other miRBase miRNAs
miRNAknown_rep_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK (1 loci)
miRNAknown_rep_cloningHIGH_multiarm_DicerOK_randfoldOK_nonpairedHIGH_bulgeHIGH (1 loci)
rno-mir-487b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-487b 5arm | 15 | 13 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| rno-mir-487b 3arm | 14918 | 10563 | 20 | 20 | 52 | 54 | 33 | 50 | 60 | 67 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-487b 5arm | 0.000 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
| rno-mir-487b 3arm | 0.496 | 0.461 | 0.001 | 0.001 | 0.003 | 0.004 | 0.003 | 0.003 | 0.004 | 0.004 |
sblock10507 (miRBase rno-mir-487b) [miRNAknown_rep_cloningHIGH_multiarm_DicerOK_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-487b | 0.001 | no | SINE/MIR | 0.40/0.56 | 18/25/0.91 | 0.6 0.5 1.0 0.0 | 1.5 2.5 2.8 0.4 | 14 2 16 16975 | 0 0 0 0 | 3 1 2 10 | 0 0 0 0 | 9 18 20 11 | 0 -6 -22 4 | 5arm 5arm_loop 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.33 0.33 0.32 | 4 2 2 4 | 25867 | 10 | 3 | 1 |
| Located in cluster 73: rno-mir-381, rno-mir-381, rno-mir-487b, rno-mir-539 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------AUCGUAC------------------------------------------- | 22913 | miR-487b | |||||||||
| seed | -----------------------------------------------------------------------UCGUACA------------------------------------------ | 2799 | novel | |||||||||
| seed | ------------------------------------------------------------------------CGUACAG----------------------------------------- | 99 | novel | |||||||||
| seed | -------------------------------------------------------------------------GUACAGG---------------------------------------- | 15 | novel | |||||||||
| seed | -------------------------------------------------------CUUCACU---------------------------------------------------------- | 14 | novel | |||||||||
| seed | ----------------------------------UGGUUAU------------------------------------------------------------------------------- | 8 | novel | |||||||||
| seed | --------------------------------------------------------------------------UACAGGG--------------------------------------- | 7 | novel | |||||||||
| seed | ---------------------------------GUGGUUA-------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | ---------------------------------------------------------------AUGCCGA-------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------------AAUCGUA-------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------AGAGUGG----------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------AUCCCUG-------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------UCCCUGU------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------GGUUAUC------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCACTT----------------------------- | 22 | 7114 | 5086 | 6 | 8 | 18 | 21 | 17 | 30 | 23 | 33 | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCAC------------------------------- | 20 | 2388 | 1768 | 5 | 6 | 8 | 8 | 6 | 2 | 4 | 6 | |
| rno-miR-487b | ---------------------------------------------------------------------AATCGTACAGGGTCATCCACT------------------------------ | 21 | 2387 | 1644 | 3 | 4 | 11 | 9 | 2 | 6 | 12 | 11 |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCACTT----------------------------- | 21 | 602 | 394 | 1 | - | 3 | 4 | 5 | 3 | 4 | 2 | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCC--------------------------------- | 18 | 599 | 330 | - | - | 1 | 3 | 1 | 3 | 2 | 3 | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCACTTT---------------------------- | 23 | 445 | 296 | - | 2 | 2 | 2 | 1 | 3 | 4 | 6 | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCACTTT---------------------------- | 22 | 316 | 227 | - | - | 2 | 1 | 1 | 1 | 4 | 1 | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCACT------------------------------ | 20 | 304 | 240 | 1 | - | - | 3 | - | 2 | 1 | - | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCAC------------------------------- | 19 | 315 | 222 | 1 | - | 3 | 1 | - | - | 2 | 2 | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCA-------------------------------- | 19 | 296 | 240 | 1 | - | 1 | 2 | - | - | 2 | 3 | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCA-------------------------------- | 18 | 57 | 42 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCACTT----------------------------- | 20 | 15 | 13 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCACTTTT--------------------------- | 23 | 16 | 11 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCACT------------------------------ | 19 | 14 | 12 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCACTTT---------------------------- | 21 | 12 | 6 | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCAC------------------------------- | 18 | 7 | 9 | 1 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCACTTTT--------------------------- | 24 | 11 | 4 | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------CGTACAGGGTCATCCACTT----------------------------- | 19 | 4 | 7 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------GTACAGGGTCATCCACTT----------------------------- | 18 | 1 | 6 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------GCTTCACTTATGCCGAATC----------------------------------------------- | 19 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------GCTTCACTTATGCCGAATCGTAC------------------------------------------- | 23 | 3 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------GTGGTTATCCCTGTCCTCTTC------------------------------------------------------------------ | 21 | 2 | - | - | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------------------ATCGTACAGGGTCATCCACTTTTTC------------------------- | 25 | 4 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------AATCGTACAGGGTCATCCACTTTTT-------------------------- | 25 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCACTTTT--------------------------- | 22 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------CGTACAGGGTCATCCACT------------------------------ | 18 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------GTGGTTATCCCTGTCCTCT-------------------------------------------------------------------- | 19 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------TCGTACAGGGTCATCCACTTTTTC------------------------- | 24 | 3 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------GCTTCACTTATGCCGAAT------------------------------------------------ | 18 | - | 2 | - | - | - | - | - | - | - | - | |
| --------------------------------AGTGGTTATCCCTGTCCTCTTCGC---------------------------------------------------------------- | 24 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------ATCCCTGTCCTCTTCGCT--------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------TGGTTATCCCTGTCCTCT-------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------AGTGGTTATCCCTGTCCTC--------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------AGTGGTTATCCCTGTCCTCTTC------------------------------------------------------------------ | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------TATGCCGAATCGTACAGGGT-------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------GCTTCACTTATGCCGAATCGTACA------------------------------------------ | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------TATGCCGAATCGTACAGG---------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------GAATCGTACAGGGTCATCCACTTT---------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------GTGGTTATCCCTGTCCTC--------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------TATCCCTGTCCTCTTCGCTTCACT---------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------GAATCGTACAGGGTCATCCACTT----------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------------CGTACAGGGTCATCCACTTT---------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------GCTTCACTTATGCCGAATCGT--------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------GAGAGTGGTTATCCCTGTCCTC--------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | --------------------TGGTACTTGGAGAGTGGTTATCCCTGTCCTCTTCGCTTCACTTATGCCGAATCGTACAGGGTCATCCACTTTTTCAGTATCA------------------ | |||||||||||
| human | TTCTTTTCCGTGCTAACCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTGTTCGTTTTGCTCATGTCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGAGCGCAGACTCTGGAG | |||||||||||
| mouse | ----------GGCCGAGCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTCTTCGCTTCACTCATGCCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGTGC------------- | |||||||||||
| ****************************** **** ** ** *** *********************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054597 ENSRNOG00000036489 rno-mir-487b | |||||||||||
| rat | .((((((..((((((((....((((((.(..(((((.........).))))..).))))))....))))))))..)))))). | 1.000 -32.20 | ||||||||||
| human | .(((..((.(((((....(((((((((..((((((((....((((((...(((((....((....)))))))...))))))....))))))))..)))))))))))))).))....))). | 0.995 -42.70 | ||||||||||
| mouse | ......(((((((((((..((((((((....((((((....(((((.........)).)))....))))))....))))))))..))))))))).)) | 0.986 -35.20 | ||||||||||
| rat | chromosome:6:134408209:134408290:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054597|ENSRNOG00000036489 ## ENSRNOG00000036489|miRNA|rno-mir-487b|rno-mir-487b [Source:miRBase;Acc:MI0003547] ## {MIR: rno-mir-487b} |
| human | chromosome:14:100582526:100582645:1 | Same_strand|Boundary_non-coding|ENST00000385021|ENSG00000207754|miRNA|hsa-mir-487b [Source:miRBase;Acc:MI0003530] ## {Repeats: MIR 1 class=SINE/MIR} ## {MIR: hsa-mir-487b} |
| mouse | chromosome:12:110965533:110965629:1 | Same_strand|Boundary_non-coding|ENSMUST00000102265|ENSMUSG00000076219|miRNA|mmu-mir-487b [Source:miRBase;Acc:MI0003534] ## {Repeats: MIR 1 class=SINE/MIR} ## {MIR: mmu-mir-487b} |
miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK (1 loci)
rno-mir-99b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-99b 5arm | 2696 | 1486 | 183 | 285 | 680 | 392 | 812 | 1450 | 1537 | 1951 |
| rno-mir-99b 3arm | 251 | 482 | 50 | 44 | 118 | 104 | 162 | 71 | 212 | 110 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-99b 5arm | 0.090 | 0.065 | 0.010 | 0.017 | 0.033 | 0.030 | 0.063 | 0.076 | 0.101 | 0.130 |
| rno-mir-99b 3arm | 0.008 | 0.021 | 0.003 | 0.003 | 0.006 | 0.008 | 0.013 | 0.004 | 0.014 | 0.007 |
sblock1727 (miRBase rno-mir-99b) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-99b | 0.042 | no | Satellite | 0.56/0.67 | 18/26/0.53 | 0.0 0.0 | 1.5 0.9 | 8562 714 | 0 0 | 10 10 | 0 0 | 6 3 | 5 8 | 5arm 3arm | 1 1 | nd nd | 0.16 0.17 | 2 2 | 13076 | 10 | 1 | 3 |
| Located in cluster 7: rno-mir-99b, rno-let-7e, rno-mir-125a |
| Member of family miR-100/99a/99b (seed ACCCGUA): rno-mir-100, rno-mir-99a, rno-mir-99b |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------ACCCGUA---------------------------------------------------------------------------- | 11376 | miR-100/99a/99b | |||||||||
| seed | -----------------------------------------------------------------AAGCUCG-------------------------------------- | 1586 | miR-99a*/99b* | |||||||||
| seed | ----------------------------CCCGUAG--------------------------------------------------------------------------- | 75 | novel | |||||||||
| seed | ------------------------------------------------------------------AGCUCGU------------------------------------- | 14 | novel | |||||||||
| seed | -----------------------------CCGUAGA-------------------------------------------------------------------------- | 11 | novel | |||||||||
| seed | --------------------------CACCCGU----------------------------------------------------------------------------- | 8 | novel | |||||||||
| seed | ---------------------------------------------------------------------UCGUGUC---------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------CGUAGAA------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------------CUCGUGU----------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------CACCCGTAGAACCGACCTTGC--------------------------------------------------------------- | 21 | 841 | 274 | 55 | 80 | 246 | 117 | 262 | 430 | 475 | 557 | |
| --------------------------CACCCGTAGAACCGACCTT----------------------------------------------------------------- | 19 | 682 | 722 | 35 | 65 | 138 | 102 | 149 | 306 | 293 | 363 | |
| --------------------------CACCCGTAGAACCGACCT------------------------------------------------------------------ | 18 | 679 | 332 | 51 | 71 | 134 | 107 | 172 | 374 | 349 | 496 | |
| --------------------------CACCCGTAGAACCGACCTTG---------------------------------------------------------------- | 20 | 437 | 137 | 37 | 48 | 131 | 54 | 167 | 242 | 305 | 385 | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTC-------------------------- | 20 | 96 | 155 | 18 | 18 | 42 | 35 | 58 | 18 | 83 | 39 | |
| rno-miR-99b | --------------------------CACCCGTAGAACCGACCTTGCG-------------------------------------------------------------- | 22 | 32 | 9 | 3 | 19 | 24 | 7 | 56 | 84 | 103 | 134 |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGG---------------------------- | 18 | 48 | 82 | 6 | 2 | 16 | 18 | 28 | 12 | 20 | 22 | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCC------------------------- | 21 | 31 | 67 | 12 | 7 | 18 | 22 | 25 | 8 | 24 | 15 | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCCGT----------------------- | 23 | 22 | 70 | 4 | 8 | 16 | 10 | 19 | 4 | 21 | 8 | |
| rno-miR-99b* | ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCCG------------------------ | 22 | 31 | 55 | 6 | 4 | 11 | 10 | 22 | 7 | 13 | 14 |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGT--------------------------- | 19 | 22 | 41 | 4 | 5 | 12 | 6 | 8 | 20 | 45 | 9 | |
| ---------------------------ACCCGTAGAACCGACCTTGC--------------------------------------------------------------- | 20 | 8 | 4 | - | - | 1 | 4 | 4 | 4 | 2 | 1 | |
| ---------------------------ACCCGTAGAACCGACCTT----------------------------------------------------------------- | 18 | 5 | 3 | 1 | 1 | - | - | 1 | 2 | 3 | 4 | |
| ---------------------------ACCCGTAGAACCGACCTTG---------------------------------------------------------------- | 19 | 3 | 2 | 1 | - | 2 | 1 | - | 3 | 2 | 3 | |
| ---------------------------ACCCGTAGAACCGACCTTGCG-------------------------------------------------------------- | 21 | 3 | - | - | - | 2 | - | - | 3 | 1 | 1 | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCCGTG---------------------- | 24 | - | 4 | - | - | 2 | 2 | 1 | - | 1 | - | |
| ----------------------------CCCGTAGAACCGACCTTGC--------------------------------------------------------------- | 19 | 2 | 1 | - | 1 | - | - | 1 | 1 | - | 3 | |
| --------------------------CACCCGTAGAACCGACCTTGCGG------------------------------------------------------------- | 23 | 1 | - | - | - | 1 | - | - | - | 2 | 1 | |
| -------------------------CCACCCGTAGAACCGACCTTGC--------------------------------------------------------------- | 22 | 2 | - | - | - | - | - | - | - | 1 | 1 | |
| -----------------------------------------------------------------AAGCTCGTGTCTGTGGGTC-------------------------- | 19 | - | 2 | - | - | - | - | - | - | 2 | - | |
| -------------------------CCACCCGTAGAACCGACC------------------------------------------------------------------- | 18 | - | 2 | - | - | 1 | - | - | - | - | 1 | |
| -----------------------------------------------------------------AAGCTCGTGTCTGTGGGTCCG------------------------ | 21 | - | - | - | - | - | 1 | - | 2 | - | - | |
| --------------------------------------------------------------------CTCGTGTCTGTGGGTCCGT----------------------- | 19 | - | - | - | - | - | - | 1 | - | - | 2 | |
| -----------------------------------------------------------------AAGCTCGTGTCTGTGGGTCC------------------------- | 20 | - | 1 | - | - | 1 | - | - | - | 1 | - | |
| -----------------------------------------------------------------AAGCTCGTGTCTGTGGGT--------------------------- | 18 | 1 | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------AAGCTCGTGTCTGTGGGTCCGT----------------------- | 22 | - | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCCGTGT--------------------- | 25 | - | 1 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------CAAGCTCGTGTCTGTGGGTCCGTGTC-------------------- | 26 | - | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------CCCGTAGAACCGACCTTGCG-------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------------CCCGTAGAACCGACCTTG---------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CCGTAGAACCGACCTTGCG-------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------------------CCGTAGAACCGACCTTGC--------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------GCTCGTGTCTGTGGGTCC------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | --------------------GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC-------------------- | |||||||||||
| human | GGCCCGGACTCCTGGGTCCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTCGGGGGCTCACCATCGCGGCT | |||||||||||
| mouse | GGCCCGGACTCCTGGGTCCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTCGGGGGCTCACCATCGCGGCT | |||||||||||
| ********************************************************************** | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053777 ENSRNOG00000035654 rno-mir-99b | |||||||||||
| rat | (((((..(((((((((..(((.((((.(((((....))).).).)))).)))..)))))))))..))))) | 1.000 -30.00 | ||||||||||
| human | (((((((.....(((((((((((((..(((((((((..(((.(((((((........)))))....)).)))..)))))))))..))))))))).))))...))).)))) | 0.919 -47.70 | ||||||||||
| mouse | (((((((.....(((((((((((((..(((((((((..(((.(((((((........)))))....)).)))..)))))))))..))))))))).))))...))).)))) | 0.919 -47.70 | ||||||||||
| rat | chromosome:1:56486969:56487038:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053777|ENSRNOG00000035654 ## ENSRNOG00000035654|miRNA|rno-mir-99b|rno-mir-99b [Source:miRBase;Acc:MI0000884] ## {MIR: rno-mir-99b} |
| human | chromosome:19:56887657:56887766:1 | Same_strand|Boundary_non-coding|ENST00000384819|ENSG00000207550|miRNA|hsa-mir-99b [Source:miRBase;Acc:MI0000746] ## {Repeats: MSR1 -1 class=Satellite,trf 0 class=trf} ## {MIR: hsa-mir-99b} |
| mouse | chromosome:17:17967132:17967241:1 | Same_strand|Boundary_non-coding|ENSMUST00000083462|ENSMUSG00000065396|miRNA|mmu-mir-99b [Source:miRBase;Acc:MI0000147] ## {MIR: mmu-mir-99b} |
miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK (1 loci)
rno-mir-541
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-541 5arm | 3958 | 2952 | 42 | 9 | 35 | 77 | 41 | 28 | 164 | 182 |
| rno-mir-541 3arm | 323 | 279 | 13 | 6 | 9 | 11 | 9 | 6 | 10 | 27 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-541 5arm | 0.132 | 0.129 | 0.002 | 0.001 | 0.002 | 0.006 | 0.003 | 0.001 | 0.011 | 0.012 |
| rno-mir-541 3arm | 0.011 | 0.012 | 0.001 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.001 | 0.002 |
sblock10518 (miRBase rno-mir-541) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-541 | 0.001 | no | DNA/MER1_type,DNA/MER2_type,SINE/Alu | 0.42/0.53 | 18/26/0.55 | 0.0 0.6 | 2.1 1.5 | 5370 453 | 0 0 | 10 10 | 0 0 | 13 10 | -2 1 | 5arm_loop 3arm | 1 1 | nd nd | 0.21 0.15 | 2 2 | 8181 | 10 | 3 | 3 |
| Located in cluster 76: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369, rno-mir-410 |
| Member of family miR-541 (seed AGGGAUU): rno-mir-541, rno-mir-145 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------AGGGAUU------------------------------------------------------------------------------------------------ | 7451 | miR-541 | |||||||||
| seed | --------------------------------------------------------------------------------------GUGGCGA-------------------------------------------- | 473 | novel | |||||||||
| seed | ----------------------------------------------------------------------------------------GGCGAAC------------------------------------------ | 213 | novel | |||||||||
| seed | -----------------------------------GGGAUUC----------------------------------------------------------------------------------------------- | 34 | novel | |||||||||
| seed | ---------------------------------------------------------------------------------------UGGCGAA------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------------------------------------------------------------------------------GCGAACA----------------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------------------UUCUGAU------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------------------------------------------------------------GAGUGGC---------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------AAGGGAU------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------AAGGGATTCTGATGTT----------GGTCACAC---------------------------------------------------------------------- | 24 | 1174 | 820 | 5 | 1 | 5 | 15 | 12 | 7 | 45 | 58 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGTCACACTC-------------------------------------------------------------------- | 26 | 857 | 748 | 2 | 1 | 2 | 4 | 5 | 5 | 42 | 23 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGT--------------------------------------------------------------------------- | 19 | 462 | 383 | 4 | 1 | 4 | 17 | - | 7 | 20 | 17 | |
| ---------------------------------AAGGGATTCTGATGTT----------GG---------------------------------------------------------------------------- | 18 | 483 | 312 | 10 | 2 | 9 | 13 | 8 | 1 | 24 | 31 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGTCAC------------------------------------------------------------------------ | 22 | 443 | 293 | 10 | 1 | 6 | 11 | 7 | 4 | 11 | 28 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGTC-------------------------------------------------------------------------- | 20 | 236 | 182 | 2 | - | 3 | 4 | 2 | 1 | 12 | 6 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGTCACA----------------------------------------------------------------------- | 23 | 149 | 101 | 3 | 2 | 1 | 5 | 2 | - | 7 | 13 | |
| ---------------------------------AAGGGATTCTGATGTT----------GGTCA------------------------------------------------------------------------- | 21 | 120 | 95 | 6 | 1 | 5 | 8 | 3 | 1 | 3 | 5 | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCCATAC----------------------------- | 23 | 76 | 72 | 1 | 1 | 2 | 5 | 1 | - | 4 | 14 | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCCAT------------------------------- | 21 | 64 | 50 | 2 | 1 | 4 | 2 | 2 | 1 | - | 4 | |
| ---------------------------------------------------------------------------------------TGGCGAACACAGAATCCATACTC--------------------------- | 23 | 61 | 41 | 1 | - | - | - | - | 1 | 1 | - | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCCA-------------------------------- | 20 | 37 | 27 | 6 | 2 | 2 | 2 | 1 | 2 | 3 | 4 | |
| ---------------------------------------------------------------------------------------TGGCGAACACAGAATCCA-------------------------------- | 18 | 18 | 25 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------------------TGGCGAACACAGAATCCATAC----------------------------- | 21 | 21 | 18 | 1 | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCC--------------------------------- | 19 | 15 | 18 | 1 | 2 | - | - | 3 | - | - | 1 | |
| rno-miR-541 | ---------------------------------AAGGGATTCTGATGTT----------GGTCACACT--------------------------------------------------------------------- | 25 | 10 | 9 | - | - | - | - | - | - | - | 1 |
| ---------------------------------------------------------------------------------------TGGCGAACACAGAATCCAT------------------------------- | 19 | 11 | 8 | - | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCCATACTC--------------------------- | 25 | 10 | 7 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATCCATA------------------------------ | 22 | 1 | 6 | 1 | - | - | 2 | 2 | - | - | 3 | |
| ----------------------------------AGGGATTCTGATGTT----------GGTCACACTC-------------------------------------------------------------------- | 25 | 12 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------------AGTGGCGAACACAGAATC---------------------------------- | 18 | 4 | 3 | - | - | - | - | - | 1 | - | - | |
| ----------------------------------AGGGATTCTGATGTT----------GGT--------------------------------------------------------------------------- | 18 | 2 | 2 | - | - | - | - | 1 | - | - | - | |
| ----------------------------------AGGGATTCTGATGTT----------GGTCAC------------------------------------------------------------------------ | 21 | 3 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGGGATTCTGATGTT----------GGTCACAC---------------------------------------------------------------------- | 23 | 2 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------------------------TGGCGAACACAGAATCCATACT---------------------------- | 22 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGGGATTCTGATGTT----------GGTCACA----------------------------------------------------------------------- | 22 | 2 | - | - | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------------------------------GGCGAACACAGAATCCATAC----------------------------- | 20 | 2 | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------ATTCTGATGTT----------GGTCACACTCC------------------------------------------------------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------AGGGATTCTGATGTT----------GGTCACACT--------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 2 | - | - | |
| --------------------------------------------------------------------------------------GTGGCGAACACAGAATCCATACTC--------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------------------AGGGATTCTGATGTT----------GGTC-------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------------------TGAGTGGCGAACACAGAATCC--------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------GAAGGGATTCTGATGTT----------GG---------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------------------------GTGGCGAACACAGAATCCATAC----------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | --------------------GCCAAAATCAGAGAAGGGATTCTGATGTT----------GGTCACACTCCAAGAATTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGC----------------- | |||||||||||
| human | ---------------------------------AAGGGATTCTGATGTTCACCTACTAGAACCACCTACTAAAACCACCTACACAGGTTGAGCATTCCTAATCCAAA------------------------------ | |||||||||||
| mouse | AGAAGCCTGTGTGAACTCTTGCCAAAATCAGAGAAGGGATTCTGATGTT----------GGTCACACTCCAAGAGTTTTAAAATGAGTGGCGAACACAGAATCCATACTCTGCTTATGGCCTAAGTCAATGGATCCT | |||||||||||
| **************** *** * ** * * * ** * * * * ****** * | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054594 ENSRNOG00000036486 rno-mir-541 | |||||||||||
| rat | ((((.((.(((((...((((((((.(((( .(((((.(.................).))))).))))))))))))...))))).)).)))) | 1.000 -36.43 | ||||||||||
| human | ...(((((..(((((((((((..(((...................)))...)))).)))))))...)))))... | 0.533 -15.61 | ||||||||||
| mouse | .....((....((.(((...((((.((.(((((...((((((((.(((( .(((((((((...))))..........))))).))))))))))))...))))).)).))))...)))))..))..... | 0.966 -42.50 | ||||||||||
| rat | chromosome:6:134423740:134423829:1 | Same_strand|Exonic_non-coding|ENSRNOT00000054594|ENSRNOG00000036486 ## ENSRNOG00000036486|miRNA|rno-mir-541|rno-mir-541 [Source:miRBase;Acc:MI0003527] ## {MIR: rno-mir-541} |
| human | chromosome:2:36085568:36085697:1 | intergenic ## {Repeats: AluJo -1 class=SINE/Alu,MER5B 1 class=DNA/MER1_type,trf 0 class=trf,Tigger4(Zombi) 1 class=DNA/MER2_type} |
| mouse | chromosome:12:110980599:110980725:1 | Same_strand|Boundary_non-coding|ENSMUST00000102097|ENSMUSG00000076052|miRNA|mmu-mir-541 [Source:miRBase;Acc:MI0003521] ## {MIR: mmu-mir-541} |
miRNAknown_shortStem_randfoldOK (1 loci)
block2066459 (miRBase rno-mir-381) [miRNAknown_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-381 | 0.001 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 31 | 3arm | 1 | nd | 0.30 | 3 | 1 | 1 | na | na |
| Located in cluster 73: rno-mir-381, rno-mir-381, rno-mir-487b, rno-mir-539 |
| Member of family miR-381 (seed AUACAAG): rno-mir-381, rno-mir-381 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------AGCAUCA------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------------------------------------------GAGCATCAAACCTTATCTTG- | 20 | 1 | |
| rat | ccatgctattgtttggtacttaaagcgaggttgccctttgtatattcggtttattgacatgggatatacaagggcaagctctctgtGAGCATCAAACCTTATCTTGg | ||
| *********************************************************************************************************** | |||
| ............................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................ | ENSRNOT00000053616 ENSRNOG00000035493 rno-mir-381 | ||
| rat | (((...((..(((((((.((((.((.(((.((((((.((((((((((.(((....)))...)))))))))))))))).))).)).)))).)))))))..))...))) | 1.000 -42.40 |
| rat | chromosome:6:134407677:134407783:1 | intergenic ## {MIR: rno-mir-381} |
| Back to summary page | other miRBase miRNAs: | Page 1 | Previous page | Page 11 |
©2008 InteRNA Genomics B.V.