miR-Intess: classification

other miRBase miRNAs

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (47 loci)

rno-mir-770

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-770 5arm	332	331	0	0	0	0	1	2	0	0
rno-mir-770 3arm	592	503	0	0	0	2	0	3	1	2
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-770 5arm	0.011	0.014	0	0	0	0	0.000	0.000	0	0
rno-mir-770 3arm	0.020	0.022	0	0	0	0.000	0	0.000	0.000	0.000

sblock10436 (miRBase rno-mir-770) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-770	0.001	no	no	0.65/0.74	18/24/0.48	0.0 0.5	0.7 0.7	550 935	0 0	4 6	0 0	10 10	6 4	5arm 3arm	1 1	nd nd	0.29 0.19	4 2	1769	7	-1	2

		reads	miRBase family seed
seed	-----------------------GCACCAC--------------------------------------------------------------------	666	miR-770
seed	----------------------------------------------------------UGGGCCU---------------------------------	491	novel
seed	-----------------------------------------------------------GGGCCUG--------------------------------	306	novel
seed	---------------------------------------------------------GUGGGCC----------------------------------	306	novel
		len	cloning frequencies
			T1S1	T1S2	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------AGCACCACGTGTCTGGGCCAC-------------------------------------------------------	21	134	154	-	1	2	-	-
	---------------------------------------------------------GTGGGCCTGACGTGGAGCT----------------------	19	120	102	-	-	1	-	2
	---------------------------------------------------------GTGGGCCTGACGTGGAGC-----------------------	18	71	85	-	-	-	1	-
	----------------------AGCACCACGTGTCTGGGCC---------------------------------------------------------	19	78	67	-	-	-	-	-
	--------------------------------------------------------CGTGGGCCTGACGTGGAGC-----------------------	19	65	58	-	-	1	-	-
	----------------------AGCACCACGTGTCTGGGCCA--------------------------------------------------------	20	64	53	-	-	-	-	-
	----------------------------------------------------------TGGGCCTGACGTGGAGCT----------------------	18	55	62	-	-	-	-	-
	----------------------------------------------------------TGGGCCTGACGTGGAGCTGG--------------------	20	68	40	-	-	1	-	-
	--------------------------------------------------------CGTGGGCCTGACGTGGAGCT----------------------	20	49	44	-	-	-	-	-
	----------------------------------------------------------TGGGCCTGACGTGGAGCTG---------------------	19	42	25	-	-	-	-	-
	---------------------------------------------------------GTGGGCCTGACGTGGAGCTGG--------------------	21	38	18	-	-	-	-	-
	---------------------------------------------------------GTGGGCCTGACGTGGAGCTG---------------------	20	36	16	-	-	-	-	-
	----------------------AGCACCACGTGTCTGGGC----------------------------------------------------------	18	23	29	-	-	-	-	-
	--------------------------------------------------------CGTGGGCCTGACGTGGAG------------------------	18	19	23	-	-	-	-	-
	--------------------------------------------------------CGTGGGCCTGACGTGGAGCTG---------------------	21	13	20	2	-	-	-	-
	----------------------AGCACCACGTGTCTGGGCCACGT-----------------------------------------------------	23	15	18	-	-	-	-	-
rno-miR-770	----------------------AGCACCACGTGTCTGGGCCACG------------------------------------------------------	22	16	10	-	-	-	-	-
	--------------------------------------------------------CGTGGGCCTGACGTGGAGCTGG--------------------	22	8	4	-	-	-	-	-
	----------------------------------------------------------TGGGCCTGACGTGGAGCTGGG-------------------	21	6	6	-	-	-	-	-
	----------------------AGCACCACGTGTCTGGGCCACGTG----------------------------------------------------	24	2	-	-	-	-	-	-
	---------------------------------------------------------GTGGGCCTGACGTGGAGCTGGG-------------------	22	1	-	-	-	-	-	-
	----------------------------------------------------------TGGGCCTGACGTGGAGCTGGGG------------------	22	1	-	-	-	-	-	-
rat	------------CTGTGCCCCCAGCACCACGTGTCTGGGCCACGTGAGCAACGCCACGTGGGCCTGACGTGGAGCTGGGGCCGCAGGG----------
human	AGGAGCCACCTTCCGAGCCTCCAGTACCACGTGTCAGGGCCACATGAGCTGGGCCTCGTGGGCCTGATGTGGTGCTGGGGCCTCAGGGGTCTGCTCTT
mouse	------------------CCCCAGCACCACGTGTCTGGGCCACGTGAGCAACGCCACGTGGGCCTGACGTGGAGCTGGGG------------------
	* ** ****** *** * * ********* *****
	>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	ENSRNOT00000062137 ENSRNOG00000040384 rno-mir-770
rat	(((((.(((((((.((((((....((.(((((((.((...))))))))).))..)))))).))))))).)))))..	1.000 -52.20
human	((((((.(((((..(((.((((((((((((((....(((((.((((((......))))))))))).)))))))))))))).))).)))))..))))))	1.000 -56.70
mouse	(((((((.((((((....((.(((((((.((...))))))))).))..)))))).)))))))	1.000 -43.20

rat	chromosome:6:134141361:134141436:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000062137\|ENSRNOG00000040384 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000062137\|ENSRNOG00000040384 ## ENSRNOG00000040384\|miRNA\|rno-mir-770\|rno-mir-770 [Source:miRBase;Acc:MI0006165] ## {MIR: rno-mir-770}
human	chromosome:14:100388480:100388577:1	Same_strand\|Intronic_coding\|ENST00000398518\|ENSG00000214548\|protein_coding\|Full-length cDNA clone CS0DM001YI13 of Fetal liver of Homo sapiens (human) (HCG25025, isoform CRA_c) (Full-length cDNA clone CS0DM008YG24 of Fetal liver of Homo sapiens) [Source:UniProtKB/TrEMBL;Acc:Q86SH5] ## Same_strand\|Intronic_non-coding\|ENST00000398474\|ENSG00000186316\|protein_coding\|cDNA FLJ32960 fis, clone TESTI2008240 [Source:UniProtKB/TrEMBL;Acc:Q96LZ5] ## Same_strand\|Exonic_non-coding\|ENST00000390219\|ENSG00000211574\|miRNA\|hsa-mir-770 [Source:miRBase;Acc:MI0005118] ## {MIR: hsa-mir-770}
mouse	chromosome:12:110801916:110801977:1	Same_strand\|Intronic_non-coding\|ENSMUST00000021696\|ENSMUSG00000021268\|protein_coding\|maternally expressed 3 Gene [Source:MGI Symbol;Acc:MGI:1202886] ## Same_strand\|Exonic_non-coding\|ENSMUST00000103252\|ENSMUSG00000076451\|miRNA\|mmu-mir-770 [Source:miRBase;Acc:MI0004203] ## {MIR: mmu-mir-770}

rno-mir-136

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-136 5arm	10985.500	6546	89.500	21	59	86	31	22	23	45
rno-mir-136 3arm	1205	1042	7	6	7	13	9	5	1	15
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-136 5arm	0.365	0.286	0.005	0.001	0.003	0.007	0.002	0.001	0.002	0.003
rno-mir-136 3arm	0.040	0.045	0.000	0.000	0.000	0.001	0.001	0.000	0.000	0.001

sblock10445 (miRBase rno-mir-136) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-136	0.001	no	no	0.30/0.44	18/26/0.54	0.0 1.1	0.9 1.2	11271 1404	0 0	10 10	0 0	14 9	1 2	5arm 3arm	1 1	nd nd	0.18 0.14	3 3	20379	10	1	4

Clusters
Located in cluster 67: rno-mir-434, rno-mir-136

		reads	miRBase family seed
seed	-------------------------------CUCCAUU------------------------------------------------------------------------------	16091	miR-136
seed	-----------------------------GACUCCA--------------------------------------------------------------------------------	1417	novel
seed	-----------------------------------------------------------------AUCAUCG--------------------------------------------	780	miR-136*
seed	------------------------------------------------------------------UCAUCGU-------------------------------------------	535	novel
seed	-------------------------------------------------------------------CAUCGUC------------------------------------------	506	novel
seed	--------------------------------------------------------------------AUCGUCU-----------------------------------------	414	novel
seed	----------------------------GGACUCC---------------------------------------------------------------------------------	335	novel
seed	------------------------------ACUCCAU-------------------------------------------------------------------------------	131	miR-880
seed	--------------------------------UCCAUUU-----------------------------------------------------------------------------	91	novel
seed	---------------------------------------------------------------------UCGUCUC----------------------------------------	75	novel
seed	----------------------------------CAUUUGU---------------------------------------------------------------------------	3	novel
seed	---------------------------------CCAUUUG----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------------ACTCCATTTGTTTTGATGA-------------------------------------------------------------------	19	4596	2901	31	9	24	48	11	8	11	12
	------------------------------ACTCCATTTGTTTTGATGATGG----------------------------------------------------------------	22	2097	779	12	3	7	8	3	5	3	12
	------------------------------ACTCCATTTGTTTTGATGATG-----------------------------------------------------------------	21	1677	946	18	3	8	14	8	4	4	6
	------------------------------ACTCCATTTGTTTTGATGAT------------------------------------------------------------------	20	1139	847	22	5	12	8	9	1	2	9
	----------------------------GGACTCCATTTGTTTTGATGAT------------------------------------------------------------------	22	346	287	2	-	1	2	-	1	1	-
	------------------------------ACTCCATTTGTTTTGATG--------------------------------------------------------------------	18	351	223	1	-	3	6	-	-	-	1
	----------------------------GGACTCCATTTGTTTTGATGA-------------------------------------------------------------------	21	221	186	1	1	-	-	-	1	-	-
rno-miR-136*	----------------------------------------------------------------CATCATCGTCTCAAATGAGTCT------------------------------	22	197	160	-	-	2	1	3	-	1	5
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGTCT------------------------------	21	155	115	1	-	1	3	-	2	-	4
	------------------------------------------------------------------TCATCGTCTCAAATGAGTCTTC----------------------------	22	106	113	-	1	-	-	1	-	-	-
	----------------------------GGACTCCATTTGTTTTGA----------------------------------------------------------------------	18	109	83	-	-	2	-	-	-	-	-
	----------------------------------------------------------------CATCATCGTCTCAAATGAG---------------------------------	19	80	82	1	2	1	2	-	-	-	1
	-------------------------------------------------------------------CATCGTCTCAAATGAGTCTTC----------------------------	21	74	64	1	-	-	-	-	-	-	-
rno-miR-136	------------------------------ACTCCATTTGTTTTGATGATGGA---------------------------------------------------------------	23	100	36	1	-	-	-	-	-	-	-
	----------------------------------------------------------------CATCATCGTCTCAAATGA----------------------------------	18	73	58	2	1	-	-	-	-	-	-
	-------------------------------------------------------------------CATCGTCTCAAATGAGTCTTCA---------------------------	22	65	50	1	-	-	1	1	1	-	-
	---------------------------AGGACTCCATTTGTTTTGATGAT------------------------------------------------------------------	23	74	41	-	-	-	-	-	-	1	1
	----------------------------GGACTCCATTTGTTTTGAT---------------------------------------------------------------------	19	59	53	-	-	2	-	-	-	-	1
	-----------------------------------------------------------------ATCATCGTCTCAAATGAG---------------------------------	18	53	59	-	1	-	-	-	-	-	1
	------------------------------------------------------------------TCATCGTCTCAAATGAGTCT------------------------------	20	45	60	1	-	-	-	-	-	-	3
	------------------------------------------------------------------TCATCGTCTCAAATGAGTC-------------------------------	19	60	44	-	-	-	-	-	-	-	-
	---------------------------AGGACTCCATTTGTTTTGATGA-------------------------------------------------------------------	22	50	47	-	-	-	-	-	-	-	-
	----------------------------------------------------------------CATCATCGTCTCAAATGAGTC-------------------------------	21	41	34	-	-	2	2	1	-	-	-
	-------------------------------------------------------------------CATCGTCTCAAATGAGTC-------------------------------	18	43	31	-	-	-	1	-	-	-	-
	-------------------------------------------------------------------CATCGTCTCAAATGAGTCT------------------------------	19	41	26	-	-	-	2	-	-	-	-
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGTC-------------------------------	20	27	39	-	-	-	-	1	-	-	-
	-----------------------------GACTCCATTTGTTTTGATGAT------------------------------------------------------------------	21	25	27	1	-	-	-	-	1	-	-
	--------------------------------------------------------------------ATCGTCTCAAATGAGTCTTC----------------------------	20	27	20	-	-	-	-	1	1	-	1
	---------------------------AGGACTCCATTTGTTTTG-----------------------------------------------------------------------	18	24	26	-	-	-	-	-	-	-	-
	----------------------------GGACTCCATTTGTTTTGATG--------------------------------------------------------------------	20	28	19	-	-	1	-	-	-	-	-
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGTCTTC----------------------------	23	28	19	-	-	-	1	-	-	-	-
	---------------------------AGGACTCCATTTGTTTTGA----------------------------------------------------------------------	19	20	15	-	-	-	-	-	-	-	-
	-----------------------------GACTCCATTTGTTTTGATGA-------------------------------------------------------------------	20	16	16	-	-	-	-	-	-	-	1
	------------------------------ACTCCATTTGTTTTGATGATGGAT--------------------------------------------------------------	24	24	7	-	-	-	-	-	1	-	-
	------------------------------------------------------------------TCATCGTCTCAAATGAGTCTTCA---------------------------	23	15	13	-	-	-	-	-	-	-	-
	-------------------------------CTCCATTTGTTTTGATGA-------------------------------------------------------------------	18	13	12	1	-	-	-	-	-	-	-
	------------------------------------------------------------------TCATCGTCTCAAATGAGTCTT-----------------------------	21	16	9	-	-	-	-	-	-	-	-
	----------------------------------------------------------------CATCATCGTCTCAAATGAGT--------------------------------	20	13	9	-	1	-	-	1	-	-	-
	-------------------------------CTCCATTTGTTTTGATGATG-----------------------------------------------------------------	20	17	6	-	-	-	-	-	-	1	-
	-------------------------------CTCCATTTGTTTTGATGATGG----------------------------------------------------------------	21	16	5	-	-	-	-	-	-	-	1
	---------------------------AGGACTCCATTTGTTTTGAT---------------------------------------------------------------------	20	10	9	-	-	-	-	-	-	-	-
	------------------------------------------------------------------TCATCGTCTCAAATGAGT--------------------------------	18	12	7	-	-	-	-	-	-	-	-
	-----------------------------GACTCCATTTGTTTTGAT---------------------------------------------------------------------	18	6	10	-	-	-	-	-	-	-	1
	-------------------------------CTCCATTTGTTTTGATGAT------------------------------------------------------------------	19	11	6	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGT--------------------------------	19	13	2	-	-	-	-	-	-	-	-
	---------------------------AGGACTCCATTTGTTTTGATG--------------------------------------------------------------------	21	7	8	-	-	-	-	-	-	-	-
	------------------------------ACTCCATTTGTTTTGATGATGGATT-------------------------------------------------------------	25	10	4	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------ATCGTCTCAAATGAGTCTTCA---------------------------	21	6	7	-	-	-	-	-	1	-	-
	-------------------------------------------------------------------CATCGTCTCAAATGAGTCTT-----------------------------	20	5	6	-	-	1	-	-	-	-	-
	-----------------------------GACTCCATTTGTTTTGATGATGG----------------------------------------------------------------	23	7	4	-	-	-	-	-	-	-	-
	-----------------------------GACTCCATTTGTTTTGATGATG-----------------------------------------------------------------	22	9	2	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGTCTT-----------------------------	22	4	5	-	-	-	-	-	-	-	-
	----------------------------GGACTCCATTTGTTTTGATGATG-----------------------------------------------------------------	23	3	5	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------ATCGTCTCAAATGAGTCT------------------------------	18	4	4	-	-	-	-	-	-	-	-
	-----------------------------GACTCCATTTGTTTTGATG--------------------------------------------------------------------	19	2	3	-	-	-	-	-	-	-	-
	----------------------------------------------------------------CATCATCGTCTCAAATGAGTCTTC----------------------------	24	2	2	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------ATCGTCTCAAATGAGTCTT-----------------------------	19	-	3	-	-	-	-	-	-	-	-
	----------------------------GGACTCCATTTGTTTTGATGATGG----------------------------------------------------------------	24	1	1	-	-	-	-	-	-	-	-
	-------------------------------CTCCATTTGTTTTGATGATGGA---------------------------------------------------------------	22	1	1	-	-	-	-	-	-	-	-
	---------------------------------CCATTTGTTTTGATGATGG----------------------------------------------------------------	19	1	1	-	-	-	-	-	-	-	-
	---------------------------AGGACTCCATTTGTTTTGATGATG-----------------------------------------------------------------	24	1	1	-	-	-	-	-	-	-	-
	------------------------------ACTCCATTTGTTTTGATGATGGATTC------------------------------------------------------------	26	1	-	-	-	-	-	-	-	-	-
	---------------------------------CCATTTGTTTTGATGATGGA---------------------------------------------------------------	20	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------ATCATCGTCTCAAATGAGTCTTCA---------------------------	24	-	1	-	-	-	-	-	-	-	-
	--------------------------------TCCATTTGTTTTGATGATGG----------------------------------------------------------------	20	1	-	-	-	-	-	-	-	-	-
rat	----------------TGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCT------------------
human	CCTCGGTGGTGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTATGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATTTCGTCGGATGG-
mouse	-TTCAACGGTGTTGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTAAGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATGTCGTCGGTTGGA
	***************************************** ************************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000054601 ENSRNOG00000036493 rno-mir-136
rat	.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).	1.000 -45.80
human	..(((..((.....(((((((((((.(((((((.((((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))...))..)))....	0.999 -52.40
mouse	((((((((((...(((((((((((.(((((((.((((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))....))))).)))))	0.999 -53.20

rat	chromosome:6:134186977:134187058:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000054601\|ENSRNOG00000036493 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000054601\|ENSRNOG00000036493 ## ENSRNOG00000036493\|miRNA\|rno-mir-136\|rno-mir-136 [Source:miRBase;Acc:MI0000909] ## {MIR: rno-mir-136}
human	chromosome:14:100420776:100420890:1	Same_strand\|Boundary_non-coding\|ENST00000385207\|ENSG00000207942\|miRNA\|hsa-mir-136 [Source:miRBase;Acc:MI0000475] ## {MIR: hsa-mir-136}
mouse	chromosome:12:110833512:110833626:1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000118502\|ENSMUSG00000081425\|protein_coding\|Retrotransposon-like protein 1 (Retrotransposon-derived protein PEG11)(Paternally expressed gene 11 protein)(Mammalian retrotransposon derived protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q7M732] ## Same_strand\|Boundary_non-coding\|ENSMUST00000093621\|ENSMUSG00000070129\|miRNA\|mmu-mir-136 [Source:miRBase;Acc:MI0000162] ## {MIR: mmu-mir-136}

rno-mir-376c

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376c 5arm	67.333	50.667	1.333	0	0	1	0	0.333	0.333	1
rno-mir-376c 3arm	739	458	40	9	24	15	12	13	25	51
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376c 5arm	0.002	0.002	0.000	0	0	0.000	0	0.000	0.000	0.000
rno-mir-376c 3arm	0.025	0.020	0.002	0.001	0.001	0.001	0.001	0.001	0.002	0.003

sblock10502 (miRBase rno-mir-376c) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-376c	0.001	no	no	0.28/0.42	18/23/0.53	0.0 0.0	0.0 0.8	160 1077	0 0	7 10	0 0	14 12	4 2	5arm 3arm	3 3	nd nd	0.17 0.14	2 2	1630	10	-2	2

Clusters
Located in cluster 72: rno-mir-376c, rno-mir-376b, rno-mir-376a, rno-mir-300

		reads	miRBase family seed
seed	------------------------------------------------------------------------ACAUAGA-------------------------------------------	1385	miR-376c
seed	-----------------------------------UGGAUAU--------------------------------------------------------------------------------	215	miR-376b
seed	----------------------------------GUGGAUA---------------------------------------------------------------------------------	16	novel
seed	------------------------------------GGAUAUU-------------------------------------------------------------------------------	8	novel
seed	---------------------------------GGUGGAU----------------------------------------------------------------------------------	3	novel
seed	--------------------------------AGGUGGA-----------------------------------------------------------------------------------	2	novel
seed	-------------------------------------------------------------------------CAUAGAG------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-376c	-----------------------------------------------------------------------AACATAGAGGAAATTTCACGT------------------------------	21	405	231	20	3	11	2	9	7	12	29
	-----------------------------------------------------------------------AACATAGAGGAAATTTCAC--------------------------------	19	262	179	16	6	10	9	3	6	10	17
	----------------------------------GTGGATATTCCTTCTATG----------------------------------------------------------------------	18	92	68	1	-	-	-	-	1	1	-
	-----------------------------------------------------------------------AACATAGAGGAAATTTCACG-------------------------------	20	42	35	2	-	3	3	-	-	3	2
	-----------------------------------------------------------------------AACATAGAGGAAATTTCA---------------------------------	18	18	9	1	-	-	1	-	-	-	1
	----------------------------------GTGGATATTCCTTCTATGT---------------------------------------------------------------------	19	11	9	1	-	-	1	-	-	-	1
	-----------------------------------------------------------------------AACATAGAGGAAATTTCACGTT-----------------------------	22	11	3	-	-	-	-	-	-	-	2
	----------------------------------GTGGATATTCCTTCTATGTT--------------------------------------------------------------------	20	6	6	-	-	-	-	-	-	-	-
	----------------------------------GTGGATATTCCTTCTATGTTT-------------------------------------------------------------------	21	7	4	-	-	-	-	-	-	-	-
	---------------------------------GGTGGATATTCCTTCTATG----------------------------------------------------------------------	19	5	5	-	-	-	-	-	-	-	-
	----------------------------------GTGGATATTCCTTCTATGTTTA------------------------------------------------------------------	22	5	1	-	-	-	-	-	-	-	-
	---------------------------------GGTGGATATTCCTTCTAT-----------------------------------------------------------------------	18	3	2	-	-	-	-	-	-	-	-
	-----------------------------------TGGATATTCCTTCTATGT---------------------------------------------------------------------	18	1	3	-	-	-	-	-	-	-	-
	-----------------------------------TGGATATTCCTTCTATGTT--------------------------------------------------------------------	19	2	1	-	-	-	-	-	-	-	-
	--------------------------------AGGTGGATATTCCTTCTA------------------------------------------------------------------------	18	1	2	-	-	-	-	-	-	-	-
	-------------------------------AAGGTGGATATTCCTTCTA------------------------------------------------------------------------	19	2	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------------AACATAGAGGAAATTTCACGTTT----------------------------	23	-	1	1	-	-	-	-	-	-	-
	-----------------------------------TGGATATTCCTTCTATGTTTA------------------------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
	---------------------------------GGTGGATATTCCTTCTATGTTTA------------------------------------------------------------------	23	-	1	-	-	-	-	-	-	-	-
	------------------------------------------------------------------------ACATAGAGGAAATTTCACG-------------------------------	19	1	-	-	-	-	-	-	-	-	-
rat	--------------------TTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGGTATTTATGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAA------------------
human	TTCCAGGACTCAATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGCTTGGAA-----
mouse	-TTCAGGACTAAATC---TTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGCTTTTTGTGATTAAACATAGAGGAAATTTCACGTTTTCAGTGTCAAATGCTGCTGGGTAATGGG
	************************************** * * **************** ******** **
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053593 ENSRNOG00000035470 rno-mir-376c
rat	.((..(((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))..)).	1.000 -26.72
human	.((((((...((.......(((((((((.((((.(((((..((((.((((((((((.............))))))))))))))..))))).)))).)))))))))))...)))))).	0.808 -39.53
mouse	.(((..(((..... .((((..(((.((((.(((((..((((.((((((((((.((.....))...))))))))))))))..))))).)))).)))..))))........)))..))).	0.976 -33.64

rat	chromosome:6:134403524:134403607:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053593\|ENSRNOG00000035470 ## ENSRNOG00000035470\|miRNA\|rno-mir-376c\|rno-mir-376c [Source:miRBase;Acc:MI0003543] ## {MIR: rno-mir-376c}
human	chromosome:14:100575751:100575867:1	intergenic ## {Repeats: trf 0 class=trf} ## {MIR: hsa-mir-376c}
mouse	chromosome:12:110960913:110961030:1	intergenic ## {MIR: mmu-mir-376c}

rno-mir-300

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-300 5arm	42	30	0	0	0	0	0	0	2	1
rno-mir-300 3arm	692	493	3	0	7	15	4	1	3	23
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-300 5arm	0.001	0.001	0	0	0	0	0	0	0.000	0.000
rno-mir-300 3arm	0.023	0.022	0.000	0	0.000	0.001	0.000	0.000	0.000	0.002

sblock10505 (miRBase rno-mir-300) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-300	0.001	no	no	0.35/0.59	18/25/0.66	0.4 0.0	3.5 1.6	59 842	0 0	4 9	0 0	5 7	7 8	5arm 3arm	1 1	nd nd	0.12 0.09	2 1	1316	9	1	-2

Clusters
Located in cluster 72: rno-mir-376c, rno-mir-376b, rno-mir-376a, rno-mir-300

		reads	miRBase family seed
seed	----------------------------------------------------------------------AUGCAAG----------------------------------	968	miR-300
seed	------------------------------------------------------------------------GCAAGGG--------------------------------	114	novel
seed	-----------------------------------------------------------------------UGCAAGG---------------------------------	100	novel
seed	--------------------------------------------------------------------------AAGGGCA------------------------------	56	novel
seed	--------------------------GAAGAGA------------------------------------------------------------------------------	37	novel
seed	-------------------------UGAAGAG-------------------------------------------------------------------------------	22	miR-300
seed	----------------------------AGAGAGG----------------------------------------------------------------------------	8	novel
seed	---------------------------AAGAGAG-----------------------------------------------------------------------------	5	novel
seed	-----------------------------GAGAGGU---------------------------------------------------------------------------	3	novel
seed	-------------------------------------------------------------------------CAAGGGC-------------------------------	2	novel
seed	---------------------------------------------------------------------UAUGCAA-----------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-300-3p	---------------------------------------------------------------------TATGCAAGGGCAAGCTCTCTTC--------------------	22	197	119	1	1	4	1	-	-	6
	---------------------------------------------------------------------TATGCAAGGGCAAGCTCTC-----------------------	19	160	118	1	2	7	1	-	2	11
	---------------------------------------------------------------------TATGCAAGGGCAAGCTCTCT----------------------	20	132	116	-	2	3	1	1	1	3
	---------------------------------------------------------------------TATGCAAGGGCAAGCTCTCTT---------------------	21	25	23	-	1	-	1	-	-	1
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTTCGA------------------	22	36	14	-	-	-	-	-	-	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTTC--------------------	20	25	7	-	-	-	-	-	-	1
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTCTTCGA------------------	23	14	17	-	-	-	-	-	-	-
	---------------------------------------------------------------------TATGCAAGGGCAAGCTCT------------------------	18	14	12	-	-	-	-	-	-	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCT----------------------	18	12	13	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTC-----------------------	18	14	10	-	1	-	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTCGA------------------	20	12	9	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTCT----------------------	19	12	8	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTCTTC--------------------	21	9	6	1	-	-	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTCGAG-----------------	21	7	6	-	-	1	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTC--------------------	18	6	3	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTT--------------------------------------------------------------------	18	5	2	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTGTGT---------------------------------------------------------------	23	4	3	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTCTTCG-------------------	22	2	4	-	-	-	-	-	-	-
	------------------------TTGAAGAGAGGTTATCCTT--------------------------------------------------------------------	19	4	2	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTGTGTGT-------------------------------------------------------------	25	2	4	-	-	-	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTCGAGG----------------	22	2	3	-	-	-	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTCGAGGA---------------	23	5	-	-	-	-	-	-	-	-
	------------------------TTGAAGAGAGGTTATCCT---------------------------------------------------------------------	18	4	1	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTGTGTG--------------------------------------------------------------	24	2	3	-	-	-	-	-	-	-
	------------------------TTGAAGAGAGGTTATCCTTTGTGT---------------------------------------------------------------	24	4	-	-	-	-	-	-	-	-
	------------------------TTGAAGAGAGGTTATCCTTTGTG----------------------------------------------------------------	23	4	-	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTGTG----------------------------------------------------------------	22	2	2	-	-	-	-	-	-	-
	--------------------------GAAGAGAGGTTATCCTTTGTGTGT-------------------------------------------------------------	24	2	1	-	-	-	-	-	-	1
	-------------------------TGAAGAGAGGTTATCCTTT-------------------------------------------------------------------	19	1	1	-	-	-	-	-	2	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTTCG-------------------	21	1	2	-	-	-	-	-	-	-
	---------------------------AAGAGAGGTTATCCTTTGTGT---------------------------------------------------------------	21	-	2	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATGCAAGGGCAAGCTCTCTT---------------------	20	2	-	-	-	-	-	-	-	-
	------------------------------------------------------------------------GCAAGGGCAAGCTCTCTTC--------------------	19	1	1	-	-	-	-	-	-	-
	----------------------------AGAGAGGTTATCCTTTGTGTGT-------------------------------------------------------------	22	1	1	-	-	-	-	-	-	-
	-------------------------------------------------------------------------CAAGGGCAAGCTCTCTTCG-------------------	19	2	-	-	-	-	-	-	-	-
	---------------------------AAGAGAGGTTATCCTTTG------------------------------------------------------------------	18	1	1	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTGT-----------------------------------------------------------------	21	-	2	-	-	-	-	-	-	-
	-------------------------TGAAGAGAGGTTATCCTTTG------------------------------------------------------------------	20	2	-	-	-	-	-	-	-	-
rno-miR-300-5p	------------------------TTGAAGAGAGGTTATCCTTTGT-----------------------------------------------------------------	22	2	-	-	-	-	-	-	-	-
	---------------------------AAGAGAGGTTATCCTTTGTGTGT-------------------------------------------------------------	23	1	1	-	-	-	-	-	-	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTT---------------------	19	-	1	-	-	-	-	-	-	-
	------------------------TTGAAGAGAGGTTATCCTTT-------------------------------------------------------------------	20	-	1	-	-	-	-	-	-	-
	--------------------------GAAGAGAGGTTATCCTTTGTG----------------------------------------------------------------	21	1	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------ATATGCAAGGGCAAGCTCTCTTC--------------------	23	1	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTTCGAG-----------------	23	-	-	-	-	-	-	-	-	1
	---------------------------------------------------------------------TATGCAAGGGCAAGCTCTCTTCG-------------------	23	-	1	-	-	-	-	-	-	-
	---------------------------AAGAGAGGTTATCCTTTGTG----------------------------------------------------------------	20	-	1	-	-	-	-	-	-	-
	----------------------------AGAGAGGTTATCCTTTGTGTG--------------------------------------------------------------	21	-	1	-	-	-	-	-	-	-
	---------------------------AAGAGAGGTTATCCTTTGT-----------------------------------------------------------------	19	-	1	-	-	-	-	-	-	-
	-----------------------------------------------------------------------TGCAAGGGCAAGCTCTCTTCGAGGA---------------	25	1	-	-	-	-	-	-	-	-
rat	-------------------GCTACTTGAAGAGAGGTTATCCTTTGTGTGTTTGCTTTACGCGAAATGAATATGCAAGGGCAAGCTCTCTTCGAGGAGC-------------
mouse	CCAGCGCTCCTTATCGTTTGCTACTTGAAGAGAGGTTATCCTTTGTGTGTTTGCTTTACGCGAAATGAATATGCAAGGGCAAGCTCTCTTCGAGGAGCAAATGCTGCCTGG
	*******************************************************************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053757 ENSRNOG00000035634 rno-mir-300
rat	(((.(((((((((((.((..(((((((((((((..(((....)))..))))))))))))).)).))))))))))).)))	1.000 -35.50
mouse	((((.((.......((((((((.(((((((((((.((..(((((((((((((..(((....)))..))))))))))))).)).))))))))))).))))))))..))))))	1.000 -48.40

rat	chromosome:6:134405237:134405315:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053757\|ENSRNOG00000035634 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000053757\|ENSRNOG00000035634 ## ENSRNOG00000035634\|miRNA\|rno-mir-300\|rno-mir-300 [Source:miRBase;Acc:MI0000971] ## {MIR: rno-mir-300}
mouse	chromosome:12:110962504:110962614:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083485\|ENSMUSG00000065419\|miRNA\|mmu-mir-300 [Source:miRBase;Acc:MI0000400] ## {MIR: mmu-mir-300}

rno-mir-485

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-485 5arm	256	235	1	0	0	0	0	0	0	2
rno-mir-485 3arm	937	825	1	0	6	5	8	8	10	17
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-485 5arm	0.009	0.010	0.000	0	0	0	0	0	0	0.000
rno-mir-485 3arm	0.031	0.036	0.000	0	0.000	0.000	0.001	0.000	0.001	0.001

sblock10514 (miRBase rno-mir-485) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-485	0.001	no	no	0.33/0.61	18/24/0.69	0.0 1.2 0.0 0.0	1.1 3.2 0.0 0.0	313 4 3 842	0 0 0 0	4 2 2 9	0 0 0 0	11 27 21 7	0 -23 -6 5	5arm_loop 3arm_loop 3arm_loop 3arm	1 1 1 1	nd nd nd nd	0.16 0.50 0.32 0.18	2 11 5 2	2311	9	6	4

Clusters
Located in cluster 74: rno-mir-382, rno-mir-134, mmu-mir-668, rno-mir-485

		reads	miRBase family seed
seed	----------------------------------------------------------------------AUACACG---------------------------------------	1344	novel
seed	-------------------------------GAGGCUG------------------------------------------------------------------------------	446	miR-485
seed	--------------------------------------------------------------------UCAUACA-----------------------------------------	295	novel
seed	-------------------------------------------------------------------GUCAUAC------------------------------------------	119	novel
seed	---------------------------------------------------------------------CAUACAC----------------------------------------	34	novel
seed	---------------------------------GGCUGGC----------------------------------------------------------------------------	33	novel
seed	-----------------------------------------------------------------------UACACGG--------------------------------------	19	novel
seed	-----------------------------GAGAGGC--------------------------------------------------------------------------------	12	novel
seed	-----------------------------------------------------------CUAAACG--------------------------------------------------	3	novel
seed	---------------------------------------------------CGAUUCA----------------------------------------------------------	2	novel
seed	-------------------------------------------------------------------------CACGGCU------------------------------------	2	novel
seed	------------------------------------------------------UUCAUCU-------------------------------------------------------	1	novel
seed	-----------------------------------------------------AUUCAUC--------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------------------------------------------------------------CATACACGGCTCTCCTCTCTTC-------------------------	22	453	389	-	2	2	3	1	4	6
	---------------------------------------------------------------------CATACACGGCTCTCCTCTC----------------------------	19	118	113	-	1	-	-	-	-	-
	------------------------------AGAGGCTGGCCGTGATGAA-------------------------------------------------------------------	19	100	99	-	-	-	-	-	-	1
	---------------------------------------------------------------------CATACACGGCTCTCCTCTCT---------------------------	20	76	90	-	-	-	2	3	3	2
	-------------------------------------------------------------------GTCATACACGGCTCTCCTCTCT---------------------------	22	62	31	-	-	-	2	2	-	4
	------------------------------AGAGGCTGGCCGTGATGAATTCG---------------------------------------------------------------	23	35	44	-	-	-	-	-	-	1
	-------------------------------------------------------------------GTCATACACGGCTCTCCTCTC----------------------------	21	28	39	-	-	-	-	1	-	1
	-------------------------------------------------------------------GTCATACACGGCTCTCCTC------------------------------	19	35	20	-	2	2	-	-	1	1
	------------------------------AGAGGCTGGCCGTGATGA--------------------------------------------------------------------	18	35	25	-	-	-	-	-	-	-
rno-miR-485	------------------------------AGAGGCTGGCCGTGATGAATTC----------------------------------------------------------------	22	20	26	1	-	-	-	-	-	-
	-------------------------------------------------------------------GTCATACACGGCTCTCCT-------------------------------	18	26	19	-	-	-	-	-	-	1
	------------------------------AGAGGCTGGCCGTGATGAAT------------------------------------------------------------------	20	19	22	-	-	-	-	-	-	-
	---------------------------------------------------------------------CATACACGGCTCTCCTCT-----------------------------	18	22	17	-	-	-	-	-	-	-
	------------------------------------------------------------------AGTCATACACGGCTCTCCTCTC----------------------------	22	19	12	-	-	-	-	-	-	2
	------------------------------------------------------------------AGTCATACACGGCTCTCC--------------------------------	18	15	10	-	-	-	1	-	-	-
	---------------------------------------------------------------------CATACACGGCTCTCCTCTCTT--------------------------	21	16	8	-	-	-	-	-	-	-
	------------------------------------------------------------------AGTCATACACGGCTCTCCTCTCT---------------------------	23	8	14	-	1	-	-	-	-	-
	--------------------------------------------------------------------TCATACACGGCTCTCCTCTCTTC-------------------------	23	12	7	-	-	1	-	-	1	-
	------------------------------------------------------------------AGTCATACACGGCTCTCCTC------------------------------	20	11	7	-	-	-	-	-	-	-
	------------------------------------------------------------------AGTCATACACGGCTCTCCT-------------------------------	19	6	10	-	-	-	-	1	-	-
	-------------------------------------------------------------------GTCATACACGGCTCTCCTCT-----------------------------	20	6	8	1	-	-	-	-	-	-
	---------------------------------------------------------------------CATACACGGCTCTCCTCTCTTCT------------------------	23	3	9	-	-	-	-	-	1	-
	------------------------------AGAGGCTGGCCGTGATGAATTCGA--------------------------------------------------------------	24	11	2	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATTCGA--------------------------------------------------------------	22	6	4	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATTC----------------------------------------------------------------	20	8	-	-	-	-	-	-	-	-
	----------------------------AGAGAGGCTGGCCGTGATGA--------------------------------------------------------------------	20	7	-	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATACACGGCTCTCCTCTCT---------------------------	19	2	5	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATACACGGCTCTCCTCTCTTC-------------------------	21	2	5	-	-	-	-	-	-	-
	--------------------------------------------------------------------TCATACACGGCTCTCCTCTCT---------------------------	21	3	3	-	-	-	-	-	-	-
	------------------------------AGAGGCTGGCCGTGATGAATT-----------------------------------------------------------------	21	1	4	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAAT------------------------------------------------------------------	18	3	2	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATTCGAT-------------------------------------------------------------	23	2	2	-	-	-	-	-	-	-
	-------------------------------------------------------------------GTCATACACGGCTCTCCTCTCTTC-------------------------	24	3	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------TCATACACGGCTCTCCTCTC----------------------------	20	2	1	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATACACGGCTCTCCTCTC----------------------------	18	1	2	-	-	-	-	-	-	-
	----------------------------------------------------------TCTAAACGAGTCATACACG---------------------------------------	19	2	1	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATTCG---------------------------------------------------------------	21	2	1	-	-	-	-	-	-	-
	--------------------------------------------------------------------TCATACACGGCTCTCCTC------------------------------	18	1	1	-	-	-	-	-	-	-
	----------------------------AGAGAGGCTGGCCGTGATGAA-------------------------------------------------------------------	21	1	1	-	-	-	-	-	-	-
	--------------------------------------------------------------------TCATACACGGCTCTCCTCT-----------------------------	19	1	1	-	-	-	-	-	-	-
	------------------------------------------------------------------AGTCATACACGGCTCTCCTCT-----------------------------	21	2	-	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATT-----------------------------------------------------------------	19	2	-	-	-	-	-	-	-	-
	------------------------------------------------------------------------ACACGGCTCTCCTCTCTTC-------------------------	19	2	-	-	-	-	-	-	-	-
	----------------------------AGAGAGGCTGGCCGTGATGAAT------------------------------------------------------------------	22	2	-	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATACACGGCTCTCCTCTCTT--------------------------	20	-	1	-	-	-	-	-	-	-
	----------------------------------------------------GATTCATCTAAACGAGTCATACAC----------------------------------------	24	1	-	-	-	-	-	-	-	-
	-----------------------------------------------------ATTCATCTAAACGAGTCA---------------------------------------------	18	-	1	-	-	-	-	-	-	-
	--------------------------------AGGCTGGCCGTGATGAATTCGATT------------------------------------------------------------	24	1	-	-	-	-	-	-	-	-
	----------------------------AGAGAGGCTGGCCGTGAT----------------------------------------------------------------------	18	-	1	-	-	-	-	-	-	-
	--------------------------------------------------TCGATTCATCTAAACGAGTC----------------------------------------------	20	-	1	-	-	-	-	-	-	-
	----------------------------------------------------------------------ATACACGGCTCTCCTCTCTTCT------------------------	22	-	1	-	-	-	-	-	-	-
	--------------------------------------------------TCGATTCATCTAAACGAG------------------------------------------------	18	-	1	-	-	-	-	-	-	-
rat	-------------------GATACTTGGAGAGAGGCTGGCCGTGATGAATTCGATTCATCTAAACGAGTCATACACGGCTCTCCTCTCTTCTAGTGTC------------------
human	CTCACCAGTGTTCATGTGTGGTACTTGGAGAGAGGCTGGCCGTGATGAATTCGATTCATCAAAGCGAGTCATACACGGCTCTCCTCTCTTTTAGTGTCAAATTCTGCCTCGGAGGG
mouse	--------------------------GGAGAGAGGCTGGCCGTGATGAATTCGATTCATCTAAACGAGTCATACACGGCTCTCCTCTCTTC-------------------------
	******************************** **************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000054372 ENSRNOG00000036249 rno-mir-485
rat	((((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).))))))	1.000 -40.80
human	(((.((((.((.......((..(((..((((((((..((((((((((.(((((...........)))))))).)))))))..))))))))..)))..))......)))).)).)))	0.989 -45.22
mouse	(((((((((..((((((((((.(((((...........)))))))).)))))))..)))))))))	1.000 -32.80

rat	chromosome:6:134416384:134416462:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000054372\|ENSRNOG00000036249 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000054372\|ENSRNOG00000036249 ## ENSRNOG00000036249\|miRNA\|rno-mir-485\|rno-mir-485 [Source:miRBase;Acc:MI0003549] ## {MIR: rno-mir-485}
human	chromosome:14:100591487:100591602:1	Same_strand\|Boundary_non-coding\|ENST00000385292\|ENSG00000208027\|miRNA\|hsa-mir-485 [Source:miRBase;Acc:MI0002469] ## {MIR: hsa-mir-485}
mouse	chromosome:12:110973089:110973207:1	Same_strand\|Boundary_non-coding\|ENSMUST00000093620\|ENSMUSG00000070128\|miRNA\|mmu-mir-485 [Source:miRBase;Acc:MI0003492] ## {Repeats: trf 0 class=trf} ## {MIR: mmu-mir-485}

rno-mir-377

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-377 5arm	4	11	0	0	0	0	0	0	0	1
rno-mir-377 3arm	28.500	16.500	0	0	1	3	0	0	1	2
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-377 5arm	0.000	0.000	0	0	0	0	0	0	0	0.000
rno-mir-377 3arm	0.001	0.001	0	0	0.000	0.000	0	0	0.000	0.000

sblock10517 (miRBase rno-mir-377) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-377	0.001	no	no	0.35/0.56	18/23/0.57	0.0 0.6	1.7 1.6	11 29	0 0	3 6	0 0	7 5	2 2	5arm 3arm	1 1	nd nd	0.09 0.10	1 1	69	6	-1	-3

		reads	miRBase family seed
seed	--------------------------------------------------------------GAAUCAC----------------------------------------	32	novel
seed	-----------------------------------------------------------------UCACACA-------------------------------------	18	miR-377
seed	---------------------------GAGGUUG---------------------------------------------------------------------------	12	miR-672
seed	-----------------------------GGUUGCC-------------------------------------------------------------------------	4	novel
seed	----------------------------------------------------------------AUCACAC--------------------------------------	3	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T3S2	T5S1	T5S2
	-------------------------------------------------------------TGAATCACACAAAGGCAAC-----------------------------	19	7	6	-	1	-	1
	-------------------------------------------------------------TGAATCACACAAAGGCAACT----------------------------	20	7	3	-	1	-	-
rno-miR-377	----------------------------------------------------------------ATCACACAAAGGCAACTTTTGG-----------------------	22	6	2	-	-	-	-
	----------------------------------------------------------------ATCACACAAAGGCAACTT---------------------------	18	2	2	1	-	-	-
	--------------------------AGAGGTTGCCCTTGGTGAA----------------------------------------------------------------	19	2	3	-	-	-	-
	--------------------------AGAGGTTGCCCTTGGTGAATTC-------------------------------------------------------------	22	-	4	-	-	-	-
	-------------------------------------------------------------TGAATCACACAAAGGCAACTT---------------------------	21	2	1	-	-	-	-
	----------------------------AGGTTGCCCTTGGTGAATTC-------------------------------------------------------------	20	1	1	-	-	-	1
	-------------------------------------------------------------TGAATCACACAAAGGCAACTTTT-------------------------	23	2	-	-	-	-	1
	---------------------------------------------------------------AATCACACAAAGGCAACT----------------------------	18	1	1	-	-	-	-
	--------------------------AGAGGTTGCCCTTGGTGAAT---------------------------------------------------------------	20	-	2	-	-	-	-
	----------------------------------------------------------------ATCACACAAAGGCAACTTTTG------------------------	21	-	-	-	1	1	-
	----------------------------AGGTTGCCCTTGGTGAATT--------------------------------------------------------------	19	1	-	-	-	-	-
	----------------------------------------------------------------ATCACACAAAGGCAACTTTTGGT----------------------	23	-	1	-	-	-	-
	----------------------------------------------------------------ATCACACAAAGGCAACTTTT-------------------------	20	-	1	-	-	-	-
	----------------------------------------------------------------ATCACACAAAGGCAACTTT--------------------------	19	1	-	-	-	-	-
	---------------------------------------------------------------AATCACACAAAGGCAACTTTTGG-----------------------	23	1	-	-	-	-	-
	--------------------------AGAGGTTGCCCTTGGTGA-----------------------------------------------------------------	18	-	1	-	-	-	-
rat	-------------------CTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGGTTGAG------------------
human	CCCGTGCTGATGTTTGACCCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTTATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAATCCTGCTTGGG
mouse	CCTGTGCTGACGTTTGATTCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAAGCCTGCTTGGG
	*********************************** ************************ ***
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053733 ENSRNOG00000035610 rno-mir-377
rat	((..(.(((((((((((.(((((((.(((((.........).)))))))).))).))))))))))).)..))	1.000 -29.00
human	((((.((....((((((..((..(((((((((((((.((((((.((((((.........)).))))))).))).)))))))))))))..))..))))))...)).))))	1.000 -45.80
mouse	((((.((.....((((((.((..(((((((((((((.((((((.((((((.........)).))))))).))).)))))))))))))..)).))))))....)).))))	0.992 -41.90

rat	chromosome:6:134421775:134421846:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000053733\|ENSRNOG00000035610 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053733\|ENSRNOG00000035610 ## ENSRNOG00000035610\|miRNA\|rno-mir-377\|rno-mir-377 [Source:miRBase;Acc:MI0003487] ## {MIR: rno-mir-377}
human	chromosome:14:100598120:100598228:1	Same_strand\|Boundary_non-coding\|ENST00000362145\|ENSG00000199015\|miRNA\|hsa-mir-377 [Source:miRBase;Acc:MI0000785] ## {MIR: hsa-mir-377}
mouse	chromosome:12:110978699:110978807:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083504\|ENSMUSG00000065438\|miRNA\|mmu-mir-377 [Source:miRBase;Acc:MI0000794] ## {MIR: mmu-mir-377}

rno-mir-153

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-153 5arm	407	375	1	2	0	1	1	0	1	1
rno-mir-153 3arm	1661	1335	2	2	1	4	4	2	3	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-153 5arm	0.014	0.016	0.000	0.000	0	0.000	0.000	0	0.000	0.000
rno-mir-153 3arm	0.055	0.058	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

sblock10542 (miRBase rno-mir-153) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-153	0.001	no	no	0.32/0.41	18/24/0.50	0.0 0.0	2.4 1.0	749 2391	0 0	8 10	0 0	13 15	3 6	5arm 3arm	1 1	nd nd	0.09 0.11	2 2	3804	10	2	-1

		reads	miRBase family seed
seed	-------------------------------------------------------------------------UGCAUAG------------------------------------------------	2926	miR-153
seed	----------------------------------UCAUUUU---------------------------------------------------------------------------------------	758	novel
seed	--------------------------------------------------------------------------GCAUAGU-----------------------------------------------	88	novel
seed	-----------------------------------CAUUUUU--------------------------------------------------------------------------------------	31	novel
seed	----------------------------------------------------------------------------AUAGUCA---------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------------------------------------------------------TTGCATAGTCACAAAAGT--------------------------------------	18	506	436	1	1	-	-	1	1	1	1
	------------------------------------------------------------------------TTGCATAGTCACAAAAGTGA------------------------------------	20	458	368	-	-	1	3	1	-	1	-
	------------------------------------------------------------------------TTGCATAGTCACAAAAGTG-------------------------------------	19	332	291	-	-	-	1	1	1	1	-
	------------------------------------------------------------------------TTGCATAGTCACAAAAGTGATCA---------------------------------	23	107	86	-	-	-	-	-	-	-	-
rno-miR-153	------------------------------------------------------------------------TTGCATAGTCACAAAAGTGATC----------------------------------	22	112	69	-	-	-	-	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTG-----------------------------------------------------------------------------	18	86	86	-	2	-	-	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGCAGCT------------------------------------------------------------------------	23	89	80	-	-	-	-	-	-	-	-
	------------------------------------------------------------------------TTGCATAGTCACAAAAGTGAT-----------------------------------	21	83	49	-	1	-	-	1	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGCAGC-------------------------------------------------------------------------	22	58	61	-	-	-	-	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGCAG--------------------------------------------------------------------------	21	56	51	-	-	-	1	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGCA---------------------------------------------------------------------------	20	50	43	-	-	-	-	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGC----------------------------------------------------------------------------	19	49	40	1	-	-	-	1	-	1	1
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTGA------------------------------------	19	18	15	1	-	-	-	-	-	-	-
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTG-------------------------------------	18	16	6	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTGAT-----------------------------------	20	10	3	-	-	-	-	-	-	-	-
	------------------------------------------------------------------------TTGCATAGTCACAAAAGTGATCAT--------------------------------	24	5	6	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGCAG--------------------------------------------------------------------------	20	10	1	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTGATCA---------------------------------	22	7	2	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTGATC----------------------------------	21	3	2	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGCAGCT------------------------------------------------------------------------	22	4	1	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGC----------------------------------------------------------------------------	18	3	2	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------------TGCATAGTCACAAAAGTGATCAT--------------------------------	23	3	2	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGCAGC-------------------------------------------------------------------------	21	-	4	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGCA---------------------------------------------------------------------------	19	1	3	-	-	-	-	-	-	-	-
	----------------------------------TCATTTTTGTGATGTTGCAGCTA-----------------------------------------------------------------------	23	-	2	-	-	-	-	-	-	-	-
	---------------------------------GTCATTTTTGTGATGTTGCAGCTA-----------------------------------------------------------------------	24	1	1	-	-	-	-	-	-	-	-
	---------------------------------------------------------------------------CATAGTCACAAAAGTGATCAT--------------------------------	21	1	-	-	-	-	-	-	-	-	-
rat	--------------------AGCGGTGGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTG---------------------
human	-----CCTTGCCAGCTAATTAGCGGTGGCCAGTGTCATTTTTGTGATGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTGACTGTACTGCAGGG-------
mouse	CCTTACTTTGCCAGCTACTTAGCGGTGGCCGGTGTCATTTTTGTGACGTTGCAGCTAGTAATATGAGCCCAGTTGCATAGTCACAAAAGTGATCATTGGAAACTGTGACTGCA--GCAGGGACATGGG
	******** *********** **********************************************************
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	ENSRNOT00000006942 ENSRNOG00000005003 Ptprn2
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	ENSRNOT00000040092 ENSRNOG00000005003 Ptprn2
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053638 ENSRNOG00000035515 rno-mir-153
rat	.(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).	1.000 -41.30
human	(((((.(((.((....(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).....))))))))))	0.999 -50.30
mouse	((...((((((..((......(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..)))))....)). ))))))....)).	0.999 -51.60

rat	chromosome:6:144521037:144521123:1	Same_strand\|Intronic_coding\|ENSRNOT00000040092\|ENSRNOG00000005003 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053638\|ENSRNOG00000035515 ## ENSRNOG00000005003\|protein_coding\|Ptprn2\|Receptor-type tyrosine-protein phosphatase N2 precursor (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin). [Source:UniProtKB/Swiss-Prot;Acc:Q63475] ## ENSRNOG00000035515\|miRNA\|rno-mir-153\|rno-mir-153 [Source:miRBase;Acc:MI0000922] ## {MIR: rno-mir-153}
human	chromosome:7:157059775:157059890:-1	Same_strand\|Intronic_coding\|ENST00000389418\|ENSG00000155093\|protein_coding\|Receptor-type tyrosine-protein phosphatase N2 Precursor (R-PTP-N2)(EC 3.1.3.48)(Islet cell autoantigen-related protein)(ICAAR)(IAR)(Phogrin) [Source:UniProtKB/Swiss-Prot;Acc:Q92932] ## Same_strand\|Boundary_non-coding\|ENST00000403757\|ENSG00000155093\|protein_coding\|Receptor-type tyrosine-protein phosphatase N2 Precursor (R-PTP-N2)(EC 3.1.3.48)(Islet cell autoantigen-related protein)(ICAAR)(IAR)(Phogrin) [Source:UniProtKB/Swiss-Prot;Acc:Q92932] ## {MIR: hsa-mir-153-2}
mouse	chromosome:12:118489261:118489386:1	Same_strand\|Boundary_non-coding\|ENSMUST00000084823\|ENSMUSG00000056553\|protein_coding\|protein tyrosine phosphatase, receptor type, N polypeptide 2 Gene [Source:MGI Symbol;Acc:MGI:107418] ## Same_strand\|Intronic_coding\|ENSMUST00000070733\|ENSMUSG00000056553\|protein_coding\|protein tyrosine phosphatase, receptor type, N polypeptide 2 Gene [Source:MGI Symbol;Acc:MGI:107418] ## {MIR: mmu-mir-153}

rno-let-7i

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7i 5arm	9647	5047	1702	1870	5575	5254	2508	4111	2330	3501
rno-let-7i 3arm	309	275	23	30	245	167	86	140	97	81
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7i 5arm	0.321	0.220	0.092	0.111	0.272	0.398	0.195	0.216	0.154	0.233
rno-let-7i 3arm	0.010	0.012	0.001	0.002	0.012	0.013	0.007	0.007	0.006	0.005

sblock10826 (miRBase rno-let-7i) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-let-7i	0.001	no	no	0.39/0.63	18/26/0.25	0.0 0.0 0.6 0.0 0.0	0.1 0.0 1.0 0.0 0.0	19917 8 7 1 596	0 0 0 0 0	10 5 4 1 10	0 0 0 0 0	5 27 27 23 2	11 -11 -23 -1 17	5arm 5arm_loop_3arm 3arm_loop 3arm 3arm	1 1 1 1 1	nd nd nd nd nd	0.05 0.53 0.63 0.47 0.05	1 9 6 8 1	42998	10	-1	2

Families
Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand

		reads	miRBase family seed
seed	-----------------------GAGGUAG-----------------------------------------------------------------------------------------	41326	let-7a/7b/7c/7d/7e/7f/7i/miR-98
seed	-------------------------------------------------------------------------------UGCGCAA---------------------------------	1429	let-7i*
seed	------------------------AGGUAGU----------------------------------------------------------------------------------------	155	miR-196a/196b/196c
seed	----------------------UGAGGUA------------------------------------------------------------------------------------------	47	novel
seed	--------------------------------------------------------------------------------GCGCAAG--------------------------------	14	novel
seed	---------------------------------------------GUCGGGU-------------------------------------------------------------------	8	novel
seed	------------------------------------------------------UGACAUU----------------------------------------------------------	4	novel
seed	---------------------------------------------------------------------------------CGCAAGC-------------------------------	3	novel
seed	--------------------------GUAGUAG--------------------------------------------------------------------------------------	3	novel
seed	---------------------------UAGUAGU-------------------------------------------------------------------------------------	2	novel
seed	-------------------------------------------------------GACAUUG---------------------------------------------------------	2	novel
seed	-------------------------GGUAGUA---------------------------------------------------------------------------------------	2	novel
seed	----------------------------------------------------UGUGACA------------------------------------------------------------	1	novel
seed	---------------------CUGAGGU-------------------------------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------GCCCGCU---------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------TGAGGTAGTAGTTTGTGC-------------------------------------------------------------------------------	18	5140	2835	1284	1301	3253	2795	1446	2351	1323	1813
	----------------------TGAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------	19	1730	962	170	268	1148	1282	514	796	433	708
	----------------------TGAGGTAGTAGTTTGTGCTG-----------------------------------------------------------------------------	20	1262	630	102	138	592	636	215	432	260	378
	----------------------TGAGGTAGTAGTTTGTGCTGT----------------------------------------------------------------------------	21	770	316	56	66	259	256	182	273	167	290
rno-let-7i	----------------------TGAGGTAGTAGTTTGTGCTGTT---------------------------------------------------------------------------	22	633	257	79	82	272	232	129	224	119	269
rno-let-7i*	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCT-------------------	22	214	131	5	11	106	75	39	70	56	42
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCT-----------------------	18	36	56	7	4	47	41	14	25	9	18
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTT----------------------	19	13	45	6	3	44	25	19	17	14	11
	----------------------TGAGGTAGTAGTTTGTGCTGTTG--------------------------------------------------------------------------	23	49	18	4	4	22	23	7	18	15	26
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTG---------------------	20	25	13	-	6	22	12	4	12	6	5
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGC--------------------	21	17	26	2	3	20	9	4	9	11	4
	-----------------------GAGGTAGTAGTTTGTGCTG-----------------------------------------------------------------------------	19	14	6	2	-	11	10	1	4	1	4
	-----------------------GAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------	18	18	3	3	1	3	9	7	3	-	5
	---------------------CTGAGGTAGTAGTTTGTGC-------------------------------------------------------------------------------	19	10	5	1	6	2	3	2	2	7	1
	-----------------------GAGGTAGTAGTTTGTGCTGT----------------------------------------------------------------------------	20	7	5	1	-	2	3	2	3	-	2
	-----------------------GAGGTAGTAGTTTGTGCTGTT---------------------------------------------------------------------------	21	5	4	-	2	3	1	1	2	3	3
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCTA------------------	23	2	-	-	1	4	3	2	1	-	1
	--------------------------------------------GGTCGGGTTGTGACATTGC--------------------------------------------------------	19	1	1	-	-	3	1	-	2	-	-
	----------------------TGAGGTAGTAGTTTGTGCTGTTGG-------------------------------------------------------------------------	24	3	-	-	1	1	1	-	-	1	-
	-------------------------------------------------------------------------------TGCGCAAGCTACTGCCTT----------------------	18	-	-	3	2	-	1	-	-	-	-
	---------------------CTGAGGTAGTAGTTTGTG--------------------------------------------------------------------------------	18	1	1	-	-	1	1	-	-	1	-
	-------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTG---------------------	19	-	-	-	-	2	-	-	3	-	-
	----------------------TGAGGTAGTAGTTTGTGCTGTTGGT------------------------------------------------------------------------	25	2	-	-	-	1	1	-	-	-	-
	-------------------------GGTAGTAGTTTGTGCTGTT---------------------------------------------------------------------------	19	-	-	-	1	-	-	1	1	-	-
	-----------------------------------------------------GTGACATTGCCCGCTGTGGAGA--------------------------------------------	22	-	1	-	-	-	-	-	2	-	-
	------------------------------------------------------TGACATTGCCCGCTGTGGA----------------------------------------------	19	-	2	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTGCT-------------------	21	-	1	-	-	-	-	1	-	-	-
	--------------------------------------------------------------------------------GCGCAAGCTACTGCCTTG---------------------	18	-	-	-	-	-	-	2	-	-	-
	---------------------CTGAGGTAGTAGTTTGTGCT------------------------------------------------------------------------------	20	1	-	-	-	1	-	-	-	-	-
	--------------------------GTAGTAGTTTGTGCTGTT---------------------------------------------------------------------------	18	1	-	-	-	-	-	1	-	-	-
	------------------------------------------------------------------------------CTGCGCAAGCTACTGCCTTGCTAG-----------------	24	1	-	-	-	-	-	1	-	-	-
	---------------------CTGAGGTAGTAGTTTGTGCTG-----------------------------------------------------------------------------	21	-	1	-	-	-	-	-	-	-	-
	---------------------------------------------------TTGTGACATTGCCCGCTGTGGAGA--------------------------------------------	24	-	-	-	-	1	-	-	-	-	-
	-------------------------------------------------------------------------------TGCGCAAGCTACTGCCTTGC--------------------	20	-	-	-	-	-	-	-	1	-	-
	--------------------GCTGAGGTAGTAGTTTGTG--------------------------------------------------------------------------------	19	-	1	-	-	-	-	-	-	-	-
	--------------------------------------------------------------------------------GCGCAAGCTACTGCCTTGC--------------------	19	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------GTGACATTGCCCGCTGTGG-----------------------------------------------	19	-	-	-	-	-	1	-	-	-	-
	------------------------AGGTAGTAGTTTGTGCTGT----------------------------------------------------------------------------	19	-	1	-	-	-	-	-	-	-	-
	----------------------TGAGGTAGTAGTTTGTGCTGTTGGTC-----------------------------------------------------------------------	26	-	-	-	-	-	-	-	-	-	1
	-----------------------GAGGTAGTAGTTTGTGCTGTTG--------------------------------------------------------------------------	22	-	1	-	-	-	-	-	-	-	-
	------------------------AGGTAGTAGTTTGTGCTG-----------------------------------------------------------------------------	18	-	-	-	-	-	-	-	-	-	1
	------------------------------------------------------------TGCCCGCTGTGGAGATAAC----------------------------------------	19	-	-	-	-	-	-	-	-	1	-
rat	-----------------CTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAG-----------------
human	----------------------TGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTG---------------------
mouse	GCTCCCACACCATGGCCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTCGGGTTGTGACATTGCCCGCTGTGGAGATAACTGCGCAAGCTACTGCCTTGCTAGTGCTGGTGATGCTCAGC
	****************************************************************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053765 ENSRNOG00000035642 rno-let-7i
rat	(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))))))))	1.000 -42.10
human	.(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))).	0.811 -36.30
mouse	(((..((((((..(((.(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).)))))))))))))))))))))).))))))).))...)))	0.810 -54.40

rat	chromosome:7:62755360:62755444:-1	Same_strand\|Boundary_non-coding\|ENSRNOT00000053765\|ENSRNOG00000035642 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053765\|ENSRNOG00000035642 ## ENSRNOG00000035642\|miRNA\|rno-let-7i\|rno-let-7i [Source:miRBase;Acc:MI0000835] ## {SimpF: oe = 0.90 0 CpG} ## {MIR: rno-let-7i}
human	chromosome:12:61283713:61283837:1	Same_strand\|Boundary_non-coding\|ENST00000362309\|ENSG00000199179\|miRNA\|hsa-let-7i [Source:miRBase;Acc:MI0000434] ## {SimpF: oe = 0.88 0 CpG,rank = 2 1 FirstEF} ## {MIR: hsa-let-7i}
mouse	chromosome:10:122422679:122422797:-1	Same_strand\|Boundary_non-coding\|ENSMUST00000083472\|ENSMUSG00000065406\|miRNA\|mmu-let-7i [Source:miRBase;Acc:MI0000138] ## {SimpF: oe = 0.96 1 CpG} ## {MIR: mmu-let-7i}

rno-mir-138

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-138 5arm	137431.667	104646	345	271	8289	3120.333	341	357	1169	1172
rno-mir-138 3arm	2144	1527	7	7	112	27	13	20	14	15
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-138 5arm	4.568	4.567	0.019	0.016	0.404	0.236	0.027	0.019	0.077	0.078
rno-mir-138 3arm	0.071	0.067	0.000	0.000	0.005	0.002	0.001	0.001	0.001	0.001

sblock12151 (miRBase rno-mir-138-1) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-138-1	0.001	no	no	0.44/0.61	18/26/0.34	0.2 0.0 0.0 0.0	0.2 0.3 0.0 1.4	14 157592 1 2756	0 0 0 0	4 10 1 10	0 0 0 0	2 22 45 15	28 9 -14 7	5arm 5arm_loop 5arm_loop_3arm 3arm	1 2 2 2	nd nd nd nd	0.22 0.21 0.47 0.14	2 3 5 2	255405	10	-2	2

Families
Member of family miR-138 (seed GCUGGUG): rno-mir-138, rno-mir-138, block601999_cand

		reads	miRBase family seed
seed	-----------------------GCUGGUG----------------------------------------------------------------------	251951	miR-138
seed	---------------------------------------------------------------CUACUUC------------------------------	2935	novel
seed	-------------------------------------------------------------GGCUACU--------------------------------	169	miR-138*
seed	------------------------CUGGUGU---------------------------------------------------------------------	142	novel
seed	----------------------AGCUGGU-----------------------------------------------------------------------	93	novel
seed	----------------------------------------------------------------UACUUCA-----------------------------	35	novel
seed	-------------------------UGGUGUU--------------------------------------------------------------------	17	novel
seed	---------------------------GUGUUGU------------------------------------------------------------------	16	novel
seed	----GGCAUGG-----------------------------------------------------------------------------------------	14	novel
seed	--------------------------GGUGUUG-------------------------------------------------------------------	11	novel
seed	---UGGCAUG------------------------------------------------------------------------------------------	7	novel
seed	--------------------------------------------------------------GCUACUU-------------------------------	7	novel
seed	-----------------------------------------------------------------ACUUCAC----------------------------	5	novel
seed	----------------------------------------------UGCCAAU-----------------------------------------------	1	novel
seed	------------------------------UUGUGAA---------------------------------------------------------------	1	novel
seed	----------------------------UGUUGUG-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------AGCTGGTGTTGTGAATCAG-----------------------------------------------------------	19	63971	46472	162	111	3981	1415	175	169	488	510
	----------------------AGCTGGTGTTGTGAATCA------------------------------------------------------------	18	26797	20352	69	49	1540	694	54	70	211	258
	----------------------AGCTGGTGTTGTGAATCAGGCC--------------------------------------------------------	22	12349	9843	32	34	754	272	27	31	119	88
rno-miR-138	----------------------AGCTGGTGTTGTGAATCAGGCCG-------------------------------------------------------	23	12395	6862	43	27	589	188	18	38	107	66
	----------------------AGCTGGTGTTGTGAATCAGG----------------------------------------------------------	20	6568	10755	6	9	342	146	23	7	47	58
	----------------------AGCTGGTGTTGTGAATCAGGCCGT------------------------------------------------------	24	9220	5385	25	26	724	250	29	25	146	113
	----------------------AGCTGGTGTTGTGAATCAGGC---------------------------------------------------------	21	3569	2334	3	8	177	67	4	10	23	29
	--------------------------------------------------------------GCTACTTCACAACACCAGG-------------------	19	433	241	2	1	23	9	1	3	2	1
	--------------------------------------------------------------GCTACTTCACAACACCAGGGTC----------------	22	383	262	1	1	20	9	3	6	3	2
	--------------------------------------------------------------GCTACTTCACAACACCAGGG------------------	20	336	265	-	-	18	2	1	3	6	1
	--------------------------------------------------------------GCTACTTCACAACACCAG--------------------	18	240	192	-	1	12	2	3	2	-	2
	--------------------------------------------------------------GCTACTTCACAACACCAGGGT-----------------	21	208	196	4	1	22	4	1	1	1	4
	----------------------AGCTGGTGTTGTGAATCAGGCCGTT-----------------------------------------------------	25	50	180	-	3	8	2	1	1	-	4
	----------------------AGCTGGTGTTGTGAATCAGGCCGTTG----------------------------------------------------	26	55	82	-	-	3	1	-	-	2	1
	-----------------------GCTGGTGTTGTGAATCAG-----------------------------------------------------------	18	33	13	-	-	1	-	-	-	-	-
	-----------------------GCTGGTGTTGTGAATCAGG----------------------------------------------------------	19	21	20	-	-	2	1	1	-	-	-
	---------------------CAGCTGGTGTTGTGAATCAG-----------------------------------------------------------	20	21	20	-	-	-	2	-	-	-	-
	------------------------------------------------------------CGGCTACTTCACAACACCAGG-------------------	21	21	11	-	-	2	-	-	1	-	-
	------------------------------------------------------------CGGCTACTTCACAACACCAG--------------------	20	16	14	-	-	1	-	-	-	-	-
rno-miR-138*	------------------------------------------------------------CGGCTACTTCACAACACCAGGG------------------	22	18	11	-	1	1	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATCA------------------------------------------------------------	19	15	14	-	-	1	-	-	-	-	-
	------------------------------------------------------------CGGCTACTTCACAACACCAGGGTC----------------	24	13	8	-	-	-	-	-	-	-	-
	------------------------------------------------------------CGGCTACTTCACAACACC----------------------	18	8	8	-	-	1	-	-	1	1	1
	-----------------------GCTGGTGTTGTGAATCAGGCC--------------------------------------------------------	21	11	8	-	-	-	-	-	-	-	-
	------------------------------------------------------------CGGCTACTTCACAACACCA---------------------	19	8	9	-	-	2	-	-	-	-	-
	------------------------CTGGTGTTGTGAATCAGGC---------------------------------------------------------	19	3	9	-	-	-	1	-	-	-	-
	---------------------------------------------------------------CTACTTCACAACACCAGGGT-----------------	20	5	6	-	-	1	-	-	-	-	1
	---------------------------------------------------------------CTACTTCACAACACCAGGGTC----------------	21	7	4	-	-	-	-	-	-	1	-
	------------------------------------------------------------CGGCTACTTCACAACACCAGGGT-----------------	23	7	2	-	-	1	-	-	-	-	1
	-----------------------GCTGGTGTTGTGAATCAGGCCGT------------------------------------------------------	23	5	3	-	-	-	1	1	-	-	-
	-----------------------GCTGGTGTTGTGAATCAGGCCG-------------------------------------------------------	22	5	4	-	-	-	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATC-------------------------------------------------------------	18	5	2	-	-	1	-	-	-	-	-
	---TGGCATGGTGTTGTGGGAC------------------------------------------------------------------------------	19	-	8	-	-	-	-	-	-	-	-
	-----------------------GCTGGTGTTGTGAATCAGGCCGTT-----------------------------------------------------	24	2	4	-	-	1	-	-	-	-	-
	-------------------------TGGTGTTGTGAATCAGGCC--------------------------------------------------------	19	2	4	-	-	-	1	-	-	-	-
	---TGGCATGGTGTTGTGGGA-------------------------------------------------------------------------------	18	-	1	-	-	3	2	-	-	-	-
	--------------------------GGTGTTGTGAATCAGGCCG-------------------------------------------------------	19	4	2	-	-	-	-	-	-	-	-
	---------------------------------------------------------------CTACTTCACAACACCAGGG------------------	19	3	3	-	-	-	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATCAGGCCGT------------------------------------------------------	25	3	1	-	-	-	-	-	1	-	-
	-------------------------------------------------------------GGCTACTTCACAACACCAGGGTC----------------	23	4	-	-	-	1	-	-	-	-	-
	-----------------------GCTGGTGTTGTGAATCAGGC---------------------------------------------------------	20	4	1	-	-	-	-	-	-	-	-
	--------------------------GGTGTTGTGAATCAGGCCGT------------------------------------------------------	20	4	1	-	-	-	-	-	-	-	-
	--CTGGCATGGTGTTGTGGGAC------------------------------------------------------------------------------	20	1	3	-	-	-	1	-	-	-	-
	---------------------------------------------------------------CTACTTCACAACACCAGG-------------------	18	1	2	-	-	-	-	-	-	-	-
	--------------------------GGTGTTGTGAATCAGGCCGTT-----------------------------------------------------	21	1	1	-	-	1	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATCAGG----------------------------------------------------------	21	-	3	-	-	-	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATCAGGCC--------------------------------------------------------	23	1	2	-	-	-	-	-	-	-	-
	--CTGGCATGGTGTTGTGGG--------------------------------------------------------------------------------	18	-	1	-	-	-	1	-	-	-	-
	------------------------CTGGTGTTGTGAATCAGGCCGT------------------------------------------------------	22	1	1	-	-	-	-	-	-	-	-
	----------------------------------------------------------------TACTTCACAACACCAGGGT-----------------	19	-	-	-	-	2	-	-	-	-	-
	-------------------------TGGTGTTGTGAATCAGGCCG-------------------------------------------------------	20	1	1	-	-	-	-	-	-	-	-
	----------------------------------------------------------------TACTTCACAACACCAGGGTC----------------	20	2	-	-	-	-	-	-	-	-	-
	--------------------------GGTGTTGTGAATCAGGCC--------------------------------------------------------	18	1	1	-	-	-	-	-	-	-	-
	------------------------CTGGTGTTGTGAATCAGGCC--------------------------------------------------------	20	-	1	-	-	-	-	-	-	-	-
	---------------------------------------------------------------CTACTTCACAACACCAGGGTCT---------------	22	1	-	-	-	-	-	-	-	-	-
	---------------------------GTGTTGTGAATCAGGCCG-------------------------------------------------------	18	1	-	-	-	-	-	-	-	-	-
	---------------------CAGCTGGTGTTGTGAATCAGGCCG-------------------------------------------------------	24	-	1	-	-	-	-	-	-	-	-
	-------------------------TGGTGTTGTGAATCAGGC---------------------------------------------------------	18	1	-	-	-	-	-	-	-	-	-
	-------------------------TGGTGTTGTGAATCAGGCCGTT-----------------------------------------------------	22	-	1	-	-	-	-	-	-	-	-
	----------------------------------------------------------------TACTTCACAACACCAGGG------------------	18	1	-	-	-	-	-	-	-	-	-
	-------------------------------------------------------------GGCTACTTCACAACACCA---------------------	18	-	1	-	-	-	-	-	-	-	-
	-----------------------------GTTGTGAATCAGGCCGTTGCCAA------------------------------------------------	23	1	-	-	-	-	-	-	-	-	-
	------------------------CTGGTGTTGTGAATCAGGCCG-------------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
	-------------------------------------------------------------GGCTACTTCACAACACCAG--------------------	19	1	-	-	-	-	-	-	-	-	-
	------------------------------------------------------------CGGCTACTTCACAACACCAGGGTCT---------------	25	1	-	-	-	-	-	-	-	-	-
	---------------------------------------------TTGCCAATCAGAGAACGGC------------------------------------	19	-	1	-	-	-	-	-	-	-	-
	--------------------------------------------------------------GCTACTTCACAACACCAGGGTCTC--------------	24	-	1	-	-	-	-	-	-	-	-
rat	CTCTGGCATGGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGTCTCACTGCACTGCAGG-
human	--------TGGTGTGGTGGGGCAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACCACACTACAGGC
mouse	---------GGTGTTGTGGGACAGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGCCACACTGCACT------
	*** * *********************************************************** * * **
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053764 ENSRNOG00000035641 rno-mir-138-1
rat	..(((.((..((((.(((((((..(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).))))))).))))))))).	1.000 -51.30
human	((((((((((.(((..(((((((((((((...(((((((...........)))))))..))))))))))))).))).)))))))))).....	1.000 -54.10
mouse	(((((.(((((....(((((((((((((...(((((((...........)))))))..)))))))))))))..)).))).)))))	1.000 -41.80

rat	chromosome:8:127390278:127390376:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053764\|ENSRNOG00000035641 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000053764\|ENSRNOG00000035641 ## ENSRNOG00000035641\|miRNA\|rno-mir-138-1\|rno-mir-138-1 [Source:miRBase;Acc:MI0000912] ## {MIR: rno-mir-138-1}
human	chromosome:3:44130716:44130807:1	Same_strand\|Exonic_non-coding\|ENST00000385219\|ENSG00000207954\|miRNA\|hsa-mir-138-1 [Source:miRBase;Acc:MI0000476] ## {MIR: hsa-mir-138-1}
mouse	chromosome:9:122592003:122592087:1	Same_strand\|Exonic_non-coding\|ENSMUST00000083480\|ENSMUSG00000065414\|miRNA\|mmu-mir-138-1 [Source:miRBase;Acc:MI0000722] ## {MIR: mmu-mir-138-1}

rno-mir-133b

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-133b 5arm	1	0	0	0	0	0	0	0	0	0
rno-mir-133b 3arm	402	240	287.500	258	59.500	161.500	28810	39449.500	90.500	144
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-133b 5arm	0.000	0	0	0	0	0	0	0	0	0
rno-mir-133b 3arm	0.013	0.010	0.016	0.015	0.003	0.012	2.241	2.076	0.006	0.010

sblock12393 (miRBase rno-mir-133b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-133b	0.001	no	no	0.50/0.61	18/24/0.17	0.0 0.0	0.0 0.3	1 77160	0 0	1 10	0 0	10 17	6 7	5arm 3arm	1 2	nd nd	0.23 0.21	2 2	134486	10	3	0

Families
Member of family miR-133a/133b (seed UUGGUCC): rno-mir-133b, rno-mir-133a

		reads	miRBase family seed
seed	------------------------------------------------------------------UGGUCCC--------------------------------------------	85713	novel
seed	-----------------------------------------------------------------UUGGUCC---------------------------------------------	44475	miR-133a/133b
seed	-------------------------------------------------------------------GGUCCCC-------------------------------------------	4278	novel
seed	--------------------------------------------------------------------GUCCCCU------------------------------------------	16	novel
seed	---------------------------------------------------------------GUUUGGU-----------------------------------------------	1	novel
seed	----------------------------CUGGUCA----------------------------------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------UCCCCUU-----------------------------------------	1	novel
seed	----------------------------------------------------------------UUUGGUC----------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAG----------------------------------	18	236	150	233	180	33	125	18324	32341	77	88
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGC---------------------------------	19	158	82	106	114	30	78	12398	14097	25	68
	----------------------------------------------------------------TTTGGTCCCCTTCAACCAG----------------------------------	19	108	81	49	62	10	33	7069	8811	21	31
	----------------------------------------------------------------TTTGGTCCCCTTCAACCA-----------------------------------	18	87	50	69	39	19	24	6016	6518	19	29
	----------------------------------------------------------------TTTGGTCCCCTTCAACCAGC---------------------------------	20	71	30	33	43	3	20	4805	5806	14	17
	------------------------------------------------------------------TGGTCCCCTTCAACCAGC---------------------------------	18	15	15	22	10	3	10	1311	2021	8	7
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGCT--------------------------------	20	26	13	17	13	4	15	1249	2063	7	5
	----------------------------------------------------------------TTTGGTCCCCTTCAACCAGCT--------------------------------	21	36	32	13	14	3	5	1245	1578	2	7
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGCTA-------------------------------	21	13	8	10	12	2	2	1393	1472	2	9
rno-miR-133b	----------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTA-------------------------------	22	3	2	1	5	4	1	545	470	2	3
	----------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTAC------------------------------	23	11	3	2	2	1	2	211	277	-	2
	------------------------------------------------------------------TGGTCCCCTTCAACCAGCT--------------------------------	19	1	1	3	1	-	1	184	260	-	4
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGCTAC------------------------------	22	6	-	1	1	-	-	162	253	-	1
	------------------------------------------------------------------TGGTCCCCTTCAACCAGCTA-------------------------------	20	-	-	1	-	-	1	170	196	-	1
	------------------------------------------------------------------TGGTCCCCTTCAACCAGCTAC------------------------------	21	-	-	-	-	-	-	13	16	-	-
	-------------------------------------------------------------------GGTCCCCTTCAACCAGCT--------------------------------	18	-	-	-	-	-	-	3	8	-	-
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGCTACA-----------------------------	23	-	-	-	-	-	-	7	3	-	-
	----------------------------------------------------------------TTTGGTCCCCTTCAACCAGCTACA-----------------------------	24	-	-	-	-	-	-	3	3	-	-
	-------------------------------------------------------------------GGTCCCCTTCAACCAGCTA-------------------------------	19	-	-	-	-	-	-	2	2	-	-
	------------------------------------------------------------------TGGTCCCCTTCAACCAGCTACA-----------------------------	22	-	-	-	-	-	-	1	2	-	-
	--------------------------------------------------------------GGTTTGGTCCCCTTCAACC------------------------------------	19	-	-	-	-	-	-	-	1	-	-
	--------------------------------------------------------------------GTCCCCTTCAACCAGCTA-------------------------------	18	-	-	-	-	-	-	-	1	-	-
	---------------------------GCTGGTCAAACGGAACCAAGTC--------------------------------------------------------------------	22	1	-	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------GGTCCCCTTCAACCAGCTAC------------------------------	20	-	-	-	-	-	-	-	1	-	-
	-----------------------------------------------------------------TTGGTCCCCTTCAACCAGCTACAG----------------------------	24	-	-	-	-	-	-	1	-	-	-
	---------------------------------------------------------------GTTTGGTCCCCTTCAACCAG----------------------------------	20	-	-	-	-	-	-	-	1	-	-
rat	-----------------CCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAA----------------
human	---------------------------GCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGC---------------------------------
mouse	CTCCAAAGGGAGTGGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAAAGCTCAATATTTGGAG
	*********************************************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053694 ENSRNOG00000035571 rno-mir-133b
rat	(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))).......	1.000 -40.30
human	((((((..((.((.((((((.((.((((...)))))))))))).)).))..))))))	1.000 -22.20
mouse	(((((((..((((.((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..)))...))))....)))))))	1.000 -59.80

rat	chromosome:9:19405870:19405953:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053694\|ENSRNOG00000035571 ## ENSRNOG00000035571\|miRNA\|rno-mir-133b\|rno-mir-133b [Source:miRBase;Acc:MI0003490] ## {MIR: rno-mir-133b}
human	chromosome:6:52121678:52121801:1	Same_strand\|Boundary_non-coding\|ENST00000362210\|ENSG00000199080\|miRNA\|hsa-mir-133b [Source:miRBase;Acc:MI0000822] ## {MIR: hsa-mir-133b}
mouse	chromosome:1:20672851:20672967:1	Same_strand\|Exonic_non-coding\|ENSMUST00000083546\|ENSMUSG00000065480\|miRNA\|mmu-mir-133b [Source:miRBase;Acc:MI0000821] ## {MIR: mmu-mir-133b}

Back to summary page

other miRBase miRNAs:

Page 1

Page 11

miR-Intess™

rno-mir-770

sblock10436 (miRBase rno-mir-770) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-136

sblock10445 (miRBase rno-mir-136) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-376c

sblock10502 (miRBase rno-mir-376c) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-300

sblock10505 (miRBase rno-mir-300) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-485

sblock10514 (miRBase rno-mir-485) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-377

sblock10517 (miRBase rno-mir-377) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-153

sblock10542 (miRBase rno-mir-153) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-let-7i

sblock10826 (miRBase rno-let-7i) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-138

sblock12151 (miRBase rno-mir-138-1) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]

rno-mir-133b

sblock12393 (miRBase rno-mir-133b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]