miR-Intess™

other miRBase miRNAs

miRNAknown_lenNOK_cloningHIGH (1 loci)

miRNAknown_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)

rno-mir-484

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-484 3arm	817	584.500	135	204.500	553	611.500	233.500	468.500	423.500	472.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-484 3arm	0.027	0.026	0.007	0.012	0.027	0.046	0.018	0.025	0.028	0.031

sblock2258 (miRBase rno-mir-484) [miRNAknown_lenNOK_cloningHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-484

0.014

no

no

0.61/0.79

18/23/0.38

0.0 0.0

0.5 0.0

2 2220

0 0

2 10

0 0

26 13

-19 -2

loop 3arm_loop

1 1

nd nd

0.33 0.32

3 4

4643

10

na

na

		reads	miRBase family seed
seed	----------------------------------------------CAGGCUC------------------------	4584	miR-344/484
seed	-----------------------------------------------AGGCUCA-----------------------	55	novel
seed	---------------------------CGCGGCC-------------------------------------------	2	novel
seed	--------------------------------------------GUCAGGC--------------------------	1	novel
seed	---------------------------------------------UCAGGCU-------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------------------------------------TCAGGCTCAGTCCCCTCCC-------------	19	502	317	85	114	351	316	136	253	218	263
	---------------------------------------------TCAGGCTCAGTCCCCTCCCGA-----------	21	135	102	28	37	105	103	39	92	101	97
rno-miR-484	---------------------------------------------TCAGGCTCAGTCCCCTCCCGAT----------	22	89	89	16	27	47	111	30	73	57	66
	---------------------------------------------TCAGGCTCAGTCCCCTCC--------------	18	46	43	4	17	38	51	9	29	11	27
	---------------------------------------------TCAGGCTCAGTCCCCTCCCG------------	20	41	37	4	9	20	40	14	26	31	24
	---------------------------------------------TCAGGCTCAGTCCCCTCCCGATA---------	23	16	8	-	6	5	6	5	9	7	2
	----------------------------------------------CAGGCTCAGTCCCCTCCC-------------	18	8	6	-	3	2	2	3	1	-	4
	----------------------------------------------CAGGCTCAGTCCCCTCCCGA-----------	20	2	4	-	-	1	1	2	-	3	3
	----------------------------------------------CAGGCTCAGTCCCCTCCCGAT----------	21	1	-	-	-	1	3	-	-	-	-
	----------------------------------------------CAGGCTCAGTCCCCTCCCG------------	19	-	-	-	-	-	3	-	-	1	-
	--------------------------------------------GTCAGGCTCAGTCCCCTCCCGA-----------	22	-	-	-	-	1	-	-	-	-	-
	--------------------------TCGCGGCCCTGCTGCCTCG--------------------------------	19	-	-	-	-	-	-	-	-	-	1
	--------------------------TCGCGGCCCTGCTGCCTC---------------------------------	18	-	-	-	1	-	-	-	-	-	-
	-------------------------------------------CGTCAGGCTCAGTCCCCTC---------------	19	-	-	-	-	-	1	-	-	-	-
	----------------------------------------------CAGGCTCAGTCCCCTCCCGATAA--------	23	-	-	-	-	1	-	-	-	-	-
rat	GCATGCAGGGAAGGGGGGGCGGGGCCTCGCGGCCCTGCTGCCTCGTCAGGCTCAGTCCCCTCCCGATAAACCTCAAA
human	------------GGGGGGGC--TGCCTC---GGCCTGGGCCAGCCTCAGGCTCCGTCCCCTCCC-------------
	********   *****   * ****   *  * ******** **********
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000062148 ENSRNOG00000040395 rno-mir-484
rat	.......((((.(((((.((((((((....)))))))).((((....))))....))))))))).............	1.000 -38.20
human	(((((((.  ((....   ((((((((....)).)))))).)).))))))).	0.993 -26.50

rat	chromosome:10:826405:826481:-1	Same_strand|Exonic_non-coding|ENSRNOT00000062148|ENSRNOG00000040395 ## ENSRNOG00000040395|miRNA|rno-mir-484|rno-mir-484 [Source:miRBase;Acc:MI0006151] ## {MIR: rno-mir-484}
human	chromosome:1:11509178:11509294:-1	Opposite_strand|Boundary_non-coding|ENST00000304391|ENSG00000204624|protein_coding|Patched domain-containing protein 2 (Protein dispatched homolog 3) [Source:UniProtKB/Swiss-Prot;Acc:Q9P2K9] ## Opposite_strand|Boundary_coding|ENST00000294484|ENSG00000204624|protein_coding|Patched domain-containing protein 2 (Protein dispatched homolog 3) [Source:UniProtKB/Swiss-Prot;Acc:Q9P2K9]

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK (1 loci)

sblock2154 (miRBase rno-mir-194-2) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-194-2

0.001

no

no

0.42/0.80

18/26/0.67

0.3 0.0 0.0

0.7 2.3 1.6

9 20033 200

0 0 0

6 10 7

0 0 0

0 20 13

15 -8 -1

5arm 5arm_loop 3arm

1 2 2

8 10 46

0.47 0.29 0.11

6 4 2

24148

10

0

2

Clusters

Located in cluster 9: rno-mir-194, rno-mir-192

Families

Member of family miR-194 (seed GUAACAG): rno-mir-194, rno-mir-194

		reads	miRBase family seed
seed	---------------------GUAACAG----------------------------------------------------------------------	23616	miR-194
seed	----------------------------------------------------------CAGUGGG---------------------------------	270	novel
seed	----------------------UAACAGC---------------------------------------------------------------------	234	novel
seed	--------------------UGUAACA-----------------------------------------------------------------------	12	novel
seed	-CCCCAUG------------------------------------------------------------------------------------------	6	novel
seed	-----------------------AACAGCA--------------------------------------------------------------------	4	miR-21*
seed	--CCCAUGG-----------------------------------------------------------------------------------------	3	novel
seed	-------------------CUGUAAC------------------------------------------------------------------------	1	novel
seed	--------------------------AGCAACU-----------------------------------------------------------------	1	novel
seed	-----------------------------------------------------------AGUGGGG--------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--------------------TGTAACAGCAACTCCATGTG----------------------------------------------------------	20	134	43	1982	2130	31	34	22	30	674	1401
	--------------------TGTAACAGCAACTCCATG------------------------------------------------------------	18	118	48	1298	2161	43	29	13	33	703	1306
	--------------------TGTAACAGCAACTCCATGTGGAA-------------------------------------------------------	23	62	26	933	1966	19	27	14	17	653	1160
	--------------------TGTAACAGCAACTCCATGTGG---------------------------------------------------------	21	138	26	747	1074	31	28	11	16	143	1184
	--------------------TGTAACAGCAACTCCATGT-----------------------------------------------------------	19	58	7	499	661	14	10	-	14	256	451
rno-miR-194	--------------------TGTAACAGCAACTCCATGTGGA--------------------------------------------------------	22	11	7	207	410	7	5	1	4	124	214
	--------------------TGTAACAGCAACTCCATGTGGAAG------------------------------------------------------	24	2	1	34	51	1	-	-	-	26	24
	---------------------------------------------------------CCAGTGGGGCTGCTGTTATCTG-------------------	22	1	-	30	31	-	-	-	-	15	14
	---------------------GTAACAGCAACTCCATGTG----------------------------------------------------------	19	2	-	33	26	-	-	1	-	6	21
	---------------------------------------------------------CCAGTGGGGCTGCTGTTA-----------------------	18	2	-	30	16	-	-	-	-	14	9
	---------------------GTAACAGCAACTCCATGTGGAA-------------------------------------------------------	22	1	1	10	18	-	-	2	-	6	18
	---------------------GTAACAGCAACTCCATGTGG---------------------------------------------------------	20	1	-	15	16	-	-	-	-	-	23
	---------------------------------------------------------CCAGTGGGGCTGCTGTTATCT--------------------	21	3	1	18	5	1	-	-	-	4	10
	---------------------------------------------------------CCAGTGGGGCTGCTGTTATC---------------------	20	2	-	12	7	-	-	-	-	4	6
	---------------------------------------------------------CCAGTGGGGCTGCTGTTAT----------------------	19	1	1	10	7	-	-	-	-	4	6
	---------------------GTAACAGCAACTCCATGT-----------------------------------------------------------	18	1	-	11	3	-	-	-	-	1	5
	---------------------GTAACAGCAACTCCATGTGGA--------------------------------------------------------	21	-	-	3	5	1	-	-	-	1	3
	--------------------TGTAACAGCAACTCCATGTGGAAGT-----------------------------------------------------	25	-	1	2	3	-	-	-	-	-	2
	---------------------------------------------------------CCAGTGGGGCTGCTGTTATCTGG------------------	23	-	1	2	1	-	-	-	-	1	-
	-------------------CTGTAACAGCAACTCCATGTG----------------------------------------------------------	21	-	-	1	1	-	-	-	-	-	1
	CCCCCATGGCTCCCACCCC-------------------------------------------------------------------------------	19	1	-	-	1	-	-	-	-	-	1
	CCCCCATGGCTCCCACCCCC------------------------------------------------------------------------------	20	1	-	-	-	-	1	-	-	-	1
	-CCCCATGGCTCCCACCCCC------------------------------------------------------------------------------	19	-	-	1	-	-	1	1	-	-	-
	-------------------CTGTAACAGCAACTCCATGTGG---------------------------------------------------------	22	1	-	1	1	-	-	-	-	-	-
	-------------------CTGTAACAGCAACTCCATGT-----------------------------------------------------------	20	-	-	1	-	-	-	-	-	1	-
	----------------------TAACAGCAACTCCATGTGG---------------------------------------------------------	19	-	-	-	1	-	-	-	-	-	1
	----------------------TAACAGCAACTCCATGTGGAA-------------------------------------------------------	21	-	-	1	1	-	-	-	-	-	-
	-------------------CTGTAACAGCAACTCCATG------------------------------------------------------------	19	-	-	-	-	-	-	-	-	-	2
	-------------------------CAGCAACTCCATGTGGAA-------------------------------------------------------	18	-	-	1	-	-	-	-	-	-	-
	-------------------CTGTAACAGCAACTCCATGTGGA--------------------------------------------------------	23	-	-	-	1	-	-	-	-	-	-
	---------------------------------------------------------CCAGTGGGGCTGCTGTTATCTGGG-----------------	24	-	-	-	1	-	-	-	-	-	-
	--------------------TGTAACAGCAACTCCATGTGGAAGTG----------------------------------------------------	26	-	1	-	-	-	-	-	-	-	-
	----------------------------------------------------------CAGTGGGGCTGCTGTTAT----------------------	18	-	-	-	1	-	-	-	-	-	-
	------------------CCTGTAACAGCAACTCCATG------------------------------------------------------------	20	-	-	-	-	-	-	-	-	-	1
	-------------------CTGTAACAGCAACTCCAT-------------------------------------------------------------	18	-	-	1	-	-	-	-	-	-	-
rat	CCCCCATGGCTCCCACCCCCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGA-TTCCAGTGGGGCTGCTGTTATCTGGGGTGGAGGCTGG------
human	------TGG-TGTTATCAAGTGTAACAGCAACTCCATGTGGAC-TGTGTACCAATTTCCAGTGGAGATGCTGTTACTTTTGATGGTTACCAACTTGC-
mouse	------TGG-AGTCATCGGGTGTAACAGCAACTCCATGTGGAC-TGTGCTCGGA-TTCCAGTGGAGCTGCTGTTACTTCTGATGGCCTCCAACCGGCT
	***     * *   **********************  **    *  * ********* * ********  *  * ***   *
	+++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>      >>>>>	ENSRNOT00000054830 ENSRNOG00000021028 Ehd1
	...........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>      .....	ENSRNOT00000053711 ENSRNOG00000035588 rno-mir-194-2
rat	.......(((..(((((((..(((((((((..(((....)))....(((((((. ...)))))))..)))))))))..)))))))..)))..	1.000 -49.30
human	((( ((..((((((.(((((((((.((((((.((((. .((......)).)))))))))).))))))))).))))))...)))))......	1.000 -37.60
mouse	((( ((((((((((.(((((((((.((((((.((((( ((....))). .)))))))))).))))))))).))))))))).)))).......	1.000 -47.10

rat	chromosome:1:209040065:209040155:1	Same_strand|Exonic_non-coding|ENSRNOT00000053711|ENSRNOG00000035588 ## Same_strand|Boundary_non-coding|ENSRNOT00000028576|ENSRNOG00000021028 ## Same_strand|Intronic_non-coding|ENSRNOT00000054830|ENSRNOG00000021028 ## ENSRNOG00000021028|protein_coding|Ehd1|EH domain-containing protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q641Z6] ## ENSRNOG00000035588|miRNA|rno-mir-194-2|rno-mir-194-2 [Source:miRBase;Acc:MI0000938] ## {MIR: rno-mir-194-2}
human	chromosome:1:218358117:218358205:-1	Opposite_strand|Intronic_coding|ENST00000302637|ENSG00000067704|protein_coding|Isoleucyl-tRNA synthetase, mitochondrial Precursor (EC 6.1.1.5)(Isoleucine--tRNA ligase)(IleRS) [Source:UniProtKB/Swiss-Prot;Acc:Q9NSE4] ## Same_strand|Boundary_non-coding|ENST00000384892|ENSG00000207624|miRNA|hsa-mir-194-1 [Source:miRBase;Acc:MI0000488] ## {MIR: hsa-mir-194-1}
mouse	chromosome:1:187137191:187137279:1	Opposite_strand|Intronic_coding|ENSMUST00000027921|ENSMUSG00000026618|protein_coding|isoleucine-tRNA synthetase 2, mitochondrial Gene [Source:MGI (curated);Acc:Iars2-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083647|ENSMUSG00000065581|miRNA|mmu-mir-194-1 [Source:miRBase;Acc:MI0000236] ## {MIR: mmu-mir-194-1}

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK (1 loci)

rno-mir-383

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-383 5arm	2974	2319	1	2	38	13	1	4	3	1
rno-mir-383 3arm	45.333	43.833	0.500	0.500	1	0.500	0	0.500	0	0.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-383 5arm	0.099	0.101	0.000	0.000	0.002	0.001	0.000	0.000	0.000	0.000
rno-mir-383 3arm	0.002	0.002	0.000	0.000	0.000	0.000	0	0.000	0	0.000

sblock4926 (miRBase rno-mir-383) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-383

0.003

no

no

0.37/0.67

18/25/0.50

0.4 0.0 0.0

0.9 0.0 0.0

4598 1 91

0 0 0

10 1 8

0 0 0

4 27 7

7 -13 5

5arm 5arm_loop_3arm 3arm

1 1 2

nd nd nd

0.14 0.53 0.29

2 8 4

5528

10

1

1

Families

Member of family miR-383 (seed GAUCAGA): rno-mir-383, block2608010_cand

		reads	miRBase family seed
seed	--------------AGAUCAG--------------------------------------------------------------------	3044	novel
seed	---------------GAUCAGA-------------------------------------------------------------------	2307	miR-383
seed	--------------------------------------------------------CACAGCA--------------------------	152	novel
seed	---------------------------------------------------------ACAGCAC-------------------------	18	novel
seed	----------------AUCAGAA------------------------------------------------------------------	2	novel
seed	----------------------------------------------------------CAGCACU------------------------	2	novel
seed	-------------CAGAUCA---------------------------------------------------------------------	2	novel
seed	-------------------------------------UGGGUGG---------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-------------CAGATCAGAAGGTGACTGTG--------------------------------------------------------	20	573	421	-	-	7	1	-	1	2	-
	--------------AGATCAGAAGGTGACTGTG--------------------------------------------------------	19	469	385	-	1	11	3	-	1	-	-
	-------------CAGATCAGAAGGTGACTG----------------------------------------------------------	18	400	271	-	-	3	1	1	-	-	-
	--------------AGATCAGAAGGTGACTGT---------------------------------------------------------	18	338	266	1	-	5	2	-	-	-	1
	-------------CAGATCAGAAGGTGACTGT---------------------------------------------------------	19	317	257	-	-	2	3	-	-	-	-
	-------------CAGATCAGAAGGTGACTGTGGC------------------------------------------------------	22	288	216	-	-	3	-	-	-	-	-
	--------------AGATCAGAAGGTGACTGTGGC------------------------------------------------------	21	219	178	-	1	3	-	-	-	-	-
rno-miR-383	--------------AGATCAGAAGGTGACTGTGGCT-----------------------------------------------------	22	112	106	-	-	1	2	-	2	1	-
	--------------AGATCAGAAGGTGACTGTGG-------------------------------------------------------	20	82	66	-	-	2	-	-	-	-	-
	-------------CAGATCAGAAGGTGACTGTGG-------------------------------------------------------	21	77	68	-	-	1	-	-	-	-	-
	-------------CAGATCAGAAGGTGACTGTGGCT-----------------------------------------------------	23	60	41	-	-	-	1	-	-	-	-
	-------------------------------------------------------CCACAGCACTGCCTGGTCAGA-------------	21	46	45	-	-	2	-	-	1	-	-
	--------------AGATCAGAAGGTGACTGTGGCTT----------------------------------------------------	23	18	16	-	-	-	-	-	-	-	-
	-------------CAGATCAGAAGGTGACTGTGGCTT----------------------------------------------------	24	7	14	-	-	-	-	-	-	-	-
	-------------------------------------------------------CCACAGCACTGCCTGGTCA---------------	19	10	9	-	1	-	-	-	-	-	1
	-------------------------------------------------------CCACAGCACTGCCTGGTCAG--------------	20	10	6	1	-	-	1	-	-	-	-
	--------------AGATCAGAAGGTGACTGTGGCTTT---------------------------------------------------	24	6	9	-	-	-	-	-	-	-	-
	-------------------------------------------------------CCACAGCACTGCCTGGTC----------------	18	4	4	-	-	-	-	-	-	-	-
	--------------------------------------------------------CACAGCACTGCCTGGTCAGAAA-----------	22	5	3	-	-	-	-	-	-	-	-
	-------------CAGATCAGAAGGTGACTGTGGCTTT---------------------------------------------------	25	5	3	-	-	-	-	-	-	-	-
	-------------------------------------------------------CCACAGCACTGCCTGGTCAGAAA-----------	23	4	2	-	-	-	-	-	-	-	-
	--------------------------------------------------------CACAGCACTGCCTGGTCAGA-------------	20	1	5	-	-	-	-	-	-	-	-
	-------------------------------------------------------CCACAGCACTGCCTGGTCAGAA------------	22	1	4	-	-	-	-	-	-	-	-
	--------------------------------------------------------CACAGCACTGCCTGGTCAGAA------------	21	-	2	-	-	-	-	-	-	-	-
	--------------------------------------------------------CACAGCACTGCCTGGTCAG--------------	19	-	2	-	-	-	-	-	-	-	-
	---------------------------------------------------------ACAGCACTGCCTGGTCAGAAA-----------	21	1	1	-	-	-	-	-	-	-	-
	------------TCAGATCAGAAGGTGACTG----------------------------------------------------------	19	1	-	-	-	-	-	-	-	-	-
	---------------GATCAGAAGGTGACTGTGGC------------------------------------------------------	20	-	1	-	-	-	-	-	-	-	-
	------------------------------------TTGGGTGGATATTAATCAG----------------------------------	19	1	-	-	-	-	-	-	-	-	-
	------------TCAGATCAGAAGGTGACTGTG--------------------------------------------------------	21	-	1	-	-	-	-	-	-	-	-
	---------------GATCAGAAGGTGACTGTGGCT-----------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
rat	---------TCCTCAGATCAGAAGGTGACTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCA------
human	GTCACCTGCTCCTCAGATCAGAAGGTGATTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCAAGTGTC
mouse	GTCACCTGCTCCTCAGATCAGAAGGTGACTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGAAAGAGCAAGTGTC
	******************* ******************************************************
	.....         >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>      .....	ENSRNOT00000053712 ENSRNOG00000035589 rno-mir-383
rat	......((((((..((((.((((((((...(((........)))))))))))))))..))))))..........	1.000 -28.90
human	..(((.(((((.((.((((((..((((.((((((((...(((........)))))))))))))))..)))))).))..))))).)))..	1.000 -36.70
mouse	..(((.(((((.((.((((((..((((.((((((((...(((........)))))))))))))))..)))))).))..))))).)))..	1.000 -39.10

rat	chromosome:16:57663841:57663914:1	Same_strand|Boundary_non-coding|ENSRNOT00000053712|ENSRNOG00000035589 ## Same_strand|Exonic_non-coding|ENSRNOT00000053712|ENSRNOG00000035589 ## ENSRNOG00000035589|miRNA|rno-mir-383|rno-mir-383 [Source:miRBase;Acc:MI0003478] ## {MIR: rno-mir-383}
human	chromosome:8:14755310:14755398:-1	Same_strand|Boundary_non-coding|ENST00000329135|ENSG00000185053|protein_coding|Zeta-sarcoglycan (Zeta-SG)(ZSG1) [Source:UniProtKB/Swiss-Prot;Acc:Q96LD1] ## Same_strand|Intronic_coding|ENST00000382080|ENSG00000185053|protein_coding|Zeta-sarcoglycan (Zeta-SG)(ZSG1) [Source:UniProtKB/Swiss-Prot;Acc:Q96LD1] ## {MIR: hsa-mir-383}
mouse	chromosome:8:39315179:39315267:-1	Same_strand|Intronic_coding|ENSMUST00000118896|ENSMUSG00000039539|protein_coding|sarcoglycan zeta Gene [Source:MGI (curated);Acc:Sgcz-001] ## Same_strand|Boundary_non-coding|ENSMUST00000035806|ENSMUSG00000039539|protein_coding|sarcoglycan zeta Gene [Source:MGI (curated);Acc:Sgcz-001] ## {MIR: mmu-mir-383}

miRNAknown_lenNOK_cloningHIGH_shortStem (1 loci)

rno-mir-431

sblock10441 (miRBase rno-mir-431) [miRNAknown_lenNOK_cloningHIGH_shortStem]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-431

0.040

no

no

0.47/0.68

18/26/0.59

0.0 1.0 0.0 0.0 0.1 0.0

1.0 0.5 0.0 0.0 2.3 0.2

402 2 1 1 365 8

0 0 0 0 0 0

9 1 1 1 7 2

0 0 0 0 0 0

19 33 39 46 60 83

-22 -35 -40 -50 -67 -84

loop loop loop loop loop loop

1 1 1 1 1 1

nd nd nd nd nd nd

0.11 0.42 0.42 0.18 0.21 0.42

2 7 5 2 2 7

1075

9

na

na

Clusters

Located in cluster 66: rno-mir-431, rno-mir-433

		reads	miRBase family seed
seed	--------------------GUCUUGC---------------------------------------------------------------------------------------	515	miR-431
seed	---------------------------------------------------------------AGGUCGU--------------------------------------------	392	novel
seed	-------------------------------------------------------------GCAGGUC----------------------------------------------	85	novel
seed	------------------------------------------------------------UGCAGGU-----------------------------------------------	61	novel
seed	------------------------------------------------------------------------------------CGCAAGA-----------------------	9	novel
seed	---------------------UCUUGCA--------------------------------------------------------------------------------------	6	novel
seed	---------------------------------------------------------CGUUGCA--------------------------------------------------	1	novel
seed	----------------------------------CAUGCAG-------------------------------------------------------------------------	1	novel
seed	------------------------------------UGCAGGC-----------------------------------------------------------------------	1	novel
seed	-------------------UGUCUUG----------------------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------------------CAGGUCG---------------------------------------------	1	novel
seed	-----------------------------------------------CUGACGG------------------------------------------------------------	1	novel
seed	----------------------------------------GGCCACA-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-431	-------------------TGTCTTGCAGGCCGTCATGCA--------------------------------------------------------------------------	21	118	97	-	4	6	2	1	1	6
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGC----------------------------------	18	66	58	-	1	-	-	-	-	-
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTCTC-----------------------------	23	62	47	-	-	-	1	1	-	-
	-------------------TGTCTTGCAGGCCGTCAT-----------------------------------------------------------------------------	18	58	43	1	3	-	2	-	-	3
	-------------------TGTCTTGCAGGCCGTCATGC---------------------------------------------------------------------------	20	42	44	1	1	10	1	-	-	2
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTC-------------------------------	21	41	36	-	1	-	-	-	-	-
	-------------------TGTCTTGCAGGCCGTCATG----------------------------------------------------------------------------	19	34	21	-	1	4	2	-	-	-
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGCT---------------------------------	19	17	30	-	-	-	-	-	-	1
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGG-----------------------------------	19	25	5	-	-	-	1	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGG------------------------------------	19	18	10	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGG------------------------------------	18	12	6	-	-	-	-	-	-	-
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGCTT--------------------------------	20	10	5	1	-	-	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGC----------------------------------	21	11	4	1	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGC----------------------------------	20	5	10	-	-	-	-	-	-	-
	--------------------------------------------------------------CAGGTCGTCTTGCAGGGCTTCT------------------------------	22	11	3	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCT---------------------------------	21	3	3	-	-	-	-	-	-	-
	-------------------TGTCTTGCAGGCCGTCATGCAG-------------------------------------------------------------------------	22	2	3	-	-	1	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCT---------------------------------	22	4	2	-	-	-	-	-	-	-
	-----------------------------------------------------------------------------------TCGCAAGACGACATCTTCA------------	19	4	2	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTC-------------------------------	23	4	1	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTCTC-----------------------------	25	5	-	-	-	-	-	-	-	-
	--------------------GTCTTGCAGGCCGTCATGCA--------------------------------------------------------------------------	20	2	2	-	-	1	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCTT--------------------------------	23	2	3	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTT--------------------------------	22	2	2	-	-	-	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAG-------------------------------------	18	-	3	-	-	-	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGGGCTTCTC-----------------------------	26	2	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------------------------TCGCAAGACGACATCTTC-------------	18	2	-	-	-	-	-	-	-	-
	-------------------TGTCTTGCAGGCCGTCATGCAGG------------------------------------------------------------------------	23	-	1	-	-	-	-	-	-	-
	------------------------------------------------------------TGCAGGTCGTCTTGCAGGGCTTCT------------------------------	24	1	-	-	-	-	-	-	-	-
	---------------------------------TCATGCAGGCCACACTGAC--------------------------------------------------------------	19	-	1	-	-	-	-	-	-	-
	-------------------------------------------------------------GCAGGTCGTCTTGCAGGGC----------------------------------	19	1	-	-	-	-	-	-	-	-
	---------------------------------------AGGCCACACTGACGGTAAC--------------------------------------------------------	19	-	1	-	-	-	-	-	-	-
	--------------------------------------------------------ACGTTGCAGGTCGTCTTGCAG-------------------------------------	21	-	1	-	-	-	-	-	-	-
	-----------------------------------ATGCAGGCCACACTGACG-------------------------------------------------------------	18	-	1	-	-	-	-	-	-	-
	-----------------------------------------------------------TTGCAGGTCGTCTTGCAGGG-----------------------------------	20	-	1	-	-	-	-	-	-	-
	--------------------GTCTTGCAGGCCGTCATG----------------------------------------------------------------------------	18	1	-	-	-	-	-	-	-	-
	------------------GTGTCTTGCAGGCCGTCATGC---------------------------------------------------------------------------	21	-	1	-	-	-	-	-	-	-
	----------------------------------------------ACTGACGGTAACGTTGCAGGTC----------------------------------------------	22	1	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------------------------TCGCAAGACGACATCTTCATC----------	21	-	1	-	-	-	-	-	-	-
rat	tcctgcgcgtcctgcgaggTGTCTTGCAGGCCGTCATGCAggccacactgacggtaacgttgCAGGTCGTCTTGCAGGGCTTCTCgcaagacgacatcttcatcgccaacgacg
	******************************************************************************************************************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000054606 ENSRNOG00000036498 rno-mir-431
rat	..((((((((((((((((....))))))))((((((((.......)).))))))..))).)))))((((((((((..(....)..)))))))))).......(((....)))..	1.000 -45.80

rat

chromosome:6:134182307:134182420:1

Same_strand|Exonic_non-coding|ENSRNOT00000054606|ENSRNOG00000036498 ## ENSRNOG00000036498|miRNA|rno-mir-431|rno-mir-431 [Source:miRBase;Acc:MI0001722] ## {MIR: rno-mir-431}

miRNAknown_lenNOK_cloningHIGH_shortStem_randfoldOK (1 loci)

sblock7869 (miRBase rno-mir-181a-2) [miRNAknown_lenNOK_cloningHIGH_shortStem_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-181a-2

0.003

no

no

0.44/0.57

18/26/0.38

0.0 0.0

1.1 1.1

68553 256

0 0

10 10

0 0

38 12

-55 2

loop 3arm

2 2

nd nd

0.21 0.11

2 1

114705

10

na

na

Clusters

Located in cluster 48: rno-mir-181a, rno-mir-181b

Families

Member of family miR-181a/181b/181c/181d (seed ACAUUCA): rno-mir-181b, rno-mir-181c, rno-mir-181d, rno-mir-181a, rno-mir-181a, rno-mir-181b

		reads	miRBase family seed
seed	---------------------------------------ACAUUCA------------------------------------------------------------------------------------------	114181	miR-181a/181b/181c/181d
seed	------------------------------------------------------------------------------------CCACCAA---------------------------------------------	394	novel
seed	----------------------------------------CAUUCAA-----------------------------------------------------------------------------------------	89	novel
seed	-----------------------------------------------------------------------------------ACCACCA----------------------------------------------	13	novel
seed	------------------------------------------UUCAACG---------------------------------------------------------------------------------------	9	novel
seed	--------------------------------------------CAACGCU-------------------------------------------------------------------------------------	6	novel
seed	--------------------------------------AACAUUC-------------------------------------------------------------------------------------------	4	miR-543*
seed	-------------------------------------------UCAACGC--------------------------------------------------------------------------------------	3	novel
seed	-----------------------------------------AUUCAAC----------------------------------------------------------------------------------------	2	novel
seed	-------------------------------------------------------------------------------------CACCAAC--------------------------------------------	2	novel
seed	---------------------------------------------AACGCUG------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--------------------------------------AACATTCAACGCTGTCGG--------------------------------------------------------------------------------	18	13930	8065	341	351	4210	1765	1280	1969	2240	1385
	--------------------------------------AACATTCAACGCTGTCGGT-------------------------------------------------------------------------------	19	13221	7217	319	385	4400	1740	1027	1533	2004	1363
	--------------------------------------AACATTCAACGCTGTCGGTG------------------------------------------------------------------------------	20	8480	4792	229	253	2639	1179	620	1251	1366	625
rno-miR-181a	--------------------------------------AACATTCAACGCTGTCGGTGAGT---------------------------------------------------------------------------	23	4238	2492	123	178	1516	844	371	695	529	544
	--------------------------------------AACATTCAACGCTGTCGGTGAG----------------------------------------------------------------------------	22	2087	1031	36	53	663	356	171	297	272	297
	--------------------------------------AACATTCAACGCTGTCGGTGA-----------------------------------------------------------------------------	21	2028	1096	45	48	728	304	152	275	266	189
	--------------------------------------AACATTCAACGCTGTCGGTGAGTTT-------------------------------------------------------------------------	25	737	374	19	53	185	184	77	97	35	154
	--------------------------------------AACATTCAACGCTGTCGGTGAGTT--------------------------------------------------------------------------	24	56	31	1	1	12	10	3	9	16	9
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGT----------------------------------	19	16	10	3	1	14	5	24	32	10	9
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTG-----------------------------------	18	24	13	-	5	3	6	14	29	3	8
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGTACC-------------------------------	22	11	9	3	-	18	6	8	11	17	13
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGTACCT------------------------------	23	3	4	-	-	6	3	1	3	3	6
	---------------------------------------ACATTCAACGCTGTCGGTG------------------------------------------------------------------------------	19	7	9	-	-	5	3	2	1	1	-
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGTAC--------------------------------	21	1	-	1	-	9	2	5	3	2	-
	---------------------------------------ACATTCAACGCTGTCGGT-------------------------------------------------------------------------------	18	7	5	-	1	3	2	1	-	-	2
	---------------------------------------ACATTCAACGCTGTCGGTGAGT---------------------------------------------------------------------------	22	9	3	-	-	-	2	2	2	1	2
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGTA---------------------------------	20	3	2	-	1	1	-	1	5	2	1
	--------------------------------------AACATTCAACGCTGTCGGTGAGTTTG------------------------------------------------------------------------	26	5	2	-	-	2	1	1	-	-	4
	----------------------------------------------------------------------------------AACCACCAACCGTTGACTGT----------------------------------	20	4	1	-	-	-	-	-	-	-	2
	---------------------------------------ACATTCAACGCTGTCGGTGAG----------------------------------------------------------------------------	21	2	2	-	-	1	1	-	1	-	-
	---------------------------------------ACATTCAACGCTGTCGGTGAGTTT-------------------------------------------------------------------------	24	4	1	-	-	-	1	-	-	-	-
	---------------------------------------ACATTCAACGCTGTCGGTGA-----------------------------------------------------------------------------	20	1	2	-	-	1	1	-	-	-	-
	-----------------------------------------ATTCAACGCTGTCGGTGAGT---------------------------------------------------------------------------	20	1	-	-	-	1	-	-	1	1	-
	-------------------------------------GAACATTCAACGCTGTCGGT-------------------------------------------------------------------------------	20	-	-	-	-	2	-	-	1	-	-
	-----------------------------------------ATTCAACGCTGTCGGTGA-----------------------------------------------------------------------------	18	2	-	-	-	-	-	1	-	-	-
	-------------------------------------------TCAACGCTGTCGGTGAGT---------------------------------------------------------------------------	18	2	-	-	-	-	-	-	-	1	-
	----------------------------------------------------------------------------------AACCACCAACCGTTGACT------------------------------------	18	-	-	-	-	1	-	1	-	-	-
	-------------------------------------------TCAACGCTGTCGGTGAGTTT-------------------------------------------------------------------------	20	1	-	-	-	-	-	-	1	-	-
	----------------------------------------------------------------------------------AACCACCAACCGTTGACTGTAC--------------------------------	22	1	-	-	-	-	-	-	1	-	-
	----------------------------------------CATTCAACGCTGTCGGTG------------------------------------------------------------------------------	18	-	-	-	-	-	1	-	-	1	-
	--------------------------------------------CAACGCTGTCGGTGAGTTT-------------------------------------------------------------------------	19	1	1	-	-	-	-	-	-	-	-
	------------------------------------------TTCAACGCTGTCGGTGAG----------------------------------------------------------------------------	18	-	1	-	-	-	-	-	-	-	1
	------------------------------------------------------------------------------------CCACCAACCGTTGACTGTACC-------------------------------	21	1	-	-	-	-	-	-	-	-	-
	----------------------------------------------------------------------------------AACCACCAACCGTTGACTGTACC-------------------------------	23	-	-	-	-	-	1	-	-	-	-
	-----------------------------------------ATTCAACGCTGTCGGTGAG----------------------------------------------------------------------------	19	1	-	-	-	-	-	-	-	-	-
	---------------------------------------ACATTCAACGCTGTCGGTGAGTT--------------------------------------------------------------------------	23	1	-	-	-	-	-	-	-	-	-
	----------------------------------------------------------------------------------AACCACCAACCGTTGACTG-----------------------------------	19	-	-	-	-	-	1	-	-	-	-
	-------------------------------------------TCAACGCTGTCGGTGAGTT--------------------------------------------------------------------------	19	-	-	-	-	-	-	-	-	-	1
	-------------------------------------GAACATTCAACGCTGTCGG--------------------------------------------------------------------------------	19	-	-	-	-	-	1	-	-	-	-
	-----------------------------------------------------------------------------------ACCACCAACCGTTGACTGTACCTT-----------------------------	24	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------ATTCAACGCTGTCGGTGAGTTT-------------------------------------------------------------------------	22	1	-	-	-	-	-	-	-	-	-
	------------------------------------------TTCAACGCTGTCGGTGAGT---------------------------------------------------------------------------	19	-	-	-	-	1	-	-	-	-	-
	------------------------------------------------------------------------------------CCACCAACCGTTGACTGTACCT------------------------------	22	-	-	-	-	-	-	1	-	-	-
rat	AGATGGGCAACCAAGGCAGCCTTAAGAGGACTCCATGGAACATTCAACGCTGTCGGTGAGTTTGGGATTCAAAAACAAAAAAAACCACCAACCGTTGACTGTACCTTGGGATTCTTA-------------------
human	-------------------------GAGGACTCCAAGGAACATTCAACGCTGTCGGTGAGTTTGGGATTT-------GAAAAAACCACTGACCGTTGACTGTACCTTGGGGTCCTTACAGACGACACTACATTTCC
mouse	-------------------------GAGGACTCCATGGAACATTCAACGCTGTCGGTGAGTTTGGGATTCAAAAAC-AAAAAAACCACCGACCGTTGACTGTACCTTGGGATTCTT--------------------
	********** *********************************         **********  ******************** * ***
	--------------------------------------------------------------------------------------------------------------------------                   -----	ENSRNOT00000059783 ENSRNOG00000013232 Nr6a1
	--------------------------------------------------------------------------------------------------------------------------                   -----	ENSRNOT00000018751 ENSRNOG00000013232 Nr6a1
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                   .....	ENSRNOT00000053753 ENSRNOG00000035630 rno-mir-181a-2
rat	...(((....)))............(((((..(((.((.(((.((((((..((.((((.((((..................)))))))).)))))))).))).)).)))..))))).	1.000 -35.67
human	(((((((((((((.(((.((((((..(((((((.((((.......       ....))))))))))))))))).))).)))))))))))))....................	0.921 -46.20
mouse	(((((..(((.((.(((.((((((..(((((((.((((............. ....))))))))))))))))).))).)).)))..)))))	1.000 -35.33

rat	chromosome:3:18650904:18651020:1	Opposite_strand|Intronic_non-coding|ENSRNOT00000059783|ENSRNOG00000013232 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059782|ENSRNOG00000013232 ## Opposite_strand|Intronic_coding|ENSRNOT00000018751|ENSRNOG00000013232 ## Same_strand|Exonic_non-coding|ENSRNOT00000053753|ENSRNOG00000035630 ## ENSRNOG00000035630|miRNA|rno-mir-181a-2|rno-mir-181a-2 [Source:miRBase;Acc:MI0000925] ## ENSRNOG00000013232|protein_coding|Nr6a1|Germ cell nuclear factor (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q6EUW0] ## {Repeats: dust 18650974 18650976 0 class=dust} ## {MIR: rno-mir-181a-2}
human	chromosome:9:126494567:126494670:1	Opposite_strand|Intronic_coding|ENST00000344523|ENSG00000148200|protein_coding|Nuclear receptor subfamily 6 group A member 1 (Germ cell nuclear factor)(GCNF)(hGCNF)(Retinoid receptor-related testis-specific receptor)(RTR)(hRTR) [Source:UniProtKB/Swiss-Prot;Acc:Q15406] ## Same_strand|Boundary_non-coding|ENST00000384863|ENSG00000207595|miRNA|hsa-mir-181a-2 [Source:miRBase;Acc:MI0000269] ## {MIR: hsa-mir-181a-2}
mouse	chromosome:2:38708248:38708337:1	Opposite_strand|Intronic_coding|ENSMUST00000112875|ENSMUSG00000063972|protein_coding|nuclear receptor subfamily 6, group A, member 1 Gene [Source:MGI (curated);Acc:Nr6a1-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000112876|ENSMUSG00000063972|protein_coding|nuclear receptor subfamily 6, group A, member 1 Gene [Source:MGI (curated);Acc:Nr6a1-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083489|ENSMUSG00000065423|miRNA|mmu-mir-181a-2 [Source:miRBase;Acc:MI0000223] ## {Repeats: dust 0 class=dust} ## {MIR: mmu-mir-181a-2}

miRNAknown_lenNOK_mirtron (1 loci)

rno-mir-343

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-343 3arm	2	2	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-343 3arm	0.000	0.000	0	0	0	0	0	0	0	0

block976204 (miRBase rno-mir-343) [miRNAknown_lenNOK_mirtron]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-343

0.120

no

no

0.65/0.68

19/20/0.60

0.0

0.5

4

0

2

0

13

7

3arm

1

0

0.20

2

4

2

na

na

		reads	miRBase family seed
seed	-------------------------------------------------------------CUCCCUC-------------------------	4	miR-343
		len	cloning frequencies
			T1S1	T1S2
rno-miR-343	------------------------------------------------------------TCTCCCTCCGTGTGCCCAGA-------------	20	1	1
	------------------------------------------------------------TCTCCCTCCGTGTGCCCAG--------------	19	1	1
rat	gcaccttcatggacctggagtagagtgggtgtggcggggggagcagggcccagggcaaccTCTCCCTCCGTGTGCCCAGAtcctgcatgccaa
	*********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>	ENSRNOT00000024246 ENSRNOG00000017753 Ercc2
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000054424 ENSRNOG00000036303 rno-mir-343
rat	...((.....))...(((.(((((.((((..((.(((((((((.((((((...)))..))))))))))))))..))))..).))))...))).	1.000 -40.60

rat

chromosome:1:78904571:78904663:1

Same_strand|Boundary_coding|ENSRNOT00000024246|ENSRNOG00000017753 ## Same_strand|Exonic_non-coding|ENSRNOT00000054424|ENSRNOG00000036303 ## ENSRNOG00000017753|protein_coding|Ercc2|excision repair cross-complementing rodent repair deficiency, complementation group 2 Gene [Source:MGI (curated);Acc:Ercc2-002] ## ENSRNOG00000036303|miRNA|rno-mir-343|rno-mir-343 [Source:miRBase;Acc:MI0000628] ## {MIR: rno-mir-343}

miRNAknown_lenNOK_randfoldOK (1 loci)

rno-mir-881

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-881 3arm	2	0	0	0	0	1	0	0	2	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-881 3arm	0.000	0	0	0	0	0.000	0	0	0.000	0

block2895943 (miRBase rno-mir-881) [miRNAknown_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-881

0.001

no

no

0.36/0.37

19/22/0.67

0.2

2.0

5

0

3

0

10

5

3arm

1

nd

0.21

2

5

3

na

na

Clusters

Located in cluster 91: rno-mir-878, rno-mir-881

		reads	miRBase family seed
seed	-------------------------------------------------AACUGUG--------------------------	4	novel
seed	--------------------------------------------------ACUGUGG-------------------------	1	miR-881
		len	cloning frequencies
			T1S1	T3S2	T5S1
	------------------------------------------------TAACTGTGGCATTTCTGAA---------------	19	1	-	1
	------------------------------------------------TAACTGTGGCATTTCTGAATAG------------	22	-	1	1
rno-miR-881	-------------------------------------------------AACTGTGGCATTTCTGAATAGA-----------	22	1	-	-
rat	---TGCAGTACAATATTCAGAGTGGTAGCAGTCAC-TTTATTCTAAAGTAACTGTGGCATTTCTGAATAGAGTAATGTTCA-
mouse	GTGTGCAGTACAATATTCAGAGAGATAACAGTCACATCTTTTCTAAAGTAACTGTGTCTTTTCTGAATAGAGTAATGTTCAC
	******************* * ** ******* * * **************** * **********************
	.....   >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000063052 ENSRNOG00000041299 rno-mir-881
rat	.(((.(((..(((((((((..((.(((((.(( ((((...)))))).))))).))..)))))))))..))).)))...	1.000 -25.70
mouse	(((.(((.(((..(((((((((((((.(((((.((............)).))))))))))).)))))))..))).))).)))	1.000 -26.20

rat	chromosome:X:152852188:152852264:-1	Same_strand|Exonic_non-coding|ENSRNOT00000063052|ENSRNOG00000041299 ## ENSRNOG00000041299|miRNA|rno-mir-881|rno-mir-881 [Source:miRBase;Acc:MI0006123] ## {MIR: rno-mir-881}
mouse	chromosome:X:64055118:64055199:-1	Same_strand|Boundary_non-coding|ENSMUST00000104844|ENSMUSG00000078038|miRNA|mmu-mir-881 [Source:miRBase;Acc:MI0005474] ## {MIR: mmu-mir-881}

miRNAknown_multiarm_DicerNOK_randfoldOK (1 loci)

rno-mir-291a

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-291a 5arm	0.500	1	0.500	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-291a 5arm	0.000	0.000	0.000	0	0	0	0	0	0	0

sblock506 (miRBase rno-mir-291a) [miRNAknown_multiarm_DicerNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-291a

0.001

no

no

0.48/0.57

18/23/0.80

0.0 nd

2.3 nd

3 0

0 0

3 0

0 0

13 10

5 5

5arm 3arm

2 2

nd nd

0.14 0.17

1 1

3

3

2

4

Clusters

Located in cluster 2: hsa-mir-372, mmu-mir-294, mmu-mir-293, mmu-mir-291b, rno-mir-292, rno-mir-291a, rno-mir-290

Families

Member of family miR-291a (seed AAGUGCU): mmu-mir-295, hsa-mir-372, mmu-mir-294, rno-mir-291a

		reads	miRBase family seed
seed	---------------------------------AUCAAAG--------------------------------------------------------------------------------	3	miR-291a
seed	---------------------------------------------------------------------AAGUGCU--------------------------------------------	0	miR-291a
		len	cloning frequencies
			T1S1	T1S2	T2S1
rno-miR-291a-5p	--------------------------------CATCAAAGTGGAGGCCCTCTCT------------------------------------------------------------------	22	-	1	-
	--------------------------------CATCAAAGTGGAGGCCCT----------------------------------------------------------------------	18	1	-	-
	--------------------------------CATCAAAGTGGAGGCCCTCTC-------------------------------------------------------------------	21	-	-	1
rno-miR-291a-3p	--------------------------------------------------------------------AAAGTGCTTCCACTTTGTGTGCC-----------------------------	23	-	-	-
rat	-------------------CCGGTGTAGTAGCCATCAAAGTGGAGGCCCTCTCTTGGGCCCGAGCTAGAAAGTGCTTCCACTTTGTGTGCCACTGCATGGG-------------------
mouse	GCTGCTTGGAGCTGTTACACCTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGCTTCCACTTTGTGTGCCACTGCATGGGGAAAACATCATAGCTTTGC
	**  *****  ************************** *** **   ***********************************
	.....                   >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                   .....	ENSRNOT00000053583 ENSRNOG00000035460 rno-mir-291a
rat	((.(((((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))))).)).))))))).))	1.000 -41.50
mouse	((.(((..((..((((...(((((((((.(((((.((((((((((((.((.((((..........)))).)).)))))))))))))).))).)))))))))...))))))..)))...))	0.963 -52.10

rat	chromosome:1:64274628:64274709:-1	Same_strand|Exonic_non-coding|ENSRNOT00000053583|ENSRNOG00000035460 ## ENSRNOG00000035460|miRNA|rno-mir-291a|rno-mir-291a [Source:miRBase;Acc:MI0000965] ## {MIR: rno-mir-291a}
mouse	chromosome:7:3218901:3219020:1	Same_strand|Boundary_non-coding|ENSMUST00000104815|ENSMUSG00000078008|miRNA|mmu-mir-291a [Source:miRBase;Acc:MI0000389] ## {MIR: mmu-mir-291a}

miRNAknown_rep_cloningHIGH_multiarm_DicerNOK_Multihit_randfoldOK (1 loci)

sblock5209 (miRBase rno-mir-466b-1) [miRNAknown_rep_cloningHIGH_multiarm_DicerNOK_Multihit_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-466b-1

0.001

no

LTR/ERVK,SINE

0.35/0.46

18/25/0.88

0.0 0.0

0.0 0.0

141 268

0 0

10 10

0 0

11 19

7 1

5arm 3arm

2 278

nd nd

0.18 0.18

3 3

825

10

-6

-6

Families

Member of family miR-466b (seed AUGUGUG): mmu-mir-466b, rno-mir-466b, rno-mir-466b, rno-mir-466b-2, rno-mir-466b-1

		reads	miRBase family seed
seed	----------------------------------------------UACAUAC---------------------------------	434	novel
seed	------------UGUGUGU-------------------------------------------------------------------	287	novel
seed	----------UAUGUGU---------------------------------------------------------------------	57	novel
seed	-------------------GUGUAUG------------------------------------------------------------	30	novel
seed	-----------AUGUGUG--------------------------------------------------------------------	6	miR-466b
seed	---------------------------------------------------ACACACA----------------------------	3	novel
seed	--------------------UGUAUGU-----------------------------------------------------------	2	miR-297
seed	-----------------GUGUGUA--------------------------------------------------------------	2	novel
seed	---------------------------------------------AUACAUA----------------------------------	2	novel
seed	--------------UGUGUGU-----------------------------------------------------------------	1	novel
seed	------------------UGUGUAU-------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------------------------------------ATACATACACACACACATACAC-------------------	22	18	21	79	142	47	28	1	1	14	5
	-----------ATGTGTGTGTGTATGTCCATGT-----------------------------------------------------	22	5	4	56	36	20	29	1	9	1	5
	---------------------------------------------ATACATACACACACACATACACAC-----------------	24	6	2	19	14	2	1	-	2	-	2
	-----------ATGTGTGTGTGTATGTCCA--------------------------------------------------------	19	1	-	12	6	12	5	-	5	1	1
	-----------ATGTGTGTGTGTATGTCCATG------------------------------------------------------	21	1	-	10	8	2	2	2	3	1	3
	-----------ATGTGTGTGTGTATGTCCATGTGT---------------------------------------------------	24	-	1	9	2	3	7	-	1	1	2
	---------------------------------------------ATACATACACACACACATACACA------------------	23	1	2	10	6	3	-	-	-	1	-
	------------------TGTGTATGTCCATGTGTGT-------------------------------------------------	19	-	-	7	10	3	-	-	3	-	-
	---------ATATGTGTGTGTGTATGTC----------------------------------------------------------	19	1	1	5	1	4	6	1	1	-	-
	---------ATATGTGTGTGTGTATGTCCAT-------------------------------------------------------	22	-	2	6	3	1	-	-	-	-	-
	---------ATATGTGTGTGTGTATGTCCA--------------------------------------------------------	21	-	-	3	1	3	1	-	-	-	3
	---------ATATGTGTGTGTGTATGTCCATGT-----------------------------------------------------	24	-	-	1	4	1	3	-	1	-	-
	-----------ATGTGTGTGTGTATGTCCAT-------------------------------------------------------	20	1	-	3	-	3	1	-	-	-	1
	-----------ATGTGTGTGTGTATGTCCATGTG----------------------------------------------------	23	-	-	5	-	1	3	-	-	-	-
	---------------------------------------------ATACATACACACACACATACACACA----------------	25	-	-	3	2	1	-	-	-	1	-
	----------TATGTGTGTGTGTATGTCCATGT-----------------------------------------------------	23	-	-	4	-	-	-	-	-	-	1
	---------ATATGTGTGTGTGTATGTCC---------------------------------------------------------	20	-	-	-	-	1	1	-	1	-	1
	------------------TGTGTATGTCCATGTGTGTA------------------------------------------------	20	-	-	2	1	-	-	-	-	-	-
	------------------TGTGTATGTCCATGTGTG--------------------------------------------------	18	-	-	1	-	-	1	-	-	-	-
	-----------ATGTGTGTGTGTATGTCCATGTGTG--------------------------------------------------	25	-	-	2	-	-	-	-	-	-	-
	-------------------GTGTATGTCCATGTGTGTA------------------------------------------------	19	-	-	-	-	1	-	-	-	-	1
	--------------------------------------------------TACACACACACATACACACACGT-------------	23	-	-	1	-	-	-	-	-	-	1
	--------------------------------------------TATACATACACACACACATACAC-------------------	23	-	-	-	2	-	-	-	-	-	-
	------------------TGTGTATGTCCATGTGTGTATAT---------------------------------------------	23	-	-	1	-	-	-	-	-	-	-
	----------------TGTGTGTATGTCCATGTGTGTA------------------------------------------------	22	-	-	-	1	-	-	-	-	-	-
	-------------GTGTGTGTGTATGTCCATGT-----------------------------------------------------	20	-	-	-	1	-	-	-	-	-	-
	-----------------GTGTGTATGTCCATGTGTGTA------------------------------------------------	21	-	-	1	-	-	-	-	-	-	-
rno-miR-466b	----------TATGTGTGTGTGTATGTCCATG------------------------------------------------------	22	-	-	-	-	-	-	-	1	-	-
	--------------------------------------------------TACACACACACATACACACACGTG------------	24	-	-	-	-	1	-	-	-	-	-
	------------------TGTGTATGTCCATGTGTGTAT-----------------------------------------------	21	-	-	-	-	1	-	-	-	-	-
	----------------TGTGTGTATGTCCATGTGTGT-------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
rat	catgtgtatatATGTGTGTGTGTATGTCCATGTgtgtatatgaatATACATACACACACACATACACacacgtgcaagcacacaca
	**************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000062970 ENSRNOG00000041217 rno-mir-466b-1
rat	..(((((.(.(((((((((((((.(((...((((((((((....))))))))))...))).))))))))))))).).)))))....	1.000 -35.70

rat

chromosome:17:79291564:79291649:-1

Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Same_strand|Exonic_non-coding|ENSRNOT00000062970|ENSRNOG00000041217 ## ENSRNOG00000041217|miRNA|rno-mir-466b-1|rno-mir-466b-1 [Source:miRBase;Acc:MI0006112] ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TA)n 1 80 -1 class=Simple_repeat,RMER12 799 831 1 class=LTR/ERVK,dust 79291609 79291641 0 class=dust,ID_B1 -17 207 1 class=SINE,RMER12 834 851 1 class=LTR/ERVK,dust 79291576 79291602 0 class=dust,trf 1 17 0 class=trf} ## {MIR: rno-mir-466b-1}

miRNAknown_rep_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)

rno-mir-378

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-378 5arm	1538.867	225.667	3804.500	2498.767	1437.033	815.167	8458.200	348.500	4704.333	4748.767
rno-mir-378 3arm	4639.767	1556.533	12528.567	5486.667	5557.633	5154.400	10724.367	30014	16430.367	21865.467
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-378 5arm	0.051	0.010	0.206	0.148	0.070	0.062	0.658	0.018	0.310	0.316
rno-mir-378 3arm	0.154	0.068	0.679	0.325	0.271	0.391	0.834	1.579	1.083	1.455

sblock5505 (miRBase rno-mir-378) [miRNAknown_rep_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBase rno-mir-378

0.001

no

SINE,SINE/MIR

0.47/0.67

18/24/0.74

0.0 0.0

0.0 1.4

14342 106436

0 0

10 10

0 0

3 1

4 4

5arm 3arm

1 5

nd nd

0.18 0.11

3 1

224946

10

0

3

		reads	miRBase family seed
seed	--------------------------------------------------------------CUGGACU--------------------------------	185674	miR-378
seed	------------------------UCCUGAC----------------------------------------------------------------------	30394	miR-378*
seed	---------------------------------------------------------------UGGACUU-------------------------------	7484	novel
seed	-------------------------CCUGACU---------------------------------------------------------------------	877	novel
seed	-------------------------------------------------------------ACUGGAC---------------------------------	196	novel
seed	-----------------------CUCCUGA-----------------------------------------------------------------------	117	novel
seed	----------------------------------------------------------------GGACUUG------------------------------	59	novel
seed	------------------------------------------------------------CACUGGA----------------------------------	56	novel
seed	-----------------------------------------------------------------GACUUGG-----------------------------	50	novel
seed	--------------------------CUGACUC--------------------------------------------------------------------	29	novel
seed	------------------------------------------------------------------ACUUGGA----------------------------	4	novel
seed	-----------------------------------------------------------GCACUGG-----------------------------------	3	novel
seed	-------------------------------------------------------------------CUUGGAG---------------------------	2	novel
seed	----------------------------GACUCCA------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-------------------------------------------------------------ACTGGACTTGGAGTCAGAAG--------------------	20	1328	598	4184	3139	1836	1708	5087	14701	7004	5823
	-------------------------------------------------------------ACTGGACTTGGAGTCAGAAGGCC-----------------	23	1746	427	4657	1186	2135	2092	1486	4411	7403	8411
rno-miR-378	-------------------------------------------------------------ACTGGACTTGGAGTCAGAAGG-------------------	21	904	496	3212	2290	1364	1542	5289	8376	3628	5807
	-------------------------------------------------------------ACTGGACTTGGAGTCAGA----------------------	18	946	533	2499	1751	1344	1263	3803	9047	4323	4780
	-------------------------------------------------------------ACTGGACTTGGAGTCAGAAGGC------------------	22	1195	279	2512	519	987	480	1136	10136	1918	3579
	-------------------------------------------------------------ACTGGACTTGGAGTCAGAA---------------------	19	719	307	2271	1649	949	850	2585	5504	2799	2658
rno-miR-378*	-----------------------CTCCTGACTCCAGGTCCTGTGT--------------------------------------------------------	22	823	65	2333	1842	988	394	6414	26	2404	3191
	-----------------------CTCCTGACTCCAGGTCCTGTG---------------------------------------------------------	21	437	67	814	284	238	198	1049	89	1611	958
	-----------------------CTCCTGACTCCAGGTCCTG-----------------------------------------------------------	19	208	55	710	302	145	194	702	96	499	389
	--------------------------------------------------------------CTGGACTTGGAGTCAGAAG--------------------	19	64	33	117	52	80	78	264	612	304	461
	-----------------------CTCCTGACTCCAGGTCCT------------------------------------------------------------	18	104	110	177	125	55	56	249	444	271	119
	--------------------------------------------------------------CTGGACTTGGAGTCAGAAGGCC-----------------	22	73	19	99	21	45	87	143	318	254	489
	--------------------------------------------------------------CTGGACTTGGAGTCAGAAGG-------------------	20	38	19	76	56	79	96	169	251	117	431
	--------------------------------------------------------------CTGGACTTGGAGTCAGAAGGC------------------	21	60	15	103	54	68	51	83	401	138	293
	--------------------------------------------------------------CTGGACTTGGAGTCAGAA---------------------	18	36	15	66	59	45	68	197	376	176	227
	-----------------------CTCCTGACTCCAGGTCCTGT----------------------------------------------------------	20	76	21	142	78	49	53	280	28	215	150
	------------------------TCCTGACTCCAGGTCCTGTGT--------------------------------------------------------	21	40	2	50	75	35	30	206	3	72	120
	------------------------TCCTGACTCCAGGTCCTGTG---------------------------------------------------------	20	4	4	20	3	7	7	14	2	26	21
	-------------------------------------------------------------ACTGGACTTGGAGTCAGAAGGCCT----------------	24	-	1	10	19	12	2	2	3	12	22
	------------------------------------------------------------CACTGGACTTGGAGTCAGAAGG-------------------	22	-	-	4	8	5	4	8	10	15	10
	------------------------TCCTGACTCCAGGTCCTG-----------------------------------------------------------	18	3	-	10	7	5	3	10	-	9	7
	------------------------TCCTGACTCCAGGTCCTGTGTGT------------------------------------------------------	23	1	-	4	5	3	1	7	-	5	10
	------------------------------------------------------------CACTGGACTTGGAGTCAGA----------------------	19	2	-	4	1	4	-	6	4	11	4
	-----------------------CTCCTGACTCCAGGTCCTGTGTG-------------------------------------------------------	23	1	-	-	1	3	1	5	-	3	22
	---------------------------------------------------------------TGGACTTGGAGTCAGAAGGC------------------	20	1	-	8	2	1	-	3	9	3	5
	-----------------------CTCCTGACTCCAGGTCCTGTGTGT------------------------------------------------------	24	1	-	2	2	7	-	5	-	2	12
	----------------------GCTCCTGACTCCAGGTCCTGTGT--------------------------------------------------------	23	-	-	3	2	3	2	11	-	2	7
	------------------------TCCTGACTCCAGGTCCTGT----------------------------------------------------------	19	2	1	4	2	4	4	5	-	2	3
	------------------------------------------------------------CACTGGACTTGGAGTCAG-----------------------	18	-	-	3	1	1	2	3	5	10	2
	----------------------GCTCCTGACTCCAGGTCCTGTG---------------------------------------------------------	22	2	-	5	-	1	2	7	-	5	4
	----------------------GCTCCTGACTCCAGGTCCTGT----------------------------------------------------------	21	7	1	1	2	-	3	2	2	6	1
	------------------------------------------------------------CACTGGACTTGGAGTCAGAA---------------------	20	-	1	-	-	1	1	-	3	6	10
	---------------------------------------------------------------TGGACTTGGAGTCAGAAGG-------------------	19	1	1	5	2	-	-	4	5	2	2
	----------------------GCTCCTGACTCCAGGTCCT------------------------------------------------------------	19	1	1	5	2	-	-	2	5	5	-
	----------------------------------------------------------------GGACTTGGAGTCAGAAGGC------------------	19	-	-	7	-	1	-	2	7	-	3
	------------------------TCCTGACTCCAGGTCCTGTGTG-------------------------------------------------------	22	1	-	-	3	2	1	4	-	3	5
	------------------------------------------------------------CACTGGACTTGGAGTCAGAAG--------------------	21	-	-	1	-	1	-	5	3	2	7
	-----------------------------------------------------------GCACTGGACTTGGAGTCAGAAG--------------------	22	-	-	1	-	-	-	4	9	2	1
	----------------------------------------------------------------GGACTTGGAGTCAGAAGGCC-----------------	20	1	-	2	-	2	1	-	4	1	6
	------------------------------------------------------------CACTGGACTTGGAGTCAGAAGGC------------------	23	2	1	-	-	2	1	-	7	-	4
	-----------------------------------------------------------GCACTGGACTTGGAGTCAGAA---------------------	21	-	-	1	-	2	-	3	8	-	1
	-------------------------CCTGACTCCAGGTCCTGTGT--------------------------------------------------------	20	1	-	3	2	3	-	3	-	-	2
	----------------------------------------------------------------GGACTTGGAGTCAGAAGG-------------------	18	-	1	-	-	2	-	5	5	-	-
	-----------------------------------------------------------GCACTGGACTTGGAGTCAGA----------------------	20	-	-	3	-	-	-	5	4	1	-
	------------------------------------------------------------CACTGGACTTGGAGTCAGAAGGCC-----------------	24	-	-	1	-	-	1	-	1	4	4
	-------------------------CCTGACTCCAGGTCCTGTGTGT------------------------------------------------------	22	-	-	1	-	-	2	3	-	-	4
	----------------------GCTCCTGACTCCAGGTCC-------------------------------------------------------------	18	2	-	-	1	2	-	2	-	-	1
	--------------------------------------------------------------CTGGACTTGGAGTCAGAAGGCCT----------------	23	-	-	-	-	1	1	-	2	2	2
	----------------------GCTCCTGACTCCAGGTCCTG-----------------------------------------------------------	20	-	-	-	1	1	-	2	-	3	-
	---------------------------------------------------------------TGGACTTGGAGTCAGAAGGCC-----------------	21	-	-	1	-	-	1	-	2	1	-
	-----------------------------------------------------------GCACTGGACTTGGAGTCAG-----------------------	19	-	-	-	-	1	-	2	2	-	-
	-----------------------------------------------------------GCACTGGACTTGGAGTCA------------------------	18	-	-	1	-	-	-	-	4	-	-
	----------------------------------------------------------AGCACTGGACTTGGAGTCAG-----------------------	20	-	-	-	-	-	-	-	1	2	-
	-------------------------CCTGACTCCAGGTCCTGTG---------------------------------------------------------	19	-	-	1	-	-	-	2	-	-	-
	------------------------------------------------------------------ACTTGGAGTCAGAAGGCC-----------------	18	-	-	1	-	-	-	-	1	-	-
	-----------------------------------------------------------------GACTTGGAGTCAGAAGGC------------------	18	-	-	-	-	-	1	-	1	-	-
	-----------------------------------------------------------------GACTTGGAGTCAGAAGGCC-----------------	19	-	1	-	-	-	-	-	1	-	-
	---------------------------TGACTCCAGGTCCTGTGT--------------------------------------------------------	18	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------------GCACTGGACTTGGAGTCAGAAGG-------------------	23	-	-	-	-	-	-	-	1	-	-
	-------------------------CCTGACTCCAGGTCCTGTGTGTT-----------------------------------------------------	23	-	-	-	-	-	-	-	-	-	1
	-------------------------CCTGACTCCAGGTCCTGTGTG-------------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
rat	--------------------GGGCTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAGGCCT----------------
human	GAGGGTGACAGAGCCACCCAGGGCTCCTGACTCCAGGTCCTGTGTGTTACCTAGAAATAGCACTGGACTTGGAGTCAGAAGGCCTGAGTGGAGTCACCTTC
mouse	-----------------------CTCCTGACTCCAGGTCCTGTGTGTTACCTCGAAATAGCACTGGACTTGGAGTCAGAAG--------------------
	***************************** ****************************
	+++++                    +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++                +++++	ENSRNOT00000023661 ENSRNOG00000017503 Ppargc1b
	....>                    >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>                .....	ENSRNOT00000053640 ENSRNOG00000035517 rno-mir-378
rat	((.((.((((((((((((((...((((((........)))))).)))))))))))))).)).)).	1.000 -38.80
human	(((((((((....((((.((((.((.((((((((((((((...((((((........)))))).)))))))))))))).)).)))).)))).)))))))))	1.000 -64.20
mouse	...((((((((((((((...((((((........)))))).))))))))))))))...	1.000 -32.60

rat	chromosome:18:57377805:57377869:-1	Same_strand|Boundary_non-coding|ENSRNOT00000053640|ENSRNOG00000035517 ## Same_strand|Intronic_coding|ENSRNOT00000023661|ENSRNOG00000017503 ## Same_strand|Exonic_non-coding|ENSRNOT00000053640|ENSRNOG00000035517 ## ENSRNOG00000017503|protein_coding|Ppargc1b|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta) (PPARGC-1-beta) (PGC-1-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q811R2] ## ENSRNOG00000035517|miRNA|rno-mir-378|rno-mir-378 [Source:miRBase;Acc:MI0003719] ## {Repeats: MIR -62 146 1 class=SINE,MIR 35 79 -1 class=SINE/MIR,MIR 20 149 -1 class=SINE,MIR 24 51 1 class=SINE/MIR} ## {MIR: rno-mir-378}
human	chromosome:5:149092562:149092662:1	Same_strand|Boundary_non-coding|ENST00000403750|ENSG00000155846|protein_coding|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta)(PPARGC-1-beta)(PGC-1-beta)(PGC-1-related estrogen receptor alpha coactivator) [Source:UniProtKB/Swiss-Prot;Acc:Q86YN6] ## Same_strand|Intronic_coding|ENST00000309241|ENSG00000155846|protein_coding|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta)(PPARGC-1-beta)(PGC-1-beta)(PGC-1-related estrogen receptor alpha coactivator) [Source:UniProtKB/Swiss-Prot;Acc:Q86YN6] ## {Repeats: MIRb -1 class=SINE/MIR,MIRb 1 class=SINE/MIR} ## {SimpF: rank = 1 1 FirstEF} ## {MIR: hsa-mir-378}
mouse	chromosome:18:61557493:61557550:-1	Same_strand|Intronic_coding|ENSMUST00000063307|ENSMUSG00000033871|protein_coding|peroxisome proliferative activated receptor, gamma, coactivator 1 beta Gene [Source:MGI (curated);Acc:Ppargc1b-001] ## Same_strand|Exonic_non-coding|ENSMUST00000083601|ENSMUSG00000065535|miRNA|mmu-mir-378 [Source:miRBase;Acc:MI0000795] ## {Repeats: MIR 1 class=SINE/MIR,MIRb -1 class=SINE/MIR} ## {MIR: mmu-mir-378}

Back to summary page

other miRBase miRNAs:

Page 1

Previous page

Page 10

Page 11