | 3 | - | - | 1 | - | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 22 | 214 | 203 | - | - | 3 | 2 | 1 | 1 | - | 2 | |
| -------------------------------------------GAAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 19 | 217 | 121 | 2 | - | 4 | - | 5 | - | - | 5 | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 21 | 208 | 133 | - | - | 1 | 2 | 1 | 2 | - | - | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCT----------------------------------------------------------------------- | 19 | 190 | 148 | 1 | 1 | 4 | 1 | - | 1 | - | 1 | |
| -----------------------------------------CTGAAGCTCAGAGGGCTC------------------------------------------------------------------------ | 18 | 102 | 91 | - | - | - | 1 | 2 | 2 | - | 1 | |
| -------------------------------------------GAAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 20 | 133 | 56 | - | - | 4 | - | - | - | - | 1 | |
| --------------------------------------------------------------------------ATCGGATCCGTCTGAGCTTGG------------------------------------ | 21 | 83 | 56 | - | - | 1 | 1 | - | - | - | - | |
| --------------------------------------------------------------------------ATCGGATCCGTCTGAGCTT-------------------------------------- | 19 | 40 | 28 | - | - | - | - | 1 | - | 1 | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTGGC----------------------------------- | 20 | 37 | 29 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTG------------------------------------- | 18 | 42 | 23 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------ATCGGATCCGTCTGAGCT--------------------------------------- | 18 | 32 | 24 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------ATCGGATCCGTCTGAGCTTG------------------------------------- | 20 | 30 | 23 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTGGCT---------------------------------- | 21 | 32 | 18 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTGG------------------------------------ | 19 | 24 | 18 | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCTG---------------------------------------------------------------------- | 20 | 16 | 18 | - | - | - | 1 | - | 1 | - | - | |
| -------------------------------------------GAAGCTCAGAGGGCTCTG---------------------------------------------------------------------- | 18 | 13 | 11 | - | - | 1 | - | - | - | - | 1 | |
| ------------------------------------------TGAAGCTCAGAGGGCTCTGATTC------------------------------------------------------------------ | 23 | 15 | 10 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------ATCGGATCCGTCTGAGCTTGGC----------------------------------- | 22 | 12 | 11 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTGGCTG--------------------------------- | 23 | 10 | 7 | - | - | 2 | 1 | - | - | - | - | |
| ------------------------------------------TGAAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 20 | 8 | 9 | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 22 | 7 | 9 | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCTCT----------------------------------------------------------------------- | 20 | 5 | 7 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------------GGATCCGTCTGAGCTTGGC----------------------------------- | 19 | 4 | 7 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 23 | 6 | 4 | - | - | - | - | - | - | - | - | |
| -------------------------------------------GAAGCTCAGAGGGCTCTGATT------------------------------------------------------------------- | 21 | 6 | 4 | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 23 | 6 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CATCGGATCCGTCTGAGCTTG------------------------------------- | 21 | 3 | 5 | - | - | - | - | - | - | - | - | |
| -----------------------------------------CTGAAGCTCAGAGGGCTCTGATT------------------------------------------------------------------- | 23 | 7 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CATCGGATCCGTCTGAGCTTGGC----------------------------------- | 23 | 3 | 5 | - | - | - | - | - | - | - | - | |
| -------------------------------------------GAAGCTCAGAGGGCTCTGATTCA----------------------------------------------------------------- | 23 | 5 | 1 | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------TGAAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 21 | 5 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCTC------------------------------------------------------------------------ | 19 | 5 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CATCGGATCCGTCTGAGCTT-------------------------------------- | 20 | 2 | 4 | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGATTC------------------------------------------------------------------ | 21 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCTC------------------------------------------------------------------------ | 20 | 3 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CATCGGATCCGTCTGAGCTTGG------------------------------------ | 22 | 3 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------TCGGATCCGTCTGAGCTTGGCTGG-------------------------------- | 24 | 2 | 2 | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 19 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGC-------------------------------------------------------------------------- | 18 | 1 | 2 | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGA--------------------------------------------------------------------- | 18 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------GGATCCGTCTGAGCTTGGCTG--------------------------------- | 21 | - | 3 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------GGATCCGTCTGAGCTTGGCT---------------------------------- | 20 | 3 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------TGAAGCTCAGAGGGCTCT----------------------------------------------------------------------- | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------GGATCCGTCTGAGCTTGG------------------------------------ | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCT------------------------------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------CATCGGATCCGTCTGAGCT--------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCTCT----------------------------------------------------------------------- | 21 | - | 2 | - | - | - | - | - | - | - | - | |
| --------------------TTGATCACTGTCTCCAGCCTG------------------------------------------------------------------------------------------ | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGATTCAGA--------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------TTGATCACTGTCTCCAGCCTGC----------------------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------------GATCCGTCTGAGCTTGGCT---------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------TCCGTCTGAGCTTGGCTGG-------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCTCTG---------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------AGATCATCGGATCCGTCTGAG----------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCTCTG---------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTGGCTG--------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------GCTGAAGCTCAGAGGGCT------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------------CGGATCCGTCTGAGCTTGGCTGG-------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGATTCAG---------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------AAGCTCAGAGGGCTCTGATTCA----------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------TGAAGCTCAGAGGGCTCTGATT------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------TGCTGAAGCTCAGAGGGCTCTGAT-------------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | -------------------TTTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCATCATC--------------- | |||||||||||
| human | -ACTCGTAAAAGGTCTCGCTGTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCATCATCTGCTTCCTTCGGGT- | |||||||||||
| mouse | GACTCGTAAAAGACGCCGCTTTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCATCATCTGCCTCCCTCGGGTT | |||||||||||
| * *********************************************************************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054604 ENSRNOG00000036496 rno-mir-127 | |||||||||||
| rat | ...(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..)))........ | 1.000 -39.80 | ||||||||||
| human | (((((...((((....((.(((((.(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))...)))))..))..))))))))) | 0.982 -49.60 | ||||||||||
| mouse | ((((((.....((.((.....((((.(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))...))))...)).))...)))))) | 0.969 -46.70 | ||||||||||
| rat | chromosome:6:134184312:134184408:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054604|ENSRNOG00000036496 ## ENSRNOG00000036496|miRNA|rno-mir-127|rno-mir-127 [Source:miRBase;Acc:MI0000899] ## {MIR: rno-mir-127} |
| human | chromosome:14:100419051:100419179:1 | Opposite_strand|Exonic_coding|ENST00000331067|ENSG00000185469|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:A6NKG5] ## Same_strand|Boundary_non-coding|ENST00000384876|ENSG00000207608|miRNA|hsa-mir-127 [Source:miRBase;Acc:MI0000472] ## {SimpF: rank = 1 1 FirstEF,oe = 0.95 0 CpG} ## {MIR: hsa-mir-127} |
| mouse | chromosome:12:110831023:110831153:1 | Opposite_strand|Exonic_coding|ENSMUST00000118502|ENSMUSG00000081425|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q7M732] ## Same_strand|Boundary_non-coding|ENSMUST00000093568|ENSMUSG00000070076|miRNA|mmu-mir-127 [Source:miRBase;Acc:MI0000154] ## {MIR: mmu-mir-127} |
rno-mir-329
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-329 5arm | 345.500 | 321 | 0 | 0 | 6 | 6 | 4 | 1 | 3 | 14 |
| rno-mir-329 3arm | 3534 | 2815 | 17 | 10 | 39 | 42 | 21 | 25 | 18 | 37 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-329 5arm | 0.011 | 0.014 | 0 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 |
| rno-mir-329 3arm | 0.117 | 0.123 | 0.001 | 0.001 | 0.002 | 0.003 | 0.002 | 0.001 | 0.001 | 0.002 |
sblock10494 (miRBase rno-mir-329) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-329 | 0.001 | no | no | 0.38/0.53 | 18/25/0.58 | 0.0 0.0 | 3.2 1.3 | 584 6131 | 0 0 | 8 10 | 0 0 | 22 15 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.21 0.14 | 3 2 | 7259 | 10 | 2 | 2 |
| Located in cluster 69: rno-mir-380, rno-mir-323, rno-mir-758, rno-mir-329 |
| Member of family miR-329 (seed ACACACC): hsa-mir-362, rno-mir-329 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------ACACACC----------------------------- | 6389 | miR-329 | |||||||||
| seed | -----------------------GAGGUUU------------------------------------------------------------------- | 654 | novel | |||||||||
| seed | --------------------------------------------------------------CACACCC---------------------------- | 103 | novel | |||||||||
| seed | ------------------------------------------------------------AACACAC------------------------------ | 58 | novel | |||||||||
| seed | ------------------------AGGUUUU------------------------------------------------------------------ | 44 | novel | |||||||||
| seed | ---------------------------------------------------------------ACACCCA--------------------------- | 4 | novel | |||||||||
| seed | -------------------------GGUUUUC----------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ----------------------------------------------------------GAAACAC-------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------------AAACACA------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------CACCCAG-------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------AACACACCCAGCTAACCTTTT---------------- | 21 | 981 | 803 | 7 | 4 | 10 | 11 | 5 | 11 | 3 | 9 | |
| ------------------------------------------------------------AACACACCCAGCTAACCTT------------------ | 19 | 761 | 622 | 3 | 3 | 7 | 7 | 1 | 5 | 4 | 13 | |
| ------------------------------------------------------------AACACACCCAGCTAACCT------------------- | 18 | 709 | 564 | 4 | - | 6 | 9 | 7 | 2 | 4 | 6 | |
| ------------------------------------------------------------AACACACCCAGCTAACCTTT----------------- | 20 | 459 | 386 | 1 | 2 | 9 | 7 | 5 | 3 | 3 | 1 | |
| rno-miR-329 | ------------------------------------------------------------AACACACCCAGCTAACCTTTTT--------------- | 22 | 501 | 345 | 1 | 1 | 5 | 7 | 3 | 3 | 2 | 7 |
| ----------------------AGAGGTTTTCTGGGTCTCTGTTTC--------------------------------------------------- | 24 | 85 | 84 | - | - | 2 | 2 | 1 | 1 | 2 | 5 | |
| ----------------------AGAGGTTTTCTGGGTCTCT-------------------------------------------------------- | 19 | 69 | 56 | - | - | 3 | 1 | 1 | - | 1 | 4 | |
| ----------------------AGAGGTTTTCTGGGTCTCTGT------------------------------------------------------ | 21 | 50 | 65 | - | - | 1 | 1 | - | - | - | 2 | |
| ----------------------AGAGGTTTTCTGGGTCTC--------------------------------------------------------- | 18 | 58 | 51 | - | - | - | 1 | 1 | - | - | 1 | |
| ----------------------AGAGGTTTTCTGGGTCTCTG------------------------------------------------------- | 20 | 36 | 30 | - | - | - | 1 | 1 | - | - | 2 | |
| ------------------------------------------------------------AACACACCCAGCTAACCTTTTTT-------------- | 23 | 24 | 18 | - | - | 1 | - | - | 1 | 2 | - | |
| -------------------------------------------------------------ACACACCCAGCTAACCTTTT---------------- | 20 | 23 | 15 | - | - | - | - | - | - | - | - | |
| ----------------------AGAGGTTTTCTGGGTCTCTGTT----------------------------------------------------- | 22 | 18 | 13 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AAACACACCCAGCTAACCTT------------------ | 20 | 15 | 10 | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------ACACACCCAGCTAACCTT------------------ | 18 | 12 | 12 | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------ACACACCCAGCTAACCTTT----------------- | 19 | 9 | 13 | - | - | - | - | - | - | - | 1 | |
| -----------------------GAGGTTTTCTGGGTCTCTGTTTC--------------------------------------------------- | 23 | 9 | 11 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------ACACACCCAGCTAACCTTTTT--------------- | 21 | 11 | 5 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AAACACACCCAGCTAACC-------------------- | 18 | 6 | 8 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AAACACACCCAGCTAACCT------------------- | 19 | 10 | 3 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------AACACACCCAGCTAACCTTTTTTT------------- | 24 | 3 | 7 | - | - | - | - | - | - | - | - | |
| -----------------------GAGGTTTTCTGGGTCTCTG------------------------------------------------------- | 19 | 6 | 3 | - | - | - | - | - | - | - | - | |
| -----------------------GAGGTTTTCTGGGTCTCTGTT----------------------------------------------------- | 21 | 5 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------GAGGTTTTCTGGGTCTCTGT------------------------------------------------------ | 20 | 3 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------GAGGTTTTCTGGGTCTCT-------------------------------------------------------- | 18 | 4 | - | - | - | - | - | - | - | - | - | |
| ----------------------AGAGGTTTTCTGGGTCTCTGTTT---------------------------------------------------- | 23 | 1 | 3 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CACACCCAGCTAACCTTTT---------------- | 19 | 3 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AAACACACCCAGCTAACCTTTT---------------- | 22 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------AAACACACCCAGCTAACCTTT----------------- | 21 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------------AGGTTTTCTGGGTCTCTGTTTC--------------------------------------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------AGGTTTTCTGGGTCTCTG------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ACACCCAGCTAACCTTTT---------------- | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------------------------TGAAACACACCCAGCTAACCT------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------GAAACACACCCAGCTAACCTT------------------ | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------AGAGGTTTTCTGGGTCTCTGTTTCT-------------------------------------------------- | 25 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------TGAAACACACCCAGCTAAC--------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CACACCCAGCTAACCTTT----------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------AACACACCCAGCTAACCTTTTTTTC------------ | 25 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------ACACACCCAGCTAACCTTTTTT-------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | TGTTCGCTTCTGGTACCGGAAGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTTTTCAGTATCAAATCC | |||||||||||
| human | --------------------AGAGAGGTTTTCTGGGTTTCTGTTTCTTTAATGAGGACGAAACACACCTGGTTAACCTCTTT--------------- | |||||||||||
| mouse | --------------------AGAGAGGTTTTCTGGGTCTCTGTTTCTTTGATGAGAATGAAACACACCCAGCTAACCTTTTT--------------- | |||||||||||
| ***************** *********** ***** * ********** * ****** *** | ||||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... | ENSRNOT00000053610 ENSRNOG00000035487 rno-mir-329 | |||||||||||
| rat | ..........((((((.((((((((((((..((((((...(((((((((.....))).)))))).))))))..)))))))))))).))))))..... | 1.000 -36.50 | ||||||||||
| human | (((((((((..((((((...((((((.((......)).)))))).))))))..))))))))) | 1.000 -23.30 | ||||||||||
| mouse | (((((((((..((((((...(((((((((.....))).)))))).))))))..))))))))) | 1.000 -23.80 | ||||||||||
| rat | chromosome:6:134392666:134392762:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053610|ENSRNOG00000035487 ## ENSRNOG00000035487|miRNA|rno-mir-329|rno-mir-329 [Source:miRBase;Acc:MI0000604] ## {MIR: rno-mir-329} |
| human | chromosome:14:100562844:100562980:1 | Same_strand|Boundary_non-coding|ENST00000385028|ENSG00000207761|miRNA|hsa-mir-329-1 [Source:miRBase;Acc:MI0001725] ## {MIR: hsa-mir-329-1} |
| mouse | chromosome:12:110951671:110951807:1 | Same_strand|Boundary_non-coding|ENSMUST00000083643|ENSMUSG00000065577|miRNA|mmu-mir-329 [Source:miRBase;Acc:MI0000605] ## {MIR: mmu-mir-329} |
rno-mir-107
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-107 5arm | 167 | 112 | 29 | 58 | 54 | 29 | 28 | 66 | 118 | 124 |
| rno-mir-107 3arm | 42467.667 | 32755.333 | 9447.333 | 10367.667 | 12335.667 | 9308.333 | 9702.333 | 14731.333 | 28961 | 26882.667 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-107 5arm | 0.006 | 0.005 | 0.002 | 0.003 | 0.003 | 0.002 | 0.002 | 0.003 | 0.008 | 0.008 |
| rno-mir-107 3arm | 1.412 | 1.430 | 0.512 | 0.615 | 0.601 | 0.705 | 0.755 | 0.775 | 1.909 | 1.789 |
sblock1051 (miRBase rno-mir-107) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-107 | 0.001 | no | no | 0.33/0.56 | 18/24/0.39 | 0.0 0.0 0.0 | 0.3 0.0 0.8 | 405 2 240212 | 0 0 0 | 10 1 10 | 0 0 0 | 14 37 16 | 5 -16 5 | 5arm 5arm_loop_3arm 3arm | 1 1 3 | nd nd nd | 0.14 0.25 0.06 | 1 5 1 | 451955 | 10 | 1 | 1 |
| Member of family miR-103/107 (seed GCAGCAU): rno-mir-107, rno-mir-103, rno-mir-103, block906578_cand, block1270680_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------------------GCAGCAU---------------------------------- | 449974 | miR-103/107 | |||||||||
| seed | -------------------------------GCUUCUU----------------------------------------------------------------------- | 725 | novel | |||||||||
| seed | ----------------------------------------------------------------------AGCAUUG-------------------------------- | 630 | novel | |||||||||
| seed | ---------------------------------------------------------------------CAGCAUU--------------------------------- | 356 | novel | |||||||||
| seed | -------------------------------------------------------------------AGCAGCA----------------------------------- | 196 | miR-15b/16/195/322/497 | |||||||||
| seed | ------------------------------AGCUUCU------------------------------------------------------------------------ | 58 | novel | |||||||||
| seed | ------------------------------------------------------------------------CAUUGUA------------------------------ | 13 | novel | |||||||||
| seed | ------------------------------------------------------GGCAUGG------------------------------------------------ | 2 | novel | |||||||||
| seed | ------------------------------------------------------------------AAGCAGC------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------AGCAGCATTGTACAGGGCT----------------------- | 19 | 31371 | 26773 | 7626 | 6706 | 11036 | 8166 | 7387 | 8117 | 17137 | 15017 | |
| -------------------------------------------------------------------AGCAGCATTGTACAGGGC------------------------ | 18 | 35841 | 25971 | 6106 | 6667 | 9819 | 7152 | 5564 | 8900 | 14561 | 16355 | |
| -------------------------------------------------------------------AGCAGCATTGTACAGGGCTA---------------------- | 20 | 19397 | 15036 | 4396 | 4141 | 6234 | 4459 | 3960 | 5870 | 11717 | 9574 | |
| -------------------------------------------------------------------AGCAGCATTGTACAGGGCTATC-------------------- | 22 | 6227 | 4864 | 2259 | 2231 | 1491 | 1245 | 1870 | 3340 | 6077 | 5945 | |
| rno-miR-107 | -------------------------------------------------------------------AGCAGCATTGTACAGGGCTATCA------------------- | 23 | 6113 | 4217 | 690 | 1717 | 1262 | 985 | 1795 | 3177 | 7633 | 6570 |
| -------------------------------------------------------------------AGCAGCATTGTACAGGGCTAT--------------------- | 21 | 3469 | 2977 | 1313 | 1664 | 1535 | 1372 | 1148 | 1669 | 2125 | 1927 | |
| ---------------------------------------------------------------------CAGCATTGTACAGGGCTA---------------------- | 18 | 117 | 116 | 13 | 12 | 48 | 31 | 17 | 28 | 63 | 72 | |
| ------------------------------AGCTTCTTTACAGTGTTGC------------------------------------------------------------ | 19 | 73 | 54 | 16 | 39 | 33 | 11 | 22 | 37 | 58 | 43 | |
| --------------------------------------------------------------------GCAGCATTGTACAGGGCTA---------------------- | 19 | 46 | 31 | 12 | 15 | 27 | 8 | 8 | 13 | 37 | 34 | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGGCT----------------------- | 20 | 27 | 15 | 4 | 1 | 13 | 11 | 1 | 6 | 15 | 13 | |
| ------------------------------AGCTTCTTTACAGTGTTGCCT---------------------------------------------------------- | 21 | 18 | 23 | 4 | 2 | 3 | 7 | - | 7 | 19 | 21 | |
| ---------------------------------------------------------------------CAGCATTGTACAGGGCTAT--------------------- | 19 | 12 | 17 | 3 | 3 | 3 | 5 | 7 | 4 | 8 | 9 | |
| ------------------------------AGCTTCTTTACAGTGTTGCC----------------------------------------------------------- | 20 | 18 | 11 | 3 | 4 | 5 | 3 | - | 3 | 3 | 16 | |
| ------------------------------AGCTTCTTTACAGTGTTGCCTT--------------------------------------------------------- | 22 | 23 | 6 | - | 1 | 2 | 5 | 2 | 7 | 8 | 11 | |
| ------------------------------AGCTTCTTTACAGTGTTGCCTTG-------------------------------------------------------- | 23 | 19 | 4 | 1 | 2 | 6 | - | - | 5 | 7 | 12 | |
| ------------------------------AGCTTCTTTACAGTGTTG------------------------------------------------------------- | 18 | 10 | 9 | 1 | 3 | 1 | - | - | 5 | 13 | 6 | |
| --------------------------------------------------------------------GCAGCATTGTACAGGGCT----------------------- | 18 | 11 | 5 | 2 | 4 | 9 | 1 | 1 | 1 | 4 | 1 | |
| --------------------------------------------------------------------GCAGCATTGTACAGGGCTATCA------------------- | 22 | 5 | 5 | - | 2 | - | 4 | 3 | 6 | 8 | 6 | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGGC------------------------ | 19 | 6 | 5 | 2 | 4 | 5 | 2 | 1 | 1 | 2 | 7 | |
| --------------------------------------------------------------------GCAGCATTGTACAGGGCTATC-------------------- | 21 | 10 | 6 | 2 | 3 | 1 | - | - | 3 | 5 | 4 | |
| -----------------------------AAGCTTCTTTACAGTGTTG------------------------------------------------------------- | 19 | 1 | 2 | 2 | 3 | 1 | 2 | 3 | 2 | 4 | 4 | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGGCTA---------------------- | 21 | 3 | 3 | - | 2 | 1 | 2 | 1 | 2 | 7 | 3 | |
| ---------------------------------------------------------------------CAGCATTGTACAGGGCTATCA------------------- | 21 | 1 | 4 | - | 2 | 2 | - | - | - | 4 | 9 | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGG------------------------- | 18 | 8 | 1 | 1 | 3 | - | 1 | 2 | 1 | 3 | 2 | |
| ---------------------------------------------------------------------CAGCATTGTACAGGGCTATC-------------------- | 20 | 3 | 3 | 3 | - | 2 | 3 | 1 | - | 3 | 2 | |
| --------------------------------------------------------------------GCAGCATTGTACAGGGCTAT--------------------- | 20 | 2 | - | 2 | - | - | 1 | - | 1 | 5 | 2 | |
| -----------------------------AAGCTTCTTTACAGTGTTGCCT---------------------------------------------------------- | 22 | 2 | - | 1 | 3 | 1 | - | 1 | - | 3 | - | |
| -------------------------------------------------------------------AGCAGCATTGTACAGGGCTATCAA------------------ | 24 | 1 | 2 | - | 2 | 1 | - | - | - | 1 | 4 | |
| -----------------------------------------------------------------------GCATTGTACAGGGCTATC-------------------- | 18 | 3 | - | - | 3 | - | 1 | - | - | - | 2 | |
| -----------------------------AAGCTTCTTTACAGTGTT-------------------------------------------------------------- | 18 | - | 2 | - | 1 | - | - | - | - | 2 | 4 | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGGCTATC-------------------- | 23 | 1 | 2 | - | - | - | - | 1 | 1 | 1 | 1 | |
| -----------------------------AAGCTTCTTTACAGTGTTGCCTT--------------------------------------------------------- | 23 | 1 | - | - | - | - | 1 | - | - | 1 | 3 | |
| -----------------------------AAGCTTCTTTACAGTGTTGCC----------------------------------------------------------- | 21 | - | 1 | 1 | - | 2 | - | - | - | - | 2 | |
| -----------------------------------------------------------------------GCATTGTACAGGGCTATCA------------------- | 19 | - | 2 | - | - | - | - | - | - | 1 | 1 | |
| -----------------------------------------------------TGGCATGGAGTTCAAGCAGC------------------------------------ | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------AAGCAGCATTGTACAGGGCTAT--------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------AAGCTTCTTTACAGTGTTGC------------------------------------------------------------ | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------CAAGCAGCATTGTACAGGG------------------------- | 19 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | ----------------TTCTCTCTGCTTTAAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGC------ | |||||||||||
| human | -----------------TCTCTCTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGA-------- | |||||||||||
| mouse | GCAATACTCGATATTTTTCTCTGTGCTTTCAGCTTCTTTACAGTGTTGCCTTGTGGCATGGAGTTCAAGCAGCATTGTACAGGGCTATCAAAGCACAGAGAGCTCGCGA | |||||||||||
| ***** ****** *********************************************************************** | ||||||||||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000025736 ENSRNOG00000018944 NP_001099843.1 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053762 ENSRNOG00000035639 rno-mir-107 | |||||||||||
| rat | ((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))). | 1.000 -35.10 | ||||||||||
| human | (((((.((((((.(((.(((.((((((((((.((((.(((.....))))))))))))))))).))))))...)))))).))))) | 0.999 -34.00 | ||||||||||
| mouse | .......(((......(((((((((((((.(((.(((.((((((((((.((((.(((.....))))))))))))))))).))))))...)))))))))))))....))) | 0.931 -42.40 | ||||||||||
| rat | chromosome:1:238806835:238806921:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053762|ENSRNOG00000035639 ## Same_strand|Intronic_coding|ENSRNOT00000025736|ENSRNOG00000018944 ## Same_strand|Boundary_non-coding|ENSRNOT00000053762|ENSRNOG00000035639 ## ENSRNOG00000035639|miRNA|rno-mir-107|rno-mir-107 [Source:miRBase;Acc:MI0000890] ## ENSRNOG00000018944|protein_coding|NP_001099843.1|pantothenate kinase 1 [Source:RefSeq_peptide;Acc:NP_001099843] ## {MIR: rno-mir-107} |
| human | chromosome:10:91342482:91342565:-1 | Same_strand|Intronic_coding|ENST00000371774|ENSG00000152782|protein_coding|Pantothenate kinase 1 (EC 2.7.1.33)(Pantothenic acid kinase 1)(hPanK1)(hPanK) [Source:UniProtKB/Swiss-Prot;Acc:Q8TE04] ## Same_strand|Exonic_non-coding|ENST00000362127|ENSG00000198997|miRNA|hsa-mir-107 [Source:miRBase;Acc:MI0000114] ## {MIR: hsa-mir-107} |
| mouse | chromosome:19:34895171:34895279:-1 | Same_strand|Intronic_coding|ENSMUST00000112460|ENSMUSG00000033610|protein_coding|pantothenate kinase 1 Gene [Source:MGI Symbol;Acc:MGI:1922985] ## Same_strand|Boundary_non-coding|ENSMUST00000083660|ENSMUSG00000065594|miRNA|mmu-mir-107 [Source:miRBase;Acc:MI0000684] ## {MIR: mmu-mir-107} |
rno-mir-382
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-382 5arm | 5529 | 4589 | 15 | 12 | 49 | 57 | 17 | 22 | 39 | 94 |
| rno-mir-382 3arm | 1177 | 786 | 2 | 1 | 3 | 9 | 15 | 8 | 6 | 10 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-382 5arm | 0.184 | 0.200 | 0.001 | 0.001 | 0.002 | 0.004 | 0.001 | 0.001 | 0.003 | 0.006 |
| rno-mir-382 3arm | 0.039 | 0.034 | 0.000 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.000 | 0.001 |
sblock10512 (miRBase rno-mir-382) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-382 | 0.001 | no | no | 0.33/0.52 | 18/24/0.48 | 0.0 0.0 | 1.4 0.9 | 8965 1423 | 0 0 | 10 10 | 0 0 | 12 10 | 0 4 | 5arm_loop 3arm | 1 1 | nd nd | 0.14 0.18 | 2 2 | 12440 | 10 | 3 | 1 |
| Located in cluster 74: rno-mir-382, rno-mir-134, mmu-mir-668, rno-mir-485 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------AAGUUGU----------------------------------------------------------------------------- | 10011 | miR-382 | |||||||||
| seed | ---------------------------------------------------------------------AUCAUUC----------------------------------------- | 1906 | miR-382* | |||||||||
| seed | ----------------------------------AGUUGUU---------------------------------------------------------------------------- | 221 | novel | |||||||||
| seed | -----------------------------------GUUGUUC--------------------------------------------------------------------------- | 189 | novel | |||||||||
| seed | ----------------------------------------------------------------------UCAUUCA---------------------------------------- | 93 | novel | |||||||||
| seed | -------------------------------------------------------------------GAAUCAU------------------------------------------- | 14 | novel | |||||||||
| seed | --------------------------------------------------------------------AAUCAUU------------------------------------------ | 2 | novel | |||||||||
| seed | -----------------------------------------------------------------------CAUUCAC--------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------CGUGGUG--------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------------------AUUCACG-------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------GAAGUUG------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------GAAGTTGTTCGTGGTGGAT------------------------------------------------------------------ | 19 | 1902 | 1354 | 4 | 2 | 20 | 13 | 2 | 11 | 13 | 23 | |
| --------------------------------GAAGTTGTTCGTGGTGGA------------------------------------------------------------------- | 18 | 1326 | 1132 | 7 | 2 | 10 | 12 | 5 | 5 | 8 | 30 | |
| --------------------------------GAAGTTGTTCGTGGTGGATTCGC-------------------------------------------------------------- | 23 | 890 | 943 | 2 | 1 | 7 | 15 | 3 | 2 | 4 | 19 | |
| --------------------------------GAAGTTGTTCGTGGTGGATTC---------------------------------------------------------------- | 21 | 810 | 608 | - | 1 | 5 | 9 | 5 | 1 | 9 | 12 | |
| --------------------------------------------------------------------AATCATTCACGGACAACACTTT--------------------------- | 22 | 474 | 343 | 1 | - | - | 3 | 5 | 2 | - | 3 | |
| rno-miR-382 | --------------------------------GAAGTTGTTCGTGGTGGATTCG--------------------------------------------------------------- | 22 | 205 | 176 | 1 | 2 | 3 | 3 | 1 | - | 1 | 4 |
| --------------------------------GAAGTTGTTCGTGGTGGATT----------------------------------------------------------------- | 20 | 187 | 190 | - | 2 | 1 | 4 | - | 2 | - | 1 | |
| --------------------------------------------------------------------AATCATTCACGGACAACAC------------------------------ | 19 | 220 | 119 | 1 | - | 3 | 3 | 4 | - | - | 3 | |
| --------------------------------------------------------------------AATCATTCACGGACAACACT----------------------------- | 20 | 206 | 130 | - | 1 | - | - | 3 | 2 | 5 | 3 | |
| rno-miR-382* | --------------------------------------------------------------------AATCATTCACGGACAACACTT---------------------------- | 21 | 180 | 126 | - | - | - | 2 | 2 | 3 | 1 | - |
| ----------------------------------AGTTGTTCGTGGTGGATTC---------------------------------------------------------------- | 19 | 53 | 48 | 1 | 1 | 2 | - | - | 1 | - | 2 | |
| ---------------------------------AAGTTGTTCGTGGTGGATTCGC-------------------------------------------------------------- | 22 | 32 | 41 | - | - | - | - | - | - | - | - | |
| ---------------------------------AAGTTGTTCGTGGTGGAT------------------------------------------------------------------ | 18 | 31 | 27 | - | 1 | - | 1 | - | - | 1 | - | |
| ---------------------------------AAGTTGTTCGTGGTGGATTC---------------------------------------------------------------- | 20 | 26 | 21 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------ATCATTCACGGACAACACTTT--------------------------- | 21 | 24 | 21 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------AATCATTCACGGACAACA------------------------------- | 18 | 22 | 15 | - | - | - | 1 | - | - | - | - | |
| ----------------------------------AGTTGTTCGTGGTGGATTCGC-------------------------------------------------------------- | 21 | 20 | 15 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGTTGTTCGTGGTGGATTCGCT------------------------------------------------------------- | 22 | 14 | 11 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------AAGTTGTTCGTGGTGGATTCG--------------------------------------------------------------- | 21 | 13 | 11 | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------------------------------------------AATCATTCACGGACAACACTTTT-------------------------- | 23 | 13 | 5 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------ATCATTCACGGACAACACT----------------------------- | 19 | 11 | 5 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------ATCATTCACGGACAACAC------------------------------ | 18 | 9 | 6 | - | - | - | - | - | - | - | - | |
| ---------------------------------AAGTTGTTCGTGGTGGATT----------------------------------------------------------------- | 19 | 8 | 4 | - | - | 1 | - | - | - | - | 1 | |
| ----------------------------------AGTTGTTCGTGGTGGATT----------------------------------------------------------------- | 18 | 9 | 2 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------ATCATTCACGGACAACACTTTT-------------------------- | 22 | 3 | 5 | - | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------------ATCATTCACGGACAACACTT---------------------------- | 20 | 6 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGTTGTTCGTGGTGGATTCG--------------------------------------------------------------- | 20 | 2 | 3 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------CGAATCATTCACGGACAACACT----------------------------- | 22 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CGAATCATTCACGGACAACAC------------------------------ | 21 | 1 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAATCATTCACGGACAAC-------------------------------- | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CGAATCATTCACGGACAAC-------------------------------- | 19 | - | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CGAATCATTCACGGACAACACTT---------------------------- | 23 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------TCGTGGTGGATTCGCTTTAC--------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------------TCATTCACGGACAACACTTT--------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------CGAATCATTCACGGACAA--------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | - | |
| -------------------------------AGAAGTTGTTCGTGGTGGA------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------GAAGTTGTTCGTGGTGGATTCGCT------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------CATTCACGGACAACACTTT--------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------AATCATTCACGGACAACACTTTTT------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------AGTTGTTCGTGGTGGATTCGCTT------------------------------------------------------------ | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | --------------------GGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTGTGACGAATCATTCACGGACAACACTTTTTTCAGTACC----------------- | |||||||||||
| human | --------------------------------GAAGTTGTTCGTGGTGGATTCGCTTTACTTATGACGAATCATTCACGGACAACACTT---------------------------- | |||||||||||
| mouse | TCTTGTCTCTGCTTTTCTGTGGTACTTGAAGAGAAGTTGTTCGTGGTGGATTCGCTTTACTTGTGACGAATCATTCACGGACAACACTTTTTTCAGTACCAAATGCTACCTCTAAGG | |||||||||||
| ****************************** ************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053748 ENSRNOG00000035625 rno-mir-382 | |||||||||||
| rat | ((((((.(((((((.(((((((((((..(((((((.........).))))))..)))))))))))..))))))))))))) | 1.000 -34.50 | ||||||||||
| human | ...(((((((((((..((((((.((.......))))))))..))))))))))).... | 1.000 -22.30 | ||||||||||
| mouse | .((((.....((.......((((((.((((((((.(((((((((((..((((((..(((....)))))))))..)))))))))))..))))))))))))))...))......)))). | 0.855 -38.60 | ||||||||||
| rat | chromosome:6:134415263:134415342:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053748|ENSRNOG00000035625 ## ENSRNOG00000035625|miRNA|rno-mir-382|rno-mir-382 [Source:miRBase;Acc:MI0003548] ## {MIR: rno-mir-382} |
| human | chromosome:14:100590374:100590493:1 | Same_strand|Boundary_non-coding|ENST00000385009|ENSG00000207742|miRNA|hsa-mir-382 [Source:miRBase;Acc:MI0000790] ## {MIR: hsa-mir-382} |
| mouse | chromosome:12:110971959:110972075:1 | Same_strand|Boundary_non-coding|ENSMUST00000083494|ENSMUSG00000065428|miRNA|mmu-mir-382 [Source:miRBase;Acc:MI0000799] ## {MIR: mmu-mir-382} |
rno-mir-134
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-134 5arm | 1220 | 438 | 8 | 5 | 40 | 37 | 31 | 15 | 60 | 63 |
| rno-mir-134 3arm | 112 | 46 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-134 5arm | 0.041 | 0.019 | 0.000 | 0.000 | 0.002 | 0.003 | 0.002 | 0.001 | 0.004 | 0.004 |
| rno-mir-134 3arm | 0.004 | 0.002 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 |
sblock10513 (miRBase rno-mir-134) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-134 | 0.001 | no | no | 0.50/0.67 | 18/24/0.54 | 0.0 0.0 | 0.8 1.1 | 1257 111 | 0 0 | 10 4 | 0 0 | 7 4 | 6 7 | 5arm 3arm | 1 1 | nd nd | 0.15 0.22 | 1 2 | 2078 | 10 | 2 | 3 |
| Located in cluster 74: rno-mir-382, rno-mir-134, mmu-mir-668, rno-mir-485 |
| reads | miRBase family seed | |||||||||||
| seed | --------GUGACUG--------------------------------------------------------------- | 1846 | miR-134 | |||||||||
| seed | -----------------------------------------------UGUGGGC------------------------ | 132 | novel | |||||||||
| seed | ---------UGACUGG-------------------------------------------------------------- | 45 | novel | |||||||||
| seed | -------UGUGACU---------------------------------------------------------------- | 26 | novel | |||||||||
| seed | ------------------------------------------------GUGGGCC----------------------- | 18 | novel | |||||||||
| seed | ----------------------------------------------CUGUGGG------------------------- | 8 | novel | |||||||||
| seed | -------------------------------------------------UGGGCCA---------------------- | 2 | novel | |||||||||
| seed | -----------------------------------------------------CCACCUA------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------TGTGACTGGTTGACCAGAG---------------------------------------------------- | 19 | 385 | 166 | 5 | 1 | 15 | 6 | 7 | 5 | 14 | 8 | |
| -------TGTGACTGGTTGACCAGAGG--------------------------------------------------- | 20 | 273 | 84 | 1 | 1 | 10 | 14 | 15 | 5 | 20 | 12 | |
| -------TGTGACTGGTTGACCAGAGGG-------------------------------------------------- | 21 | 254 | 63 | 1 | 2 | 6 | 8 | 5 | 2 | 12 | 16 | |
| -------TGTGACTGGTTGACCAGA----------------------------------------------------- | 18 | 179 | 53 | 1 | - | 6 | 7 | 2 | 2 | 8 | 6 | |
| rno-miR-134 | -------TGTGACTGGTTGACCAGAGGGG------------------------------------------------- | 22 | 75 | 34 | - | 1 | 3 | 2 | - | 1 | 6 | 17 |
| ----------------------------------------------CTGTGGGCCACCTAGTCACC------------ | 20 | 31 | 10 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------CTGTGGGCCACCTAGTCACCA----------- | 21 | 17 | 11 | - | - | 1 | - | 1 | - | - | - | |
| ----------------------------------------------CTGTGGGCCACCTAGTCACCAAC--------- | 23 | 20 | 8 | - | - | - | - | - | - | - | - | |
| -------TGTGACTGGTTGACCAGAGGGGC------------------------------------------------ | 23 | 17 | 8 | - | - | - | - | - | - | - | 2 | |
| --------GTGACTGGTTGACCAGAGG--------------------------------------------------- | 19 | 11 | 4 | - | - | - | - | 2 | - | - | 1 | |
| ----------------------------------------------CTGTGGGCCACCTAGTCAC------------- | 19 | 12 | 4 | - | - | - | - | - | - | - | - | |
| --------GTGACTGGTTGACCAGAGGG-------------------------------------------------- | 20 | 10 | 5 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------CTGTGGGCCACCTAGTCA-------------- | 18 | 10 | 2 | - | - | - | - | 1 | - | - | - | |
| --------GTGACTGGTTGACCAGAG---------------------------------------------------- | 18 | 6 | 4 | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAGAG---------------------------------------------------- | 20 | 6 | 3 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TGTGGGCCACCTAGTCACC------------ | 19 | 7 | 1 | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAGAGG--------------------------------------------------- | 21 | 2 | 3 | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAGA----------------------------------------------------- | 19 | 1 | 3 | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAGAGGG-------------------------------------------------- | 22 | - | 3 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------TGTGGGCCACCTAGTCACCAACC-------- | 23 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TGTGGGCCACCTAGTCACCA----------- | 20 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAG------------------------------------------------------ | 18 | 1 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TGTGGGCCACCTAGTCACCAAC--------- | 22 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------CTGTGGGCCACCTAGTCACCAACC-------- | 24 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------CTGTGGGCCACCTAGTCACCAA---------- | 22 | - | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTCACCAA---------- | 23 | - | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTCACCAAC--------- | 24 | 2 | - | - | - | - | - | - | - | - | - | |
| ------GTGTGACTGGTTGACCAGAGGGG------------------------------------------------- | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------TGTGGGCCACCTAGTCAC------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTCAC------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------GTGGGCCACCTAGTCACCA----------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| --------GTGACTGGTTGACCAGAGGGGC------------------------------------------------ | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTCACCA----------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------GTGGGCCACCTAGTCACCAAC--------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTC--------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| --------GTGACTGGTTGACCAGAGGGG------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------GCCACCTAGTCACCAACC-------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------CCTGTGGGCCACCTAGTCACC------------ | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | CAGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTTTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTC----- | |||||||||||
| human | -AGGGTGTGTGACTGGTTGACCAGAGGGGCATGCACTGTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCAGCAT | |||||||||||
| mouse | -AGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTCTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCAGCAT | |||||||||||
| ***************************** ****** *********************************** | ||||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053749 ENSRNOG00000035626 rno-mir-134 | |||||||||||
| rat | .(((((..((((((((.((.(((.((((....((.....))...)))).)))..)).))))))))..))))). | 1.000 -34.90 | ||||||||||
| human | (((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..)))))...... | 1.000 -34.90 | ||||||||||
| mouse | (((((..((((((((.((.(((.((((....((.....))...)))).)))..)).))))))))..)))))...... | 1.000 -34.60 | ||||||||||
| rat | chromosome:6:134415632:134415704:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053749|ENSRNOG00000035626 ## ENSRNOG00000035626|miRNA|rno-mir-134|rno-mir-134 [Source:miRBase;Acc:MI0000907] ## {MIR: rno-mir-134} |
| human | chromosome:14:100590778:100590854:1 | Same_strand|Boundary_non-coding|ENST00000385258|ENSG00000207993|miRNA|hsa-mir-134 [Source:miRBase;Acc:MI0000474] ## {MIR: hsa-mir-134} |
| mouse | chromosome:12:110972349:110972425:1 | Same_strand|Boundary_non-coding|ENSMUST00000083492|ENSMUSG00000065426|miRNA|mmu-mir-134 [Source:miRBase;Acc:MI0000160] ## {MIR: mmu-mir-134} |
rno-mir-369
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-369 5arm | 2830 | 2489 | 3 | 6 | 14 | 19 | 4 | 13 | 16 | 33 |
| rno-mir-369 3arm | 192 | 97 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-369 5arm | 0.094 | 0.109 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.001 | 0.001 | 0.002 |
| rno-mir-369 3arm | 0.006 | 0.004 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0.000 |
sblock10521 (miRBase rno-mir-369) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-369 | 0.001 | no | no | 0.23/0.50 | 18/25/0.60 | 0.0 0.0 0.3 | 1.9 0.0 1.0 | 4957 1 235 | 0 0 0 | 10 1 5 | 0 0 0 | 13 22 9 | 4 -1 4 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.10 0.39 0.10 | 2 3 2 | 5719 | 10 | 2 | 3 |
| Located in cluster 76: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369, rno-mir-410 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------GAUCGAC-------------------------------------------------------------------------- | 5421 | miR-369 | |||||||||
| seed | ----------------------------------------------------------------AUAAUAC--------------------------------------- | 178 | miR-369 | |||||||||
| seed | ---------------------------------------------------------------AAUAAUA---------------------------------------- | 106 | novel | |||||||||
| seed | -----------------------------------------------------------------UAAUACA-------------------------------------- | 4 | novel | |||||||||
| seed | --------------------------------------------------------------GAAUAAU----------------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------------GACCGUG---------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------AGAUCGA--------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------------------AAUACAU------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------GAGAUCG---------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------UGUUAUA----------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------AGATCGACCGTGTTATAT---------------------------------------------------------------- | 18 | 985 | 850 | 1 | 1 | 8 | 9 | 1 | 4 | 3 | 12 | |
| rno-miR-369-5p | ----------------------------AGATCGACCGTGTTATATTCGC------------------------------------------------------------ | 22 | 852 | 810 | 1 | 2 | - | 6 | 2 | 4 | 4 | 6 |
| ----------------------------AGATCGACCGTGTTATATTC-------------------------------------------------------------- | 20 | 804 | 656 | 1 | 3 | 5 | 3 | 1 | 4 | 8 | 12 | |
| ----------------------------AGATCGACCGTGTTATATT--------------------------------------------------------------- | 19 | 153 | 128 | - | - | 1 | 1 | - | 1 | 1 | 3 | |
| ----------------------------AGATCGACCGTGTTATATTCG------------------------------------------------------------- | 21 | 30 | 33 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AATAATACATGGTTGATCT---------------------------- | 19 | 27 | 19 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AATAATACATGGTTGATC----------------------------- | 18 | 22 | 20 | - | - | - | - | - | - | - | - | |
| rno-miR-369-3p | ---------------------------------------------------------------AATAATACATGGTTGATCTTT-------------------------- | 21 | 26 | 10 | - | - | - | - | - | - | - | - |
| --------------------------------------------------------------GAATAATACATGGTTGATCT---------------------------- | 20 | 25 | 6 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------AATAATACATGGTTGATCTT--------------------------- | 20 | 21 | 9 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AATAATACATGGTTGATCTTTT------------------------- | 22 | 17 | 3 | - | - | - | - | 1 | - | 1 | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATCTT--------------------------- | 21 | 13 | 8 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATC----------------------------- | 19 | 14 | 6 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATCTTT-------------------------- | 22 | 12 | 7 | - | - | - | - | - | - | - | - | |
| ----------------------------AGATCGACCGTGTTATATTCGCT----------------------------------------------------------- | 23 | 3 | 8 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATCTTTT------------------------- | 23 | 3 | 3 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGAT------------------------------ | 18 | 2 | 4 | - | - | - | - | - | - | - | - | |
| --------------------------------CGACCGTGTTATATTCGC------------------------------------------------------------ | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------ATAATACATGGTTGATCT---------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------CGAATAATACATGGTTGATC----------------------------- | 20 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------AATAATACATGGTTGATCTTTTC------------------------ | 23 | 2 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATCTTTTC------------------------ | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------GGAGATCGACCGTGTTAT------------------------------------------------------------------ | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------GAGATCGACCGTGTTATA----------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------ATAATACATGGTTGATCTTT-------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------CGAATAATACATGGTTGA------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------GTGTTATATTCGCTTAGC------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------AGATCGACCGTGTTATATTCGCTT---------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------GAATAATACATGGTTGATCTTTTCT----------------------- | 25 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------GAGATCGACCGTGTTATAT---------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------TAATACATGGTTGATCTTT-------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------ATAATACATGGTTGATCTT--------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ---------------GGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTAGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATC---------------- | |||||||||||
| human | --------------TGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTTATTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCA--------------- | |||||||||||
| mouse | CTCAACACCTCTGCTGGTACTTGAAGGGAGATCGACCGTGTTATATTCGCTTGGCTGACTTCGAATAATACATGGTTGATCTTTTCTCAGTATCAACGCTCAGCTTGGAG | |||||||||||
| ************************************* *************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053620 ENSRNOG00000035497 rno-mir-369 | |||||||||||
| rat | ((((((.((..(((((((((((((((..((((((...((....)).))))))..)))))))))))))))..)))))))) | 1.000 -34.60 | ||||||||||
| human | .(((((.(((..(((((((((((((((..((((((............))))))..)))))))))))))))..)))))))). | 1.000 -35.20 | ||||||||||
| mouse | (((.....((..((((((((.(((..(((((((((((((((..((((((...((....)).))))))..)))))))))))))))..)))))))))..))..))....))) | 0.929 -40.40 | ||||||||||
| rat | chromosome:6:134424778:134424856:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053620|ENSRNOG00000035497 ## ENSRNOG00000035497|miRNA|rno-mir-369|rno-mir-369 [Source:miRBase;Acc:MI0003551] ## {MIR: rno-mir-369} |
| human | chromosome:14:100601682:100601762:1 | Same_strand|Boundary_non-coding|ENST00000362155|ENSG00000199025|miRNA|hsa-mir-369 [Source:miRBase;Acc:MI0000777] ## {SimpF: oe = 0.96 0 CpG,rank = 1 1 FirstEF} ## {MIR: hsa-mir-369} |
| mouse | chromosome:12:110981613:110981722:1 | Same_strand|Boundary_non-coding|ENSMUST00000083627|ENSMUSG00000065561|miRNA|mmu-mir-369 [Source:miRBase;Acc:MI0003535] ## {MIR: mmu-mir-369} |
rno-mir-410
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-410 5arm | 2 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| rno-mir-410 3arm | 250 | 147 | 0 | 0 | 0 | 1 | 0 | 0 | 0.500 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-410 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
| rno-mir-410 3arm | 0.008 | 0.006 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0.000 | 0.000 |
sblock10522 (miRBase rno-mir-410) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-410 | 0.001 | no | no | 0.32/0.50 | 18/23/0.57 | 0.0 0.0 | 0.0 0.9 | 4 406 | 0 0 | 3 5 | 0 0 | 10 10 | 0 4 | 5arm 3arm | 1 2 | nd nd | 0.23 0.22 | 2 2 | 516 | 5 | 3 | 2 |
| Located in cluster 76: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369, rno-mir-410 |
| Member of family miR-410 (seed AUAUAAC): rno-mir-410, sblock646_novel |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------------AUAUAAC-------------------------------------- | 497 | miR-410 | ||||
| seed | ------------------------------GGUUGUC-------------------------------------------------------------------------- | 8 | novel | ||||
| seed | -------------------------------------------------------------------UAUAACA------------------------------------- | 5 | novel | ||||
| seed | ----------------------------------------------------------------GAAUAUA---------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------GACGAAU------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------------AAUAUAA--------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------------------AUAACAC------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------AATATAACACAGATGGCCTG-------------------------- | 20 | 124 | 74 | - | - | - | |
| -----------------------------------------------------------------AATATAACACAGATGGCC---------------------------- | 18 | 91 | 69 | 1 | 1 | - | |
| rno-miR-410 | -----------------------------------------------------------------AATATAACACAGATGGCCTGT------------------------- | 21 | 48 | 27 | - | - | 1 |
| -----------------------------------------------------------------AATATAACACAGATGGCCT--------------------------- | 19 | 35 | 19 | 1 | - | - | |
| -----------------------------AGGTTGTCTGTGATGAGTTCGC------------------------------------------------------------ | 22 | - | 4 | - | - | - | |
| -----------------------------AGGTTGTCTGTGATGAGTTC-------------------------------------------------------------- | 20 | 1 | 1 | - | - | 1 | |
| -----------------------------------------------------------------AATATAACACAGATGGCCTGTTT----------------------- | 23 | 3 | - | - | - | - | |
| -----------------------------------------------------------------AATATAACACAGATGGCCTGTT------------------------ | 22 | 3 | - | - | - | - | |
| ------------------------------------------------------------------ATATAACACAGATGGCCTGTTT----------------------- | 22 | 2 | - | - | - | - | |
| ------------------------------------------------------------------ATATAACACAGATGGCCTG-------------------------- | 19 | 1 | 1 | - | - | - | |
| -----------------------------AGGTTGTCTGTGATGAGTT--------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ---------------------------------------------------------------CGAATATAACACAGATGGCCTG-------------------------- | 22 | 1 | - | - | - | - | |
| ---------------------------------------------------------------CGAATATAACACAGATGGCCT--------------------------- | 21 | - | 1 | - | - | - | |
| -------------------------------------------------------------------TATAACACAGATGGCCTG-------------------------- | 18 | 1 | - | - | - | - | |
| ------------------------------------------------------------TGACGAATATAACACAGATG------------------------------- | 20 | 1 | - | - | - | - | |
| ------------------------------------------------------------------ATATAACACAGATGGCCTGT------------------------- | 20 | 1 | - | - | - | - | |
| ----------------------------------------------------------------GAATATAACACAGATGGC----------------------------- | 18 | 1 | - | - | - | - | |
| ------------------------------------------------------------TGACGAATATAACACAGAT-------------------------------- | 19 | 1 | - | - | - | - | |
| rat | -------------------ACTTGAGGAGAGGTTGTCTGTGATGAGTTCGC-TTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACC--------------- | ||||||
| human | GC--------ACTCTGGGTACCTGAGAAGAGGTTGTCTGTGATGAGTTCGCTTTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAGTACC--------------- | ||||||
| mouse | GCTGCGGTCAACACTGGGTACTTGAGGAGAGGTTGTCTGTGATGAGTTCGC-TTTATTAATGACGAATATAACACAGATGGCCTGTTTTCAATACCACCTGCCACTCCGGT | ||||||
| ** **** ************************ *************************************** **** | |||||||
| .>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >.... | ENSRNOT00000053680 ENSRNOG00000035557 rno-mir-410 | ||||||
| rat | ..(((((((.((((..((((((.((.(((((( .........).))))).)).))))))..)))).))))))).... | 1.000 -30.20 | |||||
| human | .. ......((((.(((((((.((((..((((((.((.(((((.((........))))))).)).))))))..)))).))))))))))) | 0.998 -36.50 | |||||
| mouse | ((((.(((...((...((((.(((((((.((((..((((((.((.(((((. ((.......))))))).)).))))))..)))).)))))))))))...))..))).)))) | 0.974 -39.70 | |||||
| rat | chromosome:6:134425082:134425157:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053680|ENSRNOG00000035557 ## Same_strand|Boundary_non-coding|ENSRNOT00000053680|ENSRNOG00000035557 ## ENSRNOG00000035557|miRNA|rno-mir-410|rno-mir-410 [Source:miRBase;Acc:MI0006143] ## {MIR: rno-mir-410} |
| human | chromosome:14:100601994:100602081:1 | Same_strand|Boundary_non-coding|ENST00000362222|ENSG00000199092|miRNA|hsa-mir-410 [Source:miRBase;Acc:MI0002465] ## {SimpF: oe = 0.96 0 CpG} ## {MIR: hsa-mir-410} |
| mouse | chromosome:12:110981910:110982019:1 | Same_strand|Boundary_non-coding|ENSMUST00000083563|ENSMUSG00000065497|miRNA|mmu-mir-410 [Source:miRBase;Acc:MI0001161] ## {MIR: mmu-mir-410} |
rno-mir-135a
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-135a 5arm | 12166 | 11126 | 28 | 25 | 89 | 35 | 38 | 72 | 513 | 589 |
| rno-mir-135a 3arm | 104 | 76 | 0 | 0 | 0 | 0 | 0 | 2 | 5 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-135a 5arm | 0.404 | 0.486 | 0.002 | 0.001 | 0.004 | 0.003 | 0.003 | 0.004 | 0.034 | 0.039 |
| rno-mir-135a 3arm | 0.003 | 0.003 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0.000 |
sblock10788 (miRBase rno-mir-135a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-135a | 0.001 | no | no | 0.25/0.56 | 18/24/0.63 | 0.0 0.0 | 2.5 0.3 | 20663 108 | 0 0 | 10 5 | 0 0 | 22 18 | 2 6 | 5arm 3arm | 1 1 | nd nd | 0.05 0.00 | 1 0 | 24874 | 10 | 3 | 2 |
| Member of family miR-135a/135b (seed AUGGCUU): rno-mir-135b, rno-mir-135a |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------AUGGCUU---------------------------------------------------------------------- | 24493 | miR-135a/135b | |||||||||
| seed | -----------------------------------UGGCUUU--------------------------------------------------------------------- | 181 | novel | |||||||||
| seed | -------------------------------------------------------------------------GUAGGGA------------------------------- | 155 | miR-135a* | |||||||||
| seed | ------------------------------------------------------------------------UGUAGGG-------------------------------- | 32 | novel | |||||||||
| seed | -------------------------------------GCUUUUU------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | ------------------------------------GGCUUUU-------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------------------UAGGGAU------------------------------ | 2 | novel | |||||||||
| seed | ---------------------------------UAUGGCU----------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------UUUUUAU----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------CUUUUUA------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-miR-135a | ---------------------------------TATGGCTTTTTATTCCTATGTGA------------------------------------------------------- | 23 | 3357 | 2865 | 2 | 2 | 17 | 8 | 6 | 18 | 141 | 151 |
| ---------------------------------TATGGCTTTTTATTCCTA------------------------------------------------------------ | 18 | 3169 | 2953 | 12 | 7 | 24 | 13 | 9 | 16 | 128 | 125 | |
| ---------------------------------TATGGCTTTTTATTCCTATGT--------------------------------------------------------- | 21 | 2368 | 2333 | 4 | 6 | 15 | 3 | 13 | 15 | 114 | 112 | |
| ---------------------------------TATGGCTTTTTATTCCTAT----------------------------------------------------------- | 19 | 1320 | 1275 | 9 | 6 | 10 | 2 | - | 12 | 47 | 62 | |
| ---------------------------------TATGGCTTTTTATTCCTATGTG-------------------------------------------------------- | 22 | 1023 | 842 | - | 3 | 12 | 4 | 5 | 4 | 50 | 102 | |
| ---------------------------------TATGGCTTTTTATTCCTATG---------------------------------------------------------- | 20 | 830 | 770 | 1 | 1 | 10 | 4 | 5 | 5 | 28 | 32 | |
| ----------------------------------ATGGCTTTTTATTCCTATGTGA------------------------------------------------------- | 22 | 39 | 38 | - | - | 1 | - | - | 2 | - | 4 | |
| ------------------------------------------------------------------------TGTAGGGATGGAAGCCATGAA------------------ | 21 | 46 | 28 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------ATGGCTTTTTATTCCTATGT--------------------------------------------------------- | 20 | 19 | 20 | - | - | - | - | - | - | 4 | - | |
| ------------------------------------------------------------------------TGTAGGGATGGAAGCCATGA------------------- | 20 | 20 | 14 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------ATGGCTTTTTATTCCTATGTG-------------------------------------------------------- | 21 | 14 | 13 | - | - | - | 1 | - | - | - | 1 | |
| ------------------------------------------------------------------------TGTAGGGATGGAAGCCATG-------------------- | 19 | 13 | 5 | - | - | - | - | - | - | - | - | |
| ----------------------------------ATGGCTTTTTATTCCTATG---------------------------------------------------------- | 19 | 7 | 10 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------TGTAGGGATGGAAGCCAT--------------------- | 18 | 7 | 7 | - | - | - | - | - | - | - | - | |
| rno-miR-135a* | ------------------------------------------------------------------------TGTAGGGATGGAAGCCATGAAA----------------- | 22 | 4 | 7 | - | - | - | - | - | - | 1 | 1 |
| ---------------------------------TATGGCTTTTTATTCCTATGTGAT------------------------------------------------------ | 24 | 9 | 3 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------ATGTAGGGATGGAAGCCATGAA------------------ | 22 | 7 | 1 | - | - | - | - | - | - | 3 | - | |
| ----------------------------------ATGGCTTTTTATTCCTAT----------------------------------------------------------- | 18 | 6 | 2 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------ATGTAGGGATGGAAGCCATGA------------------- | 21 | 2 | 5 | - | - | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------------ATGTAGGGATGGAAGCCA---------------------- | 18 | 2 | 5 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------ATGTAGGGATGGAAGCCATG-------------------- | 20 | 1 | 1 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------ATGTAGGGATGGAAGCCAT--------------------- | 19 | - | 3 | - | - | - | - | - | - | - | - | |
| ------------------------------------GGCTTTTTATTCCTATGTGA------------------------------------------------------- | 20 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GTAGGGATGGAAGCCATG-------------------- | 18 | 2 | - | - | - | - | - | - | - | - | - | |
| --------------------------------TTATGGCTTTTTATTCCTA------------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------GCTTTTTATTCCTATGTGA------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------TGGCTTTTTATTCCTATGT--------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------GGCTTTTTATTCCTATGT--------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------GGCTTTTTATTCCTATGTG-------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------TTATGGCTTTTTATTCCTAT----------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------TGGCTTTTTATTCCTATGTG-------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------CTTTTTATTCCTATGTGA------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | -----------AGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATCGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAATTCA | |||||||||||
| human | GCATCCGACCAAGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAAATC- | |||||||||||
| mouse | ---TCCGACCAAGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATCGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAA------ | |||||||||||
| ********************************************** *********************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... | ENSRNOT00000053652 ENSRNOG00000035529 rno-mir-135a | |||||||||||
| rat | .((....(((((....(((.((((((((((((.((((((((((((.(........)..)))))))))))))))))))))))).)))...)))))...)). | 1.000 -34.80 | ||||||||||
| human | ..................(((((....(((.((((((((.((((((((((((((((.............)))))))))))))))))))))))).)))...)))))..... | 0.834 -33.92 | ||||||||||
| mouse | ...............(((((....(((.((((((((.((((((((((((((((.............)))))))))))))))))))))))).)))...))))) | 0.972 -33.12 | ||||||||||
| rat | chromosome:7:29077659:29077758:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000053652|ENSRNOG00000035529 ## Same_strand|Exonic_non-coding|ENSRNOT00000053652|ENSRNOG00000035529 ## ENSRNOG00000035529|miRNA|rno-mir-135a|rno-mir-135a [Source:miRBase;Acc:MI0000908] ## {MIR: rno-mir-135a} |
| human | chromosome:12:96481710:96481819:1 | Same_strand|Boundary_non-coding|ENST00000384854|ENSG00000207586|miRNA|hsa-mir-135a-2 [Source:miRBase;Acc:MI0000453] ## {MIR: hsa-mir-135a-2} |
| mouse | chromosome:10:91534837:91534938:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083590|ENSMUSG00000065524|miRNA|mmu-mir-135a-2 [Source:miRBase;Acc:MI0000715] ## {MIR: mmu-mir-135a-2} |
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