========== block976204 (miRBase rno-mir-343) [miRNAknown_lenNOK_mirtron] ========== #randfold block976204: 0.120 #forester #identity: 0.00 block976204 TCTCCCTCCGTGTGCCCAG #rat_gr900238_libT1S1 19 1 block976204 TCTCCCTCCGTGTGCCCAG #rat_gr900238_libT1S2 19 1 block976204 TCTCCCTCCGTGTGCCCAGA #rat_gr900239_libMirbase_rno-miR-343 20 1 block976204 TCTCCCTCCGTGTGCCCAGA #rat_gr900239_libT1S1 20 1 block976204 TCTCCCTCCGTGTGCCCAGA #rat_gr900239_libT1S2 20 1 block976204 gcaccttcatggacctggagtagagtgggtgtggcggggggagcagggcccagggcaaccTCTCCCTCCGTGTGCCCAGAtcctgcatgccaa ********************************************************************************************* block976204 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> #ENSRNOT00000024246 ENSRNOG00000017753 Ercc2 block976204 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054424 ENSRNOG00000036303 rno-mir-343 block976204 ...((.....))...(((.(((((.((((..((.(((((((((.((((((...)))..))))))))))))))..))))..).))))...))). 1.000 -40.60 # #block976204 chromosome:1:78904571:78904663:1 Same_strand|Boundary_coding|ENSRNOT00000024246|ENSRNOG00000017753 ## Same_strand|Exonic_non-coding|ENSRNOT00000054424|ENSRNOG00000036303 ## ENSRNOG00000017753|protein_coding|Ercc2|excision repair cross-complementing rodent repair deficiency, complementation group 2 Gene [Source:MGI (curated);Acc:Ercc2-002] ## ENSRNOG00000036303|miRNA|rno-mir-343|rno-mir-343 [Source:miRBase;Acc:MI0000628] ## {MIR: rno-mir-343} ========== block2895943 (miRBase rno-mir-881) [miRNAknown_lenNOK_randfoldOK] ========== #randfold block2895943: 0.001 randfold mouseZ17p1_block2895943: 0.001 #forester mouseZ17p1_block2895943: 0.719407 #identity: 90.91 block2895943 AACTGTGGCATTTCTGAATAGA #rat_gr39289_libMirbase_rno-miR-881 22 1 block2895943 AACTGTGGCATTTCTGAATAGA #rat_gr39289_libT1S1 22 1 block2895943 TAACTGTGGCATTTCTGAATAG #rat_gr718267_libT3S2 22 1 block2895943 TAACTGTGGCATTTCTGAATAG #rat_gr718267_libT5S1 22 1 block2895943 TAACTGTGGCATTTCTGAA #rat_gr718266_libT1S1 19 1 block2895943 TAACTGTGGCATTTCTGAA #rat_gr718266_libT5S1 19 1 block2895943 ---TGCAGTACAATATTCAGAGTGGTAGCAGTCAC-TTTATTCTAAAGTAACTGTGGCATTTCTGAATAGAGTAATGTTCA- mouseZ17p1 GTGTGCAGTACAATATTCAGAGAGATAACAGTCACATCTTTTCTAAAGTAACTGTGTCTTTTCTGAATAGAGTAATGTTCAC ******************* * ** ******* * * **************** * ********************** block2895943 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000063052 ENSRNOG00000041299 rno-mir-881 block2895943 .(((.(((..(((((((((..((.(((((.(( ((((...)))))).))))).))..)))))))))..))).)))... 1.000 -25.70 # mouseZ17p1 (((.(((.(((..(((((((((((((.(((((.((............)).))))))))))).)))))))..))).))).))) 1.000 -26.20 # #block2895943 chromosome:X:152852188:152852264:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063052|ENSRNOG00000041299 ## ENSRNOG00000041299|miRNA|rno-mir-881|rno-mir-881 [Source:miRBase;Acc:MI0006123] ## {MIR: rno-mir-881} #mouseZ17p1 chromosome:X:64055118:64055199:-1 Same_strand|Boundary_non-coding|ENSMUST00000104844|ENSMUSG00000078038|miRNA|mmu-mir-881 [Source:miRBase;Acc:MI0005474] ## {MIR: mmu-mir-881} ========== sblock10429 (miRBase rno-mir-342) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK_bulgeHIGH] ========== #randfold sblock10429: 0.001 randfold humanZ1p82_sblock10429: 0.003 randfold mouseZ1p82_sblock10429: 0.001 #forester humanZ1p82_sblock10429: 0.87659 forester mouseZ1p82_sblock10429: 0.898019 #identity: 97.53 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT3S1 19 45 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT1S1 22 31 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT3S1 22 29 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT1S1 19 28 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT3S2 19 24 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT3S2 22 24 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT3S1 21 23 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT1S2 19 22 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT1S1 21 21 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT3S1 18 18 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT1S1 21 16 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT3S1 21 14 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT1S1 18 13 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT3S1 19 12 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT1S2 22 11 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT3S1 20 11 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT3S1 18 10 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT1S1 23 10 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT3S1 23 10 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT3S2 21 10 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT1S2 21 9 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT3S2 21 9 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT1S2 20 9 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT1S1 22 8 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT3S1 22 8 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT3S1 25 8 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT3S2 25 8 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT5S1 19 7 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT3S1 20 7 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT5S1 22 7 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT1S2 18 7 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT3S2 18 7 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT5S1 21 7 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT1S2 18 6 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT3S2 18 6 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT4S2 19 6 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT5S2 19 6 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT1S1 20 6 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT3S1 26 5 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT3S2 20 5 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT1S2 21 5 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT1S2 25 5 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT5S1 18 4 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT5S2 18 4 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT1S1 20 4 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT1S2 20 4 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT5S2 22 4 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT1S1 18 4 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT1S2 19 4 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT3S2 22 4 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT3S1 23 4 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT3S2 20 3 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT5S1 20 3 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT5S2 21 3 sblock10429 AGGGGTGCTATCTGTGATTGAGGG #rat_gr188496_libT3S1 24 3 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT1S1 26 3 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT1S1 19 3 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT1S2 22 3 sblock10429 GGGGTGCTATCTGTGATTGAGGGA #rat_gr613791_libT3S2 24 3 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT4S1 25 3 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT2S1 18 2 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT2S1 19 2 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT4S1 22 2 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT1S2 23 2 sblock10429 AGGGGTGCTATCTGTGATTGAGGG #rat_gr188496_libT3S2 24 2 sblock10429 AGGGGTGCTATCTGTGATTGAGGG #rat_gr188496_libT5S2 24 2 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT1S2 26 2 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT3S2 26 2 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT5S1 18 2 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT3S2 19 2 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT2S1 20 2 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT2S2 21 2 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT4S2 21 2 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT1S2 23 2 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT5S2 25 2 sblock10429 AGGGGTGCTATCTGTGAT #rat_gr188490_libT4S1 18 1 sblock10429 AGGGGTGCTATCTGTGATT #rat_gr188491_libT4S1 19 1 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT2S1 20 1 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT4S1 20 1 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT4S2 20 1 sblock10429 AGGGGTGCTATCTGTGATTG #rat_gr188492_libT5S2 20 1 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT4S2 21 1 sblock10429 AGGGGTGCTATCTGTGATTGA #rat_gr188493_libT5S1 21 1 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libMirbase_rno-miR-342-5p 22 1 sblock10429 AGGGGTGCTATCTGTGATTGAG #rat_gr188494_libT4S2 22 1 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT2S1 23 1 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT2S2 23 1 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT3S2 23 1 sblock10429 AGGGGTGCTATCTGTGATTGAGG #rat_gr188495_libT5S2 23 1 sblock10429 AGGGGTGCTATCTGTGATTGAGGG #rat_gr188496_libT2S1 24 1 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT4S2 26 1 sblock10429 AGGGGTGCTATCTGTGATTGAGGGAC #rat_gr188497_libT5S1 26 1 sblock10429 GGGGTGCTATCTGTGATT #rat_gr613785_libT5S2 18 1 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT5S1 19 1 sblock10429 GGGGTGCTATCTGTGATTG #rat_gr613786_libT5S2 19 1 sblock10429 GGGGTGCTATCTGTGATTGA #rat_gr613787_libT2S2 20 1 sblock10429 GGGGTGCTATCTGTGATTGAG #rat_gr613788_libT5S2 21 1 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT2S2 22 1 sblock10429 GGGGTGCTATCTGTGATTGAGG #rat_gr613789_libT5S1 22 1 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT2S2 23 1 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT3S2 23 1 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT4S1 23 1 sblock10429 GGGGTGCTATCTGTGATTGAGGG #rat_gr613790_libT5S1 23 1 sblock10429 GGGGTGCTATCTGTGATTGAGGGA #rat_gr613791_libT1S2 24 1 sblock10429 GGGGTGCTATCTGTGATTGAGGGA #rat_gr613791_libT3S1 24 1 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT1S1 25 1 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT2S2 25 1 sblock10429 GGGGTGCTATCTGTGATTGAGGGAC #rat_gr613792_libT5S1 25 1 sblock10429 TGCTATCTGTGATTGAGGG #rat_gr971566_libT5S1 19 1 sblock10429 TGCTATCTGTGATTGAGGGAC #rat_gr971567_libT3S1 21 1 sblock10429 TGCTATCTGTGATTGAGGGAC #rat_gr971567_libT5S1 21 1 sblock10429 TGCTATCTGTGATTGAGGGACA #rat_gr971568_libT3S1 22 1 sblock10429 TGCTATCTGTGATTGAGGGACA #rat_gr971568_libT3S2 22 1 sblock10429 TGCTATCTGTGATTGAGGGACA #rat_gr971568_libT5S1 22 1 sblock10429 CATGGTCAATGGAATTGTC #rat_gr313218_libT3S1 19 2 sblock10429 CATGGTCAATGGAATTGTC #rat_gr313218_libT3S2 19 1 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT3S1 21 4052 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT3S1 24 3597 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT1S1 21 2905 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT3S2 21 2731 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT3S2 24 2363 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT1S1 24 2290 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT3S1 19 2162 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT1S2 21 1929 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT1S1 19 1738 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT3S2 19 1362 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT1S2 24 1323 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT3S1 22 1131 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT3S1 18 1123 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT3S1 20 1041 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT1S2 19 1038 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT3S2 22 971 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT3S2 18 772 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT5S1 24 764 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT1S1 20 755 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT3S1 19 755 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT5S1 21 746 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT5S2 21 720 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT1S1 18 712 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT1S1 22 678 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT1S1 19 624 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT3S2 20 604 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT5S2 24 570 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT1S2 20 499 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT4S2 21 438 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT1S2 18 435 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT3S2 19 416 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT1S2 19 407 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT4S2 24 396 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT5S1 19 388 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT1S2 22 377 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT5S2 19 376 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT4S1 24 293 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT4S1 21 278 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT2S2 21 229 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT5S2 22 218 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT3S1 18 217 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT4S2 19 205 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT1S1 26 201 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT3S1 20 200 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT5S1 22 199 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT5S2 20 196 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT3S1 24 193 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT5S2 18 191 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT5S1 18 181 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT5S1 20 178 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT1S1 24 173 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT3S1 22 163 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT2S2 24 159 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT5S1 19 156 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT5S2 19 153 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT1S1 18 144 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT1S1 22 133 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT1S1 20 131 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT4S2 22 125 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT1S2 26 125 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT4S1 19 121 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT2S2 19 112 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT4S2 20 106 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT3S1 26 105 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT3S2 22 104 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT1S2 22 101 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT3S2 20 99 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT3S2 18 98 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT1S2 24 95 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT4S2 19 90 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT3S2 24 88 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT1S2 20 83 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT4S2 18 82 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT3S1 23 79 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT3S1 23 71 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT4S1 20 67 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT2S2 22 66 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT1S2 18 66 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT4S1 22 62 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT2S2 18 61 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT3S1 21 59 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT4S1 18 57 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT3S1 20 55 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT2S2 19 55 sblock10429 TCTCACACAGAAATCGCAC #rat_gr895399_libT2S1 19 54 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT3S2 26 54 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT3S2 23 52 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT1S1 23 51 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT2S2 20 50 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT1S1 20 43 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT3S1 23 42 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT5S2 20 38 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT5S1 24 36 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT5S2 18 35 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT3S2 21 35 sblock10429 TCTCACACAGAAATCGCACCC #rat_gr895401_libT2S1 21 34 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT3S2 23 34 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT4S1 19 34 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT1S2 23 33 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT4S2 24 33 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT1S1 23 31 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT5S1 22 31 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT5S2 24 31 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT3S2 20 30 sblock10429 TCTCACACAGAAATCGCACC #rat_gr895400_libT2S1 20 29 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT5S2 22 28 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT5S1 26 27 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT3S2 23 27 sblock10429 TCTCACACAGAAATCGCA #rat_gr895398_libT2S1 18 26 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT3S1 19 26 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT1S1 21 26 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT1S2 20 25 sblock10429 TCTCACACAGAAATCGCACCCGTC #rat_gr895404_libT2S1 24 24 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT5S1 20 24 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT4S2 22 23 sblock10429 TCTCACACAGAAATCGCACCCG #rat_gr895402_libT2S1 22 22 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT3S2 19 21 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT4S2 26 20 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT5S1 18 19 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT3S1 25 18 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT4S2 18 18 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT5S2 23 17 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT3S1 18 16 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT1S1 19 16 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT1S2 21 16 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT1S1 23 16 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT1S2 23 16 sblock10429 TCACACAGAAATCGCACCC #rat_gr810528_libT2S1 19 15 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT3S1 21 14 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT4S1 24 14 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT5S1 23 13 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT5S1 20 13 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT2S2 20 13 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT5S2 21 13 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT4S1 26 12 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT1S2 18 12 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT5S2 20 12 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT3S2 21 12 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT4S2 20 12 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT1S2 19 11 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT4S2 23 11 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT2S2 26 10 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT5S2 26 10 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT3S2 18 10 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT5S1 19 10 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT4S2 20 10 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT1S2 23 10 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT3S1 25 10 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT5S1 25 10 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT1S2 25 9 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT1S2 21 9 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT2S1 18 9 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT5S1 23 9 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT5S2 23 9 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT1S1 25 9 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT1S1 18 8 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT1S1 21 8 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT5S1 23 8 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT5S2 23 8 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT4S1 20 8 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT4S2 23 8 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT4S1 23 7 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT4S1 20 7 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT4S1 21 7 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT2S2 18 7 sblock10429 TCACACAGAAATCGCACC #rat_gr810527_libT4S1 18 7 sblock10429 TCACACAGAAATCGCACCCGTCAC #rat_gr810533_libT2S2 24 7 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT1S2 25 7 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT4S2 23 6 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT3S2 25 6 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT5S2 19 6 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT4S1 22 6 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT1S2 18 6 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT1S1 25 5 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT5S1 21 5 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT3S2 25 5 sblock10429 CTCACACAGAAATCGCACCCGT #rat_gr417097_libT3S1 22 4 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT2S1 22 4 sblock10429 TCACACAGAAATCGCACCCGTC #rat_gr810531_libT2S2 22 4 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT2S2 23 3 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT4S1 19 3 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT5S1 21 3 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT1S1 25 3 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT2S2 23 3 sblock10429 TCACACAGAAATCGCACCCGTCA #rat_gr810532_libT4S1 23 3 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT1S1 18 3 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT3S1 18 3 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT3S2 18 3 sblock10429 CACACAGAAATCGCACCCGTC #rat_gr276524_libT1S1 21 3 sblock10429 CACACAGAAATCGCACCCGTC #rat_gr276524_libT3S1 21 3 sblock10429 GTCTCACACAGAAATCGCACCCGTC #rat_gr640387_libT1S2 25 2 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT2S2 18 2 sblock10429 CTCACACAGAAATCGCAC #rat_gr417093_libT4S2 18 2 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT2S1 19 2 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT4S2 19 2 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT5S2 21 2 sblock10429 CTCACACAGAAATCGCACCCGT #rat_gr417097_libT5S2 22 2 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT4S1 23 2 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT3S1 25 2 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT3S2 25 2 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT4S2 21 2 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT2S2 25 2 sblock10429 TCACACAGAAATCGCACCCGTCACC #rat_gr810534_libT5S2 25 2 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT4S1 18 2 sblock10429 CACACAGAAATCGCACCCG #rat_gr276522_libT3S1 19 2 sblock10429 CACACAGAAATCGCACCCGTC #rat_gr276524_libT5S1 21 2 sblock10429 CACACAGAAATCGCACCCGTCAC #rat_gr276525_libT1S2 23 2 sblock10429 ACACAGAAATCGCACCCG #rat_gr72615_libT3S1 18 2 sblock10429 ACAGAAATCGCACCCGTC #rat_gr76218_libT3S1 18 2 sblock10429 GTCTCACACAGAAATCGCACCCGTC #rat_gr640387_libT3S1 25 1 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libMirbase_rno-miR-342-3p 23 1 sblock10429 TCTCACACAGAAATCGCACCCGT #rat_gr895403_libT2S1 23 1 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT2S1 25 1 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT2S2 25 1 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT4S1 25 1 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT4S2 25 1 sblock10429 TCTCACACAGAAATCGCACCCGTCA #rat_gr895405_libT5S1 25 1 sblock10429 TCTCACACAGAAATCGCACCCGTCAC #rat_gr895406_libT2S1 26 1 sblock10429 CTCACACAGAAATCGCACC #rat_gr417094_libT2S2 19 1 sblock10429 CTCACACAGAAATCGCACCC #rat_gr417095_libT2S2 20 1 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT2S1 21 1 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT2S2 21 1 sblock10429 CTCACACAGAAATCGCACCCG #rat_gr417096_libT4S2 21 1 sblock10429 CTCACACAGAAATCGCACCCGT #rat_gr417097_libT1S2 22 1 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT2S1 23 1 sblock10429 CTCACACAGAAATCGCACCCGTC #rat_gr417098_libT2S2 23 1 sblock10429 CTCACACAGAAATCGCACCCGTCA #rat_gr417099_libT5S2 24 1 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT1S2 25 1 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT2S2 25 1 sblock10429 CTCACACAGAAATCGCACCCGTCAC #rat_gr417100_libT5S1 25 1 sblock10429 CTCACACAGAAATCGCACCCGTCACC #rat_gr417101_libT3S1 26 1 sblock10429 TCACACAGAAATCGCACCCG #rat_gr810529_libT2S1 20 1 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT2S2 21 1 sblock10429 TCACACAGAAATCGCACCCGT #rat_gr810530_libT4S1 21 1 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT5S1 18 1 sblock10429 CACACAGAAATCGCACCC #rat_gr276521_libT5S2 18 1 sblock10429 CACACAGAAATCGCACCCG #rat_gr276522_libT5S2 19 1 sblock10429 CACACAGAAATCGCACCCGT #rat_gr276523_libT1S2 20 1 sblock10429 CACACAGAAATCGCACCCGTCAC #rat_gr276525_libT3S1 23 1 sblock10429 ACACAGAAATCGCACCCGTC #rat_gr72616_libT1S1 20 1 sblock10429 ACAGAAATCGCACCCGTC #rat_gr76218_libT5S2 18 1 sblock10429 ACAGAAATCGCACCCGTCA #rat_gr76219_libT1S1 19 1 sblock10429 CAGAAATCGCACCCGTCA #rat_gr285942_libT1S1 18 1 sblock10429 --------------------GAAAATGGGCTCAAGGTGAGGGGTGCTATCTGTGATTGAGGGACATGGTCAATGGAATTGTCTCACACAGAAATCGCACCCGTCACCTTGGCCTGCTGA------------------- humanZ1p82 CCGCTTGCTGGCCAACCTGTGAAACTGGGCTCAAGGTGAGGGGTGCTATCTGTGATTGAGGGACATGGTTAATGGAATTGTCTCACACAGAAATCGCACCCGTCACCTTGGCCTACTTATCACCACCCCAAACAGAGG mouseZ1p82 --------------------------GGGCTCAAGGTGAGGGGTGCTATCTGTGATTGAGGGACATGGTCAATGGAATTGTCTCACACAGAAATCGCACCCGTCACCTTGGCCTGCTG-------------------- ******************************************* ******************************************** ** sblock10429 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000032757 ENSRNOG00000014476 Evl sblock10429 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000019583 ENSRNOG00000014476 Evl sblock10429 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053735 ENSRNOG00000035612 rno-mir-342 sblock10429 ......((((.((((((((.((((((..((((((.....((((((...((....))..)))))).))))))....)))))).))))))))))))..... 1.000 -48.90 # humanZ1p82 ((.((...(((.......((((((.(((((.((((((((.((((((..((((((.....((((((...((....))..)))))).))))))....)))))).))))))))))))).)).))))....)))...)).)) 0.819 -54.00 # mouseZ1p82 ((((.((((((((.((((((..((((((.....((((((...((....))..)))))).))))))....)))))).)))))))))))).... 1.000 -48.70 # #sblock10429 chromosome:6:132990797:132990895:1 Same_strand|Exonic_non-coding|ENSRNOT00000053735|ENSRNOG00000035612 ## Same_strand|Intronic_coding|ENSRNOT00000019583|ENSRNOG00000014476 ## Same_strand|Boundary_non-coding|ENSRNOT00000053735|ENSRNOG00000035612 ## ENSRNOG00000035612|miRNA|rno-mir-342|rno-mir-342 [Source:miRBase;Acc:MI0000626] ## ENSRNOG00000014476|protein_coding|Evl|Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein- like). [Source:UniProtKB/Swiss-Prot;Acc:O08719] ## {MIR: rno-mir-342} #humanZ1p82 chromosome:14:99645725:99645862:1 Same_strand|Intronic_coding|ENST00000355449|ENSG00000196405|protein_coding|Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein-like) [Source:UniProtKB/Swiss-Prot;Acc:Q9UI08] ## Same_strand|Boundary_non-coding|ENST00000362212|ENSG00000199082|miRNA|hsa-mir-342 [Source:miRBase;Acc:MI0000805] ## {MIR: hsa-mir-342} #mouseZ1p82 chromosome:12:109896836:109896927:1 Same_strand|Intronic_coding|ENSMUST00000109854|ENSMUSG00000021262|protein_coding|Ena-vasodilator stimulated phosphoprotein Gene [Source:MGI Symbol;Acc:MGI:1194884] ## Same_strand|Exonic_non-coding|ENSMUST00000083502|ENSMUSG00000065436|miRNA|mmu-mir-342 [Source:miRBase;Acc:MI0000627] ## {MIR: mmu-mir-342} ========== sblock10436 (miRBase rno-mir-770) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10436: 0.001 randfold humanZ4p82_sblock10436: 0.001 randfold mouseZ5p82_sblock10436: 0.001 #forester humanZ4p82_sblock10436: 0.610319 forester mouseZ5p82_sblock10436: 1 #identity: 88.50 sblock10436 AGCACCACGTGTCTGGGCCAC #rat_gr150662_libT1S2 21 154 sblock10436 AGCACCACGTGTCTGGGCCAC #rat_gr150662_libT1S1 21 134 sblock10436 AGCACCACGTGTCTGGGCC #rat_gr150660_libT1S1 19 78 sblock10436 AGCACCACGTGTCTGGGCC #rat_gr150660_libT1S2 19 67 sblock10436 AGCACCACGTGTCTGGGCCA #rat_gr150661_libT1S1 20 64 sblock10436 AGCACCACGTGTCTGGGCCA #rat_gr150661_libT1S2 20 53 sblock10436 AGCACCACGTGTCTGGGC #rat_gr150659_libT1S2 18 29 sblock10436 AGCACCACGTGTCTGGGC #rat_gr150659_libT1S1 18 23 sblock10436 AGCACCACGTGTCTGGGCCACGT #rat_gr150664_libT1S2 23 18 sblock10436 AGCACCACGTGTCTGGGCCACG #rat_gr150663_libT1S1 22 16 sblock10436 AGCACCACGTGTCTGGGCCACGT #rat_gr150664_libT1S1 23 15 sblock10436 AGCACCACGTGTCTGGGCCACG #rat_gr150663_libT1S2 22 10 sblock10436 AGCACCACGTGTCTGGGCCAC #rat_gr150662_libT4S2 21 2 sblock10436 AGCACCACGTGTCTGGGCCACGTG #rat_gr150665_libT1S1 24 2 sblock10436 AGCACCACGTGTCTGGGCCAC #rat_gr150662_libT4S1 21 1 sblock10436 AGCACCACGTGTCTGGGCCACG #rat_gr150663_libMirbase_rno-miR-770 22 1 sblock10436 GTGGGCCTGACGTGGAGCT #rat_gr651380_libT1S1 19 120 sblock10436 GTGGGCCTGACGTGGAGCT #rat_gr651380_libT1S2 19 102 sblock10436 GTGGGCCTGACGTGGAGC #rat_gr651379_libT1S2 18 85 sblock10436 GTGGGCCTGACGTGGAGC #rat_gr651379_libT1S1 18 71 sblock10436 TGGGCCTGACGTGGAGCTGG #rat_gr1035332_libT1S1 20 68 sblock10436 CGTGGGCCTGACGTGGAGC #rat_gr405359_libT1S1 19 65 sblock10436 TGGGCCTGACGTGGAGCT #rat_gr1035330_libT1S2 18 62 sblock10436 CGTGGGCCTGACGTGGAGC #rat_gr405359_libT1S2 19 58 sblock10436 TGGGCCTGACGTGGAGCT #rat_gr1035330_libT1S1 18 55 sblock10436 CGTGGGCCTGACGTGGAGCT #rat_gr405360_libT1S1 20 49 sblock10436 CGTGGGCCTGACGTGGAGCT #rat_gr405360_libT1S2 20 44 sblock10436 TGGGCCTGACGTGGAGCTG #rat_gr1035331_libT1S1 19 42 sblock10436 TGGGCCTGACGTGGAGCTGG #rat_gr1035332_libT1S2 20 40 sblock10436 GTGGGCCTGACGTGGAGCTGG #rat_gr651382_libT1S1 21 38 sblock10436 GTGGGCCTGACGTGGAGCTG #rat_gr651381_libT1S1 20 36 sblock10436 TGGGCCTGACGTGGAGCTG #rat_gr1035331_libT1S2 19 25 sblock10436 CGTGGGCCTGACGTGGAG #rat_gr405358_libT1S2 18 23 sblock10436 CGTGGGCCTGACGTGGAGCTG #rat_gr405361_libT1S2 21 20 sblock10436 CGTGGGCCTGACGTGGAG #rat_gr405358_libT1S1 18 19 sblock10436 GTGGGCCTGACGTGGAGCTGG #rat_gr651382_libT1S2 21 18 sblock10436 GTGGGCCTGACGTGGAGCTG #rat_gr651381_libT1S2 20 16 sblock10436 CGTGGGCCTGACGTGGAGCTG #rat_gr405361_libT1S1 21 13 sblock10436 CGTGGGCCTGACGTGGAGCTGG #rat_gr405362_libT1S1 22 8 sblock10436 TGGGCCTGACGTGGAGCTGGG #rat_gr1035333_libT1S1 21 6 sblock10436 TGGGCCTGACGTGGAGCTGGG #rat_gr1035333_libT1S2 21 6 sblock10436 CGTGGGCCTGACGTGGAGCTGG #rat_gr405362_libT1S2 22 4 sblock10436 CGTGGGCCTGACGTGGAGCTG #rat_gr405361_libT3S2 21 2 sblock10436 GTGGGCCTGACGTGGAGCT #rat_gr651380_libT5S2 19 2 sblock10436 CGTGGGCCTGACGTGGAGC #rat_gr405359_libT4S2 19 1 sblock10436 GTGGGCCTGACGTGGAGC #rat_gr651379_libT5S1 18 1 sblock10436 GTGGGCCTGACGTGGAGCT #rat_gr651380_libT4S2 19 1 sblock10436 GTGGGCCTGACGTGGAGCTGGG #rat_gr651383_libT1S1 22 1 sblock10436 TGGGCCTGACGTGGAGCTGG #rat_gr1035332_libT4S2 20 1 sblock10436 TGGGCCTGACGTGGAGCTGGGG #rat_gr1035334_libT1S1 22 1 sblock10436 ------------CTGTGCCCCCAGCACCACGTGTCTGGGCCACGTGAGCAACGCCACGTGGGCCTGACGTGGAGCTGGGGCCGCAGGG---------- humanZ4p82 AGGAGCCACCTTCCGAGCCTCCAGTACCACGTGTCAGGGCCACATGAGCTGGGCCTCGTGGGCCTGATGTGGTGCTGGGGCCTCAGGGGTCTGCTCTT mouseZ5p82 ------------------CCCCAGCACCACGTGTCTGGGCCACGTGAGCAACGCCACGTGGGCCTGACGTGGAGCTGGGG------------------ * **** ********** ******* ***** *** *********** **** ******* sblock10436 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000062137 ENSRNOG00000040384 rno-mir-770 sblock10436 (((((.(((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))).))))).. 1.000 -52.20 # humanZ4p82 ((((((.(((((..(((.((((((((((((((....(((((.((((((......))))))))))).)))))))))))))).))).)))))..)))))) 1.000 -56.70 # mouseZ5p82 (((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))) 1.000 -43.20 # #sblock10436 chromosome:6:134141361:134141436:1 Same_strand|Exonic_non-coding|ENSRNOT00000062137|ENSRNOG00000040384 ## Same_strand|Boundary_non-coding|ENSRNOT00000062137|ENSRNOG00000040384 ## ENSRNOG00000040384|miRNA|rno-mir-770|rno-mir-770 [Source:miRBase;Acc:MI0006165] ## {MIR: rno-mir-770} #humanZ4p82 chromosome:14:100388480:100388577:1 Same_strand|Intronic_coding|ENST00000398518|ENSG00000214548|protein_coding|Full-length cDNA clone CS0DM001YI13 of Fetal liver of Homo sapiens (human) (HCG25025, isoform CRA_c) (Full-length cDNA clone CS0DM008YG24 of Fetal liver of Homo sapiens) [Source:UniProtKB/TrEMBL;Acc:Q86SH5] ## Same_strand|Intronic_non-coding|ENST00000398474|ENSG00000186316|protein_coding|cDNA FLJ32960 fis, clone TESTI2008240 [Source:UniProtKB/TrEMBL;Acc:Q96LZ5] ## Same_strand|Exonic_non-coding|ENST00000390219|ENSG00000211574|miRNA|hsa-mir-770 [Source:miRBase;Acc:MI0005118] ## {MIR: hsa-mir-770} #mouseZ5p82 chromosome:12:110801916:110801977:1 Same_strand|Intronic_non-coding|ENSMUST00000021696|ENSMUSG00000021268|protein_coding|maternally expressed 3 Gene [Source:MGI Symbol;Acc:MGI:1202886] ## Same_strand|Exonic_non-coding|ENSMUST00000103252|ENSMUSG00000076451|miRNA|mmu-mir-770 [Source:miRBase;Acc:MI0004203] ## {MIR: mmu-mir-770} ========== sblock10441 (miRBase rno-mir-431) [miRNAknown_lenNOK_cloningHIGH_shortStem] ========== #randfold sblock10441: 0.040 #forester #identity: 0.00 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT1S1 21 118 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT1S2 21 97 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT1S1 18 58 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT1S2 20 44 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT1S2 18 43 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT1S1 20 42 sblock10441 TGTCTTGCAGGCCGTCATG #rat_gr1082470_libT1S1 19 34 sblock10441 TGTCTTGCAGGCCGTCATG #rat_gr1082470_libT1S2 19 21 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT3S2 20 10 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT3S2 21 6 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT5S2 21 6 sblock10441 TGTCTTGCAGGCCGTCATG #rat_gr1082470_libT3S2 19 4 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT3S1 21 4 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT3S1 18 3 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT5S2 18 3 sblock10441 TGTCTTGCAGGCCGTCATGCAG #rat_gr1082473_libT1S2 22 3 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT4S1 18 2 sblock10441 TGTCTTGCAGGCCGTCATG #rat_gr1082470_libT4S1 19 2 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT5S2 20 2 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT4S1 21 2 sblock10441 TGTCTTGCAGGCCGTCATGCAG #rat_gr1082473_libT1S1 22 2 sblock10441 GTCTTGCAGGCCGTCATGCA #rat_gr642400_libT1S1 20 2 sblock10441 GTCTTGCAGGCCGTCATGCA #rat_gr642400_libT1S2 20 2 sblock10441 GTGTCTTGCAGGCCGTCATGC #rat_gr654050_libT1S2 21 1 sblock10441 TGTCTTGCAGGCCGTCAT #rat_gr1082469_libT2S1 18 1 sblock10441 TGTCTTGCAGGCCGTCATG #rat_gr1082470_libT3S1 19 1 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT2S1 20 1 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT3S1 20 1 sblock10441 TGTCTTGCAGGCCGTCATGC #rat_gr1082471_libT4S1 20 1 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libMirbase_rno-miR-431 21 1 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT4S2 21 1 sblock10441 TGTCTTGCAGGCCGTCATGCA #rat_gr1082472_libT5S1 21 1 sblock10441 TGTCTTGCAGGCCGTCATGCAG #rat_gr1082473_libT3S2 22 1 sblock10441 TGTCTTGCAGGCCGTCATGCAGG #rat_gr1082474_libT1S2 23 1 sblock10441 GTCTTGCAGGCCGTCATG #rat_gr642399_libT1S1 18 1 sblock10441 GTCTTGCAGGCCGTCATGCA #rat_gr642400_libT3S2 20 1 sblock10441 CAGGTCGTCTTGCAGGGC #rat_gr300932_libT1S1 18 66 sblock10441 CAGGTCGTCTTGCAGGGCTTCTC #rat_gr300937_libT1S1 23 62 sblock10441 CAGGTCGTCTTGCAGGGC #rat_gr300932_libT1S2 18 58 sblock10441 CAGGTCGTCTTGCAGGGCTTCTC #rat_gr300937_libT1S2 23 47 sblock10441 CAGGTCGTCTTGCAGGGCTTC #rat_gr300935_libT1S1 21 41 sblock10441 CAGGTCGTCTTGCAGGGCTTC #rat_gr300935_libT1S2 21 36 sblock10441 CAGGTCGTCTTGCAGGGCT #rat_gr300933_libT1S2 19 30 sblock10441 TGCAGGTCGTCTTGCAGGG #rat_gr962064_libT1S1 19 25 sblock10441 TTGCAGGTCGTCTTGCAGG #rat_gr1135369_libT1S1 19 18 sblock10441 CAGGTCGTCTTGCAGGGCT #rat_gr300933_libT1S1 19 17 sblock10441 TGCAGGTCGTCTTGCAGG #rat_gr962063_libT1S1 18 12 sblock10441 TTGCAGGTCGTCTTGCAGGGC #rat_gr1135371_libT1S1 21 11 sblock10441 CAGGTCGTCTTGCAGGGCTTCT #rat_gr300936_libT1S1 22 11 sblock10441 TTGCAGGTCGTCTTGCAGG #rat_gr1135369_libT1S2 19 10 sblock10441 TGCAGGTCGTCTTGCAGGGC #rat_gr962065_libT1S2 20 10 sblock10441 CAGGTCGTCTTGCAGGGCTT #rat_gr300934_libT1S1 20 10 sblock10441 TGCAGGTCGTCTTGCAGG #rat_gr962063_libT1S2 18 6 sblock10441 TGCAGGTCGTCTTGCAGGG #rat_gr962064_libT1S2 19 5 sblock10441 TGCAGGTCGTCTTGCAGGGC #rat_gr962065_libT1S1 20 5 sblock10441 TGCAGGTCGTCTTGCAGGGCTTCTC #rat_gr962070_libT1S1 25 5 sblock10441 CAGGTCGTCTTGCAGGGCTT #rat_gr300934_libT1S2 20 5 sblock10441 TTGCAGGTCGTCTTGCAGGGC #rat_gr1135371_libT1S2 21 4 sblock10441 TTGCAGGTCGTCTTGCAGGGCT #rat_gr1135372_libT1S1 22 4 sblock10441 TGCAGGTCGTCTTGCAGGGCTTC #rat_gr962068_libT1S1 23 4 sblock10441 TTGCAGGTCGTCTTGCAG #rat_gr1135368_libT1S2 18 3 sblock10441 TTGCAGGTCGTCTTGCAGGGCTT #rat_gr1135373_libT1S2 23 3 sblock10441 TGCAGGTCGTCTTGCAGGGCT #rat_gr962066_libT1S1 21 3 sblock10441 TGCAGGTCGTCTTGCAGGGCT #rat_gr962066_libT1S2 21 3 sblock10441 CAGGTCGTCTTGCAGGGCTTCT #rat_gr300936_libT1S2 22 3 sblock10441 TTGCAGGTCGTCTTGCAGGGCT #rat_gr1135372_libT1S2 22 2 sblock10441 TTGCAGGTCGTCTTGCAGGGCTT #rat_gr1135373_libT1S1 23 2 sblock10441 TTGCAGGTCGTCTTGCAGGGCTTCTC #rat_gr1135374_libT1S1 26 2 sblock10441 TGCAGGTCGTCTTGCAGGGCTT #rat_gr962067_libT1S1 22 2 sblock10441 TGCAGGTCGTCTTGCAGGGCTT #rat_gr962067_libT1S2 22 2 sblock10441 TCATGCAGGCCACACTGAC #rat_gr824012_libT1S2 19 1 sblock10441 ATGCAGGCCACACTGACG #rat_gr229265_libT1S2 18 1 sblock10441 AGGCCACACTGACGGTAAC #rat_gr178977_libT1S2 19 1 sblock10441 ACTGACGGTAACGTTGCAGGTC #rat_gr121640_libT1S1 22 1 sblock10441 ACGTTGCAGGTCGTCTTGCAG #rat_gr114174_libT1S2 21 1 sblock10441 TTGCAGGTCGTCTTGCAGGG #rat_gr1135370_libT1S2 20 1 sblock10441 TTGCAGGTCGTCTTGCAGGGC #rat_gr1135371_libT2S1 21 1 sblock10441 TGCAGGTCGTCTTGCAGGG #rat_gr962064_libT4S1 19 1 sblock10441 TGCAGGTCGTCTTGCAGGGCTTC #rat_gr962068_libT1S2 23 1 sblock10441 TGCAGGTCGTCTTGCAGGGCTTCT #rat_gr962069_libT1S1 24 1 sblock10441 GCAGGTCGTCTTGCAGGGC #rat_gr535745_libT1S1 19 1 sblock10441 CAGGTCGTCTTGCAGGGC #rat_gr300932_libT3S1 18 1 sblock10441 CAGGTCGTCTTGCAGGGCT #rat_gr300933_libT5S2 19 1 sblock10441 CAGGTCGTCTTGCAGGGCTT #rat_gr300934_libT2S1 20 1 sblock10441 CAGGTCGTCTTGCAGGGCTTC #rat_gr300935_libT3S1 21 1 sblock10441 CAGGTCGTCTTGCAGGGCTTCTC #rat_gr300937_libT4S1 23 1 sblock10441 CAGGTCGTCTTGCAGGGCTTCTC #rat_gr300937_libT4S2 23 1 sblock10441 TCGCAAGACGACATCTTCA #rat_gr888786_libT1S1 19 4 sblock10441 TCGCAAGACGACATCTTC #rat_gr888785_libT1S1 18 2 sblock10441 TCGCAAGACGACATCTTCA #rat_gr888786_libT1S2 19 2 sblock10441 TCGCAAGACGACATCTTCATC #rat_gr888787_libT1S2 21 1 sblock10441 tcctgcgcgtcctgcgaggTGTCTTGCAGGCCGTCATGCAggccacactgacggtaacgttgCAGGTCGTCTTGCAGGGCTTCTCgcaagacgacatcttcatcgccaacgacg ****************************************************************************************************************** sblock10441 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054606 ENSRNOG00000036498 rno-mir-431 sblock10441 ..((((((((((((((((....))))))))((((((((.......)).))))))..))).)))))((((((((((..(....)..)))))))))).......(((....))).. 1.000 -45.80 # #sblock10441 chromosome:6:134182307:134182420:1 Same_strand|Exonic_non-coding|ENSRNOT00000054606|ENSRNOG00000036498 ## ENSRNOG00000036498|miRNA|rno-mir-431|rno-mir-431 [Source:miRBase;Acc:MI0001722] ## {MIR: rno-mir-431} ========== sblock10445 (miRBase rno-mir-136) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10445: 0.001 randfold humanZ24p82_sblock10445: 0.001 randfold mouseZ40p82_sblock10445: 0.001 #forester humanZ24p82_sblock10445: 0.972088 forester mouseZ40p82_sblock10445: 1 #identity: 97.12 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT1S1 19 4596 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT1S2 19 2901 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT1S1 22 2097 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT1S1 21 1677 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT1S1 20 1139 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT1S2 21 946 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT1S2 20 847 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT1S2 22 779 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT1S1 18 351 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT1S1 22 346 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT1S2 22 287 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT1S2 18 223 sblock10445 GGACTCCATTTGTTTTGATGA #rat_gr586161_libT1S1 21 221 sblock10445 GGACTCCATTTGTTTTGATGA #rat_gr586161_libT1S2 21 186 sblock10445 GGACTCCATTTGTTTTGA #rat_gr586156_libT1S1 18 109 sblock10445 ACTCCATTTGTTTTGATGATGGA #rat_gr118572_libT1S1 23 100 sblock10445 GGACTCCATTTGTTTTGA #rat_gr586156_libT1S2 18 83 sblock10445 AGGACTCCATTTGTTTTGATGAT #rat_gr172491_libT1S1 23 74 sblock10445 GGACTCCATTTGTTTTGAT #rat_gr586159_libT1S1 19 59 sblock10445 GGACTCCATTTGTTTTGAT #rat_gr586159_libT1S2 19 53 sblock10445 AGGACTCCATTTGTTTTGATGA #rat_gr172490_libT1S1 22 50 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT3S2 19 48 sblock10445 AGGACTCCATTTGTTTTGATGA #rat_gr172490_libT1S2 22 47 sblock10445 AGGACTCCATTTGTTTTGATGAT #rat_gr172491_libT1S2 23 41 sblock10445 ACTCCATTTGTTTTGATGATGGA #rat_gr118572_libT1S2 23 36 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT2S1 19 31 sblock10445 GGACTCCATTTGTTTTGATG #rat_gr586160_libT1S1 20 28 sblock10445 GACTCCATTTGTTTTGATGAT #rat_gr500136_libT1S2 21 27 sblock10445 AGGACTCCATTTGTTTTG #rat_gr172483_libT1S2 18 26 sblock10445 GACTCCATTTGTTTTGATGAT #rat_gr500136_libT1S1 21 25 sblock10445 AGGACTCCATTTGTTTTG #rat_gr172483_libT1S1 18 24 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT3S1 19 24 sblock10445 ACTCCATTTGTTTTGATGATGGAT #rat_gr118573_libT1S1 24 24 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT2S1 20 22 sblock10445 AGGACTCCATTTGTTTTGA #rat_gr172484_libT1S1 19 20 sblock10445 GGACTCCATTTGTTTTGATG #rat_gr586160_libT1S2 20 19 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT2S1 21 18 sblock10445 CTCCATTTGTTTTGATGATG #rat_gr422089_libT1S1 20 17 sblock10445 GACTCCATTTGTTTTGATGA #rat_gr500135_libT1S1 20 16 sblock10445 GACTCCATTTGTTTTGATGA #rat_gr500135_libT1S2 20 16 sblock10445 CTCCATTTGTTTTGATGATGG #rat_gr422090_libT1S1 21 16 sblock10445 AGGACTCCATTTGTTTTGA #rat_gr172484_libT1S2 19 15 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT3S2 21 14 sblock10445 CTCCATTTGTTTTGATGA #rat_gr422086_libT1S1 18 13 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT5S2 19 12 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT3S1 20 12 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT2S1 22 12 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT5S2 22 12 sblock10445 CTCCATTTGTTTTGATGA #rat_gr422086_libT1S2 18 12 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT4S1 19 11 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT5S1 19 11 sblock10445 CTCCATTTGTTTTGATGAT #rat_gr422087_libT1S1 19 11 sblock10445 AGGACTCCATTTGTTTTGAT #rat_gr172488_libT1S1 20 10 sblock10445 GACTCCATTTGTTTTGAT #rat_gr500133_libT1S2 18 10 sblock10445 ACTCCATTTGTTTTGATGATGGATT #rat_gr118574_libT1S1 25 10 sblock10445 AGGACTCCATTTGTTTTGAT #rat_gr172488_libT1S2 20 9 sblock10445 GACTCCATTTGTTTTGATGATG #rat_gr500137_libT1S1 22 9 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT2S2 19 9 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT4S1 20 9 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT5S2 20 9 sblock10445 AGGACTCCATTTGTTTTGATG #rat_gr172489_libT1S2 21 8 sblock10445 ACTCCATTTGTTTTGATGA #rat_gr118568_libT4S2 19 8 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT3S2 20 8 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT3S1 21 8 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT4S1 21 8 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT3S2 22 8 sblock10445 AGGACTCCATTTGTTTTGATG #rat_gr172489_libT1S1 21 7 sblock10445 GACTCCATTTGTTTTGATGATGG #rat_gr500138_libT1S1 23 7 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT3S1 22 7 sblock10445 ACTCCATTTGTTTTGATGATGGAT #rat_gr118573_libT1S2 24 7 sblock10445 GACTCCATTTGTTTTGAT #rat_gr500133_libT1S1 18 6 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT3S2 18 6 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT5S2 21 6 sblock10445 CTCCATTTGTTTTGATGAT #rat_gr422087_libT1S2 19 6 sblock10445 CTCCATTTGTTTTGATGATG #rat_gr422089_libT1S2 20 6 sblock10445 GGACTCCATTTGTTTTGATGATG #rat_gr586163_libT1S2 23 5 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT2S2 20 5 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT4S2 22 5 sblock10445 CTCCATTTGTTTTGATGATGG #rat_gr422090_libT1S2 21 5 sblock10445 GACTCCATTTGTTTTGATGATGG #rat_gr500138_libT1S2 23 4 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT4S2 21 4 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT5S1 21 4 sblock10445 ACTCCATTTGTTTTGATGATGGATT #rat_gr118574_libT1S2 25 4 sblock10445 GGACTCCATTTGTTTTGATGATG #rat_gr586163_libT1S1 23 3 sblock10445 GACTCCATTTGTTTTGATG #rat_gr500134_libT1S2 19 3 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT3S1 18 3 sblock10445 ACTCCATTTGTTTTGATGATG #rat_gr118570_libT2S2 21 3 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT2S2 22 3 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT4S1 22 3 sblock10445 ACTCCATTTGTTTTGATGATGG #rat_gr118571_libT5S1 22 3 sblock10445 GGACTCCATTTGTTTTGA #rat_gr586156_libT3S1 18 2 sblock10445 GGACTCCATTTGTTTTGAT #rat_gr586159_libT3S1 19 2 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT2S1 22 2 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT3S2 22 2 sblock10445 GACTCCATTTGTTTTGATG #rat_gr500134_libT1S1 19 2 sblock10445 GACTCCATTTGTTTTGATGATG #rat_gr500137_libT1S2 22 2 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT5S1 20 2 sblock10445 AGGACTCCATTTGTTTTGATGAT #rat_gr172491_libT5S1 23 1 sblock10445 AGGACTCCATTTGTTTTGATGAT #rat_gr172491_libT5S2 23 1 sblock10445 AGGACTCCATTTGTTTTGATGATG #rat_gr172492_libT1S1 24 1 sblock10445 AGGACTCCATTTGTTTTGATGATG #rat_gr172492_libT1S2 24 1 sblock10445 GGACTCCATTTGTTTTGAT #rat_gr586159_libT5S2 19 1 sblock10445 GGACTCCATTTGTTTTGATG #rat_gr586160_libT3S1 20 1 sblock10445 GGACTCCATTTGTTTTGATGA #rat_gr586161_libT2S1 21 1 sblock10445 GGACTCCATTTGTTTTGATGA #rat_gr586161_libT2S2 21 1 sblock10445 GGACTCCATTTGTTTTGATGA #rat_gr586161_libT4S2 21 1 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT3S1 22 1 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT4S2 22 1 sblock10445 GGACTCCATTTGTTTTGATGAT #rat_gr586162_libT5S1 22 1 sblock10445 GGACTCCATTTGTTTTGATGATGG #rat_gr586164_libT1S1 24 1 sblock10445 GGACTCCATTTGTTTTGATGATGG #rat_gr586164_libT1S2 24 1 sblock10445 GACTCCATTTGTTTTGAT #rat_gr500133_libT5S2 18 1 sblock10445 GACTCCATTTGTTTTGATGA #rat_gr500135_libT5S2 20 1 sblock10445 GACTCCATTTGTTTTGATGAT #rat_gr500136_libT2S1 21 1 sblock10445 GACTCCATTTGTTTTGATGAT #rat_gr500136_libT4S2 21 1 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT2S1 18 1 sblock10445 ACTCCATTTGTTTTGATG #rat_gr118567_libT5S2 18 1 sblock10445 ACTCCATTTGTTTTGATGAT #rat_gr118569_libT4S2 20 1 sblock10445 ACTCCATTTGTTTTGATGATGGA #rat_gr118572_libMirbase_rno-miR-136 23 1 sblock10445 ACTCCATTTGTTTTGATGATGGA #rat_gr118572_libT2S1 23 1 sblock10445 ACTCCATTTGTTTTGATGATGGAT #rat_gr118573_libT4S2 24 1 sblock10445 ACTCCATTTGTTTTGATGATGGATTC #rat_gr118575_libT1S1 26 1 sblock10445 CTCCATTTGTTTTGATGA #rat_gr422086_libT2S1 18 1 sblock10445 CTCCATTTGTTTTGATGATG #rat_gr422089_libT5S1 20 1 sblock10445 CTCCATTTGTTTTGATGATGG #rat_gr422090_libT5S2 21 1 sblock10445 CTCCATTTGTTTTGATGATGGA #rat_gr422091_libT1S1 22 1 sblock10445 CTCCATTTGTTTTGATGATGGA #rat_gr422091_libT1S2 22 1 sblock10445 TCCATTTGTTTTGATGATGG #rat_gr836295_libT1S1 20 1 sblock10445 CCATTTGTTTTGATGATGG #rat_gr338902_libT1S1 19 1 sblock10445 CCATTTGTTTTGATGATGG #rat_gr338902_libT1S2 19 1 sblock10445 CCATTTGTTTTGATGATGGA #rat_gr338903_libT1S1 20 1 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT1S1 22 197 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT1S2 22 160 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT1S1 21 155 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT1S2 21 115 sblock10445 TCATCGTCTCAAATGAGTCTTC #rat_gr823503_libT1S2 22 113 sblock10445 TCATCGTCTCAAATGAGTCTTC #rat_gr823503_libT1S1 22 106 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT1S2 19 82 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT1S1 19 80 sblock10445 CATCGTCTCAAATGAGTCTTC #rat_gr310453_libT1S1 21 74 sblock10445 CATCATCGTCTCAAATGA #rat_gr309288_libT1S1 18 73 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT1S1 22 65 sblock10445 CATCGTCTCAAATGAGTCTTC #rat_gr310453_libT1S2 21 64 sblock10445 TCATCGTCTCAAATGAGTC #rat_gr823500_libT1S1 19 60 sblock10445 TCATCGTCTCAAATGAGTCT #rat_gr823501_libT1S2 20 60 sblock10445 ATCATCGTCTCAAATGAG #rat_gr217337_libT1S2 18 59 sblock10445 CATCATCGTCTCAAATGA #rat_gr309288_libT1S2 18 58 sblock10445 ATCATCGTCTCAAATGAG #rat_gr217337_libT1S1 18 53 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT1S2 22 50 sblock10445 TCATCGTCTCAAATGAGTCT #rat_gr823501_libT1S1 20 45 sblock10445 TCATCGTCTCAAATGAGTC #rat_gr823500_libT1S2 19 44 sblock10445 CATCGTCTCAAATGAGTC #rat_gr310450_libT1S1 18 43 sblock10445 CATCATCGTCTCAAATGAGTC #rat_gr309291_libT1S1 21 41 sblock10445 CATCGTCTCAAATGAGTCT #rat_gr310451_libT1S1 19 41 sblock10445 ATCATCGTCTCAAATGAGTC #rat_gr217339_libT1S2 20 39 sblock10445 CATCATCGTCTCAAATGAGTC #rat_gr309291_libT1S2 21 34 sblock10445 CATCGTCTCAAATGAGTC #rat_gr310450_libT1S2 18 31 sblock10445 ATCATCGTCTCAAATGAGTCTTC #rat_gr217342_libT1S1 23 28 sblock10445 ATCATCGTCTCAAATGAGTC #rat_gr217339_libT1S1 20 27 sblock10445 ATCGTCTCAAATGAGTCTTC #rat_gr223139_libT1S1 20 27 sblock10445 CATCGTCTCAAATGAGTCT #rat_gr310451_libT1S2 19 26 sblock10445 ATCGTCTCAAATGAGTCTTC #rat_gr223139_libT1S2 20 20 sblock10445 ATCATCGTCTCAAATGAGTCTTC #rat_gr217342_libT1S2 23 19 sblock10445 TCATCGTCTCAAATGAGTCTT #rat_gr823502_libT1S1 21 16 sblock10445 TCATCGTCTCAAATGAGTCTTCA #rat_gr823504_libT1S1 23 15 sblock10445 CATCATCGTCTCAAATGAGT #rat_gr309290_libT1S1 20 13 sblock10445 ATCATCGTCTCAAATGAGT #rat_gr217338_libT1S1 19 13 sblock10445 TCATCGTCTCAAATGAGTCTTCA #rat_gr823504_libT1S2 23 13 sblock10445 TCATCGTCTCAAATGAGT #rat_gr823499_libT1S1 18 12 sblock10445 CATCATCGTCTCAAATGAGT #rat_gr309290_libT1S2 20 9 sblock10445 TCATCGTCTCAAATGAGTCTT #rat_gr823502_libT1S2 21 9 sblock10445 TCATCGTCTCAAATGAGT #rat_gr823499_libT1S2 18 7 sblock10445 ATCGTCTCAAATGAGTCTTCA #rat_gr223140_libT1S2 21 7 sblock10445 CATCGTCTCAAATGAGTCTT #rat_gr310452_libT1S2 20 6 sblock10445 ATCGTCTCAAATGAGTCTTCA #rat_gr223140_libT1S1 21 6 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT5S2 22 5 sblock10445 ATCATCGTCTCAAATGAGTCTT #rat_gr217341_libT1S2 22 5 sblock10445 CATCGTCTCAAATGAGTCTT #rat_gr310452_libT1S1 20 5 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT5S2 21 4 sblock10445 ATCATCGTCTCAAATGAGTCTT #rat_gr217341_libT1S1 22 4 sblock10445 ATCGTCTCAAATGAGTCT #rat_gr223137_libT1S1 18 4 sblock10445 ATCGTCTCAAATGAGTCT #rat_gr223137_libT1S2 18 4 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT4S1 22 3 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT3S2 21 3 sblock10445 TCATCGTCTCAAATGAGTCT #rat_gr823501_libT5S2 20 3 sblock10445 ATCGTCTCAAATGAGTCTT #rat_gr223138_libT1S2 19 3 sblock10445 CATCATCGTCTCAAATGA #rat_gr309288_libT2S1 18 2 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT2S2 19 2 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT3S2 19 2 sblock10445 CATCATCGTCTCAAATGAGTC #rat_gr309291_libT3S1 21 2 sblock10445 CATCATCGTCTCAAATGAGTC #rat_gr309291_libT3S2 21 2 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT3S1 22 2 sblock10445 CATCATCGTCTCAAATGAGTCTTC #rat_gr309293_libT1S1 24 2 sblock10445 CATCATCGTCTCAAATGAGTCTTC #rat_gr309293_libT1S2 24 2 sblock10445 ATCATCGTCTCAAATGAGT #rat_gr217338_libT1S2 19 2 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT4S2 21 2 sblock10445 CATCGTCTCAAATGAGTCT #rat_gr310451_libT3S2 19 2 sblock10445 CATCATCGTCTCAAATGA #rat_gr309288_libT2S2 18 1 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT2S1 19 1 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT3S1 19 1 sblock10445 CATCATCGTCTCAAATGAG #rat_gr309289_libT5S2 19 1 sblock10445 CATCATCGTCTCAAATGAGT #rat_gr309290_libT2S2 20 1 sblock10445 CATCATCGTCTCAAATGAGT #rat_gr309290_libT4S1 20 1 sblock10445 CATCATCGTCTCAAATGAGTC #rat_gr309291_libT4S1 21 1 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libMirbase_rno-miR-136* 22 1 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT3S2 22 1 sblock10445 CATCATCGTCTCAAATGAGTCT #rat_gr309292_libT5S1 22 1 sblock10445 ATCATCGTCTCAAATGAG #rat_gr217337_libT2S2 18 1 sblock10445 ATCATCGTCTCAAATGAG #rat_gr217337_libT5S2 18 1 sblock10445 ATCATCGTCTCAAATGAGTC #rat_gr217339_libT4S1 20 1 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT2S1 21 1 sblock10445 ATCATCGTCTCAAATGAGTCT #rat_gr217340_libT3S1 21 1 sblock10445 ATCATCGTCTCAAATGAGTCTTC #rat_gr217342_libT3S2 23 1 sblock10445 ATCATCGTCTCAAATGAGTCTTCA #rat_gr217343_libT1S2 24 1 sblock10445 TCATCGTCTCAAATGAGTCT #rat_gr823501_libT2S1 20 1 sblock10445 TCATCGTCTCAAATGAGTCTTC #rat_gr823503_libT2S2 22 1 sblock10445 TCATCGTCTCAAATGAGTCTTC #rat_gr823503_libT4S1 22 1 sblock10445 CATCGTCTCAAATGAGTC #rat_gr310450_libT3S2 18 1 sblock10445 CATCGTCTCAAATGAGTCTT #rat_gr310452_libT3S1 20 1 sblock10445 CATCGTCTCAAATGAGTCTTC #rat_gr310453_libT2S1 21 1 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT2S1 22 1 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT3S2 22 1 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT4S1 22 1 sblock10445 CATCGTCTCAAATGAGTCTTCA #rat_gr310454_libT4S2 22 1 sblock10445 ATCGTCTCAAATGAGTCTTC #rat_gr223139_libT4S1 20 1 sblock10445 ATCGTCTCAAATGAGTCTTC #rat_gr223139_libT4S2 20 1 sblock10445 ATCGTCTCAAATGAGTCTTC #rat_gr223139_libT5S2 20 1 sblock10445 ATCGTCTCAAATGAGTCTTCA #rat_gr223140_libT4S2 21 1 sblock10445 ----------------TGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCT------------------ humanZ24p82 CCTCGGTGGTGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTATGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATTTCGTCGGATGG- mouseZ40p82 -TTCAACGGTGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATGTCGTCGGTTGGA ******************************************* ************************************** sblock10445 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054601 ENSRNOG00000036493 rno-mir-136 sblock10445 .((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))). 1.000 -45.80 # humanZ24p82 ..(((..((.....(((((((((((.(((((((.((((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))...))..))).... 0.999 -52.40 # mouseZ40p82 ((((((((((...(((((((((((.(((((((.((((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))....))))).))))) 0.999 -53.20 # #sblock10445 chromosome:6:134186977:134187058:1 Same_strand|Boundary_non-coding|ENSRNOT00000054601|ENSRNOG00000036493 ## Same_strand|Exonic_non-coding|ENSRNOT00000054601|ENSRNOG00000036493 ## ENSRNOG00000036493|miRNA|rno-mir-136|rno-mir-136 [Source:miRBase;Acc:MI0000909] ## {MIR: rno-mir-136} #humanZ24p82 chromosome:14:100420776:100420890:1 Same_strand|Boundary_non-coding|ENST00000385207|ENSG00000207942|miRNA|hsa-mir-136 [Source:miRBase;Acc:MI0000475] ## {MIR: hsa-mir-136} #mouseZ40p82 chromosome:12:110833512:110833626:1 Opposite_strand|Boundary_non-coding|ENSMUST00000118502|ENSMUSG00000081425|protein_coding|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q7M732] ## Same_strand|Boundary_non-coding|ENSMUST00000093621|ENSMUSG00000070129|miRNA|mmu-mir-136 [Source:miRBase;Acc:MI0000162] ## {MIR: mmu-mir-136} ========== sblock10492 (miRBase rno-mir-323) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH] ========== #randfold sblock10492: 0.003 randfold humanZ38p82_sblock10492: 0.001 randfold mouseZ54p82_sblock10492: 0.002 #forester humanZ38p82_sblock10492: 0.980943 forester mouseZ54p82_sblock10492: 1 #identity: 98.85 sblock10492 AGGTGGTCCGTGGCGCGTTC #rat_gr192729_libT1S1 20 30 sblock10492 AGGTGGTCCGTGGCGCGTTC #rat_gr192729_libT1S2 20 27 sblock10492 AGGTGGTCCGTGGCGCGT #rat_gr192727_libT1S1 18 17 sblock10492 AGGTGGTCCGTGGCGCGTTCG #rat_gr192730_libT1S2 21 14 sblock10492 AGGTGGTCCGTGGCGCGTTCGC #rat_gr192731_libT1S1 22 13 sblock10492 AGGTGGTCCGTGGCGCGTTCGC #rat_gr192731_libT1S2 22 11 sblock10492 AGGTGGTCCGTGGCGCGT #rat_gr192727_libT1S2 18 9 sblock10492 AGGTGGTCCGTGGCGCGTTCG #rat_gr192730_libT1S1 21 6 sblock10492 AGGTGGTCCGTGGCGCGTT #rat_gr192728_libT1S1 19 2 sblock10492 AGGTGGTCCGTGGCGCGTT #rat_gr192728_libT1S2 19 1 sblock10492 AGGTGGTCCGTGGCGCGTTCGC #rat_gr192731_libMirbase_rno-miR-323* 22 1 sblock10492 GGCGCGTTCGCTTCATTTA #rat_gr597741_libT1S2 19 1 sblock10492 GCGTTCGCTTCATTTATG #rat_gr565852_libT1S1 18 1 sblock10492 GCGTTCGCTTCATTTATGGCGCACA #rat_gr565853_libT1S2 25 1 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT1S1 22 2846 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT1S2 22 2177 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT1S1 19 2089 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT1S1 21 2018 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT1S1 18 2012 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT1S2 20 1963 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT1S1 21 1890 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT1S1 20 1711 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT1S2 21 1704 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT1S2 19 1510 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT1S2 18 1449 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT1S2 21 1437 sblock10492 GCACATTACACGGTCGAC #rat_gr529573_libT1S1 18 477 sblock10492 GCACATTACACGGTCGAC #rat_gr529573_libT1S2 18 470 sblock10492 GCACATTACACGGTCGACCT #rat_gr529575_libT1S1 20 262 sblock10492 CACATTACACGGTCGACCT #rat_gr279498_libT1S2 19 260 sblock10492 GCACATTACACGGTCGACCT #rat_gr529575_libT1S2 20 230 sblock10492 CACATTACACGGTCGACCT #rat_gr279498_libT1S1 19 220 sblock10492 GCACATTACACGGTCGACCTCTT #rat_gr529578_libT1S2 23 31 sblock10492 GCACATTACACGGTCGACCTCTT #rat_gr529578_libT1S1 23 29 sblock10492 CACATTACACGGTCGACCTCTT #rat_gr279501_libT1S1 22 19 sblock10492 CACATTACACGGTCGACCTCTT #rat_gr279501_libT1S2 22 17 sblock10492 CGCACATTACACGGTCGACCTCT #rat_gr391714_libT1S1 23 16 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT5S2 22 16 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT4S2 22 12 sblock10492 CGCACATTACACGGTCGACC #rat_gr391711_libT1S1 20 11 sblock10492 CGCACATTACACGGTCGACCTC #rat_gr391713_libT1S2 22 11 sblock10492 CGCACATTACACGGTCGACCTC #rat_gr391713_libT1S1 22 10 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT4S1 21 10 sblock10492 CGCACATTACACGGTCGAC #rat_gr391710_libT1S1 19 8 sblock10492 CGCACATTACACGGTCGACCTCT #rat_gr391714_libT1S2 23 8 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT5S1 22 8 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT5S1 21 8 sblock10492 CGCACATTACACGGTCGACC #rat_gr391711_libT1S2 20 7 sblock10492 GCACATTACACGGTCGAC #rat_gr529573_libT4S2 18 7 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT4S1 19 7 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT4S1 22 7 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT3S1 19 6 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT5S2 19 6 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT5S1 21 6 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT5S1 18 6 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT5S2 21 6 sblock10492 CACATTACACGGTCGACCTCTTT #rat_gr279502_libT1S1 23 6 sblock10492 ACATTACACGGTCGACCTCT #rat_gr85055_libT1S1 20 6 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT4S2 19 5 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT4S1 21 5 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT3S1 22 5 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT2S2 21 4 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT4S2 21 4 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT2S1 22 4 sblock10492 GCACATTACACGGTCGACCTCTTT #rat_gr529579_libT1S1 24 4 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT4S2 18 4 sblock10492 ACATTACACGGTCGACCTC #rat_gr85054_libT1S2 19 4 sblock10492 CGCACATTACACGGTCGA #rat_gr391709_libT1S2 18 3 sblock10492 CGCACATTACACGGTCGAC #rat_gr391710_libT1S2 19 3 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT2S1 19 3 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT2S2 22 3 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT4S1 18 3 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT2S1 21 3 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT2S2 21 3 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT3S2 21 3 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libT4S2 21 3 sblock10492 CATTACACGGTCGACCTCT #rat_gr313981_libT1S2 19 3 sblock10492 CGCACATTACACGGTCGACCT #rat_gr391712_libT1S1 21 2 sblock10492 GCACATTACACGGTCGAC #rat_gr529573_libT3S2 18 2 sblock10492 GCACATTACACGGTCGAC #rat_gr529573_libT4S1 18 2 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT2S2 19 2 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT3S2 19 2 sblock10492 GCACATTACACGGTCGACC #rat_gr529574_libT5S1 19 2 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT2S1 21 2 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT3S2 21 2 sblock10492 GCACATTACACGGTCGACCTCT #rat_gr529577_libT3S2 22 2 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT5S2 18 2 sblock10492 CACATTACACGGTCGACCT #rat_gr279498_libT4S2 19 2 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT2S1 20 2 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT5S1 20 2 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT5S2 20 2 sblock10492 ACATTACACGGTCGACCTC #rat_gr85054_libT1S1 19 2 sblock10492 CATTACACGGTCGACCTC #rat_gr313980_libT1S1 18 2 sblock10492 ATGGCGCACATTACACGG #rat_gr233827_libT1S2 18 1 sblock10492 CGCACATTACACGGTCGA #rat_gr391709_libT1S1 18 1 sblock10492 CGCACATTACACGGTCGACCTCTT #rat_gr391715_libT1S1 24 1 sblock10492 GCACATTACACGGTCGACCT #rat_gr529575_libT3S1 20 1 sblock10492 GCACATTACACGGTCGACCT #rat_gr529575_libT4S1 20 1 sblock10492 GCACATTACACGGTCGACCT #rat_gr529575_libT5S2 20 1 sblock10492 GCACATTACACGGTCGACCTC #rat_gr529576_libT3S1 21 1 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT2S1 18 1 sblock10492 CACATTACACGGTCGACC #rat_gr279497_libT3S1 18 1 sblock10492 CACATTACACGGTCGACCT #rat_gr279498_libT4S1 19 1 sblock10492 CACATTACACGGTCGACCT #rat_gr279498_libT5S1 19 1 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT2S2 20 1 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT4S1 20 1 sblock10492 CACATTACACGGTCGACCTC #rat_gr279499_libT4S2 20 1 sblock10492 CACATTACACGGTCGACCTCT #rat_gr279500_libMirbase_rno-miR-323 21 1 sblock10492 CACATTACACGGTCGACCTCTT #rat_gr279501_libT4S1 22 1 sblock10492 CACATTACACGGTCGACCTCTTT #rat_gr279502_libT4S2 23 1 sblock10492 ACATTACACGGTCGACCT #rat_gr85053_libT1S1 18 1 sblock10492 CATTACACGGTCGACCTCT #rat_gr313981_libT1S1 19 1 sblock10492 ATTACACGGTCGACCTCT #rat_gr239878_libT1S2 18 1 sblock10492 TTGGTACTTGGAGAGAGGTGGTCCGTGGCGCGTTCGCTTCATTTATGGCGCACATTACACGGTCGACCTCTTTGCGGTATCTAATC humanZ38p82 -------------AGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCT--------------- mouseZ54p82 -------------AGAGGTGGTCCGTGGCGCGTTCGCTTCATTTATGGCGCACATTACACGGTCGACCTCT--------------- ************************** ******************************* sblock10492 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053577 ENSRNOG00000035454 rno-mir-323 sblock10492 ..((((((.(.((((((((.(.(((((....((.((((........)))).))....))))).).)))))))).)))))))..... 1.000 -37.00 # humanZ38p82 ((((((((.(((((....((.((((........)))).))....))))))).)))))) 0.999 -23.10 # mouseZ54p82 ((((((((.(((((....((.((((........)))).))....))))))).)))))) 0.999 -23.10 # #sblock10492 chromosome:6:134391697:134391782:1 Same_strand|Boundary_non-coding|ENSRNOT00000053577|ENSRNOG00000035454 ## Same_strand|Exonic_non-coding|ENSRNOT00000053577|ENSRNOG00000035454 ## ENSRNOG00000035454|miRNA|rno-mir-323|rno-mir-323 [Source:miRBase;Acc:MI0000591] ## {MIR: rno-mir-323} #humanZ38p82 chromosome:14:100561802:100561927:1 Same_strand|Boundary_non-coding|ENST00000362199|ENSG00000199069|miRNA|hsa-mir-323 [Source:miRBase;Acc:MI0000807] ## {MIR: hsa-mir-323} #mouseZ54p82 chromosome:12:110950698:110950823:1 Same_strand|Boundary_non-coding|ENSMUST00000083683|ENSMUSG00000065617|miRNA|mmu-mir-323 [Source:miRBase;Acc:MI0000592] ## {MIR: mmu-mir-323} ========== sblock10502 (miRBase rno-mir-376c) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10502: 0.001 randfold humanZ5p83_sblock10502: 0.001 randfold mouseZ8p83_sblock10502: 0.002 #forester humanZ5p83_sblock10502: 0.928041 forester mouseZ8p83_sblock10502: 0.89452 #identity: 93.59 sblock10502 GTGGATATTCCTTCTATG #rat_gr649955_libT1S1 18 92 sblock10502 GTGGATATTCCTTCTATG #rat_gr649955_libT1S2 18 68 sblock10502 GTGGATATTCCTTCTATGT #rat_gr649962_libT1S1 19 11 sblock10502 GTGGATATTCCTTCTATGT #rat_gr649962_libT1S2 19 9 sblock10502 GTGGATATTCCTTCTATGTTT #rat_gr649964_libT1S1 21 7 sblock10502 GTGGATATTCCTTCTATGTT #rat_gr649963_libT1S1 20 6 sblock10502 GTGGATATTCCTTCTATGTT #rat_gr649963_libT1S2 20 6 sblock10502 GGTGGATATTCCTTCTATG #rat_gr622006_libT1S1 19 5 sblock10502 GGTGGATATTCCTTCTATG #rat_gr622006_libT1S2 19 5 sblock10502 GTGGATATTCCTTCTATGTTTA #rat_gr649965_libT1S1 22 5 sblock10502 GTGGATATTCCTTCTATGTTT #rat_gr649964_libT1S2 21 4 sblock10502 GGTGGATATTCCTTCTAT #rat_gr622005_libT1S1 18 3 sblock10502 TGGATATTCCTTCTATGT #rat_gr1005694_libT1S2 18 3 sblock10502 AAGGTGGATATTCCTTCTA #rat_gr54059_libT1S1 19 2 sblock10502 AGGTGGATATTCCTTCTA #rat_gr192569_libT1S2 18 2 sblock10502 GGTGGATATTCCTTCTAT #rat_gr622005_libT1S2 18 2 sblock10502 TGGATATTCCTTCTATGTT #rat_gr1005695_libT1S1 19 2 sblock10502 AGGTGGATATTCCTTCTA #rat_gr192569_libT1S1 18 1 sblock10502 GGTGGATATTCCTTCTATGTTTA #rat_gr622011_libT1S2 23 1 sblock10502 GTGGATATTCCTTCTATG #rat_gr649955_libT2S1 18 1 sblock10502 GTGGATATTCCTTCTATG #rat_gr649955_libT4S2 18 1 sblock10502 GTGGATATTCCTTCTATG #rat_gr649955_libT5S1 18 1 sblock10502 GTGGATATTCCTTCTATGT #rat_gr649962_libT2S1 19 1 sblock10502 GTGGATATTCCTTCTATGT #rat_gr649962_libT3S2 19 1 sblock10502 GTGGATATTCCTTCTATGT #rat_gr649962_libT5S2 19 1 sblock10502 GTGGATATTCCTTCTATGTTTA #rat_gr649965_libT1S2 22 1 sblock10502 TGGATATTCCTTCTATGT #rat_gr1005694_libT1S1 18 1 sblock10502 TGGATATTCCTTCTATGTT #rat_gr1005695_libT1S2 19 1 sblock10502 TGGATATTCCTTCTATGTTTA #rat_gr1005696_libT1S1 21 1 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT1S1 21 405 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT1S1 19 262 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT1S2 21 231 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT1S2 19 179 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT1S1 20 42 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT1S2 20 35 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT5S2 21 29 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT2S1 21 20 sblock10502 AACATAGAGGAAATTTCA #rat_gr28064_libT1S1 18 18 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT5S2 19 17 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT2S1 19 16 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT5S1 21 12 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT3S1 21 11 sblock10502 AACATAGAGGAAATTTCACGTT #rat_gr28068_libT1S1 22 11 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT3S1 19 10 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT5S1 19 10 sblock10502 AACATAGAGGAAATTTCA #rat_gr28064_libT1S2 18 9 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT3S2 19 9 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT4S1 21 9 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT4S2 21 7 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT2S2 19 6 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT4S2 19 6 sblock10502 AACATAGAGGAAATTTCAC #rat_gr28065_libT4S1 19 3 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT3S1 20 3 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT3S2 20 3 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT5S1 20 3 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT2S2 21 3 sblock10502 AACATAGAGGAAATTTCACGTT #rat_gr28068_libT1S2 22 3 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT2S1 20 2 sblock10502 AACATAGAGGAAATTTCACG #rat_gr28066_libT5S2 20 2 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libT3S2 21 2 sblock10502 AACATAGAGGAAATTTCACGTT #rat_gr28068_libT5S2 22 2 sblock10502 AACATAGAGGAAATTTCA #rat_gr28064_libT2S1 18 1 sblock10502 AACATAGAGGAAATTTCA #rat_gr28064_libT3S2 18 1 sblock10502 AACATAGAGGAAATTTCA #rat_gr28064_libT5S2 18 1 sblock10502 AACATAGAGGAAATTTCACGT #rat_gr28067_libMirbase_rno-miR-376c 21 1 sblock10502 AACATAGAGGAAATTTCACGTTT #rat_gr28069_libT1S2 23 1 sblock10502 AACATAGAGGAAATTTCACGTTT #rat_gr28069_libT2S1 23 1 sblock10502 ACATAGAGGAAATTTCACG #rat_gr83073_libT1S1 19 1 sblock10502 --------------------TTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGGTATTTATGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAA------------------ humanZ5p83 TTCCAGGACTCAATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGCTTGGAA----- mouseZ8p83 -TTCAGGACTAAATC---TTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGCTGGGTAATGGG ************************************** * *** ** ****************** ************ **** sblock10502 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053593 ENSRNOG00000035470 rno-mir-376c sblock10502 .((..(((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))..)). 1.000 -26.72 # humanZ5p83 .((((((...((.......(((((((((.((((.(((((..((((.((((((((((.............))))))))))))))..))))).)))).)))))))))))...)))))). 0.808 -39.53 # mouseZ8p83 .(((..(((..... .((((..(((.((((.(((((..((((.((((((((((.((.....))...))))))))))))))..))))).)))).)))..))))........)))..))). 0.976 -33.64 # #sblock10502 chromosome:6:134403524:134403607:1 Same_strand|Exonic_non-coding|ENSRNOT00000053593|ENSRNOG00000035470 ## ENSRNOG00000035470|miRNA|rno-mir-376c|rno-mir-376c [Source:miRBase;Acc:MI0003543] ## {MIR: rno-mir-376c} #humanZ5p83 chromosome:14:100575751:100575867:1 intergenic ## {Repeats: trf 0 class=trf} ## {MIR: hsa-mir-376c} #mouseZ8p83 chromosome:12:110960913:110961030:1 intergenic ## {MIR: mmu-mir-376c} ========== sblock10504 (miRBase rno-mir-376a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK] ========== #randfold sblock10504: 0.001 randfold humanZ15p83_sblock10504: 0.004 randfold mouseZ14p83_sblock10504: 0.011 #forester humanZ15p83_sblock10504: 0.818006 forester mouseZ14p83_sblock10504: 1 #identity: 95.65 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT1S1 22 173 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT1S2 22 162 sblock10504 GTAGATTCTCCTTCTATGAGT #rat_gr629726_libT1S1 21 39 sblock10504 GGTAGATTCTCCTTCTATGAG #rat_gr618364_libT1S1 21 35 sblock10504 GGTAGATTCTCCTTCTATGAG #rat_gr618364_libT1S2 21 33 sblock10504 GTAGATTCTCCTTCTATGAGT #rat_gr629726_libT1S2 21 30 sblock10504 GGTAGATTCTCCTTCTAT #rat_gr618361_libT1S1 18 27 sblock10504 GGTAGATTCTCCTTCTATGA #rat_gr618363_libT1S2 20 26 sblock10504 GGTAGATTCTCCTTCTATGA #rat_gr618363_libT1S1 20 20 sblock10504 GGTAGATTCTCCTTCTATG #rat_gr618362_libT1S1 19 19 sblock10504 GGTAGATTCTCCTTCTATG #rat_gr618362_libT1S2 19 16 sblock10504 GTAGATTCTCCTTCTATGA #rat_gr629724_libT1S1 19 14 sblock10504 GGTAGATTCTCCTTCTAT #rat_gr618361_libT1S2 18 13 sblock10504 GTAGATTCTCCTTCTATGAG #rat_gr629725_libT1S2 20 11 sblock10504 AGGTAGATTCTCCTTCTATGAGT #rat_gr190380_libT1S1 23 8 sblock10504 GTAGATTCTCCTTCTATGA #rat_gr629724_libT1S2 19 7 sblock10504 TAGATTCTCCTTCTATGAGTAC #rat_gr764448_libT1S2 22 7 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT5S2 22 5 sblock10504 GGTAGATTCTCCTTCTATGAGTAC #rat_gr618367_libT1S2 24 5 sblock10504 GTAGATTCTCCTTCTATG #rat_gr629723_libT1S2 18 5 sblock10504 GTAGATTCTCCTTCTATGAG #rat_gr629725_libT1S1 20 5 sblock10504 AGGTAGATTCTCCTTCTATGAGT #rat_gr190380_libT1S2 23 4 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT5S1 22 4 sblock10504 TAGATTCTCCTTCTATGAGT #rat_gr764446_libT1S2 20 3 sblock10504 TAGATTCTCCTTCTATGAGTAC #rat_gr764448_libT1S1 22 3 sblock10504 GGTAGATTCTCCTTCTATGAGTAC #rat_gr618367_libT1S1 24 2 sblock10504 GTAGATTCTCCTTCTATGAGTAC #rat_gr629727_libT1S1 23 2 sblock10504 GTAGATTCTCCTTCTATGAGTAC #rat_gr629727_libT1S2 23 2 sblock10504 TAGATTCTCCTTCTATGAG #rat_gr764445_libT1S1 19 2 sblock10504 AAGGTAGATTCTCCTTCT #rat_gr53663_libT1S1 18 1 sblock10504 AAGGTAGATTCTCCTTCTATGA #rat_gr53664_libT1S1 22 1 sblock10504 AGGTAGATTCTCCTTCTA #rat_gr190378_libT1S2 18 1 sblock10504 AGGTAGATTCTCCTTCTAT #rat_gr190379_libT1S2 19 1 sblock10504 GGTAGATTCTCCTTCTATGA #rat_gr618363_libT5S2 20 1 sblock10504 GGTAGATTCTCCTTCTATGAG #rat_gr618364_libMirbase_rno-miR-376a* 21 1 sblock10504 GGTAGATTCTCCTTCTATGAG #rat_gr618364_libT3S2 21 1 sblock10504 GGTAGATTCTCCTTCTATGAG #rat_gr618364_libT5S2 21 1 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT3S1 22 1 sblock10504 GGTAGATTCTCCTTCTATGAGT #rat_gr618365_libT4S1 22 1 sblock10504 GGTAGATTCTCCTTCTATGAGTA #rat_gr618366_libT1S2 23 1 sblock10504 GTAGATTCTCCTTCTATG #rat_gr629723_libT1S1 18 1 sblock10504 GTAGATTCTCCTTCTATGAGT #rat_gr629726_libT2S1 21 1 sblock10504 GTAGATTCTCCTTCTATGAGT #rat_gr629726_libT3S2 21 1 sblock10504 GTAGATTCTCCTTCTATGAGT #rat_gr629726_libT4S2 21 1 sblock10504 TAGATTCTCCTTCTATGA #rat_gr764444_libT1S1 18 1 sblock10504 TAGATTCTCCTTCTATGAGTA #rat_gr764447_libT1S2 21 1 sblock10504 TAGATTCTCCTTCTATGAGTACAA #rat_gr764449_libT1S2 24 1 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT1S1 19 387 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT1S2 19 379 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT1S2 21 285 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT1S1 21 281 sblock10504 ATCGTAGAGGAAAATCCACG #rat_gr223042_libT1S1 20 141 sblock10504 ATCGTAGAGGAAAATCCACG #rat_gr223042_libT1S2 20 98 sblock10504 ATCGTAGAGGAAAATCCA #rat_gr223040_libT1S1 18 63 sblock10504 ATCGTAGAGGAAAATCCA #rat_gr223040_libT1S2 18 61 sblock10504 ATCGTAGAGGAAAATCCACGTT #rat_gr223044_libT1S2 22 21 sblock10504 ATCGTAGAGGAAAATCCACGTT #rat_gr223044_libT1S1 22 14 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT5S2 19 4 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT5S1 19 3 sblock10504 ATCGTAGAGGAAAATCCACGTT #rat_gr223044_libT5S2 22 3 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT3S1 19 2 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT3S2 21 2 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT5S2 21 2 sblock10504 ACTAATCGTAGAGGAAAATCCACGT #rat_gr115081_libT1S1 25 1 sblock10504 AATCGTAGAGGAAAATCCA #rat_gr61513_libT1S2 19 1 sblock10504 AATCGTAGAGGAAAATCCAC #rat_gr61514_libT1S1 20 1 sblock10504 AATCGTAGAGGAAAATCCAC #rat_gr61514_libT1S2 20 1 sblock10504 AATCGTAGAGGAAAATCCACG #rat_gr61515_libT1S1 21 1 sblock10504 AATCGTAGAGGAAAATCCACGT #rat_gr61516_libT1S1 22 1 sblock10504 AATCGTAGAGGAAAATCCACGT #rat_gr61516_libT1S2 22 1 sblock10504 ATCGTAGAGGAAAATCCA #rat_gr223040_libT3S1 18 1 sblock10504 ATCGTAGAGGAAAATCCA #rat_gr223040_libT5S2 18 1 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT2S1 19 1 sblock10504 ATCGTAGAGGAAAATCCAC #rat_gr223041_libT3S2 19 1 sblock10504 ATCGTAGAGGAAAATCCACG #rat_gr223042_libT5S2 20 1 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libMirbase_rno-miR-376a 21 1 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT2S1 21 1 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT3S1 21 1 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT4S2 21 1 sblock10504 ATCGTAGAGGAAAATCCACGT #rat_gr223043_libT5S1 21 1 sblock10504 ATCGTAGAGGAAAATCCACGTT #rat_gr223044_libT5S1 22 1 sblock10504 ATCGTAGAGGAAAATCCACGTTT #rat_gr223045_libT3S1 23 1 sblock10504 TCGTAGAGGAAAATCCACGTTT #rat_gr891050_libT1S2 22 1 sblock10504 CGTAGAGGAAAATCCACG #rat_gr403645_libT1S1 18 1 sblock10504 CGTAGAGGAAAATCCACG #rat_gr403645_libT1S2 18 1 sblock10504 CGTAGAGGAAAATCCACGT #rat_gr403646_libT1S2 19 1 sblock10504 CGTAGAGGAAAATCCACGTT #rat_gr403647_libT1S2 20 1 sblock10504 GTAGAGGAAAATCCACGT #rat_gr629593_libT1S2 18 1 sblock10504 TGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCA humanZ15p83 ---------AAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTT--------- mouseZ14p83 -----------AGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGT----------- ************************** **** **** ***** ***************** sblock10504 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053651 ENSRNOG00000035528 rno-mir-376a sblock10504 .((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))). 1.000 -23.21 # humanZ15p83 (((.((.((((.(((.(((((((...(((.....))).....)))))))))).)))).)).))) 1.000 -17.00 # mouseZ14p83 ..((.((((.(((.(((((((...................)))))))))).)))).)).. 1.000 -14.41 # #sblock10504 chromosome:6:134404690:134404771:1 Same_strand|Exonic_non-coding|ENSRNOT00000053651|ENSRNOG00000035528 ## ENSRNOG00000035528|miRNA|rno-mir-376a|rno-mir-376a [Source:miRBase;Acc:MI0003545] ## {MIR: rno-mir-376a} #humanZ15p83 chromosome:14:100576874:100576937:1 intergenic ## {MIR: hsa-mir-376a-1} #mouseZ14p83 chromosome:12:110961964:110962085:1 Same_strand|Boundary_non-coding|ENSMUST00000093571|ENSMUSG00000076043|miRNA|mmu-mir-376a [Source:miRBase;Acc:MI0000793] ## {MIR: mmu-mir-376a} ========== sblock10505 (miRBase rno-mir-300) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10505: 0.001 randfold mouseZ16p83_sblock10505: 0.001 #forester mouseZ16p83_sblock10505: 1 #identity: 100.00 sblock10505 TGAAGAGAGGTTATCCTT #rat_gr926659_libT1S1 18 5 sblock10505 TTGAAGAGAGGTTATCCT #rat_gr1131777_libT1S1 18 4 sblock10505 TTGAAGAGAGGTTATCCTT #rat_gr1131778_libT1S1 19 4 sblock10505 TTGAAGAGAGGTTATCCTTTGTG #rat_gr1131781_libT1S1 23 4 sblock10505 TTGAAGAGAGGTTATCCTTTGTGT #rat_gr1131782_libT1S1 24 4 sblock10505 TGAAGAGAGGTTATCCTTTGTGT #rat_gr926664_libT1S1 23 4 sblock10505 TGAAGAGAGGTTATCCTTTGTGTGT #rat_gr926666_libT1S2 25 4 sblock10505 TGAAGAGAGGTTATCCTTTGTGT #rat_gr926664_libT1S2 23 3 sblock10505 TGAAGAGAGGTTATCCTTTGTGTG #rat_gr926665_libT1S2 24 3 sblock10505 TTGAAGAGAGGTTATCCTT #rat_gr1131778_libT1S2 19 2 sblock10505 TTGAAGAGAGGTTATCCTTTGT #rat_gr1131780_libT1S1 22 2 sblock10505 TGAAGAGAGGTTATCCTT #rat_gr926659_libT1S2 18 2 sblock10505 TGAAGAGAGGTTATCCTTT #rat_gr926660_libT5S1 19 2 sblock10505 TGAAGAGAGGTTATCCTTTG #rat_gr926661_libT1S1 20 2 sblock10505 TGAAGAGAGGTTATCCTTTGT #rat_gr926662_libT1S2 21 2 sblock10505 TGAAGAGAGGTTATCCTTTGTG #rat_gr926663_libT1S1 22 2 sblock10505 TGAAGAGAGGTTATCCTTTGTG #rat_gr926663_libT1S2 22 2 sblock10505 TGAAGAGAGGTTATCCTTTGTGTG #rat_gr926665_libT1S1 24 2 sblock10505 TGAAGAGAGGTTATCCTTTGTGTGT #rat_gr926666_libT1S1 25 2 sblock10505 GAAGAGAGGTTATCCTTTGTGTGT #rat_gr485443_libT1S1 24 2 sblock10505 AAGAGAGGTTATCCTTTGTGT #rat_gr42947_libT1S2 21 2 sblock10505 TTGAAGAGAGGTTATCCT #rat_gr1131777_libT1S2 18 1 sblock10505 TTGAAGAGAGGTTATCCTTT #rat_gr1131779_libT1S2 20 1 sblock10505 TTGAAGAGAGGTTATCCTTTGT #rat_gr1131780_libMirbase_rno-miR-300-5p 22 1 sblock10505 TGAAGAGAGGTTATCCTTT #rat_gr926660_libT1S1 19 1 sblock10505 TGAAGAGAGGTTATCCTTT #rat_gr926660_libT1S2 19 1 sblock10505 GAAGAGAGGTTATCCTTTGTG #rat_gr485442_libT1S1 21 1 sblock10505 GAAGAGAGGTTATCCTTTGTGTGT #rat_gr485443_libT1S2 24 1 sblock10505 GAAGAGAGGTTATCCTTTGTGTGT #rat_gr485443_libT5S2 24 1 sblock10505 AAGAGAGGTTATCCTTTG #rat_gr42944_libT1S1 18 1 sblock10505 AAGAGAGGTTATCCTTTG #rat_gr42944_libT1S2 18 1 sblock10505 AAGAGAGGTTATCCTTTGT #rat_gr42945_libT1S2 19 1 sblock10505 AAGAGAGGTTATCCTTTGTG #rat_gr42946_libT1S2 20 1 sblock10505 AAGAGAGGTTATCCTTTGTGTGT #rat_gr42948_libT1S1 23 1 sblock10505 AAGAGAGGTTATCCTTTGTGTGT #rat_gr42948_libT1S2 23 1 sblock10505 AGAGAGGTTATCCTTTGTGTG #rat_gr142103_libT1S2 21 1 sblock10505 AGAGAGGTTATCCTTTGTGTGT #rat_gr142104_libT1S1 22 1 sblock10505 AGAGAGGTTATCCTTTGTGTGT #rat_gr142104_libT1S2 22 1 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT1S1 22 197 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT1S1 19 160 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT1S1 20 132 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT1S2 22 119 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT1S2 19 118 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT1S2 20 116 sblock10505 TGCAAGGGCAAGCTCTCTTCGA #rat_gr959275_libT1S1 22 36 sblock10505 TATGCAAGGGCAAGCTCTCTT #rat_gr796460_libT1S1 21 25 sblock10505 TGCAAGGGCAAGCTCTCTTC #rat_gr959273_libT1S1 20 25 sblock10505 TATGCAAGGGCAAGCTCTCTT #rat_gr796460_libT1S2 21 23 sblock10505 ATGCAAGGGCAAGCTCTCTTCGA #rat_gr228706_libT1S2 23 17 sblock10505 TATGCAAGGGCAAGCTCT #rat_gr796457_libT1S1 18 14 sblock10505 ATGCAAGGGCAAGCTCTC #rat_gr228701_libT1S1 18 14 sblock10505 ATGCAAGGGCAAGCTCTCTTCGA #rat_gr228706_libT1S1 23 14 sblock10505 TGCAAGGGCAAGCTCTCTTCGA #rat_gr959275_libT1S2 22 14 sblock10505 TGCAAGGGCAAGCTCTCT #rat_gr959271_libT1S2 18 13 sblock10505 TATGCAAGGGCAAGCTCT #rat_gr796457_libT1S2 18 12 sblock10505 ATGCAAGGGCAAGCTCTCT #rat_gr228702_libT1S1 19 12 sblock10505 TGCAAGGGCAAGCTCTCT #rat_gr959271_libT1S1 18 12 sblock10505 CAAGGGCAAGCTCTCTTCGA #rat_gr271140_libT1S1 20 12 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT5S2 19 11 sblock10505 ATGCAAGGGCAAGCTCTC #rat_gr228701_libT1S2 18 10 sblock10505 ATGCAAGGGCAAGCTCTCTTC #rat_gr228704_libT1S1 21 9 sblock10505 CAAGGGCAAGCTCTCTTCGA #rat_gr271140_libT1S2 20 9 sblock10505 ATGCAAGGGCAAGCTCTCT #rat_gr228702_libT1S2 19 8 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT3S2 19 7 sblock10505 TGCAAGGGCAAGCTCTCTTC #rat_gr959273_libT1S2 20 7 sblock10505 CAAGGGCAAGCTCTCTTCGAG #rat_gr271141_libT1S1 21 7 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT5S2 22 6 sblock10505 ATGCAAGGGCAAGCTCTCTTC #rat_gr228704_libT1S2 21 6 sblock10505 CAAGGGCAAGCTCTCTTC #rat_gr271138_libT1S1 18 6 sblock10505 CAAGGGCAAGCTCTCTTCGAG #rat_gr271141_libT1S2 21 6 sblock10505 CAAGGGCAAGCTCTCTTCGAGGA #rat_gr271143_libT1S1 23 5 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT3S2 22 4 sblock10505 ATGCAAGGGCAAGCTCTCTTCG #rat_gr228705_libT1S2 22 4 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT3S2 20 3 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT5S2 20 3 sblock10505 CAAGGGCAAGCTCTCTTC #rat_gr271138_libT1S2 18 3 sblock10505 CAAGGGCAAGCTCTCTTCGAGG #rat_gr271142_libT1S2 22 3 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT3S1 19 2 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT5S1 19 2 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT3S1 20 2 sblock10505 ATGCAAGGGCAAGCTCTCTT #rat_gr228703_libT1S1 20 2 sblock10505 ATGCAAGGGCAAGCTCTCTTCG #rat_gr228705_libT1S1 22 2 sblock10505 TGCAAGGGCAAGCTCTCTTCG #rat_gr959274_libT1S2 21 2 sblock10505 CAAGGGCAAGCTCTCTTCG #rat_gr271139_libT1S1 19 2 sblock10505 CAAGGGCAAGCTCTCTTCGAGG #rat_gr271142_libT1S1 22 2 sblock10505 ATATGCAAGGGCAAGCTCTCTTC #rat_gr212243_libT1S1 23 1 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT2S1 19 1 sblock10505 TATGCAAGGGCAAGCTCTC #rat_gr796458_libT4S1 19 1 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT4S1 20 1 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT4S2 20 1 sblock10505 TATGCAAGGGCAAGCTCTCT #rat_gr796459_libT5S1 20 1 sblock10505 TATGCAAGGGCAAGCTCTCTT #rat_gr796460_libT3S1 21 1 sblock10505 TATGCAAGGGCAAGCTCTCTT #rat_gr796460_libT4S1 21 1 sblock10505 TATGCAAGGGCAAGCTCTCTT #rat_gr796460_libT5S2 21 1 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libMirbase_rno-miR-300-3p 22 1 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT2S1 22 1 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT3S1 22 1 sblock10505 TATGCAAGGGCAAGCTCTCTTC #rat_gr796461_libT4S1 22 1 sblock10505 TATGCAAGGGCAAGCTCTCTTCG #rat_gr796462_libT1S2 23 1 sblock10505 ATGCAAGGGCAAGCTCTC #rat_gr228701_libT3S1 18 1 sblock10505 ATGCAAGGGCAAGCTCTCTTC #rat_gr228704_libT2S1 21 1 sblock10505 TGCAAGGGCAAGCTCTCTT #rat_gr959272_libT1S2 19 1 sblock10505 TGCAAGGGCAAGCTCTCTTC #rat_gr959273_libT5S2 20 1 sblock10505 TGCAAGGGCAAGCTCTCTTCG #rat_gr959274_libT1S1 21 1 sblock10505 TGCAAGGGCAAGCTCTCTTCGAG #rat_gr959276_libT5S2 23 1 sblock10505 TGCAAGGGCAAGCTCTCTTCGAGGA #rat_gr959277_libT1S1 25 1 sblock10505 GCAAGGGCAAGCTCTCTTC #rat_gr527681_libT1S1 19 1 sblock10505 GCAAGGGCAAGCTCTCTTC #rat_gr527681_libT1S2 19 1 sblock10505 CAAGGGCAAGCTCTCTTCGAG #rat_gr271141_libT3S2 21 1 sblock10505 -------------------GCTACTTGAAGAGAGGTTATCCTTTGTGTGTTTGCTTTACGCGAAATGAATATGCAAGGGCAAGCTCTCTTCGAGGAGC------------- mouseZ16p83 CCAGCGCTCCTTATCGTTTGCTACTTGAAGAGAGGTTATCCTTTGTGTGTTTGCTTTACGCGAAATGAATATGCAAGGGCAAGCTCTCTTCGAGGAGCAAATGCTGCCTGG ******************************************************************************* sblock10505 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053757 ENSRNOG00000035634 rno-mir-300 sblock10505 (((.(((((((((((.((..(((((((((((((..(((....)))..))))))))))))).)).))))))))))).))) 1.000 -35.50 # mouseZ16p83 ((((.((.......((((((((.(((((((((((.((..(((((((((((((..(((....)))..))))))))))))).)).))))))))))).))))))))..)))))) 1.000 -48.40 # #sblock10505 chromosome:6:134405237:134405315:1 Same_strand|Exonic_non-coding|ENSRNOT00000053757|ENSRNOG00000035634 ## Same_strand|Boundary_non-coding|ENSRNOT00000053757|ENSRNOG00000035634 ## ENSRNOG00000035634|miRNA|rno-mir-300|rno-mir-300 [Source:miRBase;Acc:MI0000971] ## {MIR: rno-mir-300} #mouseZ16p83 chromosome:12:110962504:110962614:1 Same_strand|Boundary_non-coding|ENSMUST00000083485|ENSMUSG00000065419|miRNA|mmu-mir-300 [Source:miRBase;Acc:MI0000400] ## {MIR: mmu-mir-300} ========== sblock10506 (miRBase rno-mir-381) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK] ========== #randfold sblock10506: 0.001 randfold humanZ16p83_sblock10506: 0.001 randfold mouseZ17p83_sblock10506: 0.001 #forester humanZ16p83_sblock10506: 0.898423 forester mouseZ17p83_sblock10506: 0.898423 #identity: 99.04 sblock10506 AGCGAGGTTGCCCTTTGTA #rat_gr161531_libT1S1 19 22 sblock10506 AGCGAGGTTGCCCTTTGTATAT #rat_gr161534_libT1S1 22 22 sblock10506 AGCGAGGTTGCCCTTTGTATAT #rat_gr161534_libT1S2 22 13 sblock10506 AGCGAGGTTGCCCTTTGTA #rat_gr161531_libT1S2 19 9 sblock10506 AGCGAGGTTGCCCTTTGTATA #rat_gr161533_libT1S2 21 7 sblock10506 AGCGAGGTTGCCCTTTGTATATTC #rat_gr161536_libT1S1 24 7 sblock10506 AGCGAGGTTGCCCTTTGTATA #rat_gr161533_libT1S1 21 6 sblock10506 AGCGAGGTTGCCCTTTGT #rat_gr161530_libT1S1 18 4 sblock10506 AGCGAGGTTGCCCTTTGTAT #rat_gr161532_libT1S2 20 3 sblock10506 AGCGAGGTTGCCCTTTGTATAT #rat_gr161534_libT3S2 22 2 sblock10506 AGCGAGGTTGCCCTTTGTA #rat_gr161531_libT2S1 19 1 sblock10506 AGCGAGGTTGCCCTTTGTAT #rat_gr161532_libT1S1 20 1 sblock10506 AGCGAGGTTGCCCTTTGTATAT #rat_gr161534_libT2S1 22 1 sblock10506 AGCGAGGTTGCCCTTTGTATAT #rat_gr161534_libT5S2 22 1 sblock10506 AGCGAGGTTGCCCTTTGTATATT #rat_gr161535_libT1S2 23 1 sblock10506 AGCGAGGTTGCCCTTTGTATATT #rat_gr161535_libT3S2 23 1 sblock10506 CGAGGTTGCCCTTTGTATAT #rat_gr390426_libT1S2 20 1 sblock10506 TATACAAGGGCAAGCTCTCT #rat_gr791065_libT1S1 20 28 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libT1S1 19 25 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libT1S2 19 18 sblock10506 TATACAAGGGCAAGCTCT #rat_gr791063_libT1S1 18 6 sblock10506 TATACAAGGGCAAGCTCTCT #rat_gr791065_libT1S2 20 4 sblock10506 TATACAAGGGCAAGCTCT #rat_gr791063_libT1S2 18 3 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libT3S2 19 3 sblock10506 ATATACAAGGGCAAGCTCTCT #rat_gr211135_libT1S1 21 2 sblock10506 ATATACAAGGGCAAGCTCTC #rat_gr211134_libT1S1 20 1 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libMirbase_rno-miR-381 19 1 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libT3S1 19 1 sblock10506 TATACAAGGGCAAGCTCTC #rat_gr791064_libT4S2 19 1 sblock10506 TATACAAGGGCAAGCTCTCT #rat_gr791065_libT4S1 20 1 sblock10506 TATACAAGGGCAAGCTCTCT #rat_gr791065_libT5S1 20 1 sblock10506 -------------AGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGGATATACAAGGGCAAGCTCTCT------------- humanZ16p83 GTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAAC mouseZ17p83 GTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAAC *************************************** ********************* sblock10506 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053616 ENSRNOG00000035493 rno-mir-381 sblock10506 ((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)) 1.000 -28.30 # humanZ16p83 ((((((((((((.((.(((.((((((.((((((((((.(((....)))...)))))))))))))))).))).)).)))))))))))) 1.000 -44.50 # mouseZ17p83 ((((((((((((.((.(((.((((((.((((((((((.(((....)))...)))))))))))))))).))).)).)))))))))))) 1.000 -44.50 # #sblock10506 chromosome:6:134407700:134407760:1 Same_strand|Exonic_non-coding|ENSRNOT00000053616|ENSRNOG00000035493 ## Same_strand|Boundary_non-coding|ENSRNOT00000053616|ENSRNOG00000035493 ## ENSRNOG00000035493|miRNA|rno-mir-381|rno-mir-381 [Source:miRBase;Acc:MI0003546] ## {MIR: rno-mir-381} #humanZ16p83 chromosome:14:100582004:100582090:1 Same_strand|Boundary_non-coding|ENST00000362150|ENSG00000199020|miRNA|hsa-mir-381 [Source:miRBase;Acc:MI0000789] ## {MIR: hsa-mir-381} #mouseZ17p83 chromosome:12:110965026:110965112:1 Same_strand|Boundary_non-coding|ENSMUST00000083632|ENSMUSG00000065566|miRNA|mmu-mir-381 [Source:miRBase;Acc:MI0000798] ## {MIR: mmu-mir-381} ========== sblock10507 (miRBase rno-mir-487b) [miRNAknown_rep_cloningHIGH_multiarm_DicerOK_randfoldOK_nonpairedHIGH_bulgeHIGH] ========== #randfold sblock10507: 0.001 randfold humanZ18p83_sblock10507: 0.001 randfold mouseZ20p83_sblock10507: 0.002 #forester humanZ18p83_sblock10507: 0.787625 forester mouseZ20p83_sblock10507: 0.980836 #identity: 93.49 sblock10507 GTGGTTATCCCTGTCCTCT #rat_gr652750_libT1S1 19 2 sblock10507 GTGGTTATCCCTGTCCTCTTC #rat_gr652751_libT1S1 21 2 sblock10507 GTGGTTATCCCTGTCCTCTTC #rat_gr652751_libT5S2 21 2 sblock10507 GAGAGTGGTTATCCCTGTCCTC #rat_gr505834_libT1S1 22 1 sblock10507 AGTGGTTATCCCTGTCCTC #rat_gr201230_libT1S1 19 1 sblock10507 AGTGGTTATCCCTGTCCTCTTC #rat_gr201231_libT1S1 22 1 sblock10507 AGTGGTTATCCCTGTCCTCTTCGC #rat_gr201232_libT1S1 24 1 sblock10507 AGTGGTTATCCCTGTCCTCTTCGC #rat_gr201232_libT1S2 24 1 sblock10507 GTGGTTATCCCTGTCCTC #rat_gr652749_libT1S2 18 1 sblock10507 GTGGTTATCCCTGTCCTCT #rat_gr652750_libT1S2 19 1 sblock10507 TGGTTATCCCTGTCCTCT #rat_gr1068430_libT1S2 18 1 sblock10507 TATCCCTGTCCTCTTCGCTTCACT #rat_gr794518_libT1S2 24 1 sblock10507 ATCCCTGTCCTCTTCGCT #rat_gr220679_libT1S2 18 1 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT1S1 22 7114 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT1S2 22 5086 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT1S1 20 2388 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT1S1 21 2387 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT1S2 20 1768 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT1S2 21 1644 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT1S1 21 602 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT1S1 18 599 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT1S1 23 445 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT1S2 21 394 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT1S2 18 330 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT1S1 22 316 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT1S1 19 315 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT1S1 20 304 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT1S1 19 296 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT1S2 23 296 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT1S2 19 240 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT1S2 20 240 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT1S2 22 227 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT1S2 19 222 sblock10507 ATCGTACAGGGTCATCCA #rat_gr223025_libT1S1 18 57 sblock10507 ATCGTACAGGGTCATCCA #rat_gr223025_libT1S2 18 42 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT5S2 22 33 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT4S2 22 30 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT5S1 22 23 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT3S2 22 21 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT3S1 22 18 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT4S1 22 17 sblock10507 ATCGTACAGGGTCATCCACTTTT #rat_gr223030_libT1S1 23 16 sblock10507 TCGTACAGGGTCATCCACTT #rat_gr890975_libT1S1 20 15 sblock10507 TCGTACAGGGTCATCCACT #rat_gr890974_libT1S1 19 14 sblock10507 TCGTACAGGGTCATCCACTT #rat_gr890975_libT1S2 20 13 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT5S1 21 12 sblock10507 TCGTACAGGGTCATCCACT #rat_gr890974_libT1S2 19 12 sblock10507 TCGTACAGGGTCATCCACTTT #rat_gr890976_libT1S1 21 12 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT3S1 21 11 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT5S2 21 11 sblock10507 AATCGTACAGGGTCATCCACTTTT #rat_gr61511_libT1S1 24 11 sblock10507 ATCGTACAGGGTCATCCACTTTT #rat_gr223030_libT1S2 23 11 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT3S2 21 9 sblock10507 TCGTACAGGGTCATCCAC #rat_gr890973_libT1S2 18 9 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT3S1 20 8 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT3S2 20 8 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT2S2 22 8 sblock10507 TCGTACAGGGTCATCCAC #rat_gr890973_libT1S1 18 7 sblock10507 CGTACAGGGTCATCCACTT #rat_gr403472_libT1S2 19 7 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT2S2 20 6 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT4S1 20 6 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT5S2 20 6 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT4S2 21 6 sblock10507 AATCGTACAGGGTCATCCACTT #rat_gr61509_libT2S1 22 6 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT5S2 23 6 sblock10507 TCGTACAGGGTCATCCACTTT #rat_gr890976_libT1S2 21 6 sblock10507 GTACAGGGTCATCCACTT #rat_gr628271_libT1S2 18 6 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT2S1 20 5 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT4S1 21 5 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT5S1 20 4 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT2S2 21 4 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT5S1 23 4 sblock10507 AATCGTACAGGGTCATCCACTTTT #rat_gr61511_libT1S2 24 4 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT3S2 21 4 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT5S1 21 4 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT5S1 22 4 sblock10507 ATCGTACAGGGTCATCCACTTTTTC #rat_gr223031_libT1S1 25 4 sblock10507 CGTACAGGGTCATCCACTT #rat_gr403472_libT1S1 19 4 sblock10507 GCTTCACTTATGCCGAATC #rat_gr576752_libT1S1 19 3 sblock10507 GCTTCACTTATGCCGAATCGTAC #rat_gr576754_libT1S1 23 3 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT3S2 18 3 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT4S2 18 3 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT5S2 18 3 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT5S2 19 3 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT2S1 21 3 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT4S2 23 3 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT3S1 19 3 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT3S2 20 3 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT3S1 21 3 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT4S2 21 3 sblock10507 TCGTACAGGGTCATCCACTTTTTC #rat_gr890978_libT1S1 24 3 sblock10507 GCTTCACTTATGCCGAAT #rat_gr576751_libT1S2 18 2 sblock10507 GCTTCACTTATGCCGAATC #rat_gr576752_libT1S2 19 2 sblock10507 GCTTCACTTATGCCGAATCGTAC #rat_gr576754_libT1S2 23 2 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT5S1 18 2 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT3S2 19 2 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT5S1 19 2 sblock10507 AATCGTACAGGGTCATCCAC #rat_gr61507_libT4S2 20 2 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libT4S1 21 2 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT2S2 23 2 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT3S1 23 2 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT3S2 23 2 sblock10507 AATCGTACAGGGTCATCCACTTTTT #rat_gr61512_libT1S1 25 2 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT5S1 19 2 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT5S2 19 2 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT4S2 20 2 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT5S2 21 2 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT3S1 22 2 sblock10507 TCGTACAGGGTCATCCACTT #rat_gr890975_libT5S1 20 2 sblock10507 TCGTACAGGGTCATCCACTTTT #rat_gr890977_libT1S1 22 2 sblock10507 CGTACAGGGTCATCCACT #rat_gr403471_libT1S2 18 2 sblock10507 GCTTCACTTATGCCGAATCGT #rat_gr576753_libT1S2 21 1 sblock10507 GCTTCACTTATGCCGAATCGTACA #rat_gr576755_libT1S1 24 1 sblock10507 TATGCCGAATCGTACAGG #rat_gr796713_libT1S2 18 1 sblock10507 TATGCCGAATCGTACAGGGT #rat_gr796714_libT1S2 20 1 sblock10507 GAATCGTACAGGGTCATCCACTT #rat_gr489610_libT1S1 23 1 sblock10507 GAATCGTACAGGGTCATCCACTTT #rat_gr489611_libT1S1 24 1 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT3S1 18 1 sblock10507 AATCGTACAGGGTCATCC #rat_gr61505_libT4S1 18 1 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT2S1 19 1 sblock10507 AATCGTACAGGGTCATCCA #rat_gr61506_libT3S1 19 1 sblock10507 AATCGTACAGGGTCATCCACT #rat_gr61508_libMirbase_rno-miR-487b 21 1 sblock10507 AATCGTACAGGGTCATCCACTTT #rat_gr61510_libT4S1 23 1 sblock10507 AATCGTACAGGGTCATCCACTTTT #rat_gr61511_libT3S1 24 1 sblock10507 AATCGTACAGGGTCATCCACTTTTT #rat_gr61512_libT1S2 25 1 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT2S1 19 1 sblock10507 ATCGTACAGGGTCATCCAC #rat_gr223026_libT3S2 19 1 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT2S1 20 1 sblock10507 ATCGTACAGGGTCATCCACT #rat_gr223027_libT5S1 20 1 sblock10507 ATCGTACAGGGTCATCCACTT #rat_gr223028_libT2S1 21 1 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT3S2 22 1 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT4S1 22 1 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT4S2 22 1 sblock10507 ATCGTACAGGGTCATCCACTTT #rat_gr223029_libT5S2 22 1 sblock10507 ATCGTACAGGGTCATCCACTTTT #rat_gr223030_libT2S1 23 1 sblock10507 TCGTACAGGGTCATCCAC #rat_gr890973_libT2S1 18 1 sblock10507 TCGTACAGGGTCATCCAC #rat_gr890973_libT3S1 18 1 sblock10507 TCGTACAGGGTCATCCACTTT #rat_gr890976_libT3S1 21 1 sblock10507 TCGTACAGGGTCATCCACTTTT #rat_gr890977_libT1S2 22 1 sblock10507 CGTACAGGGTCATCCACT #rat_gr403471_libT1S1 18 1 sblock10507 CGTACAGGGTCATCCACTTT #rat_gr403473_libT1S1 20 1 sblock10507 GTACAGGGTCATCCACTT #rat_gr628271_libT1S1 18 1 sblock10507 --------------------TGGTACTTGGAGAGTGGTTATCCCTGTCCTCTTCGCTTCACTTATGCCGAATCGTACAGGGTCATCCACTTTTTCAGTATCA------------------ humanZ18p83 TTCTTTTCCGTGCTAACCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTGTTCGTTTTGCTCATGTCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGAGCGCAGACTCTGGAG mouseZ20p83 ----------GGCCGAGCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTCTTCGCTTCACTCATGCCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGTGC------------- ****************************** **** ** ** *** *********************************** sblock10507 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054597 ENSRNOG00000036489 rno-mir-487b sblock10507 .((((((..((((((((....((((((.(..(((((.........).))))..).))))))....))))))))..)))))). 1.000 -32.20 # humanZ18p83 .(((..((.(((((....(((((((((..((((((((....((((((...(((((....((....)))))))...))))))....))))))))..)))))))))))))).))....))). 0.995 -42.70 # mouseZ20p83 ......(((((((((((..((((((((....((((((....(((((.........)).)))....))))))....))))))))..))))))))).)) 0.986 -35.20 # #sblock10507 chromosome:6:134408209:134408290:1 Same_strand|Exonic_non-coding|ENSRNOT00000054597|ENSRNOG00000036489 ## ENSRNOG00000036489|miRNA|rno-mir-487b|rno-mir-487b [Source:miRBase;Acc:MI0003547] ## {MIR: rno-mir-487b} #humanZ18p83 chromosome:14:100582526:100582645:1 Same_strand|Boundary_non-coding|ENST00000385021|ENSG00000207754|miRNA|hsa-mir-487b [Source:miRBase;Acc:MI0003530] ## {Repeats: MIR 1 class=SINE/MIR} ## {MIR: hsa-mir-487b} #mouseZ20p83 chromosome:12:110965533:110965629:1 Same_strand|Boundary_non-coding|ENSMUST00000102265|ENSMUSG00000076219|miRNA|mmu-mir-487b [Source:miRBase;Acc:MI0003534] ## {Repeats: MIR 1 class=SINE/MIR} ## {MIR: mmu-mir-487b} ========== sblock10514 (miRBase rno-mir-485) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10514: 0.001 randfold humanZ28p83_sblock10514: 0.006 randfold mouseZ31p83_sblock10514: 0.001 #forester humanZ28p83_sblock10514: 0.929101 forester mouseZ31p83_sblock10514: 1 #identity: 96.65 sblock10514 AGAGGCTGGCCGTGATGAA #rat_gr144249_libT1S1 19 100 sblock10514 AGAGGCTGGCCGTGATGAA #rat_gr144249_libT1S2 19 99 sblock10514 AGAGGCTGGCCGTGATGAATTCG #rat_gr144253_libT1S2 23 44 sblock10514 AGAGGCTGGCCGTGATGA #rat_gr144248_libT1S1 18 35 sblock10514 AGAGGCTGGCCGTGATGAATTCG #rat_gr144253_libT1S1 23 35 sblock10514 AGAGGCTGGCCGTGATGAATTC #rat_gr144252_libT1S2 22 26 sblock10514 AGAGGCTGGCCGTGATGA #rat_gr144248_libT1S2 18 25 sblock10514 AGAGGCTGGCCGTGATGAAT #rat_gr144250_libT1S2 20 22 sblock10514 AGAGGCTGGCCGTGATGAATTC #rat_gr144252_libT1S1 22 20 sblock10514 AGAGGCTGGCCGTGATGAAT #rat_gr144250_libT1S1 20 19 sblock10514 AGAGGCTGGCCGTGATGAATTCGA #rat_gr144254_libT1S1 24 11 sblock10514 AGGCTGGCCGTGATGAATTC #rat_gr182978_libT1S1 20 8 sblock10514 AGAGAGGCTGGCCGTGATGA #rat_gr142068_libT1S1 20 7 sblock10514 AGGCTGGCCGTGATGAATTCGA #rat_gr182980_libT1S1 22 6 sblock10514 AGAGGCTGGCCGTGATGAATT #rat_gr144251_libT1S2 21 4 sblock10514 AGGCTGGCCGTGATGAATTCGA #rat_gr182980_libT1S2 22 4 sblock10514 AGGCTGGCCGTGATGAAT #rat_gr182976_libT1S1 18 3 sblock10514 AGAGAGGCTGGCCGTGATGAAT #rat_gr142070_libT1S1 22 2 sblock10514 AGAGGCTGGCCGTGATGAATTCGA #rat_gr144254_libT1S2 24 2 sblock10514 AGGCTGGCCGTGATGAAT #rat_gr182976_libT1S2 18 2 sblock10514 AGGCTGGCCGTGATGAATT #rat_gr182977_libT1S1 19 2 sblock10514 AGGCTGGCCGTGATGAATTCG #rat_gr182979_libT1S1 21 2 sblock10514 AGGCTGGCCGTGATGAATTCGAT #rat_gr182981_libT1S1 23 2 sblock10514 AGGCTGGCCGTGATGAATTCGAT #rat_gr182981_libT1S2 23 2 sblock10514 AGAGAGGCTGGCCGTGAT #rat_gr142067_libT1S2 18 1 sblock10514 AGAGAGGCTGGCCGTGATGAA #rat_gr142069_libT1S1 21 1 sblock10514 AGAGAGGCTGGCCGTGATGAA #rat_gr142069_libT1S2 21 1 sblock10514 AGAGGCTGGCCGTGATGAA #rat_gr144249_libT5S2 19 1 sblock10514 AGAGGCTGGCCGTGATGAATT #rat_gr144251_libT1S1 21 1 sblock10514 AGAGGCTGGCCGTGATGAATTC #rat_gr144252_libMirbase_rno-miR-485 22 1 sblock10514 AGAGGCTGGCCGTGATGAATTC #rat_gr144252_libT2S1 22 1 sblock10514 AGAGGCTGGCCGTGATGAATTCG #rat_gr144253_libT5S2 23 1 sblock10514 AGGCTGGCCGTGATGAATTCG #rat_gr182979_libT1S2 21 1 sblock10514 AGGCTGGCCGTGATGAATTCGATT #rat_gr182982_libT1S1 24 1 sblock10514 TCTAAACGAGTCATACACG #rat_gr892222_libT1S1 19 2 sblock10514 TCGATTCATCTAAACGAG #rat_gr888630_libT1S2 18 1 sblock10514 TCGATTCATCTAAACGAGTC #rat_gr888631_libT1S2 20 1 sblock10514 GATTCATCTAAACGAGTCATACAC #rat_gr524071_libT1S1 24 1 sblock10514 ATTCATCTAAACGAGTCA #rat_gr241403_libT1S2 18 1 sblock10514 TCTAAACGAGTCATACACG #rat_gr892222_libT1S2 19 1 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT1S1 22 453 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT1S2 22 389 sblock10514 CATACACGGCTCTCCTCTC #rat_gr307171_libT1S1 19 118 sblock10514 CATACACGGCTCTCCTCTC #rat_gr307171_libT1S2 19 113 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT1S2 20 90 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT1S1 20 76 sblock10514 GTCATACACGGCTCTCCTCTCT #rat_gr634499_libT1S1 22 62 sblock10514 GTCATACACGGCTCTCCTCTC #rat_gr634498_libT1S2 21 39 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT1S1 19 35 sblock10514 GTCATACACGGCTCTCCTCTCT #rat_gr634499_libT1S2 22 31 sblock10514 GTCATACACGGCTCTCCTCTC #rat_gr634498_libT1S1 21 28 sblock10514 GTCATACACGGCTCTCCT #rat_gr634495_libT1S1 18 26 sblock10514 CATACACGGCTCTCCTCT #rat_gr307170_libT1S1 18 22 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT1S2 19 20 sblock10514 AGTCATACACGGCTCTCCTCTC #rat_gr196684_libT1S1 22 19 sblock10514 GTCATACACGGCTCTCCT #rat_gr634495_libT1S2 18 19 sblock10514 CATACACGGCTCTCCTCT #rat_gr307170_libT1S2 18 17 sblock10514 CATACACGGCTCTCCTCTCTT #rat_gr307173_libT1S1 21 16 sblock10514 AGTCATACACGGCTCTCC #rat_gr196680_libT1S1 18 15 sblock10514 AGTCATACACGGCTCTCCTCTCT #rat_gr196685_libT1S2 23 14 sblock10514 AGTCATACACGGCTCTCCTCTC #rat_gr196684_libT1S2 22 12 sblock10514 TCATACACGGCTCTCCTCTCTTC #rat_gr822416_libT1S1 23 12 sblock10514 AGTCATACACGGCTCTCCTC #rat_gr196682_libT1S1 20 11 sblock10514 AGTCATACACGGCTCTCC #rat_gr196680_libT1S2 18 10 sblock10514 AGTCATACACGGCTCTCCT #rat_gr196681_libT1S2 19 10 sblock10514 CATACACGGCTCTCCTCTCTTCT #rat_gr307175_libT1S2 23 9 sblock10514 AGTCATACACGGCTCTCCTCTCT #rat_gr196685_libT1S1 23 8 sblock10514 GTCATACACGGCTCTCCTCT #rat_gr634497_libT1S2 20 8 sblock10514 CATACACGGCTCTCCTCTCTT #rat_gr307173_libT1S2 21 8 sblock10514 AGTCATACACGGCTCTCCTC #rat_gr196682_libT1S2 20 7 sblock10514 TCATACACGGCTCTCCTCTCTTC #rat_gr822416_libT1S2 23 7 sblock10514 AGTCATACACGGCTCTCCT #rat_gr196681_libT1S1 19 6 sblock10514 GTCATACACGGCTCTCCTCT #rat_gr634497_libT1S1 20 6 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT5S2 22 6 sblock10514 ATACACGGCTCTCCTCTCT #rat_gr207294_libT1S2 19 5 sblock10514 ATACACGGCTCTCCTCTCTTC #rat_gr207296_libT1S2 21 5 sblock10514 GTCATACACGGCTCTCCTCTCT #rat_gr634499_libT5S2 22 4 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT5S1 22 4 sblock10514 GTCATACACGGCTCTCCTCTCTTC #rat_gr634500_libT1S1 24 3 sblock10514 TCATACACGGCTCTCCTCTCT #rat_gr822415_libT1S1 21 3 sblock10514 TCATACACGGCTCTCCTCTCT #rat_gr822415_libT1S2 21 3 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT4S2 20 3 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT5S1 20 3 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT4S1 22 3 sblock10514 CATACACGGCTCTCCTCTCTTCT #rat_gr307175_libT1S1 23 3 sblock10514 AGTCATACACGGCTCTCCTCT #rat_gr196683_libT1S1 21 2 sblock10514 AGTCATACACGGCTCTCCTCTC #rat_gr196684_libT5S2 22 2 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT3S1 19 2 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT3S2 19 2 sblock10514 GTCATACACGGCTCTCCTCTCT #rat_gr634499_libT4S1 22 2 sblock10514 GTCATACACGGCTCTCCTCTCT #rat_gr634499_libT4S2 22 2 sblock10514 TCATACACGGCTCTCCTCTC #rat_gr822414_libT1S1 20 2 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT4S1 20 2 sblock10514 CATACACGGCTCTCCTCTCT #rat_gr307172_libT5S2 20 2 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT3S1 22 2 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT3S2 22 2 sblock10514 ATACACGGCTCTCCTCTC #rat_gr207293_libT1S2 18 2 sblock10514 ATACACGGCTCTCCTCTCT #rat_gr207294_libT1S1 19 2 sblock10514 ATACACGGCTCTCCTCTCTTC #rat_gr207296_libT1S1 21 2 sblock10514 ACACGGCTCTCCTCTCTTC #rat_gr74936_libT1S1 19 2 sblock10514 AGTCATACACGGCTCTCC #rat_gr196680_libT4S1 18 1 sblock10514 AGTCATACACGGCTCTCCT #rat_gr196681_libT4S2 19 1 sblock10514 AGTCATACACGGCTCTCCTCTCT #rat_gr196685_libT3S1 23 1 sblock10514 GTCATACACGGCTCTCCT #rat_gr634495_libT5S2 18 1 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT5S1 19 1 sblock10514 GTCATACACGGCTCTCCTC #rat_gr634496_libT5S2 19 1 sblock10514 GTCATACACGGCTCTCCTCT #rat_gr634497_libT2S1 20 1 sblock10514 GTCATACACGGCTCTCCTCTC #rat_gr634498_libT4S2 21 1 sblock10514 GTCATACACGGCTCTCCTCTC #rat_gr634498_libT5S2 21 1 sblock10514 TCATACACGGCTCTCCTC #rat_gr822412_libT1S1 18 1 sblock10514 TCATACACGGCTCTCCTC #rat_gr822412_libT1S2 18 1 sblock10514 TCATACACGGCTCTCCTCT #rat_gr822413_libT1S1 19 1 sblock10514 TCATACACGGCTCTCCTCT #rat_gr822413_libT1S2 19 1 sblock10514 TCATACACGGCTCTCCTCTC #rat_gr822414_libT1S2 20 1 sblock10514 TCATACACGGCTCTCCTCTCTTC #rat_gr822416_libT3S2 23 1 sblock10514 TCATACACGGCTCTCCTCTCTTC #rat_gr822416_libT5S1 23 1 sblock10514 CATACACGGCTCTCCTCTC #rat_gr307171_libT3S1 19 1 sblock10514 CATACACGGCTCTCCTCTCTTC #rat_gr307174_libT4S2 22 1 sblock10514 CATACACGGCTCTCCTCTCTTCT #rat_gr307175_libT5S1 23 1 sblock10514 ATACACGGCTCTCCTCTC #rat_gr207293_libT1S1 18 1 sblock10514 ATACACGGCTCTCCTCTCTT #rat_gr207295_libT1S2 20 1 sblock10514 ATACACGGCTCTCCTCTCTTCT #rat_gr207297_libT1S2 22 1 sblock10514 -------------------GATACTTGGAGAGAGGCTGGCCGTGATGAATTCGATTCATCTAAACGAGTCATACACGGCTCTCCTCTCTTCTAGTGTC------------------ humanZ28p83 CTCACCAGTGTTCATGTGTGGTACTTGGAGAGAGGCTGGCCGTGATGAATTCGATTCATCAAAGCGAGTCATACACGGCTCTCCTCTCTTTTAGTGTCAAATTCTGCCTCGGAGGG mouseZ31p83 --------------------------GGAGAGAGGCTGGCCGTGATGAATTCGATTCATCTAAACGAGTCATACACGGCTCTCCTCTCTTC------------------------- ********************************** ** ************************** sblock10514 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054372 ENSRNOG00000036249 rno-mir-485 sblock10514 ((((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))))) 1.000 -40.80 # humanZ28p83 (((.((((.((.......((..(((..((((((((..((((((((((.(((((...........)))))))).)))))))..))))))))..)))..))......)))).)).))) 0.989 -45.22 # mouseZ31p83 (((((((((..((((((((((.(((((...........)))))))).)))))))..))))))))) 1.000 -32.80 # #sblock10514 chromosome:6:134416384:134416462:1 Same_strand|Boundary_non-coding|ENSRNOT00000054372|ENSRNOG00000036249 ## Same_strand|Exonic_non-coding|ENSRNOT00000054372|ENSRNOG00000036249 ## ENSRNOG00000036249|miRNA|rno-mir-485|rno-mir-485 [Source:miRBase;Acc:MI0003549] ## {MIR: rno-mir-485} #humanZ28p83 chromosome:14:100591487:100591602:1 Same_strand|Boundary_non-coding|ENST00000385292|ENSG00000208027|miRNA|hsa-mir-485 [Source:miRBase;Acc:MI0002469] ## {MIR: hsa-mir-485} #mouseZ31p83 chromosome:12:110973089:110973207:1 Same_strand|Boundary_non-coding|ENSMUST00000093620|ENSMUSG00000070128|miRNA|mmu-mir-485 [Source:miRBase;Acc:MI0003492] ## {Repeats: trf 0 class=trf} ## {MIR: mmu-mir-485} ========== sblock10515 (miRBase rno-mir-154) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH] ========== #randfold sblock10515: 0.001 randfold humanZ31p83_sblock10515: 0.001 randfold mouseZ32p83_sblock10515: 0.001 #forester humanZ31p83_sblock10515: 0.763299 forester mouseZ32p83_sblock10515: 1 #identity: 97.94 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT1S2 21 141 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT1S2 18 137 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT1S2 19 126 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT1S1 18 125 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT1S1 19 114 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT1S1 21 109 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT1S2 23 59 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT1S1 23 23 sblock10515 TAGGTTATCCGTGTTGCCTT #rat_gr783600_libT1S1 20 18 sblock10515 TAGGTTATCCGTGTTGCCTT #rat_gr783600_libT1S2 20 13 sblock10515 TAGGTTATCCGTGTTGCCTTCG #rat_gr783602_libT1S2 22 12 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT5S2 19 9 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT3S2 18 8 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT5S2 18 5 sblock10515 TAGGTTATCCGTGTTGCCTTCG #rat_gr783602_libT1S1 22 5 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT3S1 23 5 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT3S2 23 5 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT3S2 19 4 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT5S1 19 4 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT3S1 21 4 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT3S1 19 3 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT2S1 21 3 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT4S1 21 3 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT5S1 21 3 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT5S2 23 3 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT2S1 18 2 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT2S2 21 2 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT3S2 21 2 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT5S2 21 2 sblock10515 TAGGTTATCCGTGTTGCCTTCG #rat_gr783602_libT2S1 22 2 sblock10515 AGGTTATCCGTGTTGCCTTC #rat_gr193375_libT1S2 20 2 sblock10515 AGGTTATCCGTGTTGCCTTCGC #rat_gr193376_libT1S1 22 2 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT2S2 18 1 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT3S1 18 1 sblock10515 TAGGTTATCCGTGTTGCC #rat_gr783598_libT5S1 18 1 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT2S1 19 1 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT2S2 19 1 sblock10515 TAGGTTATCCGTGTTGCCT #rat_gr783599_libT4S1 19 1 sblock10515 TAGGTTATCCGTGTTGCCTT #rat_gr783600_libT4S2 20 1 sblock10515 TAGGTTATCCGTGTTGCCTTC #rat_gr783601_libT4S2 21 1 sblock10515 TAGGTTATCCGTGTTGCCTTCG #rat_gr783602_libMirbase_rno-miR-154 22 1 sblock10515 TAGGTTATCCGTGTTGCCTTCG #rat_gr783602_libT3S2 22 1 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT2S1 23 1 sblock10515 TAGGTTATCCGTGTTGCCTTCGC #rat_gr783603_libT5S1 23 1 sblock10515 TAGGTTATCCGTGTTGCCTTCGCT #rat_gr783604_libT1S2 24 1 sblock10515 AGGTTATCCGTGTTGCCT #rat_gr193374_libT1S2 18 1 sblock10515 AGGTTATCCGTGTTGCCTTC #rat_gr193375_libT1S1 20 1 sblock10515 AGGTTATCCGTGTTGCCTTC #rat_gr193375_libT3S2 20 1 sblock10515 AGGTTATCCGTGTTGCCTTCGC #rat_gr193376_libT3S1 22 1 sblock10515 GTTGCCTTCGCTTTATTCG #rat_gr661453_libT1S2 19 1 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT1S1 22 154 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT1S2 22 134 sblock10515 AATCATACACGGTTGACCTA #rat_gr60304_libT1S1 20 63 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT1S1 19 60 sblock10515 AATCATACACGGTTGACCTA #rat_gr60304_libT1S2 20 42 sblock10515 AATCATACACGGTTGACC #rat_gr60302_libT1S1 18 41 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT1S2 19 39 sblock10515 AATCATACACGGTTGACC #rat_gr60302_libT1S2 18 33 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT1S1 21 24 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT1S2 21 13 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT5S2 22 9 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT2S2 22 6 sblock10515 AATCATACACGGTTGACCTA #rat_gr60304_libT5S2 20 5 sblock10515 AATCATACACGGTTGACC #rat_gr60302_libT5S2 18 4 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT5S2 19 4 sblock10515 AATCATACACGGTTGACCTATTT #rat_gr60307_libT1S1 23 4 sblock10515 AATCATACACGGTTGACCTA #rat_gr60304_libT5S1 20 3 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT3S2 22 3 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT2S1 19 2 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT2S1 21 2 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT2S2 21 2 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT5S1 21 2 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT3S1 22 2 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT4S1 22 2 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT5S1 22 2 sblock10515 TGACGAATCATACACGGTTGAC #rat_gr936451_libT1S2 22 1 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT3S1 19 1 sblock10515 AATCATACACGGTTGACCT #rat_gr60303_libT4S1 19 1 sblock10515 AATCATACACGGTTGACCTA #rat_gr60304_libT2S1 20 1 sblock10515 AATCATACACGGTTGACCTAT #rat_gr60305_libT5S2 21 1 sblock10515 AATCATACACGGTTGACCTATT #rat_gr60306_libT4S2 22 1 sblock10515 ATCATACACGGTTGACCTATT #rat_gr216691_libT1S2 21 1 sblock10515 ATACACGGTTGACCTATT #rat_gr207316_libT1S2 18 1 sblock10515 GCGGTGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAA----- humanZ31p83 -TGGTACTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAAATCCC mouseZ32p83 --GGTGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGTACC------- *** ************************************* ************************************** sblock10515 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053723 ENSRNOG00000035600 rno-mir-154 sblock10515 ..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).)))))).. 1.000 -36.90 # humanZ31p83 (((((((.((((((((((((.((((((((...((((.......)))).....)).)))))).)))))))))))).)))))))...... 0.983 -37.00 # mouseZ32p83 ((((((.((((((((((((.((((((....((((.((.......))))))....)))))).)))))))))))).)))))) 0.928 -34.30 # #sblock10515 chromosome:6:134419671:134419754:1 Same_strand|Boundary_non-coding|ENSRNOT00000053723|ENSRNOG00000035600 ## Same_strand|Exonic_non-coding|ENSRNOT00000053723|ENSRNOG00000035600 ## ENSRNOG00000035600|miRNA|rno-mir-154|rno-mir-154 [Source:miRBase;Acc:MI0000923] ## {MIR: rno-mir-154} #humanZ31p83 chromosome:14:100595846:100595933:1 Same_strand|Boundary_non-coding|ENST00000385243|ENSG00000207978|miRNA|hsa-mir-154 [Source:miRBase;Acc:MI0000480] ## {MIR: hsa-mir-154} #mouseZ32p83 chromosome:12:110976636:110976715:1 Same_strand|Exonic_non-coding|ENSMUST00000083514|ENSMUSG00000065448|miRNA|mmu-mir-154 [Source:miRBase;Acc:MI0000176] ## {MIR: mmu-mir-154} ========== sblock10517 (miRBase rno-mir-377) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10517: 0.001 randfold humanZ34p83_sblock10517: 0.001 randfold mouseZ38p83_sblock10517: 0.001 #forester humanZ34p83_sblock10517: 0.946602 forester mouseZ38p83_sblock10517: 0.968302 #identity: 96.44 sblock10517 AGAGGTTGCCCTTGGTGAATTC #rat_gr145060_libT1S2 22 4 sblock10517 AGAGGTTGCCCTTGGTGAA #rat_gr145058_libT1S2 19 3 sblock10517 AGAGGTTGCCCTTGGTGAA #rat_gr145058_libT1S1 19 2 sblock10517 AGAGGTTGCCCTTGGTGAAT #rat_gr145059_libT1S2 20 2 sblock10517 AGAGGTTGCCCTTGGTGA #rat_gr145057_libT1S2 18 1 sblock10517 AGGTTGCCCTTGGTGAATT #rat_gr193781_libT1S1 19 1 sblock10517 AGGTTGCCCTTGGTGAATTC #rat_gr193782_libT1S1 20 1 sblock10517 AGGTTGCCCTTGGTGAATTC #rat_gr193782_libT1S2 20 1 sblock10517 AGGTTGCCCTTGGTGAATTC #rat_gr193782_libT5S2 20 1 sblock10517 TGAATCACACAAAGGCAAC #rat_gr929636_libT1S1 19 7 sblock10517 TGAATCACACAAAGGCAACT #rat_gr929637_libT1S1 20 7 sblock10517 TGAATCACACAAAGGCAAC #rat_gr929636_libT1S2 19 6 sblock10517 ATCACACAAAGGCAACTTTTGG #rat_gr214006_libT1S1 22 6 sblock10517 TGAATCACACAAAGGCAACT #rat_gr929637_libT1S2 20 3 sblock10517 TGAATCACACAAAGGCAACTT #rat_gr929638_libT1S1 21 2 sblock10517 TGAATCACACAAAGGCAACTTTT #rat_gr929639_libT1S1 23 2 sblock10517 ATCACACAAAGGCAACTT #rat_gr214002_libT1S1 18 2 sblock10517 ATCACACAAAGGCAACTT #rat_gr214002_libT1S2 18 2 sblock10517 ATCACACAAAGGCAACTTTTGG #rat_gr214006_libT1S2 22 2 sblock10517 TGAATCACACAAAGGCAAC #rat_gr929636_libT3S2 19 1 sblock10517 TGAATCACACAAAGGCAAC #rat_gr929636_libT5S2 19 1 sblock10517 TGAATCACACAAAGGCAACT #rat_gr929637_libT3S2 20 1 sblock10517 TGAATCACACAAAGGCAACTT #rat_gr929638_libT1S2 21 1 sblock10517 TGAATCACACAAAGGCAACTTTT #rat_gr929639_libT5S2 23 1 sblock10517 AATCACACAAAGGCAACT #rat_gr59897_libT1S1 18 1 sblock10517 AATCACACAAAGGCAACT #rat_gr59897_libT1S2 18 1 sblock10517 AATCACACAAAGGCAACTTTTGG #rat_gr59898_libT1S1 23 1 sblock10517 ATCACACAAAGGCAACTT #rat_gr214002_libT3S1 18 1 sblock10517 ATCACACAAAGGCAACTTT #rat_gr214003_libT1S1 19 1 sblock10517 ATCACACAAAGGCAACTTTT #rat_gr214004_libT1S2 20 1 sblock10517 ATCACACAAAGGCAACTTTTG #rat_gr214005_libT3S2 21 1 sblock10517 ATCACACAAAGGCAACTTTTG #rat_gr214005_libT5S1 21 1 sblock10517 ATCACACAAAGGCAACTTTTGG #rat_gr214006_libMirbase_rno-miR-377 22 1 sblock10517 ATCACACAAAGGCAACTTTTGGT #rat_gr214007_libT1S2 23 1 sblock10517 -------------------CTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGGTTGAG------------------ humanZ34p83 CCCGTGCTGATGTTTGACCCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAATCCTGCTTGGG mouseZ38p83 CCTGTGCTGACGTTTGATTCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAAGCCTGCTTGGG ************************************* **************************** ***** sblock10517 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053733 ENSRNOG00000035610 rno-mir-377 sblock10517 ((..(.(((((((((((.(((((((.(((((.........).)))))))).))).))))))))))).)..)) 1.000 -29.00 # humanZ34p83 ((((.((....((((((..((..(((((((((((((.((((((.((((((.........)).))))))).))).)))))))))))))..))..))))))...)).)))) 1.000 -45.80 # mouseZ38p83 ((((.((.....((((((.((..(((((((((((((.((((((.((((((.........)).))))))).))).)))))))))))))..)).))))))....)).)))) 0.992 -41.90 # #sblock10517 chromosome:6:134421775:134421846:1 Same_strand|Boundary_non-coding|ENSRNOT00000053733|ENSRNOG00000035610 ## Same_strand|Exonic_non-coding|ENSRNOT00000053733|ENSRNOG00000035610 ## ENSRNOG00000035610|miRNA|rno-mir-377|rno-mir-377 [Source:miRBase;Acc:MI0003487] ## {MIR: rno-mir-377} #humanZ34p83 chromosome:14:100598120:100598228:1 Same_strand|Boundary_non-coding|ENST00000362145|ENSG00000199015|miRNA|hsa-mir-377 [Source:miRBase;Acc:MI0000785] ## {MIR: hsa-mir-377} #mouseZ38p83 chromosome:12:110978699:110978807:1 Same_strand|Boundary_non-coding|ENSMUST00000083504|ENSMUSG00000065438|miRNA|mmu-mir-377 [Source:miRBase;Acc:MI0000794] ## {MIR: mmu-mir-377} ========== sblock10518 (miRBase rno-mir-541) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK] ========== #randfold sblock10518: 0.001 randfold human48p83_sblock10518: 0.001 randfold mouseZ43p83_sblock10518: 0.003 #forester human48p83_sblock10518: 0.315682 forester mouseZ43p83_sblock10518: 0.922411 #identity: 75.69 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT1S1 24 1174 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT1S1 26 857 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT1S2 24 820 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT1S2 26 748 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT1S1 18 483 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT1S1 19 462 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT1S1 22 443 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT1S2 19 383 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT1S2 18 312 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT1S2 22 293 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT1S1 20 236 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT1S2 20 182 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT1S1 23 149 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT1S1 21 120 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT1S2 23 101 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT1S2 21 95 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT5S2 24 58 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT5S1 24 45 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT5S1 26 42 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT5S2 18 31 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT5S2 22 28 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT5S1 18 24 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT5S2 26 23 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT5S1 19 20 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT3S2 19 17 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT5S2 19 17 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT3S2 24 15 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT3S2 18 13 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT5S2 23 13 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT5S1 20 12 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT4S1 24 12 sblock10518 AGGGATTCTGATGTT----------GGTCACACTC #rat_gr186066_libT1S1 25 12 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT3S2 22 11 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT5S1 22 11 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT2S1 18 10 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT2S1 22 10 sblock10518 AAGGGATTCTGATGTT----------GGTCACACT #rat_gr52097_libT1S1 25 10 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT3S1 18 9 sblock10518 AAGGGATTCTGATGTT----------GGTCACACT #rat_gr52097_libT1S2 25 9 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT4S1 18 8 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT3S2 21 8 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT4S2 19 7 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT4S1 22 7 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT5S1 23 7 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT4S2 24 7 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT5S2 20 6 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT2S1 21 6 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT3S1 22 6 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT3S1 21 5 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT5S2 21 5 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT3S2 23 5 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT2S1 24 5 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT3S1 24 5 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT4S1 26 5 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT4S2 26 5 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT2S1 19 4 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT3S1 19 4 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT3S2 20 4 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT4S2 22 4 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT3S2 26 4 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT3S1 20 3 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT4S1 21 3 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT5S1 21 3 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT2S1 23 3 sblock10518 AGGGATTCTGATGTT----------GGTCAC #rat_gr186062_libT1S1 21 3 sblock10518 AGGGATTCTGATGTT----------GGTCACACTC #rat_gr186066_libT1S2 25 3 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT2S2 18 2 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT2S1 20 2 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT4S1 20 2 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT2S2 23 2 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT4S1 23 2 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT2S1 26 2 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT3S1 26 2 sblock10518 AGGGATTCTGATGTT----------GGT #rat_gr186060_libT1S1 18 2 sblock10518 AGGGATTCTGATGTT----------GGT #rat_gr186060_libT1S2 18 2 sblock10518 AGGGATTCTGATGTT----------GGTCACA #rat_gr186063_libT1S1 22 2 sblock10518 AGGGATTCTGATGTT----------GGTCACAC #rat_gr186064_libT1S1 23 2 sblock10518 AGGGATTCTGATGTT----------GGTCACAC #rat_gr186064_libT1S2 23 2 sblock10518 AGGGATTCTGATGTT----------GGTCACACT #rat_gr186065_libT4S2 24 2 sblock10518 GAAGGGATTCTGATGTT----------GG #rat_gr487623_libT1S1 19 1 sblock10518 AAGGGATTCTGATGTT----------GG #rat_gr52090_libT4S2 18 1 sblock10518 AAGGGATTCTGATGTT----------GGT #rat_gr52091_libT2S2 19 1 sblock10518 AAGGGATTCTGATGTT----------GGTC #rat_gr52092_libT4S2 20 1 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT2S2 21 1 sblock10518 AAGGGATTCTGATGTT----------GGTCA #rat_gr52093_libT4S2 21 1 sblock10518 AAGGGATTCTGATGTT----------GGTCAC #rat_gr52094_libT2S2 22 1 sblock10518 AAGGGATTCTGATGTT----------GGTCACA #rat_gr52095_libT3S1 23 1 sblock10518 AAGGGATTCTGATGTT----------GGTCACAC #rat_gr52096_libT2S2 24 1 sblock10518 AAGGGATTCTGATGTT----------GGTCACACT #rat_gr52097_libMirbase_rno-miR-541 25 1 sblock10518 AAGGGATTCTGATGTT----------GGTCACACT #rat_gr52097_libT5S2 25 1 sblock10518 AAGGGATTCTGATGTT----------GGTCACACTC #rat_gr52098_libT2S2 26 1 sblock10518 AGGGATTCTGATGTT----------GGT #rat_gr186060_libT4S1 18 1 sblock10518 AGGGATTCTGATGTT----------GGTC #rat_gr186061_libT1S1 19 1 sblock10518 AGGGATTCTGATGTT----------GGTCAC #rat_gr186062_libT1S2 21 1 sblock10518 AGGGATTCTGATGTT----------GGTCACA #rat_gr186063_libT4S1 22 1 sblock10518 ATTCTGATGTT----------GGTCACACTCC #rat_gr242876_libT1S1 22 1 sblock10518 ATTCTGATGTT----------GGTCACACTCC #rat_gr242876_libT1S2 22 1 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT1S1 23 76 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT1S2 23 72 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT1S1 21 64 sblock10518 TGGCGAACACAGAATCCATACTC #rat_gr1013315_libT1S1 23 61 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT1S2 21 50 sblock10518 TGGCGAACACAGAATCCATACTC #rat_gr1013315_libT1S2 23 41 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT1S1 20 37 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT1S2 20 27 sblock10518 TGGCGAACACAGAATCCA #rat_gr1013311_libT1S2 18 25 sblock10518 TGGCGAACACAGAATCCATAC #rat_gr1013313_libT1S1 21 21 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT1S2 19 18 sblock10518 TGGCGAACACAGAATCCA #rat_gr1013311_libT1S1 18 18 sblock10518 TGGCGAACACAGAATCCATAC #rat_gr1013313_libT1S2 21 18 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT1S1 19 15 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT5S2 23 14 sblock10518 TGGCGAACACAGAATCCAT #rat_gr1013312_libT1S1 19 11 sblock10518 AGTGGCGAACACAGAATCCATACTC #rat_gr200697_libT1S1 25 10 sblock10518 TGGCGAACACAGAATCCAT #rat_gr1013312_libT1S2 19 8 sblock10518 AGTGGCGAACACAGAATCCATACTC #rat_gr200697_libT1S2 25 7 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT2S1 20 6 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT1S2 22 6 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT3S2 23 5 sblock10518 AGTGGCGAACACAGAATC #rat_gr200691_libT1S1 18 4 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT5S2 20 4 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT3S1 21 4 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT5S2 21 4 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT5S1 23 4 sblock10518 AGTGGCGAACACAGAATC #rat_gr200691_libT1S2 18 3 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT4S1 19 3 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT5S1 20 3 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT5S2 22 3 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT2S2 19 2 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT2S2 20 2 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT3S1 20 2 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT3S2 20 2 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT4S2 20 2 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT2S1 21 2 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT3S2 21 2 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT4S1 21 2 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT3S2 22 2 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT4S1 22 2 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT3S1 23 2 sblock10518 TGGCGAACACAGAATCCATACT #rat_gr1013314_libT1S2 22 2 sblock10518 GGCGAACACAGAATCCATAC #rat_gr597429_libT1S1 20 2 sblock10518 TGAGTGGCGAACACAGAATCC #rat_gr952403_libT1S2 21 1 sblock10518 AGTGGCGAACACAGAATC #rat_gr200691_libT4S2 18 1 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT2S1 19 1 sblock10518 AGTGGCGAACACAGAATCC #rat_gr200692_libT5S2 19 1 sblock10518 AGTGGCGAACACAGAATCCA #rat_gr200693_libT4S1 20 1 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT2S2 21 1 sblock10518 AGTGGCGAACACAGAATCCAT #rat_gr200694_libT4S2 21 1 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT1S1 22 1 sblock10518 AGTGGCGAACACAGAATCCATA #rat_gr200695_libT2S1 22 1 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT2S1 23 1 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT2S2 23 1 sblock10518 AGTGGCGAACACAGAATCCATAC #rat_gr200696_libT4S1 23 1 sblock10518 AGTGGCGAACACAGAATCCATACTC #rat_gr200697_libT5S1 25 1 sblock10518 GTGGCGAACACAGAATCCATAC #rat_gr650599_libT1S1 22 1 sblock10518 GTGGCGAACACAGAATCCATACTC #rat_gr650600_libT1S1 24 1 sblock10518 GTGGCGAACACAGAATCCATACTC #rat_gr650600_libT5S2 24 1 sblock10518 TGGCGAACACAGAATCCA #rat_gr1013311_libT5S1 18 1 sblock10518 TGGCGAACACAGAATCCAT #rat_gr1013312_libT4S2 19 1 sblock10518 TGGCGAACACAGAATCCATAC #rat_gr1013313_libT2S1 21 1 sblock10518 TGGCGAACACAGAATCCATAC #rat_gr1013313_libT3S1 21 1 sblock10518 TGGCGAACACAGAATCCATACT #rat_gr1013314_libT1S1 22 1 sblock10518 TGGCGAACACAGAATCCATACTC #rat_gr1013315_libT2S1 23 1 sblock10518 TGGCGAACACAGAATCCATACTC #rat_gr1013315_libT4S2 23 1 sblock10518 TGGCGAACACAGAATCCATACTC #rat_gr1013315_libT5S1 23 1 sblock10518 GGCGAACACAGAATCCATAC #rat_gr597429_libT1S2 20 1 sblock10518 --------------------GCCAAAATCAGAGAAGGGATTCTGATGTT----------GGTCACACTCCAAGAATTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGC----------------- human48p83 ---------------------------------AAGGGATTCTGATGTTCACCTACTAGAACCACCTACTAAAACCACCTACACAGGTTGAGCATTCCTAATCCAAA------------------------------ mouseZ43p83 AGAAGCCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTT----------GGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCT **************** *** * ** * * * ** * * * * ****** * sblock10518 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054594 ENSRNOG00000036486 rno-mir-541 sblock10518 ((((.((.(((((...((((((((.(((( .(((((.(.................).))))).))))))))))))...))))).)).)))) 1.000 -36.43 # human48p83 ...(((((..(((((((((((..(((...................)))...)))).)))))))...)))))... 0.533 -15.61 # mouseZ43p83 .....((....((.(((...((((.((.(((((...((((((((.(((( .(((((((((...))))..........))))).))))))))))))...))))).)).))))...)))))..))..... 0.966 -42.50 # #sblock10518 chromosome:6:134423740:134423829:1 Same_strand|Exonic_non-coding|ENSRNOT00000054594|ENSRNOG00000036486 ## ENSRNOG00000036486|miRNA|rno-mir-541|rno-mir-541 [Source:miRBase;Acc:MI0003527] ## {MIR: rno-mir-541} #human48p83 chromosome:2:36085568:36085697:1 intergenic ## {Repeats: AluJo -1 class=SINE/Alu,MER5B 1 class=DNA/MER1_type,trf 0 class=trf,Tigger4(Zombi) 1 class=DNA/MER2_type} #mouseZ43p83 chromosome:12:110980599:110980725:1 Same_strand|Boundary_non-coding|ENSMUST00000102097|ENSMUSG00000076052|miRNA|mmu-mir-541 [Source:miRBase;Acc:MI0003521] ## {MIR: mmu-mir-541} ========== sblock10519 (miRBase rno-mir-409) [miRNAknown_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK] ========== #randfold sblock10519: 0.001 randfold human56p83_sblock10519: 0.003 randfold mouseZ46p83_sblock10519: 0.001 #forester human56p83_sblock10519: 0.972111 forester mouseZ46p83_sblock10519: 1 #identity: 97.33 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT1S1 24 510 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT1S1 19 395 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT1S2 19 325 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT1S2 24 316 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT1S1 21 273 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT1S2 21 264 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT1S1 18 187 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT1S2 18 129 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libT1S2 20 86 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libT1S1 20 78 sblock10519 AGGTTACCCGAGCAACTTTGCA #rat_gr193220_libT1S1 22 74 sblock10519 AGGTTACCCGAGCAACTTTGCA #rat_gr193220_libT1S2 22 45 sblock10519 AGGTTACCCGAGCAACTTTGCATCT #rat_gr193223_libT1S1 25 20 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT3S2 19 9 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT5S2 19 8 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT5S2 18 7 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT3S2 18 6 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT3S1 19 6 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT5S1 19 6 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT5S2 21 6 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT5S2 24 6 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT2S1 21 4 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT5S1 21 4 sblock10519 AGGTTACCCGAGCAACTTTGCATCT #rat_gr193223_libT1S2 25 4 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT3S1 18 3 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT2S1 19 3 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT2S1 24 3 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT3S2 24 3 sblock10519 AGGTTACCCGAGCAACTTTGCATCT #rat_gr193223_libT3S2 25 3 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT4S2 19 2 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libT5S1 20 2 sblock10519 AGGTTACCCGAGCAACTTTGCA #rat_gr193220_libT5S1 22 2 sblock10519 AGGTTACCCGAGCAACTTTGCA #rat_gr193220_libT5S2 22 2 sblock10519 AGGTTACCCGAGCAACTTTGCAT #rat_gr193221_libT1S1 23 2 sblock10519 AGGTTACCCGAGCAACTTTGCAT #rat_gr193221_libT1S2 23 2 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT3S1 24 2 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT5S1 24 2 sblock10519 GGTTACCCGAGCAACTTTGC #rat_gr623463_libT1S2 20 2 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT2S1 18 1 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT2S2 18 1 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT4S2 18 1 sblock10519 AGGTTACCCGAGCAACTT #rat_gr193216_libT5S1 18 1 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT2S2 19 1 sblock10519 AGGTTACCCGAGCAACTTT #rat_gr193217_libT4S1 19 1 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libMirbase_rno-miR-409-5p 20 1 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libT3S2 20 1 sblock10519 AGGTTACCCGAGCAACTTTG #rat_gr193218_libT5S2 20 1 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT2S2 21 1 sblock10519 AGGTTACCCGAGCAACTTTGC #rat_gr193219_libT3S2 21 1 sblock10519 AGGTTACCCGAGCAACTTTGCA #rat_gr193220_libT2S1 22 1 sblock10519 AGGTTACCCGAGCAACTTTGCAT #rat_gr193221_libT5S2 23 1 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT4S1 24 1 sblock10519 AGGTTACCCGAGCAACTTTGCATC #rat_gr193222_libT4S2 24 1 sblock10519 GTTACCCGAGCAACTTTGCATC #rat_gr656558_libT1S1 22 1 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT1S1 22 578 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT1S2 22 413 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT1S1 21 330 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT1S1 21 267 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT1S2 21 230 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT1S2 21 203 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libT1S1 20 127 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT1S1 19 79 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT1S1 23 78 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libT1S2 20 75 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT1S2 23 71 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT1S2 19 55 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT1S1 22 49 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT1S1 20 42 sblock10519 AATGTTGCTCGGTGAACCC #rat_gr64368_libT1S1 19 37 sblock10519 GAATGTTGCTCGGTGAAC #rat_gr490401_libT1S1 18 36 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT1S2 22 34 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT1S2 20 32 sblock10519 GAATGTTGCTCGGTGAAC #rat_gr490401_libT1S2 18 24 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT5S2 23 23 sblock10519 AATGTTGCTCGGTGAACCC #rat_gr64368_libT1S2 19 22 sblock10519 AATGTTGCTCGGTGAACC #rat_gr64367_libT1S1 18 20 sblock10519 AATGTTGCTCGGTGAACC #rat_gr64367_libT1S2 18 17 sblock10519 CGAATGTTGCTCGGTGAAC #rat_gr388649_libT1S1 19 13 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT5S1 22 13 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT5S2 22 12 sblock10519 CGAATGTTGCTCGGTGAACCC #rat_gr388651_libT1S1 21 11 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT3S2 22 11 sblock10519 AATGTTGCTCGGTGAACCCCTT #rat_gr64371_libT1S1 22 11 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT5S1 23 10 sblock10519 CGAATGTTGCTCGGTGAACC #rat_gr388650_libT1S1 20 8 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT5S2 22 8 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT3S2 21 8 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT3S1 22 8 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT5S2 21 8 sblock10519 AATGTTGCTCGGTGAACCCCTTT #rat_gr64372_libT1S1 23 8 sblock10519 CGAATGTTGCTCGGTGAACC #rat_gr388650_libT1S2 20 7 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT5S1 21 7 sblock10519 AATGTTGCTCGGTGAACCCCTT #rat_gr64371_libT1S2 22 7 sblock10519 CGAATGTTGCTCGGTGAA #rat_gr388648_libT1S1 18 6 sblock10519 CGAATGTTGCTCGGTGAACCC #rat_gr388651_libT1S2 21 6 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT5S1 22 6 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT5S2 21 6 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT4S1 22 6 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libT5S2 20 6 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT3S1 21 6 sblock10519 CGAATGTTGCTCGGTGAAC #rat_gr388649_libT1S2 19 5 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT3S1 21 5 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT4S2 22 5 sblock10519 GAATGTTGCTCGGTGAACCCCTT #rat_gr490406_libT1S1 23 5 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT5S1 21 5 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT3S2 23 4 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT3S1 19 4 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT5S2 20 4 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT4S1 21 4 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT2S1 22 4 sblock10519 CGAATGTTGCTCGGTGAA #rat_gr388648_libT1S2 18 3 sblock10519 CGAATGTTGCTCGGTGAAC #rat_gr388649_libT5S2 19 3 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT3S2 22 3 sblock10519 GAATGTTGCTCGGTGAAC #rat_gr490401_libT3S2 18 3 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libT3S1 20 3 sblock10519 AGGACGAATGTTGCTCGGT #rat_gr172309_libT1S1 19 2 sblock10519 AGGACGAATGTTGCTCGGTGA #rat_gr172310_libT1S2 21 2 sblock10519 CGAATGTTGCTCGGTGAA #rat_gr388648_libT5S2 18 2 sblock10519 CGAATGTTGCTCGGTGAAC #rat_gr388649_libT5S1 19 2 sblock10519 CGAATGTTGCTCGGTGAACC #rat_gr388650_libT5S1 20 2 sblock10519 CGAATGTTGCTCGGTGAACC #rat_gr388650_libT5S2 20 2 sblock10519 CGAATGTTGCTCGGTGAACCC #rat_gr388651_libT2S1 21 2 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT2S1 22 2 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT3S1 22 2 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT3S1 23 2 sblock10519 GAATGTTGCTCGGTGAACCCCTT #rat_gr490406_libT1S2 23 2 sblock10519 GAATGTTGCTCGGTGAACCCCTT #rat_gr490406_libT4S2 23 2 sblock10519 GAATGTTGCTCGGTGAACCCCTTT #rat_gr490407_libT1S1 24 2 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libT5S1 20 2 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT3S2 21 2 sblock10519 AATGTTGCTCGGTGAACCCCT #rat_gr64370_libT4S1 21 2 sblock10519 AATGTTGCTCGGTGAACCCCTTT #rat_gr64372_libT5S2 23 2 sblock10519 TGTTGCTCGGTGAACCCCT #rat_gr1093125_libT1S1 19 2 sblock10519 ACGAATGTTGCTCGGTGA #rat_gr110852_libT1S2 18 1 sblock10519 ACGAATGTTGCTCGGTGAA #rat_gr110853_libT1S2 19 1 sblock10519 ACGAATGTTGCTCGGTGAACC #rat_gr110854_libT1S1 21 1 sblock10519 ACGAATGTTGCTCGGTGAACCC #rat_gr110855_libT1S2 22 1 sblock10519 CGAATGTTGCTCGGTGAA #rat_gr388648_libT5S1 18 1 sblock10519 CGAATGTTGCTCGGTGAAC #rat_gr388649_libT2S2 19 1 sblock10519 CGAATGTTGCTCGGTGAACCC #rat_gr388651_libT4S1 21 1 sblock10519 CGAATGTTGCTCGGTGAACCC #rat_gr388651_libT5S2 21 1 sblock10519 CGAATGTTGCTCGGTGAACCCC #rat_gr388652_libT4S2 22 1 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT2S1 23 1 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT2S2 23 1 sblock10519 CGAATGTTGCTCGGTGAACCCCT #rat_gr388653_libT4S1 23 1 sblock10519 CGAATGTTGCTCGGTGAACCCCTT #rat_gr388654_libT1S1 24 1 sblock10519 CGAATGTTGCTCGGTGAACCCCTT #rat_gr388654_libT1S2 24 1 sblock10519 CGAATGTTGCTCGGTGAACCCCTT #rat_gr388654_libT5S2 24 1 sblock10519 CGAATGTTGCTCGGTGAACCCCTTT #rat_gr388655_libT1S1 25 1 sblock10519 GAATGTTGCTCGGTGAAC #rat_gr490401_libT3S1 18 1 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT3S2 19 1 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT4S1 19 1 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT4S2 19 1 sblock10519 GAATGTTGCTCGGTGAACC #rat_gr490402_libT5S1 19 1 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT2S1 20 1 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT3S2 20 1 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT4S2 20 1 sblock10519 GAATGTTGCTCGGTGAACCC #rat_gr490403_libT5S1 20 1 sblock10519 GAATGTTGCTCGGTGAACCCC #rat_gr490404_libT4S2 21 1 sblock10519 GAATGTTGCTCGGTGAACCCCT #rat_gr490405_libT2S2 22 1 sblock10519 GAATGTTGCTCGGTGAACCCCTT #rat_gr490406_libT3S1 23 1 sblock10519 GAATGTTGCTCGGTGAACCCCTT #rat_gr490406_libT5S2 23 1 sblock10519 AATGTTGCTCGGTGAACC #rat_gr64367_libT2S1 18 1 sblock10519 AATGTTGCTCGGTGAACC #rat_gr64367_libT3S1 18 1 sblock10519 AATGTTGCTCGGTGAACC #rat_gr64367_libT4S1 18 1 sblock10519 AATGTTGCTCGGTGAACCC #rat_gr64368_libT5S2 19 1 sblock10519 AATGTTGCTCGGTGAACCCC #rat_gr64369_libMirbase_rno-miR-409-3p 20 1 sblock10519 AATGTTGCTCGGTGAACCCCTT #rat_gr64371_libT2S2 22 1 sblock10519 AATGTTGCTCGGTGAACCCCTTT #rat_gr64372_libT1S2 23 1 sblock10519 AATGTTGCTCGGTGAACCCCTTT #rat_gr64372_libT3S1 23 1 sblock10519 AATGTTGCTCGGTGAACCCCTTTTC #rat_gr64373_libT1S1 25 1 sblock10519 ATGTTGCTCGGTGAACCCC #rat_gr238804_libT1S2 19 1 sblock10519 ATGTTGCTCGGTGAACCCCT #rat_gr238805_libT3S1 20 1 sblock10519 TGTTGCTCGGTGAACCCC #rat_gr1093124_libT1S1 18 1 sblock10519 GTTGCTCGGTGAACCCCT #rat_gr661524_libT1S1 18 1 sblock10519 ------------GGTACTCGGAGAGAGGTTACCCGAGCAACTTTGCATCTGGAGGACGAATGTTGCTCGGTGAACCCCTTTTCGGTATC------------------- human56p83 GAGCCTCTCCATGGTACTCGGGGAGAGGTTACCCGAGCAACTTTGCATCTGGACGACGAATGTTGCTCGGTGAACCCCTTTTCGGTATCAAATTCCACCAGGGAGGCC mouseZ46p83 GAGCCTCTCCGTGGTACTCGGAGAGAGGTTACCCGAGCAACTTTGCATCTGGAGGACGAATGTTGCTCGGTGAACCCCTTTTCGGTATCAAATCCCTCCAGGGAGGCC ********* ******************************* *********************************** sblock10519 ....> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >.... #ENSRNOT00000053696 ENSRNOG00000035573 rno-mir-409 sblock10519 (((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))) 1.000 -36.40 # human56p83 ..(((((((..((((((.((..(((.((((..(((((((((((((..((.....)))))).)))))))))..)))).)))..))))))))..........))))))). 0.845 -47.50 # mouseZ46p83 ..(((((.((.((((((.(((((((.((((..(((((((((((((..((.....)))))).)))))))))..)))).)))))))))))))..........))))))). 0.836 -49.30 # #sblock10519 chromosome:6:134424504:134424580:1 Same_strand|Exonic_non-coding|ENSRNOT00000053696|ENSRNOG00000035573 ## ENSRNOG00000035573|miRNA|rno-mir-409|rno-mir-409 [Source:miRBase;Acc:MI0003550] ## {MIR: rno-mir-409} #human56p83 chromosome:14:100601379:100601486:1 Same_strand|Boundary_non-coding|ENST00000362237|ENSG00000199107|miRNA|hsa-mir-409 [Source:miRBase;Acc:MI0001735] ## {SimpF: oe = 0.96 0 CpG} ## {MIR: hsa-mir-409} #mouseZ46p83 chromosome:12:110981357:110981464:1 Same_strand|Boundary_non-coding|ENSMUST00000083544|ENSMUSG00000065478|miRNA|mmu-mir-409 [Source:miRBase;Acc:MI0001160] ## {MIR: mmu-mir-409} ========== sblock10542 (miRBase rno-mir-153) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10542: 0.001 randfold humanZ5p84_sblock10542: 0.001 randfold mouseZ5p84_sblock10542: 0.002 #forester humanZ5p84_sblock10542: 1 forester mouseZ5p84_sblock10542: 0.97673 #identity: 97.57 sblock10542 GTCATTTTTGTGATGTTGCAGCT #rat_gr634964_libT1S1 23 89 sblock10542 GTCATTTTTGTGATGTTG #rat_gr634959_libT1S1 18 86 sblock10542 GTCATTTTTGTGATGTTG #rat_gr634959_libT1S2 18 86 sblock10542 GTCATTTTTGTGATGTTGCAGCT #rat_gr634964_libT1S2 23 80 sblock10542 GTCATTTTTGTGATGTTGCAGC #rat_gr634963_libT1S2 22 61 sblock10542 GTCATTTTTGTGATGTTGCAGC #rat_gr634963_libT1S1 22 58 sblock10542 GTCATTTTTGTGATGTTGCAG #rat_gr634962_libT1S1 21 56 sblock10542 GTCATTTTTGTGATGTTGCAG #rat_gr634962_libT1S2 21 51 sblock10542 GTCATTTTTGTGATGTTGCA #rat_gr634961_libT1S1 20 50 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT1S1 19 49 sblock10542 GTCATTTTTGTGATGTTGCA #rat_gr634961_libT1S2 20 43 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT1S2 19 40 sblock10542 TCATTTTTGTGATGTTGCAG #rat_gr826324_libT1S1 20 10 sblock10542 TCATTTTTGTGATGTTGCAGC #rat_gr826325_libT1S2 21 4 sblock10542 TCATTTTTGTGATGTTGCAGCT #rat_gr826326_libT1S1 22 4 sblock10542 TCATTTTTGTGATGTTGC #rat_gr826322_libT1S1 18 3 sblock10542 TCATTTTTGTGATGTTGCA #rat_gr826323_libT1S2 19 3 sblock10542 GTCATTTTTGTGATGTTG #rat_gr634959_libT2S2 18 2 sblock10542 TCATTTTTGTGATGTTGC #rat_gr826322_libT1S2 18 2 sblock10542 TCATTTTTGTGATGTTGCAGCTA #rat_gr826327_libT1S2 23 2 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT2S1 19 1 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT4S1 19 1 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT5S1 19 1 sblock10542 GTCATTTTTGTGATGTTGC #rat_gr634960_libT5S2 19 1 sblock10542 GTCATTTTTGTGATGTTGCAG #rat_gr634962_libT3S2 21 1 sblock10542 GTCATTTTTGTGATGTTGCAGCTA #rat_gr634965_libT1S1 24 1 sblock10542 GTCATTTTTGTGATGTTGCAGCTA #rat_gr634965_libT1S2 24 1 sblock10542 TCATTTTTGTGATGTTGCA #rat_gr826323_libT1S1 19 1 sblock10542 TCATTTTTGTGATGTTGCAG #rat_gr826324_libT1S2 20 1 sblock10542 TCATTTTTGTGATGTTGCAGCT #rat_gr826326_libT1S2 22 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT1S1 18 506 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT1S1 20 458 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT1S2 18 436 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT1S2 20 368 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT1S1 19 332 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT1S2 19 291 sblock10542 TTGCATAGTCACAAAAGTGATC #rat_gr1135496_libT1S1 22 112 sblock10542 TTGCATAGTCACAAAAGTGATCA #rat_gr1135497_libT1S1 23 107 sblock10542 TTGCATAGTCACAAAAGTGATCA #rat_gr1135497_libT1S2 23 86 sblock10542 TTGCATAGTCACAAAAGTGAT #rat_gr1135495_libT1S1 21 83 sblock10542 TTGCATAGTCACAAAAGTGATC #rat_gr1135496_libT1S2 22 69 sblock10542 TTGCATAGTCACAAAAGTGAT #rat_gr1135495_libT1S2 21 49 sblock10542 TGCATAGTCACAAAAGTGA #rat_gr962589_libT1S1 19 18 sblock10542 TGCATAGTCACAAAAGTG #rat_gr962588_libT1S1 18 16 sblock10542 TGCATAGTCACAAAAGTGA #rat_gr962589_libT1S2 19 15 sblock10542 TGCATAGTCACAAAAGTGAT #rat_gr962590_libT1S1 20 10 sblock10542 TGCATAGTCACAAAAGTGATCA #rat_gr962592_libT1S1 22 7 sblock10542 TTGCATAGTCACAAAAGTGATCAT #rat_gr1135498_libT1S2 24 6 sblock10542 TGCATAGTCACAAAAGTG #rat_gr962588_libT1S2 18 6 sblock10542 TTGCATAGTCACAAAAGTGATCAT #rat_gr1135498_libT1S1 24 5 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT3S2 20 3 sblock10542 TGCATAGTCACAAAAGTGAT #rat_gr962590_libT1S2 20 3 sblock10542 TGCATAGTCACAAAAGTGATC #rat_gr962591_libT1S1 21 3 sblock10542 TGCATAGTCACAAAAGTGATCAT #rat_gr962593_libT1S1 23 3 sblock10542 TGCATAGTCACAAAAGTGATC #rat_gr962591_libT1S2 21 2 sblock10542 TGCATAGTCACAAAAGTGATCA #rat_gr962592_libT1S2 22 2 sblock10542 TGCATAGTCACAAAAGTGATCAT #rat_gr962593_libT1S2 23 2 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT2S1 18 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT2S2 18 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT4S1 18 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT4S2 18 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT5S1 18 1 sblock10542 TTGCATAGTCACAAAAGT #rat_gr1135492_libT5S2 18 1 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT3S2 19 1 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT4S1 19 1 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT4S2 19 1 sblock10542 TTGCATAGTCACAAAAGTG #rat_gr1135493_libT5S1 19 1 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT3S1 20 1 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT4S1 20 1 sblock10542 TTGCATAGTCACAAAAGTGA #rat_gr1135494_libT5S1 20 1 sblock10542 TTGCATAGTCACAAAAGTGAT #rat_gr1135495_libT2S2 21 1 sblock10542 TTGCATAGTCACAAAAGTGAT #rat_gr1135495_libT4S1 21 1 sblock10542 TTGCATAGTCACAAAAGTGATC #rat_gr1135496_libMirbase_rno-miR-153 22 1 sblock10542 TGCATAGTCACAAAAGTGA #rat_gr962589_libT2S1 19 1 sblock10542 CATAGTCACAAAAGTGATCAT #rat_gr307891_libT1S1 21 1 sblock10542 --------------------AGCGGTGGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTG--------------------- humanZ5p84 -----CCTTGCCAGCTAATTAGCGGTGGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTGACTGTACTGCAGGG------- mouseZ5p84 CCTTACTTTGCCAGCTACTTAGCGGTGGCCGGTGTCATTTTTGTGACGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTGACTGCA--GCAGGGACATGGG ********** *************** ************************************************************ sblock10542 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000006942 ENSRNOG00000005003 Ptprn2 sblock10542 +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000040092 ENSRNOG00000005003 Ptprn2 sblock10542 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053638 ENSRNOG00000035515 rno-mir-153 sblock10542 .(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))). 1.000 -41.30 # humanZ5p84 (((((.(((.((....(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).....)))))))))) 0.999 -50.30 # mouseZ5p84 ((...((((((..((......(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..)))))....)). ))))))....)). 0.999 -51.60 # #sblock10542 chromosome:6:144521037:144521123:1 Same_strand|Intronic_coding|ENSRNOT00000040092|ENSRNOG00000005003 ## Same_strand|Exonic_non-coding|ENSRNOT00000053638|ENSRNOG00000035515 ## ENSRNOG00000005003|protein_coding|Ptprn2|Receptor-type tyrosine-protein phosphatase N2 precursor (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin). [Source:UniProtKB/Swiss-Prot;Acc:Q63475] ## ENSRNOG00000035515|miRNA|rno-mir-153|rno-mir-153 [Source:miRBase;Acc:MI0000922] ## {MIR: rno-mir-153} #humanZ5p84 chromosome:7:157059775:157059890:-1 Same_strand|Intronic_coding|ENST00000389418|ENSG00000155093|protein_coding|Receptor-type tyrosine-protein phosphatase N2 Precursor (R-PTP-N2)(EC 3.1.3.48)(Islet cell autoantigen-related protein)(ICAAR)(IAR)(Phogrin) [Source:UniProtKB/Swiss-Prot;Acc:Q92932] ## Same_strand|Boundary_non-coding|ENST00000403757|ENSG00000155093|protein_coding|Receptor-type tyrosine-protein phosphatase N2 Precursor (R-PTP-N2)(EC 3.1.3.48)(Islet cell autoantigen-related protein)(ICAAR)(IAR)(Phogrin) [Source:UniProtKB/Swiss-Prot;Acc:Q92932] ## {MIR: hsa-mir-153-2} #mouseZ5p84 chromosome:12:118489261:118489386:1 Same_strand|Boundary_non-coding|ENSMUST00000084823|ENSMUSG00000056553|protein_coding|protein tyrosine phosphatase, receptor type, N polypeptide 2 Gene [Source:MGI Symbol;Acc:MGI:107418] ## Same_strand|Intronic_coding|ENSMUST00000070733|ENSMUSG00000056553|protein_coding|protein tyrosine phosphatase, receptor type, N polypeptide 2 Gene [Source:MGI Symbol;Acc:MGI:107418] ## {MIR: mmu-mir-153} ========== sblock10826 (miRBase rno-let-7i) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10826: 0.001 randfold humanZ13p84_sblock10826: 0.001 randfold mouseZ27p84_sblock10826: 0.002 #forester humanZ13p84_sblock10826: 1 forester mouseZ27p84_sblock10826: 1 #identity: 100.00 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT1S1 22 214 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT1S2 22 131 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT3S1 22 106 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT3S2 22 75 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT4S2 22 70 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT5S1 22 56 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT1S2 18 56 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT3S1 18 47 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT1S2 19 45 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT3S1 19 44 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT5S2 22 42 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT3S2 18 41 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT4S1 22 39 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT1S1 18 36 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT1S2 21 26 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT1S1 20 25 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT3S2 19 25 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT4S2 18 25 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT3S1 20 22 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT3S1 21 20 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT4S1 19 19 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT5S2 18 18 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT1S1 21 17 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT4S2 19 17 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT5S1 19 14 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT4S1 18 14 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT1S2 20 13 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT1S1 19 13 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT3S2 20 12 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT4S2 20 12 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT2S2 22 11 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT5S1 21 11 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT5S2 19 11 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT3S2 21 9 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT4S2 21 9 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT5S1 18 9 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT2S1 18 7 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT2S2 20 6 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT5S1 20 6 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT2S1 19 6 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libT2S1 22 5 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT5S2 20 5 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT3S1 23 4 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT4S1 21 4 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT5S2 21 4 sblock10826 CTGCGCAAGCTACTGCCTTG #rat_gr444100_libT4S1 20 4 sblock10826 CTGCGCAAGCTACTGCCT #rat_gr444098_libT2S2 18 4 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT3S2 23 3 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT2S2 21 3 sblock10826 TGCGCAAGCTACTGCCTTG #rat_gr970031_libT4S2 19 3 sblock10826 TGCGCAAGCTACTGCCTT #rat_gr970030_libT2S1 18 3 sblock10826 CTGCGCAAGCTACTGCCTT #rat_gr444099_libT2S2 19 3 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT1S1 23 2 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT4S1 23 2 sblock10826 CTGCGCAAGCTACTGCCTTGC #rat_gr444101_libT2S1 21 2 sblock10826 GCGCAAGCTACTGCCTTG #rat_gr562220_libT4S1 18 2 sblock10826 TGCGCAAGCTACTGCCTTG #rat_gr970031_libT3S1 19 2 sblock10826 TGCGCAAGCTACTGCCTT #rat_gr970030_libT2S2 18 2 sblock10826 CTGCGCAAGCTACTGCCTTGCTAG #rat_gr444104_libT1S1 24 1 sblock10826 CTGCGCAAGCTACTGCCTTGCTAG #rat_gr444104_libT4S1 24 1 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT2S2 23 1 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT4S2 23 1 sblock10826 CTGCGCAAGCTACTGCCTTGCTA #rat_gr444103_libT5S2 23 1 sblock10826 TGCGCAAGCTACTGCCTTGCT #rat_gr970033_libT1S2 21 1 sblock10826 TGCGCAAGCTACTGCCTTGCT #rat_gr970033_libT4S1 21 1 sblock10826 CTGCGCAAGCTACTGCCTTGCT #rat_gr444102_libMirbase_rno-let-7i* 22 1 sblock10826 GCGCAAGCTACTGCCTTGC #rat_gr562221_libT1S1 19 1 sblock10826 TGCGCAAGCTACTGCCTTGC #rat_gr970032_libT4S2 20 1 sblock10826 TGCGCAAGCTACTGCCTT #rat_gr970030_libT3S2 18 1 sblock10826 GTGACATTGCCCGCTGTGGAGA #rat_gr643986_libT4S2 22 2 sblock10826 TGACATTGCCCGCTGTGGA #rat_gr933495_libT1S2 19 2 sblock10826 TGCCCGCTGTGGAGATAAC #rat_gr966379_libT5S1 19 1 sblock10826 GTGACATTGCCCGCTGTGGAGA #rat_gr643986_libT1S2 22 1 sblock10826 TTGTGACATTGCCCGCTGTGGAGA #rat_gr1149679_libT3S1 24 1 sblock10826 GTGACATTGCCCGCTGTGG #rat_gr643985_libT3S2 19 1 sblock10826 GGTCGGGTTGTGACATTGC #rat_gr620021_libT3S1 19 3 sblock10826 GGTCGGGTTGTGACATTGC #rat_gr620021_libT4S2 19 2 sblock10826 GGTCGGGTTGTGACATTGC #rat_gr620021_libT1S1 19 1 sblock10826 GGTCGGGTTGTGACATTGC #rat_gr620021_libT1S2 19 1 sblock10826 GGTCGGGTTGTGACATTGC #rat_gr620021_libT3S2 19 1 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT1S1 18 5140 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT3S1 18 3253 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT1S2 18 2835 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT3S2 18 2795 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT4S2 18 2351 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT5S2 18 1813 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT1S1 19 1730 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT4S1 18 1446 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT5S1 18 1323 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT2S2 18 1301 sblock10826 TGAGGTAGTAGTTTGTGC #rat_gr949834_libT2S1 18 1284 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT3S2 19 1282 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT1S1 20 1262 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT3S1 19 1148 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT1S2 19 962 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT4S2 19 796 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT1S1 21 770 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT5S2 19 708 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT3S2 20 636 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT1S1 22 633 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT1S2 20 630 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT3S1 20 592 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT4S1 19 514 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT5S1 19 433 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT4S2 20 432 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT5S2 20 378 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT1S2 21 316 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT5S2 21 290 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT4S2 21 273 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT3S1 22 272 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT5S2 22 269 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT2S2 19 268 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT5S1 20 260 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT3S1 21 259 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT1S2 22 257 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT3S2 21 256 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT3S2 22 232 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT4S2 22 224 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT4S1 20 215 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT4S1 21 182 sblock10826 TGAGGTAGTAGTTTGTGCT #rat_gr949835_libT2S1 19 170 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT5S1 21 167 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT2S2 20 138 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT4S1 22 129 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT5S1 22 119 sblock10826 TGAGGTAGTAGTTTGTGCTG #rat_gr949836_libT2S1 20 102 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT2S2 22 82 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libT2S1 22 79 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT2S2 21 66 sblock10826 TGAGGTAGTAGTTTGTGCTGT #rat_gr949837_libT2S1 21 56 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT1S1 23 49 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT5S2 23 26 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT3S2 23 23 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT3S1 23 22 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT1S2 23 18 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT4S2 23 18 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT1S1 18 18 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT5S1 23 15 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT1S1 19 14 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT3S1 19 11 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT3S2 19 10 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT1S1 19 10 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT3S2 18 9 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT4S1 23 7 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT1S1 20 7 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT4S1 18 7 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT5S1 19 7 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT1S2 19 6 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT2S2 19 6 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT1S1 21 5 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT1S2 20 5 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT5S2 18 5 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT1S2 19 5 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT2S1 23 4 sblock10826 TGAGGTAGTAGTTTGTGCTGTTG #rat_gr949839_libT2S2 23 4 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT1S2 21 4 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT4S2 19 4 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT5S2 19 4 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGG #rat_gr949840_libT1S1 24 3 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT3S1 21 3 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT5S1 21 3 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT5S2 21 3 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT3S2 20 3 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT4S2 20 3 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT1S2 18 3 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT2S1 18 3 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT3S1 18 3 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT4S2 18 3 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT3S2 19 3 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGGT #rat_gr949841_libT1S1 25 2 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT2S2 21 2 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT4S2 21 2 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT3S1 20 2 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT4S1 20 2 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT5S2 20 2 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT2S1 19 2 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT3S1 19 2 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT4S1 19 2 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT4S2 19 2 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGGTC #rat_gr949842_libT5S2 26 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGGT #rat_gr949841_libT3S1 25 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGGT #rat_gr949841_libT3S2 25 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGG #rat_gr949840_libT2S2 24 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGG #rat_gr949840_libT3S1 24 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGG #rat_gr949840_libT3S2 24 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTTGG #rat_gr949840_libT5S1 24 1 sblock10826 GAGGTAGTAGTTTGTGCTGTTG #rat_gr514571_libT1S2 22 1 sblock10826 GTAGTAGTTTGTGCTGTT #rat_gr630595_libT1S1 18 1 sblock10826 GTAGTAGTTTGTGCTGTT #rat_gr630595_libT4S1 18 1 sblock10826 GGTAGTAGTTTGTGCTGTT #rat_gr618547_libT2S2 19 1 sblock10826 GGTAGTAGTTTGTGCTGTT #rat_gr618547_libT4S1 19 1 sblock10826 GGTAGTAGTTTGTGCTGTT #rat_gr618547_libT4S2 19 1 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT3S2 21 1 sblock10826 GAGGTAGTAGTTTGTGCTGTT #rat_gr514570_libT4S1 21 1 sblock10826 TGAGGTAGTAGTTTGTGCTGTT #rat_gr949838_libMirbase_rno-let-7i 22 1 sblock10826 AGGTAGTAGTTTGTGCTGT #rat_gr190482_libT1S2 19 1 sblock10826 GAGGTAGTAGTTTGTGCTGT #rat_gr514569_libT2S1 20 1 sblock10826 AGGTAGTAGTTTGTGCTG #rat_gr190481_libT5S2 18 1 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT4S1 19 1 sblock10826 GAGGTAGTAGTTTGTGCTG #rat_gr514568_libT5S1 19 1 sblock10826 CTGAGGTAGTAGTTTGTGCTG #rat_gr439552_libT1S2 21 1 sblock10826 GAGGTAGTAGTTTGTGCT #rat_gr514567_libT2S2 18 1 sblock10826 CTGAGGTAGTAGTTTGTGCT #rat_gr439551_libT1S1 20 1 sblock10826 CTGAGGTAGTAGTTTGTGCT #rat_gr439551_libT3S1 20 1 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT2S1 19 1 sblock10826 CTGAGGTAGTAGTTTGTGC #rat_gr439550_libT5S2 19 1 sblock10826 CTGAGGTAGTAGTTTGTG #rat_gr439549_libT1S1 18 1 sblock10826 CTGAGGTAGTAGTTTGTG #rat_gr439549_libT1S2 18 1 sblock10826 CTGAGGTAGTAGTTTGTG #rat_gr439549_libT3S1 18 1 sblock10826 CTGAGGTAGTAGTTTGTG #rat_gr439549_libT3S2 18 1 sblock10826 CTGAGGTAGTAGTTTGTG #rat_gr439549_libT5S1 18 1 sblock10826 GCTGAGGTAGTAGTTTGTG #rat_gr571754_libT1S2 19 1 sblock10826 -----------------CTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAG----------------- humanZ13p84 ----------------------TGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTG--------------------- mouseZ27p84 GCTCCCACACCATGGCCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAGTGCTGGTGATGCTCAGC **************************************************************************** sblock10826 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053765 ENSRNOG00000035642 rno-let-7i sblock10826 (((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))) 1.000 -42.10 # humanZ13p84 .(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))). 0.811 -36.30 # mouseZ27p84 (((..((((((..(((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).))))))).))...))) 0.810 -54.40 # #sblock10826 chromosome:7:62755360:62755444:-1 Same_strand|Boundary_non-coding|ENSRNOT00000053765|ENSRNOG00000035642 ## Same_strand|Exonic_non-coding|ENSRNOT00000053765|ENSRNOG00000035642 ## ENSRNOG00000035642|miRNA|rno-let-7i|rno-let-7i [Source:miRBase;Acc:MI0000835] ## {SimpF: oe = 0.90 0 CpG} ## {MIR: rno-let-7i} #humanZ13p84 chromosome:12:61283713:61283837:1 Same_strand|Boundary_non-coding|ENST00000362309|ENSG00000199179|miRNA|hsa-let-7i [Source:miRBase;Acc:MI0000434] ## {SimpF: oe = 0.88 0 CpG,rank = 2 1 FirstEF} ## {MIR: hsa-let-7i} #mouseZ27p84 chromosome:10:122422679:122422797:-1 Same_strand|Boundary_non-coding|ENSMUST00000083472|ENSMUSG00000065406|miRNA|mmu-let-7i [Source:miRBase;Acc:MI0000138] ## {SimpF: oe = 0.96 1 CpG} ## {MIR: mmu-let-7i} ========== sblock11867 (miRBase rno-mir-184) [miRNAknown_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock11867: 0.001 randfold humanZ13p85_sblock11867: 0.004 randfold mouseZ13p85_sblock11867: 0.001 #forester humanZ13p85_sblock11867: 0.897908 forester mouseZ13p85_sblock11867: 0.885634 #identity: 93.60 sblock11867 TGGACGGAGAACTGATAAG #rat_gr994360_libT3S2 19 3 sblock11867 TGGACGGAGAACTGATAAG #rat_gr994360_libT4S2 19 3 sblock11867 TGGACGGAGAACTGATAAGG #rat_gr994361_libT3S1 20 2 sblock11867 TGGACGGAGAACTGATAA #rat_gr994359_libT1S1 18 2 sblock11867 TGGACGGAGAACTGATAA #rat_gr994359_libT3S1 18 2 sblock11867 TGGACGGAGAACTGATAA #rat_gr994359_libT4S1 18 2 sblock11867 TGGACGGAGAACTGATAAGGGT #rat_gr994363_libMirbase_rno-miR-184 22 1 sblock11867 TGGACGGAGAACTGATAAGGGT #rat_gr994363_libT2S2 22 1 sblock11867 TGGACGGAGAACTGATAAGGGT #rat_gr994363_libT3S1 22 1 sblock11867 TGGACGGAGAACTGATAAGGGT #rat_gr994363_libT3S2 22 1 sblock11867 TGGACGGAGAACTGATAAGGG #rat_gr994362_libT1S1 21 1 sblock11867 GGACGGAGAACTGATAAGG #rat_gr585908_libT3S2 19 1 sblock11867 GGACGGAGAACTGATAAGG #rat_gr585908_libT4S2 19 1 sblock11867 TGGACGGAGAACTGATAAGG #rat_gr994361_libT5S1 20 1 sblock11867 TGGACGGAGAACTGATAAG #rat_gr994360_libT1S1 19 1 sblock11867 TGGACGGAGAACTGATAAG #rat_gr994360_libT1S2 19 1 sblock11867 TGGACGGAGAACTGATAAG #rat_gr994360_libT3S1 19 1 sblock11867 TTGGACGGAGAACTGATA #rat_gr1141709_libT4S2 18 1 sblock11867 TCCCTTATCAGTTTTCCA #rat_gr863247_libT2S2 18 1 sblock11867 ---------CACTTTCCCTTATCAGTTTTCCAG-CCAGCTTTGTGACTGTAAATGTTGGACGGAGAACTGATAAGGGTAAGTGACTG----------------- humanZ13p85 CCGGCCAGTCACGTCCCCTTATCACTTTTCCAGCCCAGCTTTGTGACTGTAAGTGTTGGACGGAGAACTGATAAGGGTAGGTGATTGACACTCACAGCCTCCGG mouseZ13p85 --------------TTCCTTATCACTTTTCCAG-CCAGCTTTGTGACTCTAAGTGTTGGACGGAGAACTGATAAGGGT-------------------------- ******** ******** ************** *** ************************* sblock11867 ----- ------------------------ ----------------------------------------------------- ----- #ENSRNOT00000036149 ENSRNOG00000014025 RGRF1_RAT sblock11867 ..... >>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053645 ENSRNOG00000035522 rno-mir-184 sblock11867 (((((.((((((((((((((((.. (((((((((......)))).)))))..)))))))))))))))).))))).... 1.000 -40.70 # humanZ13p85 ..((((((((((...(((((((((.((((((...(((((((((......)))).)))))..)))))).)))))))))...))))))).........)))..... 0.802 -37.50 # mouseZ13p85 .(((((((((.((((((.. (((((((((......)))).)))))..)))))).))))))))). 1.000 -25.50 # #sblock11867 chromosome:8:94692573:94692649:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000018794|ENSRNOG00000014025 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000036149|ENSRNOG00000014025 ## Same_strand|Exonic_non-coding|ENSRNOT00000053645|ENSRNOG00000035522 ## ENSRNOG00000035522|miRNA|rno-mir-184|rno-mir-184 [Source:miRBase;Acc:MI0000929] ## ENSRNOG00000014025|protein_coding|RGRF1_RAT|Ras-specific guanine nucleotide-releasing factor 1 (Ras-GRF1) (Guanine nucleotide-releasing protein) (GNRP) (P140 Ras-GRF). [Source:UniProtKB/Swiss-Prot;Acc:P28818] ## {MIR: rno-mir-184} #humanZ13p85 chromosome:15:77289181:77289284:1 Same_strand|Boundary_non-coding|ENST00000384962|ENSG00000207695|miRNA|hsa-mir-184 [Source:miRBase;Acc:MI0000481] ## {MIR: hsa-mir-184} #mouseZ13p85 chromosome:9:89697072:89697188:-1 Same_strand|Boundary_non-coding|ENSMUST00000083662|ENSMUSG00000065596|miRNA|mmu-mir-184 [Source:miRBase;Acc:MI0000226] ## {MIR: mmu-mir-184} ========== sblock12151 (miRBase rno-mir-138-1) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12151: 0.001 randfold humanZ24p85_sblock12151: 0.001 randfold mouseZ31p85_sblock12151: 0.001 #forester humanZ24p85_sblock12151: 1 forester mouseZ31p85_sblock12151: 1 #identity: 95.02 sblock12151 TGGCATGGTGTTGTGGGAC #rat_gr1009517_libT1S2 19 8 sblock12151 CTGGCATGGTGTTGTGGGAC #rat_gr448357_libT1S2 20 3 sblock12151 TGGCATGGTGTTGTGGGA #rat_gr1009516_libT3S1 18 3 sblock12151 TGGCATGGTGTTGTGGGA #rat_gr1009516_libT3S2 18 2 sblock12151 CTGGCATGGTGTTGTGGG #rat_gr448356_libT1S2 18 1 sblock12151 CTGGCATGGTGTTGTGGG #rat_gr448356_libT3S2 18 1 sblock12151 CTGGCATGGTGTTGTGGGAC #rat_gr448357_libT1S1 20 1 sblock12151 CTGGCATGGTGTTGTGGGAC #rat_gr448357_libT3S2 20 1 sblock12151 TGGCATGGTGTTGTGGGA #rat_gr1009516_libT1S2 18 1 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT1S1 19 63971 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT1S2 19 46472 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT1S1 18 26797 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT1S2 18 20352 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT1S1 23 12395 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT1S1 22 12349 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT1S2 20 10755 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT1S2 22 9843 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT1S1 24 9220 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT1S2 23 6862 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT1S1 20 6568 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT1S2 24 5385 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT3S1 19 3981 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT1S1 21 3569 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT1S2 21 2334 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT3S1 18 1540 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT3S2 19 1415 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT3S1 22 754 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT3S1 24 724 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT3S2 18 694 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT3S1 23 589 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT5S2 19 510 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT5S1 19 488 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT3S1 20 342 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT3S2 22 272 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT5S2 18 258 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT3S2 24 250 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT5S1 18 211 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT3S2 23 188 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT1S2 25 180 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT3S1 21 177 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT4S1 19 175 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT4S2 19 169 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT2S1 19 162 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT3S2 20 146 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT5S1 24 146 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT5S1 22 119 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT5S2 24 113 sblock12151 AGCTGGTGTTGTGAATCAG #rat_gr166869_libT2S2 19 111 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT5S1 23 107 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT5S2 22 88 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT1S2 26 82 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT4S2 18 70 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT2S1 18 69 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT3S2 21 67 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT5S2 23 66 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT5S2 20 58 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT1S1 26 55 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT4S1 18 54 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT1S1 25 50 sblock12151 AGCTGGTGTTGTGAATCA #rat_gr166868_libT2S2 18 49 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT5S1 20 47 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT2S1 23 43 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT4S2 23 38 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT2S2 22 34 sblock12151 GCTGGTGTTGTGAATCAG #rat_gr574757_libT1S1 18 33 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT2S1 22 32 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT4S2 22 31 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT5S2 21 29 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT4S1 24 29 sblock12151 AGCTGGTGTTGTGAATCAGGCC #rat_gr166872_libT4S1 22 27 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT2S2 23 27 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT2S2 24 26 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT2S1 24 25 sblock12151 AGCTGGTGTTGTGAATCAGGCCGT #rat_gr166876_libT4S2 24 25 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT4S1 20 23 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT5S1 21 23 sblock12151 CAGCTGGTGTTGTGAATCAG #rat_gr295893_libT1S1 20 21 sblock12151 GCTGGTGTTGTGAATCAGG #rat_gr574758_libT1S1 19 21 sblock12151 CAGCTGGTGTTGTGAATCAG #rat_gr295893_libT1S2 20 20 sblock12151 GCTGGTGTTGTGAATCAGG #rat_gr574758_libT1S2 19 20 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libT4S1 23 18 sblock12151 CAGCTGGTGTTGTGAATCA #rat_gr295892_libT1S1 19 15 sblock12151 CAGCTGGTGTTGTGAATCA #rat_gr295892_libT1S2 19 14 sblock12151 GCTGGTGTTGTGAATCAG #rat_gr574757_libT1S2 18 13 sblock12151 GCTGGTGTTGTGAATCAGGCC #rat_gr574760_libT1S1 21 11 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT4S2 21 10 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT2S2 20 9 sblock12151 CTGGTGTTGTGAATCAGGC #rat_gr452509_libT1S2 19 9 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT2S2 21 8 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT3S1 25 8 sblock12151 GCTGGTGTTGTGAATCAGGCC #rat_gr574760_libT1S2 21 8 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT4S2 20 7 sblock12151 AGCTGGTGTTGTGAATCAGG #rat_gr166870_libT2S1 20 6 sblock12151 CAGCTGGTGTTGTGAATC #rat_gr295891_libT1S1 18 5 sblock12151 GCTGGTGTTGTGAATCAGGCCG #rat_gr574761_libT1S1 22 5 sblock12151 GCTGGTGTTGTGAATCAGGCCGT #rat_gr574764_libT1S1 23 5 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT4S1 21 4 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT5S2 25 4 sblock12151 GCTGGTGTTGTGAATCAGGC #rat_gr574759_libT1S1 20 4 sblock12151 GCTGGTGTTGTGAATCAGGCCG #rat_gr574761_libT1S2 22 4 sblock12151 GCTGGTGTTGTGAATCAGGCCGTT #rat_gr574765_libT1S2 24 4 sblock12151 TGGTGTTGTGAATCAGGCC #rat_gr1067795_libT1S2 19 4 sblock12151 GGTGTTGTGAATCAGGCCG #rat_gr623284_libT1S1 19 4 sblock12151 GGTGTTGTGAATCAGGCCGT #rat_gr623287_libT1S1 20 4 sblock12151 CAGCTGGTGTTGTGAATCAGG #rat_gr295894_libT1S2 21 3 sblock12151 CAGCTGGTGTTGTGAATCAGGCCGT #rat_gr295897_libT1S1 25 3 sblock12151 AGCTGGTGTTGTGAATCAGGC #rat_gr166871_libT2S1 21 3 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT2S2 25 3 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT3S1 26 3 sblock12151 GCTGGTGTTGTGAATCAGGCCGT #rat_gr574764_libT1S2 23 3 sblock12151 CTGGTGTTGTGAATCAGGC #rat_gr452509_libT1S1 19 3 sblock12151 CAGCTGGTGTTGTGAATC #rat_gr295891_libT1S2 18 2 sblock12151 CAGCTGGTGTTGTGAATCAG #rat_gr295893_libT3S2 20 2 sblock12151 CAGCTGGTGTTGTGAATCAGGCC #rat_gr295895_libT1S2 23 2 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT3S2 25 2 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT5S1 26 2 sblock12151 GCTGGTGTTGTGAATCAGG #rat_gr574758_libT3S1 19 2 sblock12151 GCTGGTGTTGTGAATCAGGCCGTT #rat_gr574765_libT1S1 24 2 sblock12151 TGGTGTTGTGAATCAGGCC #rat_gr1067795_libT1S1 19 2 sblock12151 GGTGTTGTGAATCAGGCCG #rat_gr623284_libT1S2 19 2 sblock12151 CAGCTGGTGTTGTGAATC #rat_gr295891_libT3S1 18 1 sblock12151 CAGCTGGTGTTGTGAATCA #rat_gr295892_libT3S1 19 1 sblock12151 CAGCTGGTGTTGTGAATCAGGCC #rat_gr295895_libT1S1 23 1 sblock12151 CAGCTGGTGTTGTGAATCAGGCCG #rat_gr295896_libT1S2 24 1 sblock12151 CAGCTGGTGTTGTGAATCAGGCCGT #rat_gr295897_libT1S2 25 1 sblock12151 CAGCTGGTGTTGTGAATCAGGCCGT #rat_gr295897_libT4S2 25 1 sblock12151 AGCTGGTGTTGTGAATCAGGCCG #rat_gr166873_libMirbase_rno-miR-138 23 1 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT4S1 25 1 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTT #rat_gr166877_libT4S2 25 1 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT3S2 26 1 sblock12151 AGCTGGTGTTGTGAATCAGGCCGTTG #rat_gr166878_libT5S2 26 1 sblock12151 GCTGGTGTTGTGAATCAG #rat_gr574757_libT3S1 18 1 sblock12151 GCTGGTGTTGTGAATCAGG #rat_gr574758_libT3S2 19 1 sblock12151 GCTGGTGTTGTGAATCAGG #rat_gr574758_libT4S1 19 1 sblock12151 GCTGGTGTTGTGAATCAGGC #rat_gr574759_libT1S2 20 1 sblock12151 GCTGGTGTTGTGAATCAGGCCGT #rat_gr574764_libT3S2 23 1 sblock12151 GCTGGTGTTGTGAATCAGGCCGT #rat_gr574764_libT4S1 23 1 sblock12151 GCTGGTGTTGTGAATCAGGCCGTT #rat_gr574765_libT3S1 24 1 sblock12151 CTGGTGTTGTGAATCAGGC #rat_gr452509_libT3S2 19 1 sblock12151 CTGGTGTTGTGAATCAGGCC #rat_gr452510_libT1S2 20 1 sblock12151 CTGGTGTTGTGAATCAGGCCG #rat_gr452511_libT1S1 21 1 sblock12151 CTGGTGTTGTGAATCAGGCCGT #rat_gr452513_libT1S1 22 1 sblock12151 CTGGTGTTGTGAATCAGGCCGT #rat_gr452513_libT1S2 22 1 sblock12151 TGGTGTTGTGAATCAGGC #rat_gr1067794_libT1S1 18 1 sblock12151 TGGTGTTGTGAATCAGGCC #rat_gr1067795_libT3S2 19 1 sblock12151 TGGTGTTGTGAATCAGGCCG #rat_gr1067796_libT1S1 20 1 sblock12151 TGGTGTTGTGAATCAGGCCG #rat_gr1067796_libT1S2 20 1 sblock12151 TGGTGTTGTGAATCAGGCCGTT #rat_gr1067797_libT1S2 22 1 sblock12151 GGTGTTGTGAATCAGGCC #rat_gr623283_libT1S1 18 1 sblock12151 GGTGTTGTGAATCAGGCC #rat_gr623283_libT1S2 18 1 sblock12151 GGTGTTGTGAATCAGGCCGT #rat_gr623287_libT1S2 20 1 sblock12151 GGTGTTGTGAATCAGGCCGTT #rat_gr623288_libT1S1 21 1 sblock12151 GGTGTTGTGAATCAGGCCGTT #rat_gr623288_libT1S2 21 1 sblock12151 GGTGTTGTGAATCAGGCCGTT #rat_gr623288_libT3S1 21 1 sblock12151 GTGTTGTGAATCAGGCCG #rat_gr655781_libT1S1 18 1 sblock12151 GTTGTGAATCAGGCCGTTGCCAA #rat_gr662475_libT1S1 23 1 sblock12151 TTGCCAATCAGAGAACGGC #rat_gr1135882_libT1S2 19 1 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT1S1 19 433 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT1S1 22 383 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT1S1 20 336 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT1S2 20 265 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT1S2 22 262 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT1S2 19 241 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT1S1 18 240 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT1S1 21 208 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT1S2 21 196 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT1S2 18 192 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT3S1 19 23 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT3S1 21 22 sblock12151 CGGCTACTTCACAACACCAGG #rat_gr399172_libT1S1 21 21 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT3S1 22 20 sblock12151 CGGCTACTTCACAACACCAGGG #rat_gr399173_libT1S1 22 18 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT3S1 20 18 sblock12151 CGGCTACTTCACAACACCAG #rat_gr399171_libT1S1 20 16 sblock12151 CGGCTACTTCACAACACCAG #rat_gr399171_libT1S2 20 14 sblock12151 CGGCTACTTCACAACACCAGGGTC #rat_gr399175_libT1S1 24 13 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT3S1 18 12 sblock12151 CGGCTACTTCACAACACCAGG #rat_gr399172_libT1S2 21 11 sblock12151 CGGCTACTTCACAACACCAGGG #rat_gr399173_libT1S2 22 11 sblock12151 CGGCTACTTCACAACACCA #rat_gr399170_libT1S2 19 9 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT3S2 19 9 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT3S2 22 9 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT1S1 18 8 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT1S2 18 8 sblock12151 CGGCTACTTCACAACACCA #rat_gr399170_libT1S1 19 8 sblock12151 CGGCTACTTCACAACACCAGGGTC #rat_gr399175_libT1S2 24 8 sblock12151 CGGCTACTTCACAACACCAGGGT #rat_gr399174_libT1S1 23 7 sblock12151 CTACTTCACAACACCAGGGTC #rat_gr411557_libT1S1 21 7 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT5S1 20 6 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT4S2 22 6 sblock12151 CTACTTCACAACACCAGGGT #rat_gr411556_libT1S2 20 6 sblock12151 CTACTTCACAACACCAGGGT #rat_gr411556_libT1S1 20 5 sblock12151 GGCTACTTCACAACACCAGGGTC #rat_gr598560_libT1S1 23 4 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT2S1 21 4 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT3S2 21 4 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT5S2 21 4 sblock12151 CTACTTCACAACACCAGGGTC #rat_gr411557_libT1S2 21 4 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT4S1 18 3 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT4S2 19 3 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT4S2 20 3 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT4S1 22 3 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT5S1 22 3 sblock12151 CTACTTCACAACACCAGGG #rat_gr411555_libT1S1 19 3 sblock12151 CTACTTCACAACACCAGGG #rat_gr411555_libT1S2 19 3 sblock12151 CGGCTACTTCACAACACCA #rat_gr399170_libT3S1 19 2 sblock12151 CGGCTACTTCACAACACCAGG #rat_gr399172_libT3S1 21 2 sblock12151 CGGCTACTTCACAACACCAGGGT #rat_gr399174_libT1S2 23 2 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT3S2 18 2 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT4S2 18 2 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT5S2 18 2 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT2S1 19 2 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT5S1 19 2 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT3S2 20 2 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT5S2 22 2 sblock12151 CTACTTCACAACACCAGG #rat_gr411554_libT1S2 18 2 sblock12151 TACTTCACAACACCAGGGT #rat_gr756285_libT3S1 19 2 sblock12151 TACTTCACAACACCAGGGTC #rat_gr756286_libT1S1 20 2 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT3S1 18 1 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT4S2 18 1 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT5S1 18 1 sblock12151 CGGCTACTTCACAACACC #rat_gr399169_libT5S2 18 1 sblock12151 CGGCTACTTCACAACACCAG #rat_gr399171_libT3S1 20 1 sblock12151 CGGCTACTTCACAACACCAGG #rat_gr399172_libT4S2 21 1 sblock12151 CGGCTACTTCACAACACCAGGG #rat_gr399173_libMirbase_rno-miR-138* 22 1 sblock12151 CGGCTACTTCACAACACCAGGG #rat_gr399173_libT2S2 22 1 sblock12151 CGGCTACTTCACAACACCAGGG #rat_gr399173_libT3S1 22 1 sblock12151 CGGCTACTTCACAACACCAGGGT #rat_gr399174_libT3S1 23 1 sblock12151 CGGCTACTTCACAACACCAGGGT #rat_gr399174_libT5S2 23 1 sblock12151 CGGCTACTTCACAACACCAGGGTCT #rat_gr399176_libT1S1 25 1 sblock12151 GGCTACTTCACAACACCA #rat_gr598558_libT1S2 18 1 sblock12151 GGCTACTTCACAACACCAG #rat_gr598559_libT1S1 19 1 sblock12151 GGCTACTTCACAACACCAGGGTC #rat_gr598560_libT3S1 23 1 sblock12151 GCTACTTCACAACACCAG #rat_gr567033_libT2S2 18 1 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT2S2 19 1 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT4S1 19 1 sblock12151 GCTACTTCACAACACCAGG #rat_gr567034_libT5S2 19 1 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT4S1 20 1 sblock12151 GCTACTTCACAACACCAGGG #rat_gr567035_libT5S2 20 1 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT2S2 21 1 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT4S1 21 1 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT4S2 21 1 sblock12151 GCTACTTCACAACACCAGGGT #rat_gr567036_libT5S1 21 1 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT2S1 22 1 sblock12151 GCTACTTCACAACACCAGGGTC #rat_gr567037_libT2S2 22 1 sblock12151 GCTACTTCACAACACCAGGGTCTC #rat_gr567038_libT1S2 24 1 sblock12151 CTACTTCACAACACCAGG #rat_gr411554_libT1S1 18 1 sblock12151 CTACTTCACAACACCAGGGT #rat_gr411556_libT3S1 20 1 sblock12151 CTACTTCACAACACCAGGGT #rat_gr411556_libT5S2 20 1 sblock12151 CTACTTCACAACACCAGGGTC #rat_gr411557_libT5S1 21 1 sblock12151 CTACTTCACAACACCAGGGTCT #rat_gr411558_libT1S1 22 1 sblock12151 TACTTCACAACACCAGGG #rat_gr756284_libT1S1 18 1 sblock12151 CTCTGGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGTCTCACTGCACTGCAGG- humanZ24p85 --------TGGTGTGGTGGGGCAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACCACACTACAGGC mouseZ31p85 ---------GGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACT------ ***** ***** ************************************************************* * *** **** sblock12151 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053764 ENSRNOG00000035641 rno-mir-138-1 sblock12151 ..(((.((..((((.(((((((..(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).))))))).))))))))). 1.000 -51.30 # humanZ24p85 ((((((((((.(((..(((((((((((((...(((((((...........)))))))..))))))))))))).))).))))))))))..... 1.000 -54.10 # mouseZ31p85 (((((.(((((....(((((((((((((...(((((((...........)))))))..)))))))))))))..)).))).))))) 1.000 -41.80 # #sblock12151 chromosome:8:127390278:127390376:1 Same_strand|Exonic_non-coding|ENSRNOT00000053764|ENSRNOG00000035641 ## Same_strand|Boundary_non-coding|ENSRNOT00000053764|ENSRNOG00000035641 ## ENSRNOG00000035641|miRNA|rno-mir-138-1|rno-mir-138-1 [Source:miRBase;Acc:MI0000912] ## {MIR: rno-mir-138-1} #humanZ24p85 chromosome:3:44130716:44130807:1 Same_strand|Exonic_non-coding|ENST00000385219|ENSG00000207954|miRNA|hsa-mir-138-1 [Source:miRBase;Acc:MI0000476] ## {MIR: hsa-mir-138-1} #mouseZ31p85 chromosome:9:122592003:122592087:1 Same_strand|Exonic_non-coding|ENSMUST00000083480|ENSMUSG00000065414|miRNA|mmu-mir-138-1 [Source:miRBase;Acc:MI0000722] ## {MIR: mmu-mir-138-1} ========== sblock12393 (miRBase rno-mir-133b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12393: 0.001 randfold humanZ28p85_sblock12393: 0.005 randfold mouseZ34p85_sblock12393: 0.001 #forester humanZ28p85_sblock12393: 1 forester mouseZ34p85_sblock12393: 1 #identity: 100.00 sblock12393 GCTGGTCAAACGGAACCAAGTC #rat_gr574605_libT1S1 22 1 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT4S2 18 32341 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT4S1 18 18324 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT4S2 19 14097 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT4S1 19 12398 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT4S2 19 8811 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT4S1 19 7069 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT4S2 18 6518 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT4S1 18 6016 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT4S2 20 5806 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT4S1 20 4805 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT4S2 20 2063 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT4S2 18 2021 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT4S2 21 1578 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT4S2 21 1472 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT4S1 21 1393 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT4S1 18 1311 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT4S1 20 1249 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT4S1 21 1245 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT4S1 22 545 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT4S2 22 470 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT4S2 23 277 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT4S2 19 260 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT4S2 22 253 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT1S1 18 236 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT2S1 18 233 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT4S1 23 211 sblock12393 TGGTCCCCTTCAACCAGCTA #rat_gr1064181_libT4S2 20 196 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT4S1 19 184 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT2S2 18 180 sblock12393 TGGTCCCCTTCAACCAGCTA #rat_gr1064181_libT4S1 20 170 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT4S1 22 162 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT1S1 19 158 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT1S2 18 150 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT3S2 18 125 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT2S2 19 114 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT1S1 19 108 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT2S1 19 106 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT5S2 18 88 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT1S1 18 87 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT1S2 19 82 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT1S2 19 81 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT3S2 19 78 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT5S1 18 77 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT1S1 20 71 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT2S1 18 69 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT5S2 19 68 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT2S2 19 62 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT1S2 18 50 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT2S1 19 49 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT2S2 20 43 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT2S2 18 39 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT1S1 21 36 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT3S2 19 33 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT2S1 20 33 sblock12393 TTGGTCCCCTTCAACCAG #rat_gr1146163_libT3S1 18 33 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT1S2 21 32 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT5S2 19 31 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT1S2 20 30 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT3S1 19 30 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT5S2 18 29 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT1S1 20 26 sblock12393 TTGGTCCCCTTCAACCAGC #rat_gr1146164_libT5S1 19 25 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT3S2 18 24 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT2S1 18 22 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT5S1 19 21 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT3S2 20 20 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT3S1 18 19 sblock12393 TTTGGTCCCCTTCAACCA #rat_gr1172039_libT5S1 18 19 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT5S2 20 17 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT2S1 20 17 sblock12393 TGGTCCCCTTCAACCAGCTAC #rat_gr1064182_libT4S2 21 16 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT3S2 20 15 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT1S1 18 15 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT1S2 18 15 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT5S1 20 14 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT2S2 21 14 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT2S1 21 13 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT1S2 20 13 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT2S2 20 13 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT1S1 21 13 sblock12393 TGGTCCCCTTCAACCAGCTAC #rat_gr1064182_libT4S1 21 13 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT2S2 21 12 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT1S1 23 11 sblock12393 TTTGGTCCCCTTCAACCAG #rat_gr1172040_libT3S1 19 10 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT2S1 21 10 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT2S2 18 10 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT3S2 18 10 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT5S2 21 9 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT1S2 21 8 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT5S1 18 8 sblock12393 GGTCCCCTTCAACCAGCT #rat_gr619670_libT4S2 18 8 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT5S2 21 7 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT5S1 20 7 sblock12393 TTGGTCCCCTTCAACCAGCTACA #rat_gr1146168_libT4S1 23 7 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT5S2 18 7 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT1S1 22 6 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT3S2 21 5 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT2S2 22 5 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT5S2 20 5 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT3S1 22 4 sblock12393 TTGGTCCCCTTCAACCAGCT #rat_gr1146165_libT3S1 20 4 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT5S2 19 4 sblock12393 TTTGGTCCCCTTCAACCAGC #rat_gr1172041_libT3S1 20 3 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT3S1 21 3 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT1S1 22 3 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT5S2 22 3 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT1S2 23 3 sblock12393 TTTGGTCCCCTTCAACCAGCTACA #rat_gr1172045_libT4S1 24 3 sblock12393 TTTGGTCCCCTTCAACCAGCTACA #rat_gr1172045_libT4S2 24 3 sblock12393 TTGGTCCCCTTCAACCAGCTACA #rat_gr1146168_libT4S2 23 3 sblock12393 TGGTCCCCTTCAACCAGC #rat_gr1064179_libT3S1 18 3 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT2S1 19 3 sblock12393 GGTCCCCTTCAACCAGCT #rat_gr619670_libT4S1 18 3 sblock12393 TTTGGTCCCCTTCAACCAGCT #rat_gr1172042_libT5S1 21 2 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT1S2 22 2 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT5S1 22 2 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT2S1 23 2 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT2S2 23 2 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT3S2 23 2 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT5S2 23 2 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT3S1 21 2 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT3S2 21 2 sblock12393 TTGGTCCCCTTCAACCAGCTA #rat_gr1146166_libT5S1 21 2 sblock12393 TGGTCCCCTTCAACCAGCTACA #rat_gr1064183_libT4S2 22 2 sblock12393 GGTCCCCTTCAACCAGCTA #rat_gr619671_libT4S1 19 2 sblock12393 GGTCCCCTTCAACCAGCTA #rat_gr619671_libT4S2 19 2 sblock12393 GGTTTGGTCCCCTTCAACC #rat_gr626165_libT4S2 19 1 sblock12393 GTTTGGTCCCCTTCAACCAG #rat_gr664551_libT4S2 20 1 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libMirbase_rno-miR-133b 22 1 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT2S1 22 1 sblock12393 TTTGGTCCCCTTCAACCAGCTA #rat_gr1172043_libT3S2 22 1 sblock12393 TTTGGTCCCCTTCAACCAGCTAC #rat_gr1172044_libT3S1 23 1 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT2S1 22 1 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT2S2 22 1 sblock12393 TTGGTCCCCTTCAACCAGCTAC #rat_gr1146167_libT5S2 22 1 sblock12393 TTGGTCCCCTTCAACCAGCTACAG #rat_gr1146169_libT4S1 24 1 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT1S1 19 1 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT1S2 19 1 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT2S2 19 1 sblock12393 TGGTCCCCTTCAACCAGCT #rat_gr1064180_libT3S2 19 1 sblock12393 TGGTCCCCTTCAACCAGCTA #rat_gr1064181_libT2S1 20 1 sblock12393 TGGTCCCCTTCAACCAGCTA #rat_gr1064181_libT3S2 20 1 sblock12393 TGGTCCCCTTCAACCAGCTA #rat_gr1064181_libT5S2 20 1 sblock12393 TGGTCCCCTTCAACCAGCTACA #rat_gr1064183_libT4S1 22 1 sblock12393 GGTCCCCTTCAACCAGCTAC #rat_gr619672_libT4S2 20 1 sblock12393 GTCCCCTTCAACCAGCTA #rat_gr637154_libT4S2 18 1 sblock12393 -----------------CCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAA---------------- humanZ28p85 ---------------------------GCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGC--------------------------------- mouseZ34p85 CTCCAAAGGGAGTGGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAAAGCTCAATATTTGGAG ********************************************************* sblock12393 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053694 ENSRNOG00000035571 rno-mir-133b sblock12393 (((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))....... 1.000 -40.30 # humanZ28p85 ((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))) 1.000 -22.20 # mouseZ34p85 (((((((..((((.((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..)))...))))....))))))) 1.000 -59.80 # #sblock12393 chromosome:9:19405870:19405953:1 Same_strand|Exonic_non-coding|ENSRNOT00000053694|ENSRNOG00000035571 ## ENSRNOG00000035571|miRNA|rno-mir-133b|rno-mir-133b [Source:miRBase;Acc:MI0003490] ## {MIR: rno-mir-133b} #humanZ28p85 chromosome:6:52121678:52121801:1 Same_strand|Boundary_non-coding|ENST00000362210|ENSG00000199080|miRNA|hsa-mir-133b [Source:miRBase;Acc:MI0000822] ## {MIR: hsa-mir-133b} #mouseZ34p85 chromosome:1:20672851:20672967:1 Same_strand|Exonic_non-coding|ENSMUST00000083546|ENSMUSG00000065480|miRNA|mmu-mir-133b [Source:miRBase;Acc:MI0000821] ## {MIR: mmu-mir-133b} ========== sblock12697 (miRBase rno-mir-361) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12697: 0.001 randfold humanZ8p86_sblock12697: 0.001 randfold mouseZ38p86_sblock12697: 0.001 #forester humanZ8p86_sblock12697: 0.865105 forester mouseZ38p86_sblock12697: 0.937848 #identity: 91.59 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT1S1 19 1226 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT1S2 19 804 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT1S1 20 463 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT1S1 20 373 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT1S2 20 322 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT3S1 19 305 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT4S2 19 270 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT2S1 19 269 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT1S2 20 255 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT4S1 19 232 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT1S1 18 211 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT4S2 20 187 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT5S1 19 186 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT1S2 18 159 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT3S2 19 154 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT5S2 19 153 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT3S1 20 146 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT3S2 20 145 sblock12697 CCCCCAGGTGTGATTCTGA #rat_gr349254_libT2S2 19 126 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT2S2 20 112 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT4S1 20 112 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT1S1 23 108 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT3S1 18 105 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT2S1 20 103 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT4S2 20 102 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT5S1 20 101 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT1S1 23 94 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT1S2 19 89 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT1S2 21 84 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT3S1 20 82 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT4S1 20 82 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT1S1 21 82 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT3S1 18 82 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT1S1 19 80 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT1S1 18 78 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT1S2 18 78 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT1S2 23 77 sblock12697 TCCCCCAGGTGTGATTCTGA #rat_gr847981_libT5S2 20 76 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT5S2 20 75 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT2S1 20 74 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT4S2 23 72 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT3S2 23 65 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT3S2 18 65 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT3S1 19 64 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT3S1 23 60 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT5S1 18 59 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT4S1 18 57 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT2S1 18 54 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT3S2 19 54 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT4S2 18 53 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT3S2 18 52 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT1S1 22 50 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT5S1 20 50 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT2S2 18 48 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT4S2 18 46 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT2S2 19 46 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT1S2 23 43 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT2S1 19 42 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT2S2 18 42 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT4S1 18 40 sblock12697 CCCCCAGGTGTGATTCTG #rat_gr349253_libT5S2 18 39 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT4S1 23 38 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT4S2 21 38 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT2S2 23 35 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT2S2 20 35 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT5S1 23 34 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT4S2 19 34 sblock12697 CCCCCAGGTGTGATTCTGAT #rat_gr349255_libT3S2 20 32 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT1S2 22 31 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT5S1 23 31 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT2S1 21 31 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT3S1 21 29 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT5S1 18 29 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT3S2 21 27 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT5S2 18 26 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT2S1 23 25 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT5S2 21 24 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT5S2 19 23 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT4S2 23 22 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT1S1 21 22 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT4S1 21 22 sblock12697 TCCCCCAGGTGTGATTCT #rat_gr847979_libT2S1 18 22 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT2S2 23 21 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT3S1 23 21 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT4S1 23 21 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT4S2 22 20 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT2S2 21 20 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT4S1 19 20 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT3S2 23 19 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT2S1 23 18 sblock12697 TCCCCCAGGTGTGATTCTGATTC #rat_gr847984_libT5S2 23 18 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT3S1 22 17 sblock12697 TCCCCCAGGTGTGATTCTG #rat_gr847980_libT5S1 19 16 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT3S2 22 13 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT5S1 22 12 sblock12697 TCCCCCAGGTGTGATTCTGAT #rat_gr847982_libT5S1 21 11 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT4S1 22 10 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT5S2 22 10 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT1S2 21 10 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT4S1 24 9 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT1S1 22 9 sblock12697 CCCCCAGGTGTGATTCTGATTCG #rat_gr349258_libT5S2 23 8 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT1S2 24 8 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT4S2 22 8 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT2S1 22 7 sblock12697 CCCCCAGGTGTGATTCTGATTC #rat_gr349257_libT2S2 22 7 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT1S2 22 7 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT2S2 24 6 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT3S2 22 5 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT1S1 24 4 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT3S1 24 4 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT5S1 24 4 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT2S1 21 4 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT3S1 22 4 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT3S2 21 3 sblock12697 CCCCAGGTGTGATTCTGATTCGT #rat_gr348194_libT1S1 23 2 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT2S1 24 2 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT3S2 24 2 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT2S2 21 2 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT4S1 21 2 sblock12697 CCCCCAGGTGTGATTCTGATT #rat_gr349256_libT4S2 21 2 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT2S2 22 2 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT5S2 22 2 sblock12697 CCCCAGGTGTGATTCTGATTCGT #rat_gr348194_libT5S1 23 1 sblock12697 CCCCAGGTGTGATTCTGATTCG #rat_gr348193_libT3S1 22 1 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT4S2 24 1 sblock12697 TCCCCCAGGTGTGATTCTGATTCG #rat_gr847985_libT5S2 24 1 sblock12697 CCCCAGGTGTGATTCTGATTC #rat_gr348192_libT1S1 21 1 sblock12697 CCCCAGGTGTGATTCTGATTC #rat_gr348192_libT4S1 21 1 sblock12697 GTCCCCCAGGTGTGATTCTGATTC #rat_gr637035_libT5S1 24 1 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT2S1 22 1 sblock12697 TCCCCCAGGTGTGATTCTGATT #rat_gr847983_libT4S1 22 1 sblock12697 CCCCAGGTGTGATTCTGAT #rat_gr348191_libT3S1 19 1 sblock12697 CCCCAGGTGTGATTCTGAT #rat_gr348191_libT4S2 19 1 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT1S1 22 3052 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT1S1 18 1265 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT1S2 22 1123 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT1S1 19 794 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT3S1 22 778 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT1S1 20 673 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT4S2 22 664 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT1S2 18 651 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT1S2 19 621 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT1S2 20 541 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT1S1 21 534 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT3S2 22 526 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT4S1 22 506 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT2S2 22 499 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT5S1 22 471 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT2S1 22 413 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libT5S2 22 379 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT3S1 18 359 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT4S2 18 309 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT3S1 20 252 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT3S2 18 246 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT3S1 21 238 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT3S1 19 235 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT4S2 19 229 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT1S2 21 220 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT2S2 18 200 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT3S2 19 199 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT4S2 20 198 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT2S1 18 195 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT4S2 21 185 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT3S2 21 182 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT4S1 18 179 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT2S2 21 172 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT2S2 19 168 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT3S2 20 165 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT5S2 19 161 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT5S1 18 161 sblock12697 TTATCAGAATCTCCAGGG #rat_gr1105191_libT5S2 18 153 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT5S1 20 147 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT2S1 19 144 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT2S2 20 140 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT5S2 20 137 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT4S1 19 134 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT5S2 21 129 sblock12697 TTATCAGAATCTCCAGGGG #rat_gr1105192_libT5S1 19 123 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT5S1 21 119 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT2S1 20 107 sblock12697 TTATCAGAATCTCCAGGGGT #rat_gr1105193_libT4S1 20 98 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT2S1 21 92 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT1S1 23 89 sblock12697 TTATCAGAATCTCCAGGGGTA #rat_gr1105194_libT4S1 21 77 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT1S1 21 59 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT3S1 23 39 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT1S2 23 37 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT5S1 23 36 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT2S2 23 28 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT3S2 23 28 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT5S2 23 28 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT1S2 21 27 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT4S1 23 25 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT3S2 21 25 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT1S2 19 22 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT1S1 18 22 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT4S2 23 21 sblock12697 TTATCAGAATCTCCAGGGGTACT #rat_gr1105196_libT2S1 23 19 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT4S2 21 19 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT5S1 21 18 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT2S2 21 17 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT1S1 20 17 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT1S1 19 16 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT5S2 21 14 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT3S1 21 13 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT4S1 21 13 sblock12697 TATCAGAATCTCCAGGGGTAC #rat_gr793720_libT2S1 21 12 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT1S2 18 11 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT1S1 24 10 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT5S2 18 10 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT4S2 19 9 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT1S2 24 8 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT3S1 19 8 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT2S1 18 8 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT3S1 18 8 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT1S2 20 7 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT3S2 19 7 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT1S1 22 6 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT3S2 24 5 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT3S2 18 5 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT5S1 18 5 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT2S2 24 4 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT3S1 24 4 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT1S2 22 4 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT3S1 20 4 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT2S1 19 4 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT2S1 24 3 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT4S1 24 3 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT3S2 22 3 sblock12697 TCAGAATCTCCAGGGGTAC #rat_gr816212_libT3S1 19 3 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT2S1 20 3 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT2S2 20 3 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT3S2 20 3 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT4S1 19 3 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT5S1 19 3 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT5S2 19 3 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT2S2 18 3 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT4S1 18 3 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT4S2 24 2 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT5S2 24 2 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT3S1 22 2 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT5S1 22 2 sblock12697 CTTATCAGAATCTCCAGGGGTAC #rat_gr459292_libT5S2 23 2 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT4S1 20 2 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT4S2 20 2 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT5S2 20 2 sblock12697 TATCAGAATCTCCAGGGG #rat_gr793715_libT4S2 18 2 sblock12697 CTTATCAGAATCTCCAGGG #rat_gr459290_libT1S1 19 2 sblock12697 ATCAGAATCTCCAGGGGTACTT #rat_gr215977_libT1S1 22 1 sblock12697 ATCAGAATCTCCAGGGGTACTT #rat_gr215977_libT3S1 22 1 sblock12697 TTATCAGAATCTCCAGGGGTACTT #rat_gr1105197_libT5S1 24 1 sblock12697 CAGAATCTCCAGGGGTACT #rat_gr286826_libT5S2 19 1 sblock12697 TCAGAATCTCCAGGGGTACT #rat_gr816213_libT1S1 20 1 sblock12697 TCAGAATCTCCAGGGGTACT #rat_gr816213_libT3S1 20 1 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT2S1 22 1 sblock12697 TATCAGAATCTCCAGGGGTACT #rat_gr793721_libT4S2 22 1 sblock12697 CAGAATCTCCAGGGGTAC #rat_gr286825_libT3S1 18 1 sblock12697 TCAGAATCTCCAGGGGTAC #rat_gr816212_libT1S1 19 1 sblock12697 TCAGAATCTCCAGGGGTAC #rat_gr816212_libT1S2 19 1 sblock12697 TCAGAATCTCCAGGGGTAC #rat_gr816212_libT5S1 19 1 sblock12697 ATCAGAATCTCCAGGGGTAC #rat_gr215976_libT5S1 20 1 sblock12697 TTATCAGAATCTCCAGGGGTAC #rat_gr1105195_libMirbase_rno-miR-361 22 1 sblock12697 CTTATCAGAATCTCCAGGGGTAC #rat_gr459292_libT3S2 23 1 sblock12697 TATCAGAATCTCCAGGGGTA #rat_gr793719_libT5S1 20 1 sblock12697 TATCAGAATCTCCAGGGGT #rat_gr793718_libT2S2 19 1 sblock12697 CTTATCAGAATCTCCAGGGGT #rat_gr459291_libT4S2 21 1 sblock12697 CTTATCAGAATCTCCAGGG #rat_gr459290_libT5S1 19 1 sblock12697 CTTATCAGAATCTCCAGG #rat_gr459289_libT1S1 18 1 sblock12697 CTTATCAGAATCTCCAGG #rat_gr459289_libT4S2 18 1 sblock12697 --------GAAGCTTATCAGAATCTCCAGGGGTACTTATTA--TTTGAAAAGTCCCCCAGGTGTGATTCTGATTCGTTTC-------- humanZ8p86 GGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCT mouseZ38p86 GGGACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTA--TTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCTCCT * *************************** ** ** *************************** * *** sblock12697 +++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000000174 ENSRNOG00000000161 Chm sblock12697 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053667 ENSRNOG00000035544 rno-mir-361 sblock12697 (((((..(((((((((.((.((((.((((.((. ...)).)))).)))).))...)))))))))..))))) 1.000 -29.10 # humanZ8p86 ((((...((((((..(((((((((.((.((((.(((((..........))))).)))).))...)))))))))..))))))...)))) 1.000 -41.60 # mouseZ38p86 ((((...((((((..(((((((((.((.((((.((((.... ......)))).)))).))...)))))))))..))))))...)))) 1.000 -37.40 # #sblock12697 chromosome:X:101800145:101800214:-1 Same_strand|Boundary_non-coding|ENSRNOT00000053667|ENSRNOG00000035544 ## Same_strand|Intronic_coding|ENSRNOT00000000174|ENSRNOG00000000161 ## Same_strand|Exonic_non-coding|ENSRNOT00000053667|ENSRNOG00000035544 ## ENSRNOG00000035544|miRNA|rno-mir-361|rno-mir-361 [Source:miRBase;Acc:MI0003481] ## ENSRNOG00000000161|protein_coding|Chm|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1) (REP-1) (Choroideraemia protein homolog). [Source:UniProtKB/Swiss-Prot;Acc:P37727] ## {MIR: rno-mir-361} #humanZ8p86 chromosome:X:85045289:85045376:-1 Same_strand|Boundary_non-coding|ENST00000358786|ENSG00000188419|protein_coding|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1)(REP-1)(Choroideraemia protein)(TCD protein) [Source:UniProtKB/Swiss-Prot;Acc:P24386] ## Same_strand|Intronic_coding|ENST00000357749|ENSG00000188419|protein_coding|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1)(REP-1)(Choroideraemia protein)(TCD protein) [Source:UniProtKB/Swiss-Prot;Acc:P24386] ## {Repeats: MER5A 1 class=DNA/MER1_type} ## {MIR: hsa-mir-361} #mouseZ38p86 chromosome:X:110188425:110188510:-1 Same_strand|Intronic_coding|ENSMUST00000113388|ENSMUSG00000025531|protein_coding|choroidermia Gene [Source:MGI (curated);Acc:Chm-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083576|ENSMUSG00000065510|miRNA|mmu-mir-361 [Source:miRBase;Acc:MI0000761] ## {Repeats: dust 0 class=dust,MER5B 1 class=DNA/MER1_type} ## {MIR: mmu-mir-361} ========== sblock12715 (miRBase rno-mir-92a-2) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12715: 0.001 randfold humanZ12p86_sblock12715: 0.001 randfold mouseZ42p86_sblock12715: 0.001 #forester humanZ12p86_sblock12715: 0.646533 forester mouseZ42p86_sblock12715: 0.820237 #identity: 89.41 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT3S1 19 7101 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT2S2 19 3785 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT2S1 19 3744 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT3S2 19 3489 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT3S1 20 3088 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT3S1 22 2235 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT3S2 20 1647 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT2S1 20 1570 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT4S2 19 1537 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT2S2 20 1436 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT3S1 18 1330 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT3S2 22 1290 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT3S1 21 1034 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT5S2 19 1025 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT5S1 19 945 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT4S1 19 880 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT3S2 18 767 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT4S2 20 708 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT2S2 22 679 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT4S1 20 649 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT3S2 21 619 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT2S2 18 582 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT1S2 19 571 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT2S1 18 570 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT2S1 22 569 sblock12715 TATTGCACTTGTCCCGGCC #rat_gr801173_libT1S1 19 513 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT2S1 21 493 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT2S2 21 466 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT5S2 20 462 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT5S1 20 365 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT1S1 20 299 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT4S2 22 297 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT4S2 18 295 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT3S1 18 278 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT5S2 22 256 sblock12715 TATTGCACTTGTCCCGGCCT #rat_gr801174_libT1S2 20 251 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT4S1 22 221 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT5S2 18 209 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT4S1 18 203 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT5S1 22 190 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT4S2 21 160 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT2S2 18 148 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT2S1 18 144 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT3S2 18 140 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT1S1 21 134 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT5S2 21 133 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT5S1 18 133 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT4S1 21 123 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT1S2 22 120 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT3S1 19 113 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT1S1 18 112 sblock12715 TATTGCACTTGTCCCGGCCTGA #rat_gr801176_libT1S1 22 106 sblock12715 TATTGCACTTGTCCCGGC #rat_gr801172_libT1S2 18 98 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT2S1 19 82 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT1S2 21 80 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT3S1 23 79 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libT5S1 21 71 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT3S2 19 67 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT2S2 19 64 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT4S2 18 62 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT3S2 23 51 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT4S1 18 51 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT3S1 21 49 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT5S1 18 47 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT5S2 18 44 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT3S2 21 42 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT4S2 19 40 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT2S2 23 35 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT3S1 20 32 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT1S1 18 31 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT2S1 20 29 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT2S2 21 28 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT4S1 19 26 sblock12715 ATTGCACTTGTCCCGGCC #rat_gr243866_libT1S2 18 26 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT2S1 23 23 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT5S1 19 23 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT3S2 20 21 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT2S2 20 20 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT2S1 21 18 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT1S1 23 14 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT5S2 19 14 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT5S1 21 12 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT1S1 19 12 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT4S2 21 11 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT5S2 21 11 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT1S2 23 10 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT4S1 23 10 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT4S2 23 10 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT5S2 23 10 sblock12715 TATTGCACTTGTCCCGGCCTGAG #rat_gr801177_libT5S1 23 9 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT4S1 20 9 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT4S1 21 8 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT4S2 20 8 sblock12715 ATTGCACTTGTCCCGGCCT #rat_gr243867_libT1S2 19 8 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT1S1 21 7 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT5S1 20 7 sblock12715 ATTGCACTTGTCCCGGCCTGA #rat_gr243869_libT1S2 21 6 sblock12715 GTATTGCACTTGTCCCGGCCTGA #rat_gr631624_libT3S2 23 6 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT1S1 20 6 sblock12715 GTATTGCACTTGTCCCGGCCTGA #rat_gr631624_libT3S1 23 4 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT5S2 20 4 sblock12715 TTGCACTTGTCCCGGCCTGAGG #rat_gr1135158_libT2S2 22 3 sblock12715 TTGCACTTGTCCCGGCCTGAGG #rat_gr1135158_libT3S1 22 2 sblock12715 ATTGCACTTGTCCCGGCCTGAG #rat_gr243870_libT3S1 22 2 sblock12715 ATTGCACTTGTCCCGGCCTGAG #rat_gr243870_libT3S2 22 2 sblock12715 GTATTGCACTTGTCCCGGCCTGA #rat_gr631624_libT5S1 23 2 sblock12715 TTGCACTTGTCCCGGCCTG #rat_gr1135156_libT4S1 19 2 sblock12715 ATTGCACTTGTCCCGGCCTG #rat_gr243868_libT1S2 20 2 sblock12715 GTATTGCACTTGTCCCGGCC #rat_gr631622_libT3S2 20 2 sblock12715 TATTGCACTTGTCCCGGCCTGAGGA #rat_gr801179_libT3S2 25 1 sblock12715 TATTGCACTTGTCCCGGCCTGAGG #rat_gr801178_libT3S1 24 1 sblock12715 ATTGCACTTGTCCCGGCCTGAG #rat_gr243870_libT1S1 22 1 sblock12715 ATTGCACTTGTCCCGGCCTGAG #rat_gr243870_libT2S2 22 1 sblock12715 ATTGCACTTGTCCCGGCCTGAG #rat_gr243870_libT4S1 22 1 sblock12715 GCACTTGTCCCGGCCTGA #rat_gr531677_libT2S1 18 1 sblock12715 GCACTTGTCCCGGCCTGA #rat_gr531677_libT5S2 18 1 sblock12715 TGCACTTGTCCCGGCCTGA #rat_gr960965_libT4S2 19 1 sblock12715 TTGCACTTGTCCCGGCCTGA #rat_gr1135157_libT2S1 20 1 sblock12715 GTATTGCACTTGTCCCGGCCTGA #rat_gr631624_libT2S1 23 1 sblock12715 GTATTGCACTTGTCCCGGCCTGA #rat_gr631624_libT5S2 23 1 sblock12715 TGCACTTGTCCCGGCCTG #rat_gr960964_libT3S1 18 1 sblock12715 TTGCACTTGTCCCGGCCTG #rat_gr1135156_libT2S1 19 1 sblock12715 TTGCACTTGTCCCGGCCTG #rat_gr1135156_libT3S2 19 1 sblock12715 TATTGCACTTGTCCCGGCCTG #rat_gr801175_libMirbase_rno-miR-92a 21 1 sblock12715 TTGCACTTGTCCCGGCCT #rat_gr1135155_libT3S1 18 1 sblock12715 TTGCACTTGTCCCGGCCT #rat_gr1135155_libT3S2 18 1 sblock12715 GTATTGCACTTGTCCCGGCCT #rat_gr631623_libT1S1 21 1 sblock12715 GTATTGCACTTGTCCCGGCCT #rat_gr631623_libT3S2 21 1 sblock12715 GTATTGCACTTGTCCCGGCC #rat_gr631622_libT4S1 20 1 sblock12715 GTATTGCACTTGTCCCGGCC #rat_gr631622_libT5S1 20 1 sblock12715 GTATTGCACTTGTCCCGGC #rat_gr631621_libT3S2 19 1 sblock12715 AGGTGGGGATTAGTGCCATTAC #rat_gr192682_libT3S1 22 2 sblock12715 AGGTGGGGATTAGTGCCAT #rat_gr192681_libT3S1 19 2 sblock12715 AGGTGGGGATTAGTGCCATTACTT #rat_gr192683_libT3S1 24 1 sblock12715 AGGTGGGGATTAGTGCCATTAC #rat_gr192682_libT3S2 22 1 sblock12715 ACAGGTGGGGATTAGTGCCAT #rat_gr81019_libT5S1 21 1 sblock12715 AGGTGGGGATTAGTGCCA #rat_gr192680_libT3S1 18 1 sblock12715 ACAGGTGGGGATTAGTGCC #rat_gr81018_libT3S1 19 1 sblock12715 TGCCCATTCATCCACAGGTGGGGATTAGTGCCATTACTTGTGTTAGATAAAAAGTATTGCACTTGTCCCGGCCTGAGGAAGAAAAGAGGGTT humanZ12p86 ------TTCATCCCTGGGTGGGGATTTGTTGCATTACTTGTGTTCTATATAAAGTATTGCACTTGTCCCGGCCTGTGGAAGAAAGGAGG--- mouseZ42p86 -GCCCATTCATCCACAGGTGGGGATTGGTGGCATTACTTGTGTTAGATATAAAGTATTGCACTTGTCCCGGCCTGAGGAAGAAAGAGGG--T ******* ********** ** ************* *** ************************* ******** ** sblock12715 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000053672 ENSRNOG00000035549 rno-mir-92a-2 sblock12715 .((((.(((.(((.(((((.(((((.(((((...(((((............)))))..))))).))))).))))).))).)))....)))). 1.000 -40.80 # humanZ12p86 (((.(((.(((((.(((((..((.(((.(((((((((...)))))).))).)))))..))))).))))).))).)))...... 1.000 -31.90 # mouseZ42p86 ((((.(((.(((.(((((.(((((.(((.(((.(((((((((...)))))).))).)))))).))))).))))).))).)))...))) ) 1.000 -40.60 # #sblock12715 chromosome:X:139740802:139740893:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053672|ENSRNOG00000035549 ## Same_strand|Boundary_non-coding|ENSRNOT00000053672|ENSRNOG00000035549 ## ENSRNOG00000035549|miRNA|rno-mir-92a-2|rno-mir-92a-2 [Source:miRBase;Acc:MI0000879] ## {MIR: rno-mir-92a-2} #humanZ12p86 chromosome:X:133131227:133131309:-1 Same_strand|Boundary_non-coding|ENST00000385299|ENSG00000208034|miRNA|hsa-mir-92a-2 [Source:miRBase;Acc:MI0000094] ## {MIR: hsa-mir-92a-2} #mouseZ42p86 chromosome:X:50095016:50095104:-1 Same_strand|Exonic_non-coding|ENSMUST00000083679|ENSMUSG00000065613|miRNA|mmu-mir-92a-2 [Source:miRBase;Acc:MI0000580] ## {MIR: mmu-mir-92a-2} ========== sblock12723 (miRBase rno-mir-351) [miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK] ========== #randfold sblock12723: 0.004 randfold mouseZ53p86_sblock12723: 0.002 #forester mouseZ53p86_sblock12723: 0.918087 #identity: 96.20 sblock12723 TGGAGAAGAGTATTAACTTC #rat_gr995232_libT5S2 20 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT1S2 21 5 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT3S2 21 3 sblock12723 GGTCAAGAGGCGCCTGGGAACT #rat_gr618868_libT1S1 22 2 sblock12723 GTCAAGAGGCGCCTGGGAACT #rat_gr632404_libT2S2 21 1 sblock12723 GGTCAAGAGGCGCCTGGGAACT #rat_gr618868_libT5S2 22 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT1S1 21 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT2S1 21 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT3S1 21 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT4S2 21 1 sblock12723 GGTCAAGAGGCGCCTGGGAAC #rat_gr618867_libT5S2 21 1 sblock12723 GTCAAGAGGCGCCTGGGAA #rat_gr632403_libT1S1 19 1 sblock12723 GTCAAGAGGCGCCTGGGAA #rat_gr632403_libT3S2 19 1 sblock12723 GTCAAGAGGCGCCTGGGAA #rat_gr632403_libT4S1 19 1 sblock12723 GTCAAGAGGCGCCTGGGAA #rat_gr632403_libT5S2 19 1 sblock12723 GGTCAAGAGGCGCCTGGGAA #rat_gr618866_libT1S1 20 1 sblock12723 GGTCAAGAGGCGCCTGGGAA #rat_gr618866_libT1S2 20 1 sblock12723 GTCAAGAGGCGCCTGGGA #rat_gr632402_libT1S2 18 1 sblock12723 GTCAAGAGGCGCCTGGGA #rat_gr632402_libT5S2 18 1 sblock12723 GGTCAAGAGGCGCCTGGGA #rat_gr618865_libT1S1 19 1 sblock12723 GGTCAAGAGGCGCCTGGGA #rat_gr618865_libT1S2 19 1 sblock12723 GGTCAAGAGGCGCCTGGGA #rat_gr618865_libT5S2 19 1 sblock12723 GGTCAAGAGGCGCCTGGG #rat_gr618864_libT1S2 18 1 sblock12723 GGTCAAGAGGCGCCTGGG #rat_gr618864_libT4S1 18 1 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT5S1 20 959 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT4S2 20 518 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT4S1 20 514 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT5S1 19 510 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT5S2 20 463 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT1S1 20 438 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT4S2 19 334 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT3S1 20 327 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT1S2 20 324 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT4S1 19 319 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT1S1 19 268 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT5S2 19 243 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT5S1 22 222 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT3S2 20 200 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT5S1 23 196 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT3S1 19 185 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT2S1 20 183 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT5S1 18 174 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT1S2 19 164 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT5S1 21 158 sblock12723 TCCCTGAGGAGCCCTTTGAG #rat_gr858371_libT2S2 20 155 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT4S1 22 144 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT4S1 21 140 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT4S2 21 136 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT5S2 22 131 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT4S2 18 128 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT4S2 22 127 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT3S2 19 125 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT5S2 23 124 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT2S1 19 107 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT4S1 18 106 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT1S1 21 101 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT3S1 22 97 sblock12723 TCCCTGAGGAGCCCTTTGA #rat_gr858370_libT2S2 19 96 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT1S1 22 93 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT5S2 18 90 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT1S2 21 89 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT3S1 18 84 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT1S1 18 83 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT1S2 22 81 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT1S2 18 77 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT3S1 21 71 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT5S2 21 71 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT3S1 23 61 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT4S1 23 55 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT3S2 23 52 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT3S2 22 52 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT1S1 23 51 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT1S2 23 50 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT2S1 22 45 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT2S1 21 44 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT4S2 23 43 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT2S2 21 40 sblock12723 TCCCTGAGGAGCCCTTTGAGCC #rat_gr858373_libT2S2 22 37 sblock12723 TCCCTGAGGAGCCCTTTGAGC #rat_gr858372_libT3S2 21 33 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT2S1 18 33 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT2S1 23 30 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT3S2 18 29 sblock12723 TCCCTGAGGAGCCCTTTG #rat_gr858369_libT2S2 18 20 sblock12723 TCCCTGAGGAGCCCTTTGAGCCT #rat_gr858374_libT2S2 23 15 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT5S1 19 8 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT5S2 19 6 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT1S1 21 4 sblock12723 CCCTGAGGAGCCCTTTGAGC #rat_gr361674_libT3S1 20 4 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT4S1 19 4 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT5S1 18 4 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT1S2 19 3 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT3S1 19 3 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT4S2 19 3 sblock12723 CCCTGAGGAGCCCTTTGAGCCTG #rat_gr361677_libT4S2 23 2 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT4S1 21 2 sblock12723 TGAGGAGCCCTTTGAGCCTGA #rat_gr945243_libT4S1 21 1 sblock12723 TCCCTGAGGAGCCCTTTGAGCCTGA #rat_gr858375_libMirbase_rno-miR-351 25 1 sblock12723 GAGGAGCCCTTTGAGCCTG #rat_gr512168_libT1S2 19 1 sblock12723 GAGGAGCCCTTTGAGCCTG #rat_gr512168_libT2S2 19 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCTG #rat_gr361677_libT1S1 23 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCTG #rat_gr361677_libT2S1 23 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCTG #rat_gr361677_libT5S1 23 1 sblock12723 GAGGAGCCCTTTGAGCCT #rat_gr512167_libT3S2 18 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCT #rat_gr361676_libT1S1 22 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCT #rat_gr361676_libT1S2 22 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCT #rat_gr361676_libT3S2 22 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCT #rat_gr361676_libT5S1 22 1 sblock12723 CCCTGAGGAGCCCTTTGAGCCT #rat_gr361676_libT5S2 22 1 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT1S2 21 1 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT4S2 21 1 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT5S1 21 1 sblock12723 CCCTGAGGAGCCCTTTGAGCC #rat_gr361675_libT5S2 21 1 sblock12723 CCCTGAGGAGCCCTTTGAGC #rat_gr361674_libT1S1 20 1 sblock12723 CCCTGAGGAGCCCTTTGAGC #rat_gr361674_libT4S1 20 1 sblock12723 CCCTGAGGAGCCCTTTGAGC #rat_gr361674_libT5S1 20 1 sblock12723 CCCTGAGGAGCCCTTTGAGC #rat_gr361674_libT5S2 20 1 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT1S1 19 1 sblock12723 CCCTGAGGAGCCCTTTGAG #rat_gr361673_libT2S1 19 1 sblock12723 TTCCCTGAGGAGCCCTTTGAG #rat_gr1119411_libT2S2 21 1 sblock12723 TTCCCTGAGGAGCCCTTTGAG #rat_gr1119411_libT5S2 21 1 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT1S1 18 1 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT2S1 18 1 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT3S1 18 1 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT4S1 18 1 sblock12723 CCCTGAGGAGCCCTTTGA #rat_gr361672_libT5S2 18 1 sblock12723 CATGGCACCTCCATTTCCCTGAGGAGCCCTTTGAGCCTGAGGTG--AAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGTATTAACTTC mouseZ53p86 --------CTCCGTTTCCCTGAGGAGCCCTTTGAGCCTGGAGTGAAAAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGT--------- **** ************************** *** ******************************************* sblock12723 ------------------------------------------------- --------------------------------------------------------- #ENSRNOT00000046779 ENSRNOG00000037484 sblock12723 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................... #ENSRNOT00000053675 ENSRNOG00000035552 rno-mir-351 sblock12723 ........(((((.(((((..(((.(((.(((((.((((...(. .....)...))))))))).))).)))))))).)))))..((((....)))). 1.000 -34.00 # mouseZ53p86 (((((.(((((..(((.(((.(((((.((((................))))))))).))).)))))))).)))))...... 1.000 -33.59 # #sblock12723 chromosome:X:139999115:139999210:-1 Opposite_strand|Intronic_coding|ENSRNOT00000046779|ENSRNOG00000037484 ## Same_strand|Boundary_non-coding|ENSRNOT00000053675|ENSRNOG00000035552 ## Same_strand|Exonic_non-coding|ENSRNOT00000053675|ENSRNOG00000035552 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000056740|ENSRNOG00000037484 ## ENSRNOG00000037484|protein_coding|| ## ENSRNOG00000035552|miRNA|rno-mir-351|rno-mir-351 [Source:miRBase;Acc:MI0000642] ## {MIR: rno-mir-351} #mouseZ53p86 chromosome:X:50406442:50406522:-1 Same_strand|Exonic_non-coding|ENSMUST00000083569|ENSMUSG00000065503|miRNA|mmu-mir-351 [Source:miRBase;Acc:MI0000643] ## {Repeats: dust 0 class=dust} ## {MIR: mmu-mir-351} ========== sblock12729 (miRBase rno-mir-505) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK] ========== #randfold sblock12729: 0.001 randfold humanZ30p86_sblock12729: 0.001 randfold mouseZ62p86_sblock12729: 0.001 #forester humanZ30p86_sblock12729: 0.911666 forester mouseZ62p86_sblock12729: 0.914722 #identity: 97.27 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT2S2 24 536 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT4S2 24 408 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT2S1 24 370 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT1S1 23 304 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT2S2 23 265 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT2S2 22 243 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT1S2 23 235 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT2S2 20 224 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT4S1 24 217 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT1S1 24 206 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT3S1 24 190 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT1S1 25 168 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT1S1 18 167 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT1S1 22 160 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT1S1 21 155 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT2S2 25 151 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT2S2 19 150 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT1S2 24 146 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT4S2 20 138 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT4S2 23 137 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT5S1 24 135 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT4S2 25 135 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT4S2 22 125 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT2S2 23 123 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT2S2 23 120 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT5S2 23 120 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT3S1 23 116 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT1S1 20 116 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT2S1 22 114 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT2S2 21 111 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT1S2 22 109 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT2S1 20 106 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT3S1 25 105 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT2S2 22 105 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT1S2 18 104 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT5S2 24 102 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT3S1 22 102 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT3S1 20 102 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT1S2 25 101 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT2S1 25 97 sblock12729 GTCAACACTTGCTGGTTTCCTCTC #rat_gr632233_libT3S2 24 94 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT3S2 23 92 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT1S2 21 91 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT3S1 21 87 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT3S1 18 87 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT4S2 21 84 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT2S1 23 81 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT1S2 20 80 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT2S2 19 80 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT2S2 21 79 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT2S2 18 78 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT2S1 23 77 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT4S2 18 76 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT2S2 21 71 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT4S1 20 71 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT5S2 22 69 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT4S2 23 68 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT4S1 23 66 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT5S2 21 66 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT4S1 25 65 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT4S1 22 65 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT5S1 25 58 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT3S2 22 58 sblock12729 GTCAACACTTGCTGGTTTCCTC #rat_gr632231_libT5S1 22 58 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT3S2 25 52 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT3S2 23 51 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT2S1 23 51 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT3S2 18 51 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT3S1 23 50 sblock12729 CGTCAACACTTGCTGGTTTCCTCTC #rat_gr403876_libT5S2 25 50 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT2S1 21 47 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT3S2 20 46 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT2S1 19 46 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT1S1 22 44 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT2S1 21 44 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT3S2 21 44 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT1S1 20 44 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT5S1 23 43 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT5S2 20 43 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT5S2 18 43 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT3S1 19 42 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libT5S1 20 41 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT4S2 20 41 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT2S1 21 39 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT3S1 21 39 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT2S1 19 39 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT3S2 20 39 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT3S1 23 38 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT4S1 23 36 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT2S2 18 36 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT5S1 18 36 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT4S2 23 35 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT4S2 21 35 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT2S2 20 34 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT1S2 23 33 sblock12729 CGTCAACACTTGCTGGTTTCCTC #rat_gr403874_libT5S1 23 33 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT1S1 23 32 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT5S1 22 32 sblock12729 TCAACACTTGCTGGTTTCCTCTC #rat_gr806275_libT5S2 23 31 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT4S2 19 31 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT2S1 22 30 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT4S1 21 30 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT5S1 21 29 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT1S1 19 29 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT5S2 20 29 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT4S2 18 29 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT1S2 22 28 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT3S1 20 28 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT5S2 18 28 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT1S1 21 27 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT3S1 19 27 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT5S2 19 26 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT1S2 20 26 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT2S2 20 25 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT3S2 19 25 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT2S2 18 24 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT1S2 19 24 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT5S2 23 23 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT1S1 21 23 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT3S2 18 23 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT2S1 18 23 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT3S1 21 22 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT5S2 19 22 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT1S1 19 22 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT4S1 23 21 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT3S1 18 21 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT4S2 22 20 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT2S2 24 20 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT4S2 21 20 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT4S2 19 20 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT2S1 18 20 sblock12729 CGTCAACACTTGCTGGTT #rat_gr403869_libT4S1 18 20 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT3S2 23 19 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT5S2 21 19 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT3S2 21 19 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT4S1 21 19 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT5S2 21 19 sblock12729 CGTCAACACTTGCTGGTTTCC #rat_gr403872_libT5S1 21 19 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT4S1 19 19 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT4S2 24 18 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT4S1 21 18 sblock12729 GTCAACACTTGCTGGTTTCCT #rat_gr632230_libT1S2 21 18 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT3S1 22 18 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT4S1 20 18 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT3S1 19 18 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT1S2 21 17 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT5S1 21 17 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT1S2 18 17 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT4S2 19 17 sblock12729 TCAACACTTGCTGGTTTCCTC #rat_gr806273_libT3S2 21 16 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT1S1 18 16 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT1S1 23 15 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT3S2 24 15 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT3S1 20 15 sblock12729 GTCAACACTTGCTGGTTTC #rat_gr632228_libT5S1 19 15 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT5S2 19 15 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT1S1 24 14 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT1S1 19 14 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT4S1 19 14 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT5S1 18 14 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT2S1 22 13 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT1S2 19 13 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT2S1 18 13 sblock12729 GTCAACACTTGCTGGTTT #rat_gr632227_libT4S1 18 13 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT3S1 22 12 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT4S2 22 12 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT2S2 19 12 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT3S2 19 12 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT1S1 22 11 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT3S1 24 11 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT1S2 19 11 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT2S1 24 10 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT2S2 22 10 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT3S2 22 10 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT3S2 19 10 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT2S1 20 10 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT3S2 22 9 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT5S2 20 9 sblock12729 TCAACACTTGCTGGTTTCC #rat_gr806271_libT5S1 19 9 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT5S1 23 8 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT2S1 20 8 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT4S2 20 8 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT5S2 22 7 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT3S2 20 7 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT5S2 22 7 sblock12729 CGTCAACACTTGCTGGTTTC #rat_gr403871_libT5S1 20 7 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT1S2 22 6 sblock12729 GTCAACACTTGCTGGTTTCCTCT #rat_gr632232_libT1S2 23 6 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT5S2 24 6 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT1S1 20 6 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT1S1 18 6 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT3S1 18 6 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT5S1 19 6 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT2S2 25 5 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT5S1 24 5 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT3S2 18 5 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT4S2 18 5 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT3S1 24 4 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT4S1 22 4 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT1S2 24 4 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT4S1 20 4 sblock12729 CGTCAACACTTGCTGGTTTCCT #rat_gr403873_libT4S1 22 4 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT5S2 18 4 sblock12729 TCAACACTTGCTGGTTTCCTCT #rat_gr806274_libT5S1 22 3 sblock12729 CGTCAACACTTGCTGGTTTCCTCT #rat_gr403875_libT4S1 24 3 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT1S2 20 3 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT1S2 18 3 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT4S1 18 3 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT2S1 24 2 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT2S2 24 2 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT1S1 25 2 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT4S2 25 2 sblock12729 TCAACACTTGCTGGTTTCCT #rat_gr806272_libT5S1 20 2 sblock12729 CGTCAACACTTGCTGGTTT #rat_gr403870_libT2S1 19 2 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT1S2 24 1 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT3S2 24 1 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT4S2 24 1 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT5S1 24 1 sblock12729 TCAACACTTGCTGGTTTCCTCTCT #rat_gr806276_libT5S2 24 1 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT3S1 25 1 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT3S2 25 1 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT4S1 25 1 sblock12729 GTCAACACTTGCTGGTTTCCTCTCT #rat_gr632234_libT5S2 25 1 sblock12729 CGTCAACACTTGCTGGTTTCCTCTCT #rat_gr403877_libT1S1 26 1 sblock12729 CAACACTTGCTGGTTTCCTCTC #rat_gr263611_libT1S1 22 1 sblock12729 CAACACTTGCTGGTTTCCTCTC #rat_gr263611_libT2S2 22 1 sblock12729 CAACACTTGCTGGTTTCCTCTC #rat_gr263611_libT4S2 22 1 sblock12729 CAACACTTGCTGGTTTCCTCTC #rat_gr263611_libT5S1 22 1 sblock12729 CAACACTTGCTGGTTTCCTCT #rat_gr263610_libT2S1 21 1 sblock12729 CAACACTTGCTGGTTTCCTCT #rat_gr263610_libT2S2 21 1 sblock12729 CAACACTTGCTGGTTTCCTCT #rat_gr263610_libT3S1 21 1 sblock12729 CAACACTTGCTGGTTTCCTC #rat_gr263609_libT2S1 20 1 sblock12729 CAACACTTGCTGGTTTCCTC #rat_gr263609_libT4S2 20 1 sblock12729 CAACACTTGCTGGTTTCCTC #rat_gr263609_libT5S2 20 1 sblock12729 CAACACTTGCTGGTTTCCT #rat_gr263608_libT3S1 19 1 sblock12729 CAACACTTGCTGGTTTCCT #rat_gr263608_libT4S1 19 1 sblock12729 CAACACTTGCTGGTTTCCT #rat_gr263608_libT5S2 19 1 sblock12729 CAACACTTGCTGGTTTCC #rat_gr263607_libT2S2 18 1 sblock12729 GTCAACACTTGCTGGTTTCC #rat_gr632229_libMirbase_rno-miR-505 20 1 sblock12729 TCAACACTTGCTGGTTTC #rat_gr806270_libT5S1 18 1 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT1S1 21 39 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT1S1 19 36 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT3S1 21 33 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT2S2 19 24 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT3S1 19 23 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT2S1 21 22 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT1S2 19 21 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT3S2 21 20 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT1S2 21 18 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT3S2 19 17 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT1S1 20 16 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT5S2 21 14 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT1S1 22 13 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT4S2 21 13 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT1S2 20 12 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT4S2 19 12 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT4S1 21 11 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT4S2 20 11 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT1S1 23 10 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT2S1 19 10 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT5S2 19 10 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT1S2 18 9 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT4S1 19 8 sblock12729 GGGAGCCAGGAAGTATTGA #rat_gr604399_libT5S1 19 8 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT3S1 18 8 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT5S1 18 7 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT3S1 23 6 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT1S2 22 6 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT2S2 21 6 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT3S2 20 6 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT1S1 18 6 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT3S2 18 6 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT1S2 23 5 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT5S2 23 5 sblock12729 GGGAGCCAGGAAGTATTGATG #rat_gr604401_libT5S1 21 5 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT3S1 20 5 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT3S1 22 4 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT3S2 22 4 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT5S1 22 4 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT2S2 20 4 sblock12729 GGGAGCCAGGAAGTATTGATGTTTC #rat_gr604405_libT3S1 25 3 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT4S1 23 3 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT4S1 22 3 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT5S2 22 3 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT5S2 20 3 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT5S2 18 3 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT2S1 23 2 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT3S2 23 2 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT5S1 23 2 sblock12729 GGGAGCCAGGAAGTATTGATGT #rat_gr604402_libT4S2 22 2 sblock12729 GGAGCCAGGAAGTATTGAT #rat_gr588044_libT3S1 19 2 sblock12729 GGAGCCAGGAAGTATTGAT #rat_gr588044_libT5S1 19 2 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT4S1 20 2 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT5S1 20 2 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT2S2 18 2 sblock12729 GGGAGCCAGGAAGTATTGATGTTTC #rat_gr604405_libT2S1 25 1 sblock12729 GGGAGCCAGGAAGTATTGATGTTT #rat_gr604404_libT5S2 24 1 sblock12729 GGGAGCCAGGAAGTATTGATGTT #rat_gr604403_libT4S2 23 1 sblock12729 GGAGCCAGGAAGTATTGATGT #rat_gr588045_libT1S1 21 1 sblock12729 GAGCCAGGAAGTATTGATG #rat_gr508442_libT3S1 19 1 sblock12729 GGAGCCAGGAAGTATTGAT #rat_gr588044_libT1S1 19 1 sblock12729 GGAGCCAGGAAGTATTGAT #rat_gr588044_libT4S2 19 1 sblock12729 GGGAGCCAGGAAGTATTGAT #rat_gr604400_libT2S1 20 1 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT4S1 18 1 sblock12729 GGGAGCCAGGAAGTATTG #rat_gr604398_libT4S2 18 1 sblock12729 ------------------AGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTCCTCTCT------------ humanZ30p86 TGGTAAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGTTTAGCGTCAACACTTGCTGGTTTCCTCTCTGGAGCATCGCCA mouseZ62p86 --------TGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA--- ************************************ *********************** ****** sblock12729 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000054392 ENSRNOG00000036269 rno-mir-505 sblock12729 ((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).)) 1.000 -33.30 # humanZ30p86 .(((.....(((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).)))))))). 1.000 -47.90 # mouseZ62p86 .(((((..((((.(((..((((((.((((.((((((((.((....))..)))))))).)))).))))))..))).)))).))))). 1.000 -43.10 # #sblock12729 chromosome:X:145928998:145929064:-1 Same_strand|Exonic_non-coding|ENSRNOT00000054392|ENSRNOG00000036269 ## ENSRNOG00000036269|miRNA|rno-mir-505|rno-mir-505 [Source:miRBase;Acc:MI0003720] ## {MIR: rno-mir-505} #humanZ30p86 chromosome:X:138833969:138834065:-1 Same_strand|Intronic_coding|ENST00000370557|ENSG00000101974|protein_coding|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## Same_strand|Boundary_non-coding|ENST00000370543|ENSG00000101974|protein_coding|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## {MIR: hsa-mir-505} #mouseZ62p86 chromosome:X:57647578:57647663:-1 Same_strand|Intronic_coding|ENSMUST00000101527|ENSMUSG00000062949|protein_coding|ATPase, class VI, type 11C Gene [Source:MGI Symbol;Acc:MGI:1859661] ## Same_strand|Exonic_non-coding|ENSMUST00000093573|ENSMUSG00000070081|miRNA|mmu-mir-505 [Source:miRBase;Acc:MI0004706] ## {MIR: mmu-mir-505} ========== sblock12764 (miRBase rno-mir-221) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12764: 0.001 randfold humanZ5p87_sblock12764: 0.001 randfold mouseZ16p87_sblock12764: 0.001 #forester humanZ5p87_sblock12764: 0.936822 forester mouseZ16p87_sblock12764: 0.954241 #identity: 94.94 sblock12764 TGAATATCCAGGTCTGGGGCATGA #rat_gr929366_libT1S1 24 1 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT1S1 19 77 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT1S2 19 61 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT1S1 23 34 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT1S2 23 31 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT3S2 19 19 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT1S2 18 18 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT3S1 19 18 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT1S2 20 18 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT5S2 19 15 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT1S1 20 13 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT1S2 21 12 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT5S1 19 10 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT1S1 21 9 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT1S1 18 8 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT4S2 19 8 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT3S2 23 8 sblock12764 ACCTGGCATACAATGTAGATTTCT #rat_gr107633_libT1S1 24 7 sblock12764 ACCTGGCATACAATGTAGATTTCT #rat_gr107633_libT1S2 24 7 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT3S1 23 6 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT5S2 23 6 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT2S1 19 5 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT5S2 21 5 sblock12764 AACCTGGCATACAATGTAGA #rat_gr34861_libT1S1 20 4 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT3S2 18 4 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT5S2 18 4 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT2S2 19 4 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT4S2 18 3 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT5S1 18 3 sblock12764 ACCTGGCATACAATGTAGA #rat_gr107628_libT4S1 19 3 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT3S2 20 3 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT4S2 20 3 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT5S2 20 3 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT3S2 21 3 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT5S1 21 3 sblock12764 AACCTGGCATACAATGTA #rat_gr34859_libT1S1 18 2 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT3S1 20 2 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT5S1 20 2 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT4S1 21 2 sblock12764 ACCTGGCATACAATGTAGATTT #rat_gr107631_libT1S1 22 2 sblock12764 ACCTGGCATACAATGTAGATTT #rat_gr107631_libT1S2 22 2 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT4S2 23 2 sblock12764 AACCTGGCATACAATGTA #rat_gr34859_libT3S2 18 1 sblock12764 AACCTGGCATACAATGTAG #rat_gr34860_libT1S1 19 1 sblock12764 AACCTGGCATACAATGTAGA #rat_gr34861_libT2S1 20 1 sblock12764 AACCTGGCATACAATGTAGA #rat_gr34861_libT3S2 20 1 sblock12764 AACCTGGCATACAATGTAGA #rat_gr34861_libT5S1 20 1 sblock12764 AACCTGGCATACAATGTAGA #rat_gr34861_libT5S2 20 1 sblock12764 AACCTGGCATACAATGTAGATTT #rat_gr34862_libT4S2 23 1 sblock12764 AACCTGGCATACAATGTAGATTTC #rat_gr34863_libT1S1 24 1 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT2S2 18 1 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT3S1 18 1 sblock12764 ACCTGGCATACAATGTAG #rat_gr107627_libT4S1 18 1 sblock12764 ACCTGGCATACAATGTAGAT #rat_gr107629_libT4S1 20 1 sblock12764 ACCTGGCATACAATGTAGATT #rat_gr107630_libT3S1 21 1 sblock12764 ACCTGGCATACAATGTAGATTT #rat_gr107631_libT5S1 22 1 sblock12764 ACCTGGCATACAATGTAGATTT #rat_gr107631_libT5S2 22 1 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT2S1 23 1 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT2S2 23 1 sblock12764 ACCTGGCATACAATGTAGATTTC #rat_gr107632_libT5S1 23 1 sblock12764 ACCTGGCATACAATGTAGATTTCT #rat_gr107633_libT3S1 24 1 sblock12764 ACCTGGCATACAATGTAGATTTCT #rat_gr107633_libT5S1 24 1 sblock12764 ACCTGGCATACAATGTAGATTTCT #rat_gr107633_libT5S2 24 1 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT1S1 19 1327 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT1S1 20 1107 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT1S2 19 823 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT1S1 23 747 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT1S2 20 638 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT1S1 18 599 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT1S2 18 381 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT1S2 23 380 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT5S2 19 366 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT3S2 19 291 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT1S1 21 232 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT1S1 22 228 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT3S1 19 225 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT5S2 20 221 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT3S2 20 198 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT1S2 22 196 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT5S2 18 185 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT5S1 20 176 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT5S1 23 161 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT5S1 19 157 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT3S2 18 147 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT1S2 21 142 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT3S1 20 130 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT5S2 23 128 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT3S2 23 126 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT3S1 18 112 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT5S1 18 89 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT3S1 23 86 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT5S2 21 82 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT5S2 22 69 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT5S1 22 67 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT4S2 19 66 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT3S2 21 63 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT1S1 24 55 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT3S1 21 54 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT3S2 22 54 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT4S2 20 42 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT5S1 21 38 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT3S1 22 35 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT4S2 18 29 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT2S1 19 29 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT1S2 24 27 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT4S1 19 26 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT4S2 22 25 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT4S1 20 24 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT4S2 23 20 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT2S1 20 16 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT2S1 18 14 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT2S1 23 14 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT3S2 24 12 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT4S2 21 11 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT4S1 18 10 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT4S1 23 10 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT4S1 21 9 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT4S1 22 9 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT2S1 22 7 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT2S1 24 6 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT3S1 24 6 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT5S1 24 6 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT2S1 21 5 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT5S2 24 5 sblock12764 AGCTACATTGTCTGCTGG #rat_gr163348_libT2S2 18 3 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT4S2 24 3 sblock12764 GCTACATTGTCTGCTGGG #rat_gr566672_libT1S2 18 3 sblock12764 AGCTACATTGTCTGCTGGGT #rat_gr163350_libT2S2 20 2 sblock12764 AGCTACATTGTCTGCTGGGTTTCA #rat_gr163354_libT4S1 24 2 sblock12764 GCTACATTGTCTGCTGGGTTTC #rat_gr566675_libT1S1 22 2 sblock12764 GCTACATTGTCTGCTGGGTTTC #rat_gr566675_libT1S2 22 2 sblock12764 CAGCTACATTGTCTGCTG #rat_gr295194_libT1S2 18 1 sblock12764 AGCTACATTGTCTGCTGGG #rat_gr163349_libT2S2 19 1 sblock12764 AGCTACATTGTCTGCTGGGTT #rat_gr163351_libT2S2 21 1 sblock12764 AGCTACATTGTCTGCTGGGTTT #rat_gr163352_libT2S2 22 1 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libMirbase_rno-miR-221 23 1 sblock12764 AGCTACATTGTCTGCTGGGTTTC #rat_gr163353_libT2S2 23 1 sblock12764 GCTACATTGTCTGCTGGG #rat_gr566672_libT1S1 18 1 sblock12764 GCTACATTGTCTGCTGGGT #rat_gr566673_libT1S1 19 1 sblock12764 GCTACATTGTCTGCTGGGTTT #rat_gr566674_libT1S2 21 1 sblock12764 GCTACATTGTCTGCTGGGTTTC #rat_gr566675_libT3S2 22 1 sblock12764 CTACATTGTCTGCTGGGT #rat_gr410353_libT1S2 18 1 sblock12764 ACATTGTCTGCTGGGTTTC #rat_gr85620_libT1S1 19 1 sblock12764 ACATTGTCTGCTGGGTTTC #rat_gr85620_libT3S1 19 1 sblock12764 CATTGTCTGCTGGGTTTC #rat_gr317061_libT1S1 18 1 sblock12764 -------------------TGAATATCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTTGTTAGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAAGCAT-TTCTC---------------- humanZ5p87 GTGAGAATTACTTGCAAGCTGAACATCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTCGTTAGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAAACATGTTCTCCATTGGCTGTCTCAC- mouseZ16p87 -----GATAATTTGCAGGCTGAACATCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTTGTTAGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAATCAT-TTCTTCATTGGCCTACTTATC **** ************************************************ ********************************************** *** **** sblock12764 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> ..... #ENSRNOT00000053754 ENSRNOG00000035631 rno-mir-221 sblock12764 ......(((((((....(((.((((((..(((.(((((((((....(((((((.....))).))))))))))))).)))..)).)))).))))))))))..... ..... 1.000 -44.00 # humanZ5p87 ((((((..........((((((((((((((((....(((.((((((..(((.(((((((((....(((((((.....)))).)))))))))))).)))..)))).)).))))))))))....)))))......)))).)))))) 0.985 -55.10 # mouseZ16p87 (((((.....(((((((...(((((((....(((.((((((..(((.(((((((((....(((((((.....)))).)))))))))))).)))..)))).)).))))))))))..... .......)))))))..))))) 0.912 -48.56 # #sblock12764 chromosome:X:14935617:14935725:1 Same_strand|Boundary_non-coding|ENSRNOT00000053754|ENSRNOG00000035631 ## Same_strand|Exonic_non-coding|ENSRNOT00000053754|ENSRNOG00000035631 ## ENSRNOG00000035631|miRNA|rno-mir-221|rno-mir-221 [Source:miRBase;Acc:MI0000961] ## {MIR: rno-mir-221} #humanZ5p87 chromosome:X:45490514:45490657:-1 Same_strand|Boundary_non-coding|ENST00000385135|ENSG00000207870|miRNA|hsa-mir-221 [Source:miRBase;Acc:MI0000298] ## {MIR: hsa-mir-221} #mouseZ16p87 chromosome:X:18723395:18723533:-1 Same_strand|Boundary_non-coding|ENSMUST00000083488|ENSMUSG00000065422|miRNA|mmu-mir-221 [Source:miRBase;Acc:MI0000709] ## {MIR: mmu-mir-221} ========== sblock12778 (miRBase rno-mir-500) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12778: 0.001 randfold humanZ29p87_sblock12778: 0.001 randfold mouseZ55p87_sblock12778: 0.001 #forester humanZ29p87_sblock12778: 0.909468 forester mouseZ55p87_sblock12778: 1 #identity: 95.96 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT3S2 19 12 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT3S1 19 11 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT3S2 20 8 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT1S1 19 6 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT3S2 25 6 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT1S2 19 5 sblock12778 AATCCTTGCTATCTGGGTGCTT #rat_gr61380_libT3S2 22 5 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT1S2 25 5 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT5S2 25 5 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT2S1 19 4 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT3S1 20 4 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT5S2 20 4 sblock12778 AATCCTTGCTATCTGGGTGCTT #rat_gr61380_libT3S1 22 4 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT1S1 25 4 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT1S1 18 3 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT4S1 19 3 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT5S1 19 3 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT5S2 19 3 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT1S1 20 3 sblock12778 AATCCTTGCTATCTGGGTGCT #rat_gr61379_libT1S1 21 3 sblock12778 AATCCTTGCTATCTGGGTGCT #rat_gr61379_libT1S2 21 3 sblock12778 AATCCTTGCTATCTGGGTGCT #rat_gr61379_libT3S1 21 3 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT1S2 18 2 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT3S1 18 2 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT3S2 18 2 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT4S2 19 2 sblock12778 AATCCTTGCTATCTGGGTGCT #rat_gr61379_libT3S2 21 2 sblock12778 AATCCTTGCTATCTGGGTGCTT #rat_gr61380_libT1S1 22 2 sblock12778 AATCCTTGCTATCTGGGTGCTT #rat_gr61380_libT5S2 22 2 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT3S1 25 2 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT4S2 25 2 sblock12778 TAATCCTTGCTATCTGGGTGC #rat_gr732629_libT1S1 21 1 sblock12778 TAATCCTTGCTATCTGGGTGCT #rat_gr732630_libT3S2 22 1 sblock12778 TAATCCTTGCTATCTGGGTGCTT #rat_gr732631_libT4S2 23 1 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT2S1 18 1 sblock12778 AATCCTTGCTATCTGGGT #rat_gr61376_libT2S2 18 1 sblock12778 AATCCTTGCTATCTGGGTG #rat_gr61377_libT2S2 19 1 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT2S2 20 1 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT4S1 20 1 sblock12778 AATCCTTGCTATCTGGGTGC #rat_gr61378_libT4S2 20 1 sblock12778 AATCCTTGCTATCTGGGTGCTT #rat_gr61380_libT1S2 22 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAG #rat_gr61381_libT1S1 24 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAG #rat_gr61381_libT1S2 24 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAG #rat_gr61381_libT3S2 24 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAG #rat_gr61381_libT5S2 24 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAGT #rat_gr61382_libT5S1 25 1 sblock12778 AATCCTTGCTATCTGGGTGCTTAGTG #rat_gr61383_libT3S2 26 1 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT3S1 19 418 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT3S1 21 390 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT3S2 19 345 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT3S2 21 288 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT3S1 18 235 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT3S2 18 152 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT2S2 19 114 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT1S1 19 113 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT4S2 21 106 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT4S2 19 103 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT3S1 20 103 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT2S2 21 103 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT3S2 22 101 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT2S1 19 94 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT3S1 22 90 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT1S1 21 84 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT2S2 18 78 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT3S2 20 76 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT1S2 19 75 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT4S2 18 68 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT1S2 21 68 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT4S1 19 65 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT3S1 23 60 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT5S1 19 57 sblock12778 AATGCACCTGGGCAAGGGT #rat_gr62755_libT5S2 19 55 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT2S1 21 55 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT4S1 21 53 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT1S1 18 52 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT5S2 21 52 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT1S2 18 50 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT2S1 18 50 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT5S2 18 48 sblock12778 AATGCACCTGGGCAAGGGTTC #rat_gr62757_libT5S1 21 41 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT3S2 23 40 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT1S2 22 37 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT4S1 18 31 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT2S2 22 31 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT1S1 20 30 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT1S1 22 28 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT4S2 22 28 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT2S2 20 26 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT5S2 20 26 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT2S1 22 24 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT4S1 22 22 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT1S1 23 22 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT2S1 20 21 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT4S1 23 20 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT4S2 23 20 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT5S2 22 19 sblock12778 AATGCACCTGGGCAAGGG #rat_gr62754_libT5S1 18 18 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT4S1 20 17 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT5S2 23 17 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT1S2 20 15 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT4S2 20 14 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT2S2 23 13 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT1S2 23 11 sblock12778 AATGCACCTGGGCAAGGGTT #rat_gr62756_libT5S1 20 9 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libT5S1 22 6 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT5S1 23 6 sblock12778 AATGCACCTGGGCAAGGGTTCAG #rat_gr62759_libT2S1 23 5 sblock12778 AATGCACCTGGGCAAGGGTTCAGA #rat_gr62760_libT3S2 24 2 sblock12778 AATGCACCTGGGCAAGGGTTCAGA #rat_gr62760_libT4S2 24 2 sblock12778 CAATGCACCTGGGCAAGGGTTC #rat_gr273926_libT3S2 22 1 sblock12778 CAATGCACCTGGGCAAGGGTTCAG #rat_gr273927_libT1S1 24 1 sblock12778 AATGCACCTGGGCAAGGGTTCA #rat_gr62758_libMirbase_rno-miR-500 22 1 sblock12778 AATGCACCTGGGCAAGGGTTCAGA #rat_gr62760_libT1S1 24 1 sblock12778 AATGCACCTGGGCAAGGGTTCAGA #rat_gr62760_libT2S2 24 1 sblock12778 ATGCACCTGGGCAAGGGT #rat_gr228994_libT1S1 18 1 sblock12778 ATGCACCTGGGCAAGGGTTCAG #rat_gr228995_libT3S1 22 1 sblock12778 ATGCACCTGGGCAAGGGTTCAGA #rat_gr228996_libT4S1 23 1 sblock12778 TGCACCTGGGCAAGGGTT #rat_gr960471_libT3S2 18 1 sblock12778 GCACCTGGGCAAGGGTTC #rat_gr530341_libT3S1 18 1 sblock12778 --------------CCCCCTCTCTAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTCAGAGAAGGTGA-------------------- humanZ29p87 CCTTCTGCCCTGCTCCCCCTCTCTAATCCTTGCTATCTGGGTGC-TAGTGCTGGCTCAATGCAATGCACCTGGGCAAGGATTCAGAGAGGGGGAGCTCAACTGTACCAAGAAGG mouseZ55p87 -----------------------TAATCCTTGCTATCTGGGTGCTTAGTGCTATCTCAATGCAATGCACCTGGGCAAGGGTTC------------------------------- ********************* ******* ************************* *** sblock12778 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>... #ENSRNOT00000054385 ENSRNOG00000036262 rno-mir-500 sblock12778 ..((.((((((((((((((...(..(((((....(((.........)))..)))))..)))))))))).))))).))... 1.000 -36.40 # humanZ29p87 ((((((.....((((((((((((((((((((((...(((((((( ...(((.........)))..))))))))))))))))).)))))))))))))............)))))) 0.975 -63.33 # mouseZ55p87 .(((((((((...((((((((....(((.........)))..))))))))))))))))). 1.000 -26.30 # #sblock12778 chromosome:X:27334609:27334688:1 Same_strand|Exonic_non-coding|ENSRNOT00000054385|ENSRNOG00000036262 ## Same_strand|Boundary_non-coding|ENSRNOT00000054385|ENSRNOG00000036262 ## ENSRNOG00000036262|miRNA|rno-mir-500|rno-mir-500 [Source:miRBase;Acc:MI0006153] ## {MIR: rno-mir-500} #humanZ29p87 chromosome:X:49665936:49666048:1 Same_strand|Intronic_non-coding|ENST00000376091|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## Same_strand|Boundary_non-coding|ENST00000307367|ENSG00000171365|protein_coding|Chloride channel protein 5 (ClC-5) [Source:UniProtKB/Swiss-Prot;Acc:P51795] ## {MIR: hsa-mir-502} #mouseZ55p87 chromosome:X:6814791:6814910:-1 Same_strand|Boundary_non-coding|ENSMUST00000004428|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## Same_strand|Intronic_coding|ENSMUST00000115746|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## {MIR: mmu-mir-500} ========== sblock12842 (miRBase rno-mir-224) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock12842: 0.001 randfold humanZ33p87_sblock12842: 0.001 randfold mouseZ65p87_sblock12842: 0.001 #forester humanZ33p87_sblock12842: 0.804109 forester mouseZ65p87_sblock12842: 0.961572 #identity: 95.36 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT4S2 19 61 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT4S2 18 56 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT4S2 22 42 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT4S2 20 32 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT4S1 22 32 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT4S1 18 27 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT3S1 22 27 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT4S1 19 25 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT4S1 20 25 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT3S1 18 20 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT5S1 22 20 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT3S2 19 18 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT5S2 18 16 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT3S2 18 15 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT5S2 19 14 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT5S1 19 12 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT3S1 20 12 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT4S1 21 12 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT3S2 22 12 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT3S2 20 11 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT5S1 18 10 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT3S1 19 10 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT5S2 22 10 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT3S1 21 9 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT5S1 20 8 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT5S2 20 8 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT4S2 21 8 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT5S2 21 7 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT1S2 20 6 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT2S1 22 6 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT4S1 23 6 sblock12842 CAAGTCACTAGTGGTTCCGTTTAG #rat_gr272034_libT4S2 24 6 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT2S1 19 5 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT2S2 18 4 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT1S1 20 4 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT2S2 22 4 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT1S1 18 3 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT2S1 20 3 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT3S2 21 3 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT5S2 23 3 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT1S2 18 2 sblock12842 CAAGTCACTAGTGGTTCCGT #rat_gr272030_libT2S2 20 2 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT1S1 22 2 sblock12842 CAAGTCACTAGTGGTTCCGTTT #rat_gr272032_libT1S2 22 2 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT3S1 23 2 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT5S1 23 2 sblock12842 CAAGTCACTAGTGGTTCC #rat_gr272028_libT2S1 18 1 sblock12842 CAAGTCACTAGTGGTTCCG #rat_gr272029_libT1S2 19 1 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT1S1 21 1 sblock12842 CAAGTCACTAGTGGTTCCGTT #rat_gr272031_libT2S1 21 1 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libMirbase_rno-miR-224 23 1 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT3S2 23 1 sblock12842 CAAGTCACTAGTGGTTCCGTTTA #rat_gr272033_libT4S2 23 1 sblock12842 CAAGTCACTAGTGGTTCCGTTTAG #rat_gr272034_libT4S1 24 1 sblock12842 CAAGTCACTAGTGGTTCCGTTTAGT #rat_gr272035_libT1S2 25 1 sblock12842 AAGTCACTAGTGGTTCCG #rat_gr55436_libT3S1 18 1 sblock12842 AAGTCACTAGTGGTTCCGTTT #rat_gr55437_libT1S2 21 1 sblock12842 AAATGGTGCCCTAGTGACTACA #rat_gr22153_libT3S1 22 2 sblock12842 AAATGGTGCCCTAGTGACT #rat_gr22150_libT4S2 19 1 sblock12842 AAATGGTGCCCTAGTGACTA #rat_gr22151_libT3S1 20 1 sblock12842 AAATGGTGCCCTAGTGACTAC #rat_gr22152_libT3S1 21 1 sblock12842 AAATGGTGCCCTAGTGACTAC #rat_gr22152_libT4S2 21 1 sblock12842 AAATGGTGCCCTAGTGACTACA #rat_gr22153_libT2S2 22 1 sblock12842 AAATGGTGCCCTAGTGACTACA #rat_gr22153_libT4S2 22 1 sblock12842 AATGGTGCCCTAGTGACTAC #rat_gr63754_libT4S1 20 1 sblock12842 AATGGTGCCCTAGTGACTACA #rat_gr63755_libT3S2 21 1 sblock12842 AATGGTGCCCTAGTGACTACA #rat_gr63755_libT4S2 21 1 sblock12842 ATGGTGCCCTAGTGACTACAA #rat_gr235415_libT5S1 21 1 sblock12842 --------------------GGGCTTTCAAGTCACTAGTGGTTCCGTTTAGTAGATGGTTTTTGCATTGTTTCAAAATGGTGCCCTAGTGACTACAAAGCCC------------------- humanZ33p87 ---GAGAAGATAAGGCCCAGGGGCTTTCAAGTCACTAGTGGTTCCGTTTAGTAGATGA-TTGTGCATTGTTTCAAAATGGTGCCCTAGTGACTACAAAGCCCCAGAGCCAGCATCATCATC mouseZ65p87 GCAGAAGAGACAAGGCCCGGGGGCTTTTAAGTCACTAGTGGTTCCGTTTAGTAGATGGTTTGTGCATTGTTTCAAAATGGTGCCCTAGTGACTACAAAGCCCCAGAGCCAGCATCATCGGT ******* ***************************** ** **************************************** sblock12842 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000022431 ENSRNOG00000016533 Gabre sblock12842 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000040784 ENSRNOG00000016533 Gabre sblock12842 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000039949 ENSRNOG00000016533 Gabre sblock12842 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000045782 ENSRNOG00000016533 Gabre sblock12842 ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... #ENSRNOT00000053634 ENSRNOG00000035511 rno-mir-224 sblock12842 (((((((..(((((((((.(((.((((((.(.(((..((......))..)))).)))))).))))))))))))..))))))) 1.000 -37.10 # humanZ33p87 ..((.(((..(((...((((((((..(((((((((.(((.((((((....((((. .....))))......)))))).))))))))))))..))))))))...)))...))).))... 1.000 -47.40 # mouseZ65p87 ...((.((.....(((...((((((((..(((((((((.(((.((((((...(((..((......))..)))..)))))).))))))))))))..))))))))...)))....)).))... 0.995 -48.10 # #sblock12842 chromosome:X:158348507:158348588:1 Same_strand|Intronic_coding|ENSRNOT00000045782|ENSRNOG00000016533 ## Same_strand|Exonic_non-coding|ENSRNOT00000053634|ENSRNOG00000035511 ## ENSRNOG00000035511|miRNA|rno-mir-224|rno-mir-224 [Source:miRBase;Acc:MI0003483] ## ENSRNOG00000016533|protein_coding|Gabre|gamma-aminobutyric acid A receptor, epsilon [Source:RefSeq_peptide;Acc:NP_075579] ## {MIR: rno-mir-224} #humanZ33p87 chromosome:X:150877687:150877803:-1 Same_strand|Intronic_coding|ENST00000370328|ENSG00000102287|protein_coding|Gamma-aminobutyric acid receptor subunit epsilon Precursor (GABA(A) receptor subunit epsilon) [Source:UniProtKB/Swiss-Prot;Acc:P78334] ## Same_strand|Boundary_non-coding|ENST00000384889|ENSG00000207621|miRNA|hsa-mir-224 [Source:miRBase;Acc:MI0000301] ## {MIR: hsa-mir-224} #mouseZ65p87 chromosome:X:69506351:69506471:-1 Same_strand|Intronic_coding|ENSMUST00000114557|ENSMUSG00000031340|protein_coding|gamma-aminobutyric acid (GABA-A) receptor, subunit epsilon Gene [Source:MGI (curated);Acc:Gabre-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083608|ENSMUSG00000065542|miRNA|mmu-mir-224 [Source:miRBase;Acc:MI0000711] ## {MIR: mmu-mir-224} ========== sblock1727 (miRBase rno-mir-99b) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK] ========== #randfold sblock1727: 0.042 randfold humanZ35p87_sblock1727: 0.161 randfold mouseZ66p87_sblock1727: 0.161 #forester humanZ35p87_sblock1727: 1 forester mouseZ66p87_sblock1727: 1 #identity: 100.00 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT1S1 21 841 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT1S2 19 722 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT1S1 19 682 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT1S1 18 679 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT5S2 21 557 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT5S2 18 496 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT5S1 21 475 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT1S1 20 437 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT4S2 21 430 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT5S2 20 385 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT4S2 18 374 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT5S2 19 363 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT5S1 18 349 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT1S2 18 332 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT4S2 19 306 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT5S1 20 305 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT5S1 19 293 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT1S2 21 274 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT4S1 21 262 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT3S1 21 246 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT4S2 20 242 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT4S1 18 172 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT4S1 20 167 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT4S1 19 149 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT3S1 19 138 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT1S2 20 137 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT3S1 18 134 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT5S2 22 134 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT3S1 20 131 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT3S2 21 117 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT3S2 18 107 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT5S1 22 103 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT3S2 19 102 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT4S2 22 84 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT2S2 21 80 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT2S2 18 71 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT2S2 19 65 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT4S1 22 56 sblock1727 CACCCGTAGAACCGACCTTGC #rat_gr281013_libT2S1 21 55 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT3S2 20 54 sblock1727 CACCCGTAGAACCGACCT #rat_gr281010_libT2S1 18 51 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT2S2 20 48 sblock1727 CACCCGTAGAACCGACCTTG #rat_gr281012_libT2S1 20 37 sblock1727 CACCCGTAGAACCGACCTT #rat_gr281011_libT2S1 19 35 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT1S1 22 32 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT3S1 22 24 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT2S2 22 19 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT1S2 22 9 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT1S1 20 8 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT3S2 22 7 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT1S1 18 5 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT5S2 18 4 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT1S2 20 4 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT3S2 20 4 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT4S1 20 4 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT4S2 20 4 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libT2S1 22 3 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT1S2 18 3 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT5S1 18 3 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT1S1 19 3 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT4S2 19 3 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT5S2 19 3 sblock1727 ACCCGTAGAACCGACCTTGCG #rat_gr98537_libT1S1 21 3 sblock1727 ACCCGTAGAACCGACCTTGCG #rat_gr98537_libT4S2 21 3 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT5S2 19 3 sblock1727 CCACCCGTAGAACCGACC #rat_gr328294_libT1S2 18 2 sblock1727 CCACCCGTAGAACCGACCTTGC #rat_gr328295_libT1S1 22 2 sblock1727 CACCCGTAGAACCGACCTTGCGG #rat_gr281015_libT5S1 23 2 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT4S2 18 2 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT1S2 19 2 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT3S1 19 2 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT5S1 19 2 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT5S1 20 2 sblock1727 ACCCGTAGAACCGACCTTGCG #rat_gr98537_libT3S1 21 2 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT1S1 19 2 sblock1727 CCACCCGTAGAACCGACC #rat_gr328294_libT3S1 18 1 sblock1727 CCACCCGTAGAACCGACC #rat_gr328294_libT5S2 18 1 sblock1727 CCACCCGTAGAACCGACCTTGC #rat_gr328295_libT5S1 22 1 sblock1727 CCACCCGTAGAACCGACCTTGC #rat_gr328295_libT5S2 22 1 sblock1727 CACCCGTAGAACCGACCTTGCG #rat_gr281014_libMirbase_rno-miR-99b 22 1 sblock1727 CACCCGTAGAACCGACCTTGCGG #rat_gr281015_libT1S1 23 1 sblock1727 CACCCGTAGAACCGACCTTGCGG #rat_gr281015_libT3S1 23 1 sblock1727 CACCCGTAGAACCGACCTTGCGG #rat_gr281015_libT5S2 23 1 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT2S1 18 1 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT2S2 18 1 sblock1727 ACCCGTAGAACCGACCTT #rat_gr98534_libT4S1 18 1 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT2S1 19 1 sblock1727 ACCCGTAGAACCGACCTTG #rat_gr98535_libT3S2 19 1 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT3S1 20 1 sblock1727 ACCCGTAGAACCGACCTTGC #rat_gr98536_libT5S2 20 1 sblock1727 ACCCGTAGAACCGACCTTGCG #rat_gr98537_libT5S1 21 1 sblock1727 ACCCGTAGAACCGACCTTGCG #rat_gr98537_libT5S2 21 1 sblock1727 CCCGTAGAACCGACCTTG #rat_gr357871_libT5S1 18 1 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT1S2 19 1 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT2S2 19 1 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT4S1 19 1 sblock1727 CCCGTAGAACCGACCTTGC #rat_gr357872_libT4S2 19 1 sblock1727 CCCGTAGAACCGACCTTGCG #rat_gr357873_libT1S1 20 1 sblock1727 CCGTAGAACCGACCTTGC #rat_gr369224_libT5S2 18 1 sblock1727 CCGTAGAACCGACCTTGCG #rat_gr369225_libT4S2 19 1 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT1S2 20 155 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT1S1 20 96 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT5S1 20 83 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT1S2 18 82 sblock1727 CAAGCTCGTGTCTGTGGGTCCGT #rat_gr269657_libT1S2 23 70 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT1S2 21 67 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT4S1 20 58 sblock1727 CAAGCTCGTGTCTGTGGGTCCG #rat_gr269656_libT1S2 22 55 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT1S1 18 48 sblock1727 CAAGCTCGTGTCTGTGGGT #rat_gr269653_libT5S1 19 45 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT3S1 20 42 sblock1727 CAAGCTCGTGTCTGTGGGT #rat_gr269653_libT1S2 19 41 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT5S2 20 39 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT3S2 20 35 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT1S1 21 31 sblock1727 CAAGCTCGTGTCTGTGGGTCCG #rat_gr269656_libT1S1 22 31 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT4S1 18 28 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT4S1 21 25 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT5S1 21 24 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT5S2 18 22 sblock1727 CAAGCTCGTGTCTGTGGGT #rat_gr269653_libT1S1 19 22 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT3S2 21 22 sblock1727 CAAGCTCGTGTCTGTGGGTCCG #rat_gr269656_libT4S1 22 22 sblock1727 CAAGCTCGTGTCTGTGGGTCCGT #rat_gr269657_libT1S1 23 22 sblock1727 CAAGCTCGTGTCTGTGGGTCCGT #rat_gr269657_libT5S1 23 21 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT5S1 18 20 sblock1727 CAAGCTCGTGTCTGTGGGT #rat_gr269653_libT4S2 19 20 sblock1727 CAAGCTCGTGTCTGTGGGTCCGT #rat_gr269657_libT4S1 23 19 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT3S2 18 18 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT2S1 20 18 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT2S2 20 18 sblock1727 CAAGCTCGTGTCTGTGGGTC #rat_gr269654_libT4S2 20 18 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr269655_libT3S1 21 18 sblock1727 CAAGCTCGTGTCTGTGGG #rat_gr269652_libT3S1 18 16 sblock1727 CAAGCTCGTGTCTGTGGGTCCGT #rat_gr269657_libT3S1 23 16 sblock1727 CAAGCTCGTGTCTGTGGGTCC #rat_gr2696