other miRBase miRNAs
miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (47 loci)
sblock7870 (miRBase rno-mir-181b-2) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-181b-2 | 0.001 | no | no | 0.37/0.56 | 18/26/0.53 | 0.0 0.3 | 1.5 1.1 | 14600 49 | 0 0 | 10 10 | 0 0 | 14 13 | 2 5 | 5arm 3arm | 2 2 | nd nd | 0.17 0.06 | 3 1 | 32252 | 10 | 0 | 3 |
| Located in cluster 48: rno-mir-181a, rno-mir-181b |
| Member of family miR-181a/181b/181c/181d (seed ACAUUCA): rno-mir-181b, rno-mir-181c, rno-mir-181d, rno-mir-181a, rno-mir-181a, rno-mir-181b |
| reads | miRBase family seed | |||||||||||
| seed | ---------------ACAUUCA----------------------------------------------------------------------------- | 31801 | miR-181a/181b/181c/181d | |||||||||
| seed | ----------------CAUUCAU---------------------------------------------------------------------------- | 349 | novel | |||||||||
| seed | -----------------------------------------------------UCACUGG--------------------------------------- | 47 | novel | |||||||||
| seed | ----------------------------------------------------CUCACUG---------------------------------------- | 13 | novel | |||||||||
| seed | ---------------------------------------------------ACUCACU----------------------------------------- | 12 | novel | |||||||||
| seed | --------------AACAUUC------------------------------------------------------------------------------ | 11 | miR-543* | |||||||||
| seed | --------------------------------------------------AACUCAC------------------------------------------ | 5 | novel | |||||||||
| seed | ------------------------------------------------------CACUGGU-------------------------------------- | 5 | novel | |||||||||
| seed | -----------------AUUCAUU--------------------------------------------------------------------------- | 3 | miR-664 | |||||||||
| seed | -------------CAACAUU------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------AUUGCUG----------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -------------------UCAUUGC------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ------------------UUCAUUG-------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------AACATTCATTGCTGTCGGT------------------------------------------------------------------ | 19 | 3389 | 1946 | 70 | 103 | 1010 | 491 | 248 | 530 | 693 | 421 | |
| --------------AACATTCATTGCTGTCGG------------------------------------------------------------------- | 18 | 2307 | 1217 | 39 | 56 | 540 | 234 | 194 | 347 | 287 | 247 | |
| rno-miR-181b | --------------AACATTCATTGCTGTCGGTGGGT-------------------------------------------------------------- | 23 | 1763 | 792 | 29 | 76 | 400 | 190 | 231 | 353 | 341 | 334 |
| --------------AACATTCATTGCTGTCGGTG----------------------------------------------------------------- | 20 | 1704 | 856 | 32 | 51 | 467 | 235 | 191 | 256 | 243 | 233 | |
| --------------AACATTCATTGCTGTCGGTGGG--------------------------------------------------------------- | 22 | 1236 | 610 | 17 | 35 | 265 | 131 | 152 | 188 | 238 | 173 | |
| --------------AACATTCATTGCTGTCGGTGGGTT------------------------------------------------------------- | 24 | 1038 | 519 | 16 | 61 | 240 | 163 | 142 | 218 | 211 | 235 | |
| --------------AACATTCATTGCTGTCGGTGG---------------------------------------------------------------- | 21 | 846 | 487 | 13 | 31 | 244 | 76 | 109 | 130 | 139 | 113 | |
| --------------AACATTCATTGCTGTCGGTGGGTTT------------------------------------------------------------ | 25 | 167 | 89 | 3 | 7 | 60 | 32 | 51 | 39 | 35 | 50 | |
| ---------------ACATTCATTGCTGTCGGTGGGT-------------------------------------------------------------- | 22 | 14 | 12 | - | - | 11 | 2 | - | 10 | 13 | 1 | |
| ---------------ACATTCATTGCTGTCGGT------------------------------------------------------------------ | 18 | 25 | 9 | 2 | 1 | 9 | 4 | 2 | 2 | 3 | 3 | |
| ---------------ACATTCATTGCTGTCGGTG----------------------------------------------------------------- | 19 | 19 | 10 | - | 1 | 6 | 4 | 2 | 6 | 3 | 4 | |
| ---------------ACATTCATTGCTGTCGGTGGG--------------------------------------------------------------- | 21 | 20 | 4 | - | - | 3 | 3 | 7 | 4 | 4 | 4 | |
| ---------------ACATTCATTGCTGTCGGTGGGTT------------------------------------------------------------- | 23 | 16 | 9 | - | 1 | 4 | 3 | 5 | 5 | 1 | 4 | |
| --------------AACATTCATTGCTGTCGGTGGGTTTG----------------------------------------------------------- | 26 | 7 | 6 | 1 | 3 | 10 | 7 | - | 2 | 3 | 7 | |
| ---------------ACATTCATTGCTGTCGGTGG---------------------------------------------------------------- | 20 | 18 | 8 | 1 | 2 | 5 | 5 | 3 | 1 | - | 1 | |
| ---------------ACATTCATTGCTGTCGGTGGGTTT------------------------------------------------------------ | 24 | 7 | 2 | - | - | 2 | - | 5 | 5 | 5 | - | |
| ----------------------------------------------------CTCACTGGTCAATGAATGC---------------------------- | 19 | 4 | 1 | - | 1 | 1 | 6 | - | - | 1 | 3 | |
| ----------------------------------------------------CTCACTGGTCAATGAATGCAA-------------------------- | 21 | 4 | - | 2 | - | 1 | - | 2 | - | 2 | - | |
| ----------------------------------------------------CTCACTGGTCAATGAATGCA--------------------------- | 20 | - | - | - | - | 1 | - | 2 | - | 5 | - | |
| ----------------------------------------------------CTCACTGGTCAATGAATG----------------------------- | 18 | - | - | 4 | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------ACTCACTGGTCAATGAATGCA--------------------------- | 21 | 3 | - | 1 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------AACTCACTGGTCAATGAATGC---------------------------- | 21 | - | - | - | - | 3 | - | 1 | - | - | - | |
| -------------CAACATTCATTGCTGTCGG------------------------------------------------------------------- | 19 | 2 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------CTCACTGGTCAATGAATGCAAAC------------------------ | 23 | 1 | - | - | - | - | - | 3 | - | - | - | |
| --------------------------------------------------AACTCACTGGTCAATGAA------------------------------- | 18 | 1 | - | - | - | 1 | - | 2 | - | - | - | |
| ---------------ACATTCATTGCTGTCGGTGGGTTTG----------------------------------------------------------- | 25 | 1 | 1 | - | - | 1 | - | 1 | - | - | - | |
| ---------------------------------------------------ACTCACTGGTCAATGAAT------------------------------ | 18 | - | - | 1 | - | 1 | - | 1 | - | - | - | |
| -------------CAACATTCATTGCTGTCG-------------------------------------------------------------------- | 18 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------ACTCACTGGTCAATGAATGC---------------------------- | 20 | - | 1 | - | - | - | - | 2 | - | - | - | |
| -----------------------------------------------------TCACTGGTCAATGAATGC---------------------------- | 18 | - | - | - | - | - | - | - | 2 | - | 1 | |
| ----------------------------------------------------CTCACTGGTCAATGAATGCAAA------------------------- | 22 | 1 | - | - | - | 1 | - | - | - | - | - | |
| ------------TCAACATTCATTGCTGTC--------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | 1 | - | |
| --------------------CATTGCTGTCGGTGGGTTT------------------------------------------------------------ | 19 | 1 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------ACTCACTGGTCAATGAATGCAA-------------------------- | 22 | 1 | - | - | - | - | - | - | - | 1 | - | |
| ----------------CATTCATTGCTGTCGGTGG---------------------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------CAACTCACTGGTCAATGAA------------------------------- | 19 | 1 | - | - | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------TCACTGGTCAATGAATGCA--------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------CAACATTCATTGCTGTCGGTG----------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------AACTCACTGGTCAATGAATG----------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| ----------------CATTCATTGCTGTCGGTGGGTT------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------AACTCACTGGTCAATGAAT------------------------------ | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------CAACTCACTGGTCAATGAATGC---------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------CAACATTCATTGCTGTCGGTGGG--------------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------CAACTCACTGGTCAATGAATGCA--------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------TCACTGGTCAATGAATGCAAA------------------------- | 21 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------AACTCACTGGTCAATGAATGCA--------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------CAACTCACTGGTCAATGAAT------------------------------ | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------CAACATTCATTGCTGTCGGT------------------------------------------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| -------------CAACATTCATTGCTGTCGGTGGGT-------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------TTCATTGCTGTCGGTGGG--------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------AACTCACTGGTCAATGAATGCAA-------------------------- | 23 | - | - | - | - | - | - | 1 | - | - | - | |
| -----------------ATTCATTGCTGTCGGTGGGT-------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| rat | TGATGGCTGCACTCAACATTCATTGCTGTCGGTGGGTTTGAATGTCAACCAACTCACTGGTCAATGAATGCAAACTGCGGGCCAAAAA----------- | |||||||||||
| human | ---TGGCTGCACTCAACATTCATTGCTGTCGGTGGGTTTGAGTCTGAATCAACTCACTGATCAATGAATGCAAACTGCGGACCA--------------- | |||||||||||
| mouse | ---TGGCTGCACTCAACATTCATTGCTGTCGGTGGGTTTGAATGTCAACCAACTCACTGATCAATGAATGCAAACTGCGGGCCAAAAAACGCAAAGAAA | |||||||||||
| ************************************** * * ** ********** ******************** *** | ||||||||||||
| --------------------------------------------------------------------------------------------- ----- | ENSRNOT00000059783 ENSRNOG00000013232 Nr6a1 | |||||||||||
| --------------------------------------------------------------------------------------------- ----- | ENSRNOT00000018751 ENSRNOG00000013232 Nr6a1 | |||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053686 ENSRNOG00000035563 rno-mir-181b-2 | |||||||||||
| rat | ...((((((((.....(((((((((...((((((((((((.....))...)))))))))).))))))))).....))).))))).... | 1.000 -31.10 | ||||||||||
| human | .(((((((.....(((((((((..(((((((((.((((.......)))))))))))))))))))))).....))))).)). | 1.000 -34.00 | ||||||||||
| mouse | ((((((((.....(((((((((..(((((((((((((.....)))...))))))))))))))))))).....))))).)))............... | 1.000 -33.20 | ||||||||||
| rat | chromosome:3:18652007:18652094:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053686|ENSRNOG00000035563 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059783|ENSRNOG00000013232 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059782|ENSRNOG00000013232 ## Opposite_strand|Intronic_coding|ENSRNOT00000018751|ENSRNOG00000013232 ## ENSRNOG00000013232|protein_coding|Nr6a1|Germ cell nuclear factor (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q6EUW0] ## ENSRNOG00000035563|miRNA|rno-mir-181b-2|rno-mir-181b-2 [Source:miRBase;Acc:MI0000927] ## {MIR: rno-mir-181b-2} |
| human | chromosome:9:126495814:126495894:1 | Opposite_strand|Intronic_coding|ENST00000344523|ENSG00000148200|protein_coding|Nuclear receptor subfamily 6 group A member 1 (Germ cell nuclear factor)(GCNF)(hGCNF)(Retinoid receptor-related testis-specific receptor)(RTR)(hRTR) [Source:UniProtKB/Swiss-Prot;Acc:Q15406] ## Same_strand|Exonic_non-coding|ENST00000385004|ENSG00000207737|miRNA|hsa-mir-181b-2 [Source:miRBase;Acc:MI0000683] ## {MIR: hsa-mir-181b-2} |
| mouse | chromosome:2:38709354:38709449:1 | Opposite_strand|Intronic_coding|ENSMUST00000112875|ENSMUSG00000063972|protein_coding|nuclear receptor subfamily 6, group A, member 1 Gene [Source:MGI (curated);Acc:Nr6a1-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000112876|ENSMUSG00000063972|protein_coding|nuclear receptor subfamily 6, group A, member 1 Gene [Source:MGI (curated);Acc:Nr6a1-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083644|ENSMUSG00000065578|miRNA|mmu-mir-181b-2 [Source:miRBase;Acc:MI0000823] ## {MIR: mmu-mir-181b-2} |
rno-mir-10b
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-10b 5arm | 119 | 91 | 199 | 88 | 2156 | 1010 | 151 | 160 | 14838 | 17824 |
| rno-mir-10b 3arm | 3 | 0 | 1 | 1 | 9 | 12 | 0 | 2 | 214 | 217 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-10b 5arm | 0.004 | 0.004 | 0.011 | 0.005 | 0.105 | 0.077 | 0.012 | 0.008 | 0.978 | 1.186 |
| rno-mir-10b 3arm | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.001 | 0 | 0.000 | 0.014 | 0.014 |
sblock7901 (miRBase rno-mir-10b) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-10b | 0.001 | no | no | 0.36/0.50 | 18/26/0.61 | 0.0 0.0 1.3 | 1.3 0.0 0.5 | 23593 1 317 | 0 0 0 | 10 1 8 | 0 0 0 | 23 46 22 | 5 -14 6 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.14 0.56 0.06 | 1 6 1 | 37095 | 10 | 0 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------ACCCUGU---------------------------------------------------------------------------------------- | 29984 | miR-10a | |||||||||
| seed | -------------------------CCCUGUA--------------------------------------------------------------------------------------- | 6623 | novel | |||||||||
| seed | ---------------------------------------------------------------CAGAUUC------------------------------------------------- | 213 | novel | |||||||||
| seed | -----------------------------------------------------------------GAUUCGA----------------------------------------------- | 149 | novel | |||||||||
| seed | ----------------------------------------------------------------AGAUUCG------------------------------------------------ | 86 | novel | |||||||||
| seed | --------------------------CCUGUAG-------------------------------------------------------------------------------------- | 13 | miR-10b | |||||||||
| seed | ---------------------------CUGUAGA------------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | -----------------------UACCCUG----------------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | --------------------------------------------------------------ACAGAUU-------------------------------------------------- | 6 | novel | |||||||||
| seed | ------------------------------------------------------------------AUUCGAU---------------------------------------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------GGUACCC----------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------------------CACAGAU--------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------UGUAGAA------------------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------TACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 21 | 34 | 32 | 45 | 31 | 793 | 373 | 42 | 55 | 5366 | 4355 | |
| -----------------------TACCCTGTAGAACCGAAT------------------------------------------------------------------------------ | 18 | 17 | 13 | 46 | 19 | 453 | 216 | 38 | 26 | 2557 | 3830 | |
| -----------------------TACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 22 | 15 | 11 | 28 | 11 | 133 | 108 | 13 | 20 | 1106 | 3317 | |
| -----------------------TACCCTGTAGAACCGAATT----------------------------------------------------------------------------- | 19 | 24 | 13 | 36 | 17 | 328 | 123 | 22 | 25 | 1924 | 2244 | |
| ------------------------ACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 20 | 7 | 6 | 17 | 3 | 158 | 58 | 15 | 15 | 1274 | 1041 | |
| ------------------------ACCCTGTAGAACCGAATT----------------------------------------------------------------------------- | 18 | 3 | 3 | 5 | 1 | 102 | 41 | 12 | 4 | 678 | 767 | |
| -----------------------TACCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 20 | 11 | 12 | 13 | 2 | 44 | 29 | - | 9 | 459 | 623 | |
| ------------------------ACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 23 | 1 | - | 3 | - | 33 | 19 | 1 | - | 362 | 416 | |
| -----------------------TACCCTGTAGAACCGAATTTGTG------------------------------------------------------------------------- | 23 | - | - | 1 | - | 24 | 9 | 1 | 1 | 286 | 278 | |
| ------------------------ACCCTGTAGAACCGAATTTGTG------------------------------------------------------------------------- | 22 | 2 | - | - | 1 | 26 | 8 | - | 3 | 255 | 229 | |
| ------------------------ACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 21 | - | 1 | - | 1 | 17 | 11 | 2 | 2 | 165 | 300 | |
| ------------------------ACCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 19 | 3 | - | 5 | 2 | 23 | 12 | 2 | - | 231 | 217 | |
| -----------------------TACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 24 | 2 | - | - | - | 16 | 2 | - | - | 121 | 164 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAA------------------------------------ | 19 | 1 | - | - | - | 1 | 4 | - | - | 53 | 38 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAA------------------------------------ | 21 | - | - | - | 1 | 3 | 3 | - | - | 41 | 45 | |
| ------------------------ACCCTGTAGAACCGAATTTGTGTG----------------------------------------------------------------------- | 24 | - | - | - | - | 3 | 1 | 1 | - | 27 | 28 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGA------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | 26 | 29 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAA------------------------------------ | 20 | - | - | - | - | - | 2 | - | - | 27 | 19 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGG--------------------------------------- | 18 | 1 | - | 1 | - | - | - | - | 1 | 21 | 18 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGA------------------------------------- | 18 | 1 | - | - | - | 1 | 1 | - | - | 14 | 14 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGA------------------------------------- | 19 | - | - | - | - | - | 1 | - | 1 | 7 | 11 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGG-------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | 9 | 6 | |
| -----------------------TACCCTGTAGAACCGAATTTGTGTG----------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | 13 | 2 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAATA---------------------------------- | 21 | - | - | - | - | 1 | - | - | - | 3 | 7 | |
| -------------------------CCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | 2 | - | 4 | 3 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGG-------------------------------------- | 18 | - | - | - | - | - | - | - | - | 3 | 5 | |
| --------------------------CCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 4 | 3 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAATAT--------------------------------- | 22 | - | - | - | - | - | - | - | - | 1 | 6 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAATA---------------------------------- | 22 | - | - | - | - | 1 | - | - | - | 1 | 4 | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAAT----------------------------------- | 22 | - | - | - | - | 1 | - | - | - | 1 | 3 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGGGGAA------------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | 2 | |
| -----------------------------------------------------------------GATTCGATTCTAGGGGAA------------------------------------ | 18 | - | - | - | - | - | - | - | - | - | 3 | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAATAT--------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 3 | |
| ----------------------------------------------------------------AGATTCGATTCTAGGGGAAT----------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | 2 | |
| -------------------------CCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | 1 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGGG--------------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| ----------------------ATACCCTGTAGAACCGAAT------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 2 | - | |
| -----------------------TACCCTGTAGAACCGAATTTGTGTGG---------------------------------------------------------------------- | 26 | - | - | - | - | - | - | - | - | 1 | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------CACAGATTCGATTCTAGG---------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------CTGTAGAACCGAATTTGT-------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------GATTCGATTCTAGGGGAAT----------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAA------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------CAGATTCGATTCTAGGGGAAT----------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTG--------------------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------------------------------TGGTACCCACATAGTCAC------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ----------------------ATACCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 25 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------ACAGATTCGATTCTAGGGGAATA---------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------CCCTGTAGAACCGAATTT---------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------TCACAGATTCGATTCTAGGGGAA------------------------------------ | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| rno-miR-10b | -------------------------CCCTGTAGAACCGAATTTGTGT------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | - | - |
| rat | AAAGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTT-------------- | |||||||||||
| human | -----------------------TACCCTGTAGAACCGAATTTGTGTGGTATCCGTATAGTCACAGATTCGATTCTAGGGGAA------------------------------------ | |||||||||||
| mouse | GAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTACCCACATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCAAAAACTTCATATATCTCCGAC | |||||||||||
| **************************** ** *************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000002145 ENSRNOG00000001578 NP_001099355.1 | |||||||||||
| ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>... | ENSRNOT00000053677 ENSRNOG00000035554 rno-mir-10b | |||||||||||
| rat | .(((((....(((((.((((((((.((((.(((((.((((((((((..((......))...)))))))))).))))))))).)))))))).)))))....))))) | 1.000 -39.40 | ||||||||||
| human | ...(((.(((((.((((((((((..(((....)))...)))))))))).))))).))).. | 1.000 -24.40 | ||||||||||
| mouse | ((((((....(((((.((((((((.((((.(((((.((((((((((..((......))...)))))))))).))))))))).)))))))).)))))....))))))............. | 0.992 -43.40 | ||||||||||
| rat | chromosome:3:57340855:57340959:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053677|ENSRNOG00000035554 ## Same_strand|Intronic_non-coding|ENSRNOT00000002145|ENSRNOG00000001578 ## ENSRNOG00000001578|protein_coding|NP_001099355.1|homeo box D4 [Source:RefSeq_peptide;Acc:NP_001099355] ## ENSRNOG00000035554|miRNA|rno-mir-10b|rno-mir-10b [Source:miRBase;Acc:MI0000842] ## {MIR: rno-mir-10b} |
| human | chromosome:2:176723260:176723404:1 | Opposite_strand|Intronic_non-coding|ENST00000405359|ENSG00000218175|protein_coding| ## Same_strand|Boundary_non-coding|ENST00000385011|ENSG00000207744|miRNA|hsa-mir-10b [Source:miRBase;Acc:MI0000267] ## {MIR: hsa-mir-10b} |
| mouse | chromosome:2:74564108:74564226:1 | Same_strand|Intronic_non-coding|ENSMUST00000111983|ENSMUSG00000079277|protein_coding|homeo box D3 Gene [Source:MGI (curated);Acc:Hoxd3-001] ## Same_strand|Boundary_non-coding|ENSMUST00000053932|ENSMUSG00000079277|protein_coding|homeo box D3 Gene [Source:MGI (curated);Acc:Hoxd3-001] ## {MIR: mmu-mir-10b} |
sblock8162 (miRBase rno-mir-103-2) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-103-2 | 0.001 | no | no | 0.43/0.56 | 18/24/0.61 | 0.0 0.0 | 0.0 1.7 | 251 323983 | 0 0 | 10 10 | 0 0 | 14 12 | 4 7 | 5arm 3arm | 1 3 | nd nd | 0.11 0.11 | 1 1 | 716123 | 10 | -1 | 2 |
| Member of family miR-103/107 (seed GCAGCAU): rno-mir-107, rno-mir-103, rno-mir-103, block906578_cand, block1270680_cand |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------------GCAGCAU-------------------------------------------- | 712145 | miR-103/107 | |||||||||
| seed | -------------------------------------------------------------------------AGCAUUG------------------------------------------ | 2561 | novel | |||||||||
| seed | ----------------------------------GCUUCUU--------------------------------------------------------------------------------- | 567 | novel | |||||||||
| seed | ------------------------------------------------------------------------CAGCAUU------------------------------------------- | 558 | novel | |||||||||
| seed | ----------------------------------------------------------------------AGCAGCA--------------------------------------------- | 206 | miR-15b/16/195/322/497 | |||||||||
| seed | ---------------------------------------------------------------------------CAUUGUA---------------------------------------- | 46 | novel | |||||||||
| seed | --------------------------------------------------------------------------GCAUUGU----------------------------------------- | 31 | novel | |||||||||
| seed | ----------------------------------------------------------------------------AUUGUAC--------------------------------------- | 4 | novel | |||||||||
| seed | ------------------------------------------------------------------GUCAAGC------------------------------------------------- | 3 | novel | |||||||||
| seed | ---------------------------------------------------------------------AAGCAGC---------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------CUUUACA----------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-miR-103 | ----------------------------------------------------------------------AGCAGCATTGTACAGGGCTATGA----------------------------- | 23 | 66575 | 34098 | 8487 | 8152 | 20470 | 18235 | 7090 | 12212 | 31219 | 28722 |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGCT--------------------------------- | 19 | 31371 | 26773 | 7626 | 6706 | 11036 | 8166 | 7387 | 8117 | 17137 | 15017 | |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGC---------------------------------- | 18 | 35841 | 25971 | 6106 | 6667 | 9819 | 7152 | 5564 | 8900 | 14561 | 16355 | |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGCTATG------------------------------ | 22 | 22943 | 15146 | 4271 | 4549 | 9390 | 8289 | 4123 | 6401 | 10636 | 10826 | |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGCTA-------------------------------- | 20 | 19397 | 15036 | 4396 | 4141 | 6234 | 4459 | 3960 | 5870 | 11717 | 9574 | |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGCTAT------------------------------- | 21 | 3469 | 2977 | 1313 | 1664 | 1535 | 1372 | 1148 | 1669 | 2125 | 1927 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTATGA----------------------------- | 21 | 410 | 250 | 45 | 42 | 133 | 139 | 39 | 73 | 244 | 221 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTA-------------------------------- | 18 | 117 | 116 | 13 | 12 | 48 | 31 | 17 | 28 | 63 | 72 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTATG------------------------------ | 20 | 88 | 60 | 4 | 14 | 31 | 34 | 3 | 19 | 37 | 49 | |
| ---------------------------------AGCTTCTTTACAGTGCTGC---------------------------------------------------------------------- | 19 | 106 | 37 | 8 | 10 | 30 | 39 | 8 | 24 | 33 | 36 | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTA-------------------------------- | 19 | 46 | 31 | 12 | 15 | 27 | 8 | 8 | 13 | 37 | 34 | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTATGA----------------------------- | 22 | 48 | 23 | 10 | 8 | 11 | 10 | 14 | 8 | 28 | 34 | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGGCT--------------------------------- | 20 | 27 | 15 | 4 | 1 | 13 | 11 | 1 | 6 | 15 | 13 | |
| ---------------------------------AGCTTCTTTACAGTGCTGCCT-------------------------------------------------------------------- | 21 | 24 | 22 | 1 | 4 | 10 | 8 | 1 | 5 | 6 | 2 | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTATG------------------------------ | 21 | 14 | 9 | 3 | 5 | 5 | 10 | 4 | 7 | 9 | 12 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTAT------------------------------- | 19 | 12 | 17 | 3 | 3 | 3 | 5 | 7 | 4 | 8 | 9 | |
| ----------------------------------------------------------------------AGCAGCATTGTACAGGGCTATGAA---------------------------- | 24 | 17 | 9 | 4 | - | 2 | 1 | 2 | 2 | 7 | 12 | |
| ---------------------------------AGCTTCTTTACAGTGCTGCCTT------------------------------------------------------------------- | 22 | 18 | 7 | 1 | 2 | 3 | 8 | 2 | 4 | 5 | 4 | |
| ---------------------------------AGCTTCTTTACAGTGCTG----------------------------------------------------------------------- | 18 | 13 | 4 | 1 | - | 5 | 4 | 4 | 4 | 7 | 4 | |
| ---------------------------------AGCTTCTTTACAGTGCTGCC--------------------------------------------------------------------- | 20 | 18 | 2 | - | 3 | 1 | 2 | 4 | 1 | 6 | 5 | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCT--------------------------------- | 18 | 11 | 5 | 2 | 4 | 9 | 1 | 1 | 1 | 4 | 1 | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGGC---------------------------------- | 19 | 6 | 5 | 2 | 4 | 5 | 2 | 1 | 1 | 2 | 7 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTATGAA---------------------------- | 22 | 11 | 1 | - | - | 6 | 6 | 1 | 2 | 2 | 5 | |
| --------------------------------------------------------------------------GCATTGTACAGGGCTATGA----------------------------- | 19 | 9 | 5 | 1 | 2 | 3 | 2 | - | 2 | 2 | 2 | |
| -------------------------------------------------------------------------AGCATTGTACAGGGCTATGA----------------------------- | 20 | 7 | 4 | 1 | - | 1 | 1 | - | 2 | 8 | 2 | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGGCTA-------------------------------- | 21 | 3 | 3 | - | 2 | 1 | 2 | 1 | 2 | 7 | 3 | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGG----------------------------------- | 18 | 8 | 1 | 1 | 3 | - | 1 | 2 | 1 | 3 | 2 | |
| --------------------------------------------------------------------------GCATTGTACAGGGCTATG------------------------------ | 18 | 6 | 6 | 1 | - | - | - | 2 | 1 | 1 | 1 | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGGCTATG------------------------------ | 23 | 2 | 2 | 1 | 3 | 2 | 2 | - | 1 | 1 | 3 | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTAT------------------------------- | 20 | 2 | - | 2 | - | - | 1 | - | 1 | 5 | 2 | |
| ---------------------------------AGCTTCTTTACAGTGCTGCCTTG------------------------------------------------------------------ | 23 | 1 | 2 | 1 | - | 1 | 1 | - | - | 2 | 3 | |
| -------------------------------------------------------------------------AGCATTGTACAGGGCTATG------------------------------ | 19 | 1 | - | 1 | - | 1 | - | - | - | 1 | 1 | |
| ------------------------------------------------------------------------CAGCATTGTACAGGGCTATGAAA--------------------------- | 23 | 1 | 1 | - | - | 1 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------CATTGTACAGGGCTATGA----------------------------- | 18 | 2 | - | - | - | - | - | - | 2 | - | - | |
| -----------------------------------------------------------------GGTCAAGCAGCATTGTACAG------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | - | - | |
| ---------------------------------------------------------------------AAGCAGCATTGTACAGGGCTAT------------------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTATGAA---------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | - | |
| -------------------------------------TCTTTACAGTGCTGCCTTG------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------GGTCAAGCAGCATTGTAC--------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------------------GCAGCATTGTACAGGGCTATGAAA--------------------------- | 24 | - | - | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------CAAGCAGCATTGTACAGGG----------------------------------- | 19 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | -------------------GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAA----------------- | |||||||||||
| human | CCCACCTCAGCAGAGCTGCGTCTTTGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAATGGGCTGCCCTTGGG-- | |||||||||||
| mouse | TCCACCTCAGCAGAGCT--GTCTTCGTGCTTTCAGCTTCTTTACAGTGCTGCCTTGTAGCATTCAGGTCAAGCAGCATTGTACAGGGCTATGAAAGAACCAAGAATGGGCTGCCCTTAGGGA | |||||||||||
| ***** ******************************************************************************** | ||||||||||||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000033554 ENSRNOG00000025286 Pank2 | |||||||||||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000055736 ENSRNOG00000025286 Pank2 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053619 ENSRNOG00000035496 rno-mir-103-2 | |||||||||||
| rat | .((((.((.(((((((((.((.(((((((((((((((.......))))....))))))))))).)))))..)))))).)).)))). | 1.000 -32.10 | ||||||||||
| human | ((((.....((((..((...((((.((.((((((((.(((.(((((((((((((((.......))))....))))))))))).))))))..))))).)).))))..)).))))...)))) | 0.893 -42.60 | ||||||||||
| mouse | (((......((((.... .((((.((.((((((((.(((.(((((((((((((((.......))))....))))))))))).))))))..))))).)).)))).....))))......))) | 0.977 -41.80 | ||||||||||
| rat | chromosome:3:118996602:118996687:1 | Same_strand|Intronic_coding|ENSRNOT00000033554|ENSRNOG00000025286 ## Same_strand|Boundary_non-coding|ENSRNOT00000053619|ENSRNOG00000035496 ## Same_strand|Exonic_non-coding|ENSRNOT00000053619|ENSRNOG00000035496 ## ENSRNOG00000025286|protein_coding|Pank2|pantothenate kinase 2 (Hallervorden-Spatz syndrome) Gene [Source:MGI (curated);Acc:Pank2-001] ## ENSRNOG00000035496|miRNA|rno-mir-103-2|rno-mir-103-2 [Source:miRBase;Acc:MI0000887] ## {MIR: rno-mir-103-2} |
| human | chromosome:20:3846118:3846237:1 | Same_strand|Intronic_coding|ENST00000336066|ENSG00000125779|protein_coding|Pantothenate kinase 2, mitochondrial Precursor (EC 2.7.1.33)(Pantothenic acid kinase 2)(hPANK2) [Source:UniProtKB/Swiss-Prot;Acc:Q9BZ23] ## Same_strand|Boundary_non-coding|ENST00000362154|ENSG00000199024|miRNA|hsa-mir-103-2 [Source:miRBase;Acc:MI0000108] ## {MIR: hsa-mir-103-2} ## {ASMIR: hsa-mir-103-2-as} |
| mouse | chromosome:2:131113771:131113890:1 | Same_strand|Intronic_coding|ENSMUST00000041233|ENSMUSG00000037514|protein_coding|pantothenate kinase 2 (Hallervorden-Spatz syndrome) Gene [Source:MGI (curated);Acc:Pank2-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083629|ENSMUSG00000065563|miRNA|mmu-mir-103-2 [Source:miRBase;Acc:MI0000588] ## {MIR: mmu-mir-103-2} |
rno-mir-29a
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-29a 5arm | 454 | 356 | 72 | 75 | 110 | 113 | 78 | 85 | 177 | 297.500 |
| rno-mir-29a 3arm | 222304 | 216260 | 41427 | 40025 | 105196 | 49143 | 55463 | 74197 | 57428 | 53980 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-29a 5arm | 0.015 | 0.016 | 0.004 | 0.004 | 0.005 | 0.009 | 0.006 | 0.004 | 0.012 | 0.020 |
| rno-mir-29a 3arm | 7.389 | 9.438 | 2.244 | 2.374 | 5.124 | 3.725 | 4.314 | 3.904 | 3.786 | 3.592 |
sblock8391 (miRBase rno-mir-29a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-29a | 0.001 | no | no | 0.28/0.50 | 18/26/0.68 | 0.0 0.3 0.0 | 1.7 1.7 1.7 | 1120 3 510725 | 0 0 0 | 10 2 10 | 0 0 0 | 15 37 13 | -2 -22 3 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.17 0.48 0.14 | 3 11 3 | 917242 | 10 | 5 | 2 |
| Located in cluster 51: rno-mir-29a, rno-mir-29b |
| Member of family miR-29a/29b/29c (seed AGCACCA): rno-mir-29b, rno-mir-29b, rno-mir-29c, rno-mir-29a |
| reads | miRBase family seed | |||||||||||
| seed | ------------------------------------------------------AGCACCA---------------------------------- | 883426 | miR-29a/29b/29c | |||||||||
| seed | -----------------------------------------------------UAGCACC----------------------------------- | 21512 | novel | |||||||||
| seed | -------------------------------------------------------GCACCAU--------------------------------- | 10165 | novel | |||||||||
| seed | ----------------CUGAUUU------------------------------------------------------------------------ | 1786 | miR-29a* | |||||||||
| seed | --------------------------------------------------------CACCAUC-------------------------------- | 278 | novel | |||||||||
| seed | ----------------------------------------------------------CCAUCUG------------------------------ | 26 | novel | |||||||||
| seed | ------------------GAUUUCU---------------------------------------------------------------------- | 13 | novel | |||||||||
| seed | -----------------UGAUUUC----------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | ----------------------------------------------------CUAGCAC------------------------------------ | 11 | novel | |||||||||
| seed | ---------------ACUGAUU------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | ---------------------------------------------------------ACCAUCU------------------------------- | 4 | novel | |||||||||
| seed | --------------------------------------GUCAAUA-------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------------UCAAUAG------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------------------------------------CAUCUGA----------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------TAGCACCATCTGAAATCGGT---------------------- | 20 | 66564 | 71322 | 14223 | 12516 | 36308 | 16389 | 23814 | 24197 | 25036 | 17539 | |
| rno-miR-29a | -----------------------------------------------------TAGCACCATCTGAAATCGGTTA-------------------- | 22 | 79829 | 66302 | 10948 | 11410 | 26966 | 10211 | 5163 | 17532 | 10954 | 11199 |
| -----------------------------------------------------TAGCACCATCTGAAATCG------------------------ | 18 | 30227 | 32992 | 7036 | 7081 | 20381 | 10503 | 15154 | 16758 | 11480 | 10558 | |
| -----------------------------------------------------TAGCACCATCTGAAATCGG----------------------- | 19 | 25023 | 25959 | 5579 | 4658 | 12976 | 6565 | 8497 | 11233 | 5721 | 8108 | |
| -----------------------------------------------------TAGCACCATCTGAAATCGGTT--------------------- | 21 | 10382 | 10337 | 1524 | 1907 | 4081 | 2138 | 930 | 1542 | 1123 | 2158 | |
| -----------------------------------------------------TAGCACCATCTGAAATCGGTTAT------------------- | 23 | 1318 | 1085 | 988 | 1121 | 1512 | 740 | 275 | 564 | 363 | 1076 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCGGTT--------------------- | 22 | 1913 | 1615 | 160 | 161 | 513 | 521 | 318 | 378 | 582 | 682 | |
| ------------------------------------------------------AGCACCATCTGAAATCGGT---------------------- | 19 | 916 | 770 | 287 | 192 | 482 | 269 | 396 | 356 | 375 | 247 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCG------------------------ | 19 | 1009 | 931 | 75 | 93 | 365 | 278 | 186 | 230 | 239 | 455 | |
| ------------------------------------------------------AGCACCATCTGAAATCGGTTA-------------------- | 21 | 1200 | 916 | 157 | 144 | 283 | 166 | 71 | 224 | 243 | 205 | |
| -----------------------------------------------------TAGCACCATCTGAAATCGGTTATA------------------ | 24 | 218 | 410 | 156 | 327 | 326 | 413 | 268 | 442 | 406 | 385 | |
| ----------------------------------------------------CTAGCACCATCTGAAATC------------------------- | 18 | 929 | 792 | 66 | 110 | 262 | 228 | 162 | 193 | 222 | 343 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCGGTTA-------------------- | 23 | 928 | 997 | 52 | 85 | 150 | 149 | 38 | 176 | 265 | 266 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCGG----------------------- | 20 | 703 | 720 | 38 | 66 | 221 | 260 | 49 | 140 | 151 | 339 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCGGT---------------------- | 21 | 450 | 460 | 19 | 46 | 130 | 163 | 48 | 54 | 113 | 220 | |
| ------------------------------------------------------AGCACCATCTGAAATCGG----------------------- | 18 | 296 | 272 | 48 | 51 | 116 | 72 | 50 | 102 | 78 | 100 | |
| ------------------------------------------------------AGCACCATCTGAAATCGGTT--------------------- | 20 | 286 | 278 | 42 | 37 | 64 | 40 | 18 | 32 | 51 | 65 | |
| ---------------ACTGATTTCTTTTGGTGT-------------------------------------------------------------- | 18 | 85 | 66 | 7 | 13 | 9 | 22 | 13 | 13 | 48 | 74 | |
| ---------------ACTGATTTCTTTTGGTGTTC------------------------------------------------------------ | 20 | 92 | 57 | 14 | 21 | 31 | 28 | 15 | 26 | 21 | 34 | |
| ---------------ACTGATTTCTTTTGGTGTTCA----------------------------------------------------------- | 21 | 70 | 60 | 17 | 11 | 16 | 14 | 8 | 5 | 15 | 33 | |
| ---------------ACTGATTTCTTTTGGTGTTCAGA--------------------------------------------------------- | 23 | 51 | 42 | 8 | 6 | 17 | 7 | 5 | 17 | 33 | 61 | |
| rno-miR-29a* | ---------------ACTGATTTCTTTTGGTGTTCAG---------------------------------------------------------- | 22 | 45 | 50 | 5 | 8 | 8 | 15 | 14 | 7 | 23 | 52 |
| -------------------------------------------------------GCACCATCTGAAATCGGTTA-------------------- | 20 | 54 | 41 | 2 | 3 | 17 | 7 | 3 | 15 | 12 | 10 | |
| ------------------------------------------------------AGCACCATCTGAAATCGGTTAT------------------- | 22 | 21 | 20 | 17 | 10 | 28 | 17 | 8 | 14 | 10 | 17 | |
| ---------------ACTGATTTCTTTTGGTGTT------------------------------------------------------------- | 19 | 32 | 20 | 4 | 7 | 18 | 10 | 9 | 10 | 10 | 16 | |
| ---------------ACTGATTTCTTTTGGTGTTCAGAG-------------------------------------------------------- | 24 | 47 | 24 | - | 3 | 7 | 6 | 8 | 5 | 13 | 17 | |
| ---------------ACTGATTTCTTTTGGTGTTCAGAGTC------------------------------------------------------ | 26 | 19 | 29 | 17 | 5 | 3 | 11 | 5 | - | 11 | 8 | |
| -------------------------------------------------------GCACCATCTGAAATCGGTT--------------------- | 19 | 19 | 18 | 5 | 5 | 10 | 6 | 10 | 5 | 3 | 3 | |
| ---------------------------------------------------------ACCATCTGAAATCGGTTA-------------------- | 18 | 8 | 9 | - | 1 | - | 3 | - | 3 | 1 | 1 | |
| -------------------------------------------------------GCACCATCTGAAATCGGT---------------------- | 18 | 8 | 3 | - | 1 | 4 | 3 | 2 | 1 | - | 2 | |
| ------------------------------------------------------AGCACCATCTGAAATCGGTTATA------------------ | 23 | 1 | 1 | 2 | - | - | - | - | 1 | - | 1 | |
| -------------------------------------------------------GCACCATCTGAAATCGGTTAT------------------- | 21 | - | 1 | 3 | - | - | - | - | 2 | - | - | |
| ---------------------------------------------------TCTAGCACCATCTGAAATCGGTT--------------------- | 23 | 1 | 1 | - | - | 1 | - | - | 2 | - | 1 | |
| ----------------------------------------------------CTAGCACCATCTGAAATCGGTTAT------------------- | 24 | - | 4 | - | - | - | - | 1 | - | - | - | |
| -----------------TGATTTCTTTTGGTGTTCA----------------------------------------------------------- | 19 | 3 | - | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------CACCATCTGAAATCGGTTA-------------------- | 19 | 1 | 2 | - | - | - | - | - | 1 | - | - | |
| --------------GACTGATTTCTTTTGGTGT-------------------------------------------------------------- | 19 | - | 3 | - | - | - | - | - | - | - | - | |
| ----------------CTGATTTCTTTTGGTGTTCAGA--------------------------------------------------------- | 22 | - | 1 | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------TCTAGCACCATCTGAAATC------------------------- | 19 | - | 2 | - | - | - | - | 1 | - | - | - | |
| -----------------TGATTTCTTTTGGTGTTCAGAG-------------------------------------------------------- | 22 | 1 | - | - | 1 | - | - | - | - | 1 | - | |
| ----------------CTGATTTCTTTTGGTGTTCAGAGTC------------------------------------------------------ | 25 | - | 1 | - | - | - | - | - | - | 2 | - | |
| -----------------TGATTTCTTTTGGTGTTCAGAGTC------------------------------------------------------ | 24 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------CTGATTTCTTTTGGTGTTCAGAG-------------------------------------------------------- | 23 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------CTGATTTCTTTTGGTGTTC------------------------------------------------------------ | 19 | - | 1 | - | - | - | - | - | - | - | 1 | |
| -----------------TGATTTCTTTTGGTGTTCAG---------------------------------------------------------- | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| --------------GACTGATTTCTTTTGGTGTTCAGA--------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | - | |
| -----------------TGATTTCTTTTGGTGTTCAGA--------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------TCTAGCACCATCTGAAAT-------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| -------------------------------------AGTCAATAGAATTTTCTAGCACC----------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------CTGATTTCTTTTGGTGTT------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------AGTCAATAGAATTTTCTAGCACCA---------------------------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------TCTAGCACCATCTGAAATCGG----------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------CCATCTGAAATCGGTTATA------------------ | 19 | - | - | - | - | - | - | 1 | - | - | - | |
| -----------------TGATTTCTTTTGGTGTTCAGAGT------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------CTGATTTCTTTTGGTGTTCA----------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------GACTGATTTCTTTTGGTGTTC------------------------------------------------------------ | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| --------------------------------------GTCAATAGAATTTTCTAG--------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | ACCCCTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATAGAATTTTCTAGCACCATCTGAAATCGGTTATAATGATTGGGGA------- | |||||||||||
| human | ----------------CTGATTTCTTTTGGTGTTCAGAGTCAATATAATTTTCTAGCACCATCTGAAATCGGTTA-------------------- | |||||||||||
| mouse | -CCCCTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATAGAATTTTCTAGCACCATCTGAAATCGGTTATAATGATTGGGGAAGAGCAC | |||||||||||
| ***************************** ***************************** | ||||||||||||
| .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053581 ENSRNOG00000035458 rno-mir-29a | |||||||||||
| rat | .((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......)))). | 1.000 -35.14 | ||||||||||
| human | ((((((((...(((((((.((((...........)))))))))))...))))))))... | 1.000 -20.40 | ||||||||||
| mouse | ((((.......((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).......))))........ | 1.000 -34.64 | ||||||||||
| rat | chromosome:4:58107760:58107847:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053581|ENSRNOG00000035458 ## ENSRNOG00000035458|miRNA|rno-mir-29a|rno-mir-29a [Source:miRBase;Acc:MI0000863] ## {MIR: rno-mir-29a} |
| human | chromosome:7:130211978:130212105:-1 | Same_strand|Boundary_non-coding|ENST00000362111|ENSG00000198981|miRNA|hsa-mir-29a [Source:miRBase;Acc:MI0000087] ## {MIR: hsa-mir-29a} |
| mouse | chromosome:6:31012653:31012746:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083676|ENSMUSG00000065610|miRNA|mmu-mir-29a [Source:miRBase;Acc:MI0000576] ## {MIR: mmu-mir-29a} |
rno-mir-141
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-141 5arm | 18 | 0 | 3 | 11 | 8 | 44 | 0 | 3 | 42 | 115 |
| rno-mir-141 3arm | 213 | 2 | 30 | 29 | 51 | 87 | 4 | 13 | 689 | 1507 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-141 5arm | 0.001 | 0 | 0.000 | 0.001 | 0.000 | 0.003 | 0 | 0.000 | 0.003 | 0.008 |
| rno-mir-141 3arm | 0.007 | 0.000 | 0.002 | 0.002 | 0.002 | 0.007 | 0.000 | 0.001 | 0.045 | 0.100 |
sblock8712 (miRBase rno-mir-141) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-141 | 0.002 | no | no | 0.35/0.56 | 18/26/0.68 | 0.0 0.0 0.0 | 1.7 1.0 0.0 | 143 2 1121 | 0 0 0 | 8 1 10 | 0 0 0 | 13 37 16 | 6 -15 6 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.05 0.50 0.10 | 1 9 2 | 2869 | 10 | 1 | -2 |
| Located in cluster 54: rno-mir-141, rno-mir-200c |
| Member of family miR-141/200a (seed AACACUG): rno-mir-200a, rno-mir-141, rno-mir-141 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------------------AACACUG------------------------------------------------- | 2524 | miR-141/200a | |||||||||
| seed | -----------------------------CCAUCUU--------------------------------------------------------------------------------------------- | 219 | novel | |||||||||
| seed | --------------------------------------------------------------------------ACACUGU------------------------------------------------ | 83 | novel | |||||||||
| seed | -------------------------------AUCUUCC------------------------------------------------------------------------------------------- | 18 | novel | |||||||||
| seed | ---------------------------------------------------------------------------CACUGUC----------------------------------------------- | 11 | novel | |||||||||
| seed | ------------------------------------------------------------------------UAACACU-------------------------------------------------- | 6 | novel | |||||||||
| seed | ------------------------------CAUCUUC-------------------------------------------------------------------------------------------- | 4 | novel | |||||||||
| seed | -----------------------------------------------------GGUUGAA--------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------GUCCAUC----------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ----------------------------------------------------------------------------ACUGUCU---------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATG------------------------------------ | 21 | 107 | - | 10 | 18 | 8 | 21 | - | 3 | 274 | 847 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGA-------------------------------------- | 19 | 39 | - | 7 | 2 | 21 | 13 | 2 | 1 | 137 | 229 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAG--------------------------------------- | 18 | 23 | - | 6 | - | 4 | 15 | - | 2 | 119 | 148 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATGGC---------------------------------- | 23 | 10 | - | 1 | - | 3 | 9 | 1 | 2 | 25 | 84 | |
| rno-miR-141 | ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATGG----------------------------------- | 22 | 11 | - | - | - | 3 | 6 | - | 1 | 43 | 67 |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGAT------------------------------------- | 20 | 11 | - | 2 | 4 | 1 | 9 | - | 1 | 34 | 62 | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATG------------------------------------ | 20 | 5 | - | 1 | 3 | 6 | 8 | 1 | 1 | 15 | 22 | |
| ----------------------------TCCATCTTCCAGTGCAGTGTTG------------------------------------------------------------------------------- | 22 | 4 | - | - | 2 | 2 | 8 | - | 3 | 5 | 26 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATGGCC--------------------------------- | 24 | - | - | - | - | 1 | 3 | - | - | 17 | 26 | |
| ----------------------------TCCATCTTCCAGTGCAGTG---------------------------------------------------------------------------------- | 19 | 3 | - | 1 | 2 | 3 | 10 | - | - | 9 | 18 | |
| ----------------------------TCCATCTTCCAGTGCAGTGT--------------------------------------------------------------------------------- | 20 | 7 | - | - | 1 | 1 | 11 | - | - | 3 | 12 | |
| ----------------------------TCCATCTTCCAGTGCAGTGTT-------------------------------------------------------------------------------- | 21 | - | - | - | 4 | - | 7 | - | - | 3 | 16 | |
| ----------------------------TCCATCTTCCAGTGCAGTGTTGG------------------------------------------------------------------------------ | 23 | - | - | - | 1 | - | 3 | - | - | 6 | 19 | |
| ----------------------------TCCATCTTCCAGTGCAGT----------------------------------------------------------------------------------- | 18 | 3 | - | 2 | 1 | - | 5 | - | - | 2 | 14 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATGGCCC-------------------------------- | 25 | - | - | - | - | - | - | - | - | 14 | 5 | |
| ------------------------------------------------------------------------TAACACTGTCTGGTAAAGATGGCCCC------------------------------- | 26 | - | - | - | - | 1 | - | - | 1 | 3 | 7 | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGAT------------------------------------- | 19 | 2 | - | - | 1 | 1 | 2 | - | - | 3 | 2 | |
| --------------------------------------------------------------------------ACACTGTCTGGTAAAGATG------------------------------------ | 19 | - | 1 | 3 | - | 2 | - | - | - | 1 | - | |
| --------------------------------------------------------------------------ACACTGTCTGGTAAAGATGG----------------------------------- | 20 | - | 1 | - | 1 | - | 1 | - | 1 | - | - | |
| ------------------------------CATCTTCCAGTGCAGTGT--------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 2 | 2 | |
| ------------------------------CATCTTCCAGTGCAGTGTTGGA----------------------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | 1 | 2 | |
| ------------------------------CATCTTCCAGTGCAGTGTTG------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | 2 | |
| ------------------------------CATCTTCCAGTGCAGTGTTGG------------------------------------------------------------------------------ | 21 | - | - | - | - | 1 | - | - | - | 2 | - | |
| ------------------------------CATCTTCCAGTGCAGTGTT-------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 2 | 1 | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATGGCCC-------------------------------- | 24 | - | - | - | - | - | - | - | - | - | 3 | |
| ----------------------------TCCATCTTCCAGTGCAGTGTTGGA----------------------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATGG----------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATGGC---------------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------CTAACACTGTCTGGTAAAGATG------------------------------------ | 22 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------CCATCTTCCAGTGCAGTG---------------------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | 1 | |
| -----------------------------------------------------------------------CTAACACTGTCTGGTAAAG--------------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------CACTGTCTGGTAAAGATGG----------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------------CTAACACTGTCTGGTAAAGA-------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------CATCTTCCAGTGCAGTGTTGGAT---------------------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGA-------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TGGTTGAAGTACGAAGCTCC--------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------TGGTTGAAGTACGAAGCT----------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------CTAACACTGTCTGGTAAAGAT------------------------------------- | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------CTAACACTGTCTGGTAAAGATGGCCC-------------------------------- | 26 | - | - | - | - | - | - | - | - | 1 | - | |
| --------------------------AGTCCATCTTCCAGTGCAG------------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CCATCTTCCAGTGCAGTGTT-------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATGGCC--------------------------------- | 23 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------------------CCATCTTCCAGTGCAGTGTTGG------------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------AACACTGTCTGGTAAAGATGGCCCCC------------------------------ | 26 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | ---------------GGCTGACTCTGAGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTACGAAGCTCCTAACACTGTCTGGTAAAGATGGCCCCCGGGTCAGTTC-------------------- | |||||||||||
| human | CCGTAGTTCTCTGTCGGCCGGCCCTGGGTCCATCTTCCAGTACAGTGTTGGATGGTCTAATTGTGAAGCTCCTAACACTGTCTGGTAAAGATGGCTCCCGGGTGGGTTCTCTCGGCAGTAACCTTCAGG | |||||||||||
| mouse | ---------------GGCTGGCTCTGGGTCCATCTTCCAGTGCAGTGTTGGATGGTTGAAGTATGAAGCTCCTAACACTGTCTGGTAAAGATGGCCCCCGGGTCAGTT--------------------- | |||||||||||
| *** * * *** ************** ************** ** * ******************************* ******* *** | ||||||||||||
| ----- ---------------------------------------------------------------------------------------------- ----- | ENSRNOT00000056049 ENSRNOG00000037145 | |||||||||||
| ----- ---------------------------------------------------------------------------------------------- ----- | ENSRNOT00000056039 ENSRNOG00000037143 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053700 ENSRNOG00000035577 rno-mir-141 | |||||||||||
| rat | (((((((((.(.(.(((((((((((.((((((((((..((((.........)))).))))))))))))))..))))))).).).))))))))). | 1.000 -42.10 | ||||||||||
| human | ((..((....(((((((((.((((.(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..)))))))..))))))).))).....))))))....))...)) | 0.983 -57.20 | ||||||||||
| mouse | .((((((((.(((.(((((((((((.((((((((((..((((.........)))).))))))))))))))..))))))).))).)))))))). | 1.000 -48.30 | ||||||||||
| rat | chromosome:4:160840904:160840997:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053700|ENSRNOG00000035577 ## Opposite_strand|Intronic_coding|ENSRNOT00000056049|ENSRNOG00000037145 ## ENSRNOG00000035577|miRNA|rno-mir-141|rno-mir-141 [Source:miRBase;Acc:MI0000914] ## ENSRNOG00000037145|protein_coding|| ## ENSRNOG00000037143|protein_coding|| ## {MIR: rno-mir-141} |
| human | chromosome:12:6943507:6943635:1 | Same_strand|Boundary_non-coding|ENST00000384975|ENSG00000207708|miRNA|hsa-mir-141 [Source:miRBase;Acc:MI0000457] ## {MIR: hsa-mir-141} |
| mouse | chromosome:6:124667921:124668013:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083540|ENSMUSG00000065474|miRNA|mmu-mir-141 [Source:miRBase;Acc:MI0000166] ## {MIR: mmu-mir-141} |
sblock8899 (miRBase rno-mir-129-1) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-129-1 | 0.001 | no | no | 0.41/0.61 | 18/24/0.17 | 0.0 0.0 0.0 | 0.7 0.0 0.0 | 3633 2 179122 | 0 0 0 | 8 1 10 | 0 0 0 | 5 26 5 | 8 -12 10 | 5arm 5arm_loop_3arm 3arm | 2 2 2 | nd nd nd | 0.17 0.40 0.21 | 2 4 2 | 241775 | 10 | 2 | 0 |
| Member of family miR-129 (seed UUUUUGC): rno-mir-129, rno-mir-129 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------------AGCCCUU-------------------------------- | 234841 | miR-129* | |||||||||
| seed | -------------------------UUUUUGC---------------------------------------------------------------------------- | 4485 | miR-129 | |||||||||
| seed | ----------------------------------------------------------------------GCCCUUA------------------------------- | 1240 | novel | |||||||||
| seed | -------------------------------------------------------------------GAAGCCC---------------------------------- | 651 | novel | |||||||||
| seed | --------------------------------------------------------------------AAGCCCU--------------------------------- | 533 | novel | |||||||||
| seed | -----------------------------------------------------------------------CCCUUAC------------------------------ | 19 | novel | |||||||||
| seed | --------------------------UUUUGCG--------------------------------------------------------------------------- | 3 | miR-450a | |||||||||
| seed | ----------------------------------------------GUU-CUCU------------------------------------------------------ | 2 | novel | |||||||||
| seed | ----------------------------UUGCGGU------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAG--------------------- | 19 | 102540 | 76582 | 563 | 115 | 103 | 257 | 117 | 334 | 414 | 203 | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAGT-------------------- | 20 | 24213 | 13058 | 62 | 20 | 8 | 71 | 37 | 69 | 88 | 43 | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAA---------------------- | 18 | 9238 | 6301 | 50 | 12 | 11 | 36 | 13 | 34 | 35 | 27 | |
| ------------------------CTTTTTGCGGTCTGGGCTT----------------------------------------------------------------- | 19 | 1276 | 626 | - | 1 | - | 1 | 2 | - | 5 | 4 | |
| ---------------------------------------------------------------------AGCCCTTACCCCAAAAAGT-------------------- | 19 | 542 | 411 | 1 | - | - | 2 | 1 | 2 | 1 | 1 | |
| rno-miR-129 | ------------------------CTTTTTGCGGTCTGGGCTTGC--------------------------------------------------------------- | 21 | 648 | 267 | - | - | - | - | 2 | 1 | - | 1 |
| ------------------------CTTTTTGCGGTCTGGGCT------------------------------------------------------------------ | 18 | 574 | 225 | - | - | - | - | - | - | 3 | - | |
| ------------------------CTTTTTGCGGTCTGGGCTTG---------------------------------------------------------------- | 20 | 509 | 200 | - | - | - | - | 1 | - | - | 1 | |
| ---------------------------------------------------------------------AGCCCTTACCCCAAAAAG--------------------- | 18 | 198 | 73 | 1 | 1 | - | 2 | - | - | - | 1 | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAAAG--------------------- | 20 | 155 | 104 | - | - | - | 2 | - | 1 | 2 | 1 | |
| ------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAG--------------------- | 21 | 155 | 89 | 1 | - | - | - | - | 1 | 2 | - | |
| ------------------------------------------------------------------GGAAGCCCTTACCCCAAAA----------------------- | 19 | 95 | 62 | 1 | - | 1 | 1 | - | - | - | - | |
| ------------------------------------------------------------------GGAAGCCCTTACCCCAAA------------------------ | 18 | 87 | 66 | - | - | - | - | - | 1 | - | - | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAGTA------------------- | 21 | 88 | 62 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGT-------------------- | 21 | 76 | 71 | - | - | - | - | - | - | 3 | - | |
| ------------------------CTTTTTGCGGTCTGGGCTTGCT-------------------------------------------------------------- | 22 | 94 | 40 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAA----------------------- | 18 | 45 | 21 | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------GGAAGCCCTTACCCCAAAAA---------------------- | 20 | 33 | 16 | 1 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAAA---------------------- | 19 | 33 | 13 | 1 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------GGAAGCCCTTACCCCAAAAAGT-------------------- | 22 | 15 | 21 | - | - | 1 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------GCCCTTACCCCAAAAAGT-------------------- | 18 | 10 | 8 | - | 1 | - | - | - | - | - | - | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAGTAT------------------ | 22 | 13 | 5 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAGTATC----------------- | 23 | 16 | 2 | - | - | - | - | - | - | - | - | |
| ------------------------CTTTTTGCGGTCTGGGCTTGCTG------------------------------------------------------------- | 23 | 2 | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGTA------------------- | 22 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------AGCCCTTACCCCAAAAAGTA------------------- | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| -------------------------TTTTTGCGGTCTGGGCTT----------------------------------------------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------TGTT-CTCTCCACAGTAGTCA------------------------------------------ | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| -------------------------TTTTTGCGGTCTGGGCTTGC--------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------------AGCCCTTACCCCAAAAAGTAT------------------ | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------------GAAGCCCTTACCCCAAAAAGTAT------------------ | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------------AAGCCCTTACCCCAAAAAGTATCT---------------- | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------------------------TTTGCGGTCTGGGCTTGC--------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | - | - | - | - | |
| ------------------------CTTTTTGCGGTCTGGGCTTGCTGT------------------------------------------------------------ | 24 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | -------------------TGGGTCTTTTTGCGGTCTGGGCTTGCTGTT-CTCTCCACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCT---------------- | |||||||||||
| human | GGATGGCTGCTGTCTCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCAACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCCTTGTCC | |||||||||||
| mouse | ---CCACAGCTGTCTCCTTTGGATCTTTTTGCGGTCTGGGCTTGCTGTT-CTCTCGACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTACGGGAGGCTTGG--- | |||||||||||
| *** ************************** ***** ************************************ | ||||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053721 ENSRNOG00000035598 rno-mir-129-1 | |||||||||||
| rat | .(((((((((((.(((..((((((.(((.. ((((....)).)).))).))))))..))).))))))).)))) | 1.000 -29.50 | ||||||||||
| human | ....(((....(((((((.((((((((((((.(((..((((((.(((...((((....)).)).))).))))))..))).))))))).))))).)))))))...))). | 0.998 -44.30 | ||||||||||
| mouse | (((.....(((((((.((((((((((((.(((..((((((.(((.. ((((....)).)).))).))))))..))).))))))).))))).))))))).))) | 1.000 -45.00 | ||||||||||
| rat | chromosome:4:55892162:55892233:1 | Same_strand|Exonic_non-coding|ENSRNOT00000053721|ENSRNOG00000035598 ## ENSRNOG00000035598|miRNA|rno-mir-129-1|rno-mir-129-1 [Source:miRBase;Acc:MI0000902] ## {MIR: rno-mir-129-1} |
| human | chromosome:7:127635141:127635248:1 | Same_strand|Boundary_non-coding|ENST00000384972|ENSG00000207705|miRNA|hsa-mir-129-1 [Source:miRBase;Acc:MI0000252] ## {MIR: hsa-mir-129-1} |
| mouse | chromosome:6:28972603:28972703:1 | Same_strand|Boundary_non-coding|ENSMUST00000083535|ENSMUSG00000065469|miRNA|mmu-mir-129-1 [Source:miRBase;Acc:MI0000222] ## {MIR: mmu-mir-129-1} |
rno-mir-483
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-483 5arm | 9 | 18 | 5 | 3 | 0 | 0 | 19 | 13 | 1 | 0 |
| rno-mir-483 3arm | 7 | 8 | 1 | 0.500 | 0 | 0 | 15.500 | 17 | 1 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-483 5arm | 0.000 | 0.001 | 0.000 | 0.000 | 0 | 0 | 0.001 | 0.001 | 0.000 | 0 |
| rno-mir-483 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 | 0.001 | 0.001 | 0.000 | 0.000 |
sblock911 (miRBase rno-mir-483) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-483 | 0.006 | no | no | 0.50/0.72 | 18/24/0.65 | 0.0 0.0 | 1.3 0.6 | 51 30 | 0 0 | 7 8 | 0 0 | 7 6 | 4 4 | 5arm 3arm | 1 1 | nd nd | 0.21 0.18 | 2 2 | 123 | 8 | 0 | 2 |
| Member of family miR-483 (seed CACUCCU): rno-mir-483, block24589_cand |
| reads | miRBase family seed | |||||||||
| seed | ------------------------AGACGGG-------------------------------------------------------------------------------- | 67 | novel | |||||||
| seed | -----------------------------------------------------------------ACUCCUC--------------------------------------- | 51 | novel | |||||||
| seed | ----------------------------------------------------------------CACUCCU---------------------------------------- | 4 | miR-483 | |||||||
| seed | -------------------------GACGGGA------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------AAGACGGGAGAAGAGAAGG--------------------------------------------------------------------- | 19 | 1 | 3 | 2 | - | 9 | 7 | - | - | |
| ----------------------------------------------------------------CACTCCTCCCCTCCCGTCTTGT------------------------- | 22 | 2 | 5 | - | - | 4 | 7 | - | 1 | |
| -----------------------AAGACGGGAGAAGAGAAGGGA------------------------------------------------------------------- | 21 | 3 | 5 | 1 | 1 | 4 | 3 | 1 | - | |
| ----------------------------------------------------------------CACTCCTCCCCTCCCGTCTTG-------------------------- | 21 | 2 | 1 | 1 | - | 6 | 5 | - | 1 | |
| -----------------------AAGACGGGAGAAGAGAAGGGAG------------------------------------------------------------------ | 22 | - | 6 | - | 1 | 4 | 2 | - | - | |
| -----------------------AAGACGGGAGAAGAGAAG---------------------------------------------------------------------- | 18 | 4 | 3 | 2 | - | 1 | - | - | - | |
| ----------------------------------------------------------------CACTCCTCCCCTCCCGTCTT--------------------------- | 20 | - | 1 | - | - | 3 | 2 | - | - | |
| ----------------------------------------------------------------CACTCCTCCCCTCCCGTC----------------------------- | 18 | 2 | - | - | 1 | 1 | 2 | - | - | |
| ----------------------------------------------------------------CACTCCTCCCCTCCCGTCT---------------------------- | 19 | - | 1 | - | - | 2 | - | 1 | - | |
| -----------------------AAGACGGGAGAAGAGAAGGG-------------------------------------------------------------------- | 20 | - | 1 | - | 1 | - | 1 | - | - | |
| ---------------------------------------------------------------TCACTCCTCCCCTCCCGTCT---------------------------- | 20 | 1 | - | - | - | - | 1 | - | - | |
| rno-miR-483 | ---------------------------------------------------------------TCACTCCTCCCCTCCCGTCTTGT------------------------- | 23 | 1 | - | - | - | - | - | - | - |
| ---------------------------------------------------------------TCACTCCTCCCCTCCCGTC----------------------------- | 19 | - | - | - | - | - | 1 | - | - | |
| ------------------------AGACGGGAGAAGAGAAGGGAGT----------------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | |
| -----------------------AAGACGGGAGAAGAGAAGGGAGTG---------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | - | |
| rat | ----------------GAGGGGGAAGACGGGAGAAGAGAAGGGAGTGGTT---TTTGGGTGCCTCACTCCTCCCCTCCCGTCTTGTTCTCTC------------------- | |||||||||
| human | GCATTGCTGTGGGGGAGAGGGGGAAGACGGGAGGAAAGAAGGGAGTGGTTCCATCACGCCTCCTCACTCCTCTCCTCCCGTCTTCTCCTCTCCTGCCCTTGTCTCCCTGT- | |||||||||
| mouse | GGA---CCGTGGGGGAGAGGGGGAAGACGGGAGAAGAGAAGGGAGTGGTT---TTTGGGTGCCTCACTCCTCCCCTCCCGTCTTGTTCTCTCCTGCCCTATCTTCCCTTCC | |||||||||
| ***************** * ************** * * *********** *********** * ***** | ||||||||||
| +++++ ++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000027602 ENSRNOG00000020369 Igf2 | |||||||||
| +++++ ++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000050760 ENSRNOG00000020369 Igf2 | |||||||||
| +++++ ++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000052058 ENSRNOG00000020369 Igf2 | |||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000054369 ENSRNOG00000036246 rno-mir-483 | |||||||||
| rat | (((((((((((((((((..(((..(((.(.(((. .......))).).))))))..)))))))))).))))))) | 1.000 -33.90 | ||||||||
| human | .....((...((((((((.((((((((((((((((.((.((.(((.(((........)))..))).)).)).)))))))))))))))))))))..)))..))........ | 0.868 -53.90 | ||||||||
| mouse | ((( ....((((((((.((((....(((((((.((((.(((((.((.. ...(((((...)))))..)).))))).))))....))))))))))).))))))))))) | 1.000 -48.40 | ||||||||
| rat | chromosome:1:202910609:202910681:-1 | Same_strand|Intronic_coding|ENSRNOT00000027602|ENSRNOG00000020369 ## Same_strand|Exonic_non-coding|ENSRNOT00000054369|ENSRNOG00000036246 ## ENSRNOG00000020369|protein_coding|Igf2|Insulin-like growth factor II precursor (IGF-II) (Multiplication- stimulating polypeptide) (Multiplication-stimulating activity) (MSA). [Source:UniProtKB/Swiss-Prot;Acc:P01346] ## ENSRNOG00000036246|miRNA|rno-mir-483|rno-mir-483 [Source:miRBase;Acc:MI0003485] ## {MIR: rno-mir-483} |
| human | chromosome:11:2111922:2112031:-1 | Same_strand|Intronic_coding|ENST00000381392|ENSG00000167244|protein_coding|Insulin-like growth factor II Precursor (IGF-II)(Somatomedin-A) [Contains Insulin-like growth factor II Ala-25 Del] [Source:UniProtKB/Swiss-Prot;Acc:P01344] ## Same_strand|Boundary_non-coding|ENST00000385070|ENSG00000207805|miRNA|hsa-mir-483 [Source:miRBase;Acc:MI0002467] ## {Repeats: dust 0 class=dust} ## {MIR: hsa-mir-483} |
| mouse | chromosome:7:149840810:149840914:-1 | Same_strand|Intronic_coding|ENSMUST00000121128|ENSMUSG00000048583|protein_coding|insulin-like growth factor 2 Gene [Source:MGI (curated);Acc:Igf2-004] ## Same_strand|Boundary_non-coding|ENSMUST00000093631|ENSMUSG00000070140|miRNA|mmu-mir-483 [Source:miRBase;Acc:MI0003484] ## {MIR: mmu-mir-483} |
miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK (7 loci)
rno-mir-361
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-361 5arm | 6532 | 3267.500 | 997 | 1233.500 | 1942 | 1392.500 | 1041.500 | 1642 | 1087.500 | 1016 |
| rno-mir-361 3arm | 2803 | 1967 | 652 | 502 | 921 | 636 | 647 | 856 | 535 | 455 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-361 5arm | 0.217 | 0.143 | 0.054 | 0.073 | 0.095 | 0.106 | 0.081 | 0.086 | 0.072 | 0.068 |
| rno-mir-361 3arm | 0.093 | 0.086 | 0.035 | 0.030 | 0.045 | 0.048 | 0.050 | 0.045 | 0.035 | 0.030 |
sblock12697 (miRBase rno-mir-361) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-361 | 0.001 | no | DNA/MER1_type | 0.42/0.61 | 18/24/0.59 | 0.0 0.2 | 0.9 0.1 | 5440 2866 | 0 0 | 10 10 | 0 0 | 5 7 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.17 0.21 | 1 3 | 30164 | 10 | 1 | -2 |
| reads | miRBase family seed | |||||||||||
| seed | --------------UAUCAGA------------------------------------------------------------------- | 19735 | miR-361 | |||||||||
| seed | ------------------------------------------------------CCCCAGG--------------------------- | 6238 | novel | |||||||||
| seed | -----------------------------------------------------CCCCCAG---------------------------- | 3727 | novel | |||||||||
| seed | ---------------AUCAGAA------------------------------------------------------------------ | 433 | novel | |||||||||
| seed | -------------UUAUCAG-------------------------------------------------------------------- | 9 | novel | |||||||||
| seed | -----------------CAGAAUC---------------------------------------------------------------- | 8 | novel | |||||||||
| seed | -------------------------------------------------------CCCAGGU-------------------------- | 8 | novel | |||||||||
| seed | ----------------UCAGAAU----------------------------------------------------------------- | 3 | novel | |||||||||
| seed | ------------------AGAAUCU--------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------------------------------------------------UCCCCCA----------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| rno-miR-361 | -------------TTATCAGAATCTCCAGGGGTAC----------------------------------------------------- | 22 | 3052 | 1123 | 413 | 499 | 778 | 526 | 506 | 664 | 471 | 379 |
| -----------------------------------------------------CCCCCAGGTGTGATTCTGA---------------- | 19 | 1226 | 804 | 269 | 126 | 305 | 154 | 232 | 270 | 186 | 153 | |
| -------------TTATCAGAATCTCCAGGG--------------------------------------------------------- | 18 | 1265 | 651 | 195 | 200 | 359 | 246 | 179 | 309 | 161 | 153 | |
| -------------TTATCAGAATCTCCAGGGG-------------------------------------------------------- | 19 | 794 | 621 | 144 | 168 | 235 | 199 | 134 | 229 | 123 | 161 | |
| -------------TTATCAGAATCTCCAGGGGT------------------------------------------------------- | 20 | 673 | 541 | 107 | 140 | 252 | 165 | 98 | 198 | 147 | 137 | |
| -------------TTATCAGAATCTCCAGGGGTA------------------------------------------------------ | 21 | 534 | 220 | 92 | 172 | 238 | 182 | 77 | 185 | 119 | 129 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTGA---------------- | 20 | 463 | 322 | 103 | 112 | 146 | 145 | 112 | 187 | 101 | 76 | |
| -----------------------------------------------------CCCCCAGGTGTGATTCTGAT--------------- | 20 | 373 | 255 | 74 | 35 | 82 | 32 | 82 | 102 | 50 | 75 | |
| -----------------------------------------------------CCCCCAGGTGTGATTCTG----------------- | 18 | 211 | 159 | 54 | 48 | 105 | 52 | 57 | 46 | 59 | 39 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTGATTC------------- | 23 | 108 | 77 | 25 | 35 | 60 | 65 | 38 | 72 | 31 | 18 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCT------------------ | 18 | 78 | 78 | 22 | 42 | 82 | 65 | 40 | 53 | 29 | 26 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTG----------------- | 19 | 80 | 89 | 42 | 46 | 64 | 54 | 20 | 34 | 16 | 23 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTGAT--------------- | 21 | 82 | 84 | 31 | 20 | 29 | 27 | 22 | 38 | 11 | 24 | |
| -------------TTATCAGAATCTCCAGGGGTACT---------------------------------------------------- | 23 | 89 | 37 | 19 | 28 | 39 | 28 | 25 | 21 | 36 | 28 | |
| -----------------------------------------------------CCCCCAGGTGTGATTCTGATTCG------------ | 23 | 94 | 43 | 18 | 21 | 21 | 19 | 21 | 22 | 34 | 8 | |
| --------------TATCAGAATCTCCAGGGGTAC----------------------------------------------------- | 21 | 59 | 27 | 12 | 17 | 13 | 25 | 13 | 19 | 18 | 14 | |
| -----------------------------------------------------CCCCCAGGTGTGATTCTGATTC------------- | 22 | 50 | 31 | 7 | 7 | 17 | 13 | 10 | 20 | 12 | 10 | |
| --------------TATCAGAATCTCCAGGGG-------------------------------------------------------- | 18 | 22 | 11 | 8 | 3 | 8 | 5 | 3 | 2 | 5 | 10 | |
| --------------TATCAGAATCTCCAGGGGT------------------------------------------------------- | 19 | 16 | 22 | 4 | 1 | 8 | 7 | 3 | 9 | 3 | 3 | |
| -----------------------------------------------------CCCCCAGGTGTGATTCTGATT-------------- | 21 | 22 | 10 | 4 | 2 | - | 3 | 2 | 2 | - | - | |
| --------------TATCAGAATCTCCAGGGGTA------------------------------------------------------ | 20 | 17 | 7 | 3 | 3 | 4 | 3 | 2 | 2 | 1 | 2 | |
| -------------TTATCAGAATCTCCAGGGGTACTT--------------------------------------------------- | 24 | 10 | 8 | 3 | 4 | 4 | 5 | 3 | 2 | 1 | 2 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTGATTCG------------ | 24 | 4 | 8 | 2 | 6 | 4 | 2 | 9 | 1 | 4 | 1 | |
| ----------------------------------------------------TCCCCCAGGTGTGATTCTGATT-------------- | 22 | 9 | 7 | 1 | 2 | 4 | 5 | 1 | 8 | - | 2 | |
| --------------TATCAGAATCTCCAGGGGTACT---------------------------------------------------- | 22 | 6 | 4 | 1 | - | 2 | 3 | - | 1 | 2 | - | |
| ----------------TCAGAATCTCCAGGGGTAC----------------------------------------------------- | 19 | 1 | 1 | - | - | 3 | - | - | - | 1 | - | |
| ------------CTTATCAGAATCTCCAGGGGTAC----------------------------------------------------- | 23 | - | - | - | - | - | 1 | - | - | - | 2 | |
| ------------CTTATCAGAATCTCCAGGG--------------------------------------------------------- | 19 | 2 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------CCCCAGGTGTGATTCTGATTCGT----------- | 23 | 2 | - | - | - | - | - | - | - | 1 | - | |
| ---------------ATCAGAATCTCCAGGGGTACTT--------------------------------------------------- | 22 | 1 | - | - | - | 1 | - | - | - | - | - | |
| ----------------TCAGAATCTCCAGGGGTACT---------------------------------------------------- | 20 | 1 | - | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------CCCCAGGTGTGATTCTGAT--------------- | 19 | - | - | - | - | 1 | - | - | 1 | - | - | |
| ------------CTTATCAGAATCTCCAGG---------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------CCCCAGGTGTGATTCTGATTC------------- | 21 | 1 | - | - | - | - | - | 1 | - | - | - | |
| ------------CTTATCAGAATCTCCAGGGGT------------------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------CCCCAGGTGTGATTCTGATTCG------------ | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------CAGAATCTCCAGGGGTAC----------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------ATCAGAATCTCCAGGGGTAC----------------------------------------------------- | 20 | - | - | - | - | - | - | - | - | 1 | - | |
| -----------------CAGAATCTCCAGGGGTACT---------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------GTCCCCCAGGTGTGATTCTGATTC------------- | 24 | - | - | - | - | - | - | - | - | 1 | - | |
| rat | --------GAAGCTTATCAGAATCTCCAGGGGTACTTATTA--TTTGAAAAGTCCCCCAGGTGTGATTCTGATTCGTTTC-------- | |||||||||||
| human | GGGATTTGGGAGCTTATCAGAATCTCCAGGGGTACTTTATAATTTCAAAAAGTCCCCCAGGTGTGATTCTGATTTGCTTCCTTTTCCT | |||||||||||
| mouse | GGGACTCGGAAGCTTATCAGAATCTCCAGGGGTACTTAGTA--TTTGAAAAGTCCCCCAGGTGTGATTCTGATTTGTTTCCCTCTCCT | |||||||||||
| * *************************** ** ** *************************** * *** | ||||||||||||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000000174 ENSRNOG00000000161 Chm | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053667 ENSRNOG00000035544 rno-mir-361 | |||||||||||
| rat | (((((..(((((((((.((.((((.((((.((. ...)).)))).)))).))...)))))))))..))))) | 1.000 -29.10 | ||||||||||
| human | ((((...((((((..(((((((((.((.((((.(((((..........))))).)))).))...)))))))))..))))))...)))) | 1.000 -41.60 | ||||||||||
| mouse | ((((...((((((..(((((((((.((.((((.((((.... ......)))).)))).))...)))))))))..))))))...)))) | 1.000 -37.40 | ||||||||||
| rat | chromosome:X:101800145:101800214:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000053667|ENSRNOG00000035544 ## Same_strand|Intronic_coding|ENSRNOT00000000174|ENSRNOG00000000161 ## Same_strand|Exonic_non-coding|ENSRNOT00000053667|ENSRNOG00000035544 ## ENSRNOG00000035544|miRNA|rno-mir-361|rno-mir-361 [Source:miRBase;Acc:MI0003481] ## ENSRNOG00000000161|protein_coding|Chm|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1) (REP-1) (Choroideraemia protein homolog). [Source:UniProtKB/Swiss-Prot;Acc:P37727] ## {MIR: rno-mir-361} |
| human | chromosome:X:85045289:85045376:-1 | Same_strand|Boundary_non-coding|ENST00000358786|ENSG00000188419|protein_coding|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1)(REP-1)(Choroideraemia protein)(TCD protein) [Source:UniProtKB/Swiss-Prot;Acc:P24386] ## Same_strand|Intronic_coding|ENST00000357749|ENSG00000188419|protein_coding|Rab proteins geranylgeranyltransferase component A 1 (Rab escort protein 1)(REP-1)(Choroideraemia protein)(TCD protein) [Source:UniProtKB/Swiss-Prot;Acc:P24386] ## {Repeats: MER5A 1 class=DNA/MER1_type} ## {MIR: hsa-mir-361} |
| mouse | chromosome:X:110188425:110188510:-1 | Same_strand|Intronic_coding|ENSMUST00000113388|ENSMUSG00000025531|protein_coding|choroidermia Gene [Source:MGI (curated);Acc:Chm-001] ## Same_strand|Boundary_non-coding|ENSMUST00000083576|ENSMUSG00000065510|miRNA|mmu-mir-361 [Source:miRBase;Acc:MI0000761] ## {Repeats: dust 0 class=dust,MER5B 1 class=DNA/MER1_type} ## {MIR: mmu-mir-361} |
rno-mir-326
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-326 5arm | 5 | 1.500 | 0 | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 |
| rno-mir-326 3arm | 4562 | 4492.500 | 185.500 | 169.500 | 795 | 363 | 188.500 | 230.500 | 194 | 838 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-326 5arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
| rno-mir-326 3arm | 0.152 | 0.196 | 0.010 | 0.010 | 0.039 | 0.028 | 0.015 | 0.012 | 0.013 | 0.056 |
sblock2041 (miRBase rno-mir-326) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-326 | 0.001 | no | DNA/Tip100 | 0.55/0.72 | 18/24/0.61 | 0.0 0.0 0.0 0.0 | 0.0 0.4 0.0 1.9 | 1 5 3 8916 | 0 0 0 0 | 1 3 1 10 | 0 0 0 0 | 0 19 43 14 | 26 5 -21 3 | 5arm 5arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.17 0.28 0.59 0.09 | 2 4 12 1 | 12032 | 10 | -1 | 4 |
| Member of family miR-326/330 (seed CUCUGGG): rno-mir-330, rno-mir-326 |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------CUCUGGG-------------------------------------- | 11990 | miR-326/330 | |||||||||
| seed | ----------------------------------------------------------------UCUGGGC------------------------------------- | 22 | novel | |||||||||
| seed | -----------------------------------------------------------------CUGGGCC------------------------------------ | 6 | novel | |||||||||
| seed | -----------------------GGGGCAG------------------------------------------------------------------------------ | 5 | novel | |||||||||
| seed | -----------------------------------------------GUUAUGC------------------------------------------------------ | 3 | novel | |||||||||
| seed | --------------------------------------------------------------CCUCUGG--------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------------------------UGGGCCC----------------------------------- | 2 | novel | |||||||||
| seed | ----UCAUCUG------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCCAGTC------------------------ | 22 | 1240 | 984 | 45 | 36 | 206 | 60 | 34 | 36 | 32 | 102 | |
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCCA--------------------------- | 19 | 999 | 1008 | 39 | 32 | 177 | 72 | 56 | 68 | 29 | 164 | |
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCCAG-------------------------- | 20 | 840 | 900 | 34 | 32 | 152 | 109 | 28 | 37 | 65 | 255 | |
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCC---------------------------- | 18 | 729 | 859 | 25 | 30 | 119 | 70 | 30 | 39 | 28 | 95 | |
| rno-miR-326 | --------------------------------------------------------------CCTCTGGGCCCTTCCTCCAGT------------------------- | 21 | 668 | 689 | 39 | 38 | 125 | 47 | 40 | 46 | 39 | 206 |
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCCAGTCC----------------------- | 23 | 73 | 41 | 3 | 1 | 14 | 5 | - | 3 | 1 | 13 | |
| ---------------------------------------------------------------CTCTGGGCCCTTCCTCCA--------------------------- | 18 | 2 | 3 | 1 | 1 | - | - | 1 | 1 | - | - | |
| ---------------------------------------------------------------CTCTGGGCCCTTCCTCCAGT------------------------- | 20 | 2 | 5 | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------CCTCTGGGCCCTTCCTCCAGTCCC---------------------- | 24 | 2 | 1 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------CTCTGGGCCCTTCCTCCAGTCC----------------------- | 22 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------GGTTATGCTCAGATCGCCTCTG---------------------------------------- | 22 | 3 | - | - | - | - | - | - | - | - | - | |
| ----------------------GGGGGCAGGGCCTTTGTGA------------------------------------------------------------------- | 19 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------CTCTGGGCCCTTCCTCCAGTC------------------------ | 21 | - | 1 | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------------------GCCTCTGGGCCCTTCCTCCA--------------------------- | 20 | 2 | - | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCTGGGCCCTTCCTCCAGT------------------------- | 19 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CTGGGCCCTTCCTCCAGTCC----------------------- | 20 | - | - | - | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------------TCTGGGCCCTTCCTCCAG-------------------------- | 18 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------GGGGGCAGGGCCTTTGTG-------------------------------------------------------------------- | 18 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------GGGGGCAGGGCCTTTGTGAA------------------------------------------------------------------ | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------TCTGGGCCCTTCCTCCAGTCC----------------------- | 21 | - | - | - | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------TCTGGGCCCTTCCTCCAGTC------------------------ | 20 | 1 | - | - | - | - | - | - | - | - | - | |
| ---CTCATCTGTCTGTGGGGC--------------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------------GCCTCTGGGCCCTTCCTCCAGTC------------------------ | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | ---CTCATCTGTCTGTGGGGCTGGGGGCAGGGCCTTTGTGAAGGCGGGTTATGCTCAGATCGCCTCTGGGCCCTTCCTCCAGTCCCGAGGCAGATTTA---------- | |||||||||||
| human | AGCCTCATCTGTCTGTTGGGCTGGAGGCAGGGCCTTTGTGAAGGCGGGTGGTGCTCAGATCGCCTCTGGGCCCTTCCTCCAGCCCCGAGGCGGATTCACCATGAGGCT | |||||||||||
| mouse | -GCCTCATCTGTCTGTTGGGCTGGGGGCAGGGCCTTTGTGAAGGCGGGTTATGCTCAGATCGCCTCTGGGCCCTTCCTCCAGTCCCGAGGCAGATTTACTTCGAGGC- | |||||||||||
| ************* ******* ************************ ******************************* ******** **** * | ||||||||||||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | ENSRNOT00000055313 ENSRNOG00000030404 Arrb1 | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053629 ENSRNOG00000035506 rno-mir-326 | |||||||||||
| rat | ...((((((((.((((((((((((.(((((((....((.(((((............))))))).))))))).))))))))))))))))))))... | 1.000 -56.90 | ||||||||||
| human | ((((((((((((((...((((((((((.(((((((....((.(((((.((.....))..))))))).))))))).))))))))))..))))))).......))))))) | 0.995 -64.11 | ||||||||||
| mouse | (((((((((((((...((((((((((.(((((((....((.(((((............))))))).))))))).))))))))))..)))))))).......))))) | 1.000 -57.91 | ||||||||||
| rat | chromosome:1:156887513:156887607:1 | Same_strand|Boundary_non-coding|ENSRNOT00000040886|ENSRNOG00000030404 ## Same_strand|Intronic_non-coding|ENSRNOT00000055313|ENSRNOG00000030404 ## Same_strand|Exonic_non-coding|ENSRNOT00000053629|ENSRNOG00000035506 ## ENSRNOG00000035506|miRNA|rno-mir-326|rno-mir-326 [Source:miRBase;Acc:MI0000599] ## ENSRNOG00000030404|protein_coding|Arrb1|Beta-arrestin-1 (Arrestin beta 1). [Source:UniProtKB/Swiss-Prot;Acc:P29066] ## {MIR: rno-mir-326} |
| human | chromosome:11:74723774:74723881:-1 | Same_strand|Intronic_coding|ENST00000360025|ENSG00000137486|protein_coding|Beta-arrestin-1 (Arrestin beta-1) [Source:UniProtKB/Swiss-Prot;Acc:P49407] ## Same_strand|Boundary_non-coding|ENST00000362220|ENSG00000199090|miRNA|hsa-mir-326 [Source:miRBase;Acc:MI0000808] ## {Repeats: Arthur1 1 class=DNA/Tip100} ## {MIR: hsa-mir-326} |
| mouse | chromosome:7:106700777:106700882:1 | Same_strand|Intronic_coding|ENSMUST00000032995|ENSMUSG00000018909|protein_coding|arrestin, beta 1 Gene [Source:MGI Symbol;Acc:MGI:99473] ## Same_strand|Boundary_non-coding|ENSMUST00000083637|ENSMUSG00000065571|miRNA|mmu-mir-326 [Source:miRBase;Acc:MI0000598] ## {MIR: mmu-mir-326} |
rno-mir-298
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-298 5arm | 54 | 32 | 1 | 1 | 8 | 16 | 3 | 9 | 0 | 0 |
| rno-mir-298 3arm | 19 | 18 | 0 | 0 | 5 | 2 | 7 | 2 | 1 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| rno-mir-298 5arm | 0.002 | 0.001 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0 | 0 |
| rno-mir-298 3arm | 0.001 | 0.001 | 0 | 0 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0 |
sblock7797 (miRBase rno-mir-298) [miRNAknown_rep_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase rno-mir-298 | 0.001 | no | LTR/ERVL | 0.47/0.67 | 18/25/0.60 | 0.0 0.6 | 2.1 1.1 | 76 38 | 0 0 | 8 7 | 0 0 | 10 9 | 7 6 | 5arm 3arm | 1 1 | nd nd | 0.00 0.09 | 0 1 | 178 | 9 | 2 | 0 |
| Located in cluster 47: rno-mir-296, rno-mir-298 |
| reads | miRBase family seed | ||||||||||
| seed | -------------------------GCAGAGG-------------------------------------------------------------------------------- | 121 | miR-298 | ||||||||
| seed | ------------------------------------------------------------------GGAACUA--------------------------------------- | 34 | novel | ||||||||
| seed | -----------------------------------------------------------------AGGAACU---------------------------------------- | 20 | novel | ||||||||
| seed | -----------------------------AGGAGGG---------------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ---------------------------AGAGGAG------------------------------------------------------------------------------ | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| rno-miR-298 | ------------------------GGCAGAGGAGGGCTGTTCTTCCC----------------------------------------------------------------- | 23 | 21 | 10 | - | - | 4 | 4 | 1 | 7 | - |
| ------------------------GGCAGAGGAGGGCTGTTCT--------------------------------------------------------------------- | 19 | 15 | 8 | - | 1 | 2 | 7 | 1 | - | - | |
| ------------------------GGCAGAGGAGGGCTGTTC---------------------------------------------------------------------- | 18 | 8 | 4 | 1 | - | 1 | 2 | 1 | - | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTCTG--------------------------- | 20 | 4 | - | - | - | 1 | 1 | 4 | - | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTCT---------------------------- | 19 | 3 | 3 | - | - | - | - | 1 | 1 | - | |
| ------------------------GGCAGAGGAGGGCTGTTCTTCC------------------------------------------------------------------ | 22 | 3 | 3 | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTC----------------------------- | 18 | 2 | 1 | - | - | 3 | - | 1 | - | - | |
| ----------------------------------------------------------------GAGGAACTAGCCTTCTCTCTG--------------------------- | 21 | 1 | 5 | - | - | 1 | - | - | - | - | |
| ------------------------GGCAGAGGAGGGCTGTTCTTC------------------------------------------------------------------- | 21 | 2 | 2 | - | - | - | 1 | - | 2 | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTCTGCT------------------------- | 22 | 3 | 2 | - | - | - | - | - | - | - | |
| ------------------------GGCAGAGGAGGGCTGTTCTT-------------------------------------------------------------------- | 20 | 1 | 3 | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------GAGGAACTAGCCTTCTCTCTGCT------------------------- | 23 | 3 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------GAGGAACTAGCCTTCTCTCTGC-------------------------- | 22 | 2 | 2 | - | - | - | - | - | - | - | |
| ------------------------GGCAGAGGAGGGCTGTTCTTCCCT---------------------------------------------------------------- | 24 | 2 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------GAGGAACTAGCCTTCTCTC----------------------------- | 19 | - | 2 | - | - | - | 1 | - | - | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTCTGC-------------------------- | 21 | - | 1 | - | - | - | - | 1 | - | 1 | |
| ----------------------------GAGGAGGGCTGTTCTTCCC----------------------------------------------------------------- | 19 | 2 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------GAGGAACTAGCCTTCTCTCT---------------------------- | 20 | - | 1 | - | - | - | - | - | 1 | - | |
| --------------------------CAGAGGAGGGCTGTTCTTCCC----------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | |
| ------------------------GGCAGAGGAGGGCTGTTCTTCCCTT--------------------------------------------------------------- | 25 | - | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------AGGAACTAGCCTTCTCTCTGCTT------------------------ | 23 | 1 | - | - | - | - | - | - | - | - | |
| rat | --------------CCAGGCCTTCGGCAGAGGAGGGCTGTTCTTCCCTTGGGTTTTATGACTGGGAGGAACTAGCCTTCTCTCTGCTTAGGAGTGG---------------- | ||||||||||
| human | ------------------------GGCAGAGGAGGGCTG----GCACCGGGATGCT--------GAAGGAC-------------GCTGGAGACTGGACCAGCTGCCACTGCT | ||||||||||
| mouse | GAGGCATAAGAGGCCCAGGCCTTTGGCAGAGGAGGGCTGTTCTTCCCTTGAGTTTTATGACTGGGAGGAACTAGCCTTCTCTCAGCTTAGGAGTGGGCCAACAGCTTC---- | ||||||||||
| *************** * * * * * ** * ** *** ** *** | |||||||||||
| ..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ..... | ENSRNOT00000053689 ENSRNOG00000035566 rno-mir-298 | ||||||||||
| rat | (((..(((..(((((((((((((((((((((((...((((....))))))))))))).))))))).))))))).)))..))) | 1.000 -47.80 | |||||||||
| human | (((((.((..((((( (..((((....(( ..((... .))..)).)))).)))))).)).))))) | 1.000 -26.00 | |||||||||
| mouse | (((((......((((((..(((..(((.(((((((((((((((((((...((((....))))))))))))).))))))).))).))).)))..))))))....))))) | 1.000 -58.00 | |||||||||
| rat | chromosome:3:165194273:165194354:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000053689|ENSRNOG00000035566 ## ENSRNOG00000035566|miRNA|rno-mir-298|rno-mir-298 [Source:miRBase;Acc:MI0000969] ## {MIR: rno-mir-298} |
| human | chromosome:17:27023426:27023488:-1 | intergenic ## {Repeats: LTR50 -1 class=LTR/ERVL} |
| mouse | chromosome:2:174092993:174093100:-1 | Same_strand|Boundary_non-coding|ENSMUST00000083476|ENSMUSG00000065410|miRNA|mmu-mir-298 [Source:miRBase;Acc:MI0000398] ## {MIR: mmu-mir-298} |
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