miR-Intess: classification

other miRBase miRNAs

miRNAknown_RNA_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK (2 loci)

miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK (2 loci)

rno-mir-505

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-505 5arm	122	71	36	36	85	55	28	41	30	39
rno-mir-505 3arm	1583	1076	1244	2506.500	1143	699	712	1467	573	742
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-505 5arm	0.004	0.003	0.002	0.002	0.004	0.004	0.002	0.002	0.002	0.003
rno-mir-505 3arm	0.053	0.047	0.067	0.149	0.056	0.053	0.055	0.077	0.038	0.049

sblock12729 (miRBase rno-mir-505) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-505	0.001	no	no	0.44/0.56	18/26/0.76	0.0 0.3	0.9 1.0	333 3533	0 0	10 10	0 0	5 1	4 6	5arm 3arm	1 1	nd nd	0.09 0.10	1 1	12289	10	1	4

		reads	miRBase family seed
seed	-------------------------------------------------------------UCAACAC-----------------------------	5699	miR-505
seed	------------------------------------------------------------GUCAACA------------------------------	4319	novel
seed	--------------------------------------------------------------CAACACU----------------------------	1714	novel
seed	------------------------GGAGCCA------------------------------------------------------------------	535	novel
seed	---------------------------------------------------------------AACACUU---------------------------	14	novel
seed	-------------------------GAGCCAG-----------------------------------------------------------------	7	novel
seed	--------------------------AGCCAGG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------------------------------------------------GTCAACACTTGCTGGTTTCCTCTC-------------	24	206	146	370	536	190	94	217	408	135	102
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCCTC---------------	23	304	235	51	123	116	92	66	137	33	120
	------------------------------------------------------------GTCAACACTTGCTGGTTTCCTC---------------	22	160	109	114	243	102	58	65	125	58	69
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCCTCTC-------------	25	168	101	97	151	105	52	65	135	58	50
rno-miR-505	------------------------------------------------------------GTCAACACTTGCTGGTTTCC-----------------	20	116	80	106	224	102	46	71	138	41	43
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCC-----------------	21	155	91	44	79	87	44	30	84	19	66
	-------------------------------------------------------------TCAACACTTGCTGGTTTCCTCTC-------------	23	32	33	81	265	50	51	36	68	43	31
	-----------------------------------------------------------CGTCAACACTTGCTGGTT--------------------	18	167	104	23	78	87	51	20	76	36	43
	------------------------------------------------------------GTCAACACTTGCTGGTTTCCTCT--------------	23	15	6	77	120	38	19	21	35	8	23
	------------------------------------------------------------GTCAACACTTGCTGGTTTC------------------	19	29	24	46	80	42	25	19	31	15	22
	-------------------------------------------------------------TCAACACTTGCTGGTTTCCTC---------------	21	23	17	47	111	22	16	18	35	17	19
	-------------------------------------------------------------TCAACACTTGCTGGTTTCC-----------------	19	14	13	39	150	27	10	14	20	9	26
	------------------------------------------------------------GTCAACACTTGCTGGTTTCCT----------------	21	27	18	39	71	39	19	19	20	29	19
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTC------------------	20	44	26	10	34	28	39	18	41	7	29
	------------------------------------------------------------GTCAACACTTGCTGGTTT-------------------	18	16	17	20	36	21	23	13	29	14	28
	-------------------------------------------------------------TCAACACTTGCTGGTTTCCTCT--------------	22	11	6	30	105	12	9	4	20	3	7
	-----------------------GGGAGCCAGGAAGTATTGATG-----------------------------------------------------	21	39	18	22	6	33	20	11	13	5	14
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCCT----------------	22	44	28	13	10	18	10	4	12	32	7
	-----------------------GGGAGCCAGGAAGTATTGA-------------------------------------------------------	19	36	21	10	24	23	17	8	12	8	10
	-----------------------------------------------------------CGTCAACACTTGCTGGTTT-------------------	19	22	11	2	12	18	12	-	17	6	15
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCCTCT--------------	24	14	4	10	20	11	15	3	18	5	6
	-------------------------------------------------------------TCAACACTTGCTGGTTTCCT----------------	20	6	3	8	25	15	7	4	8	2	9
	-------------------------------------------------------------TCAACACTTGCTGGTTTC------------------	18	6	3	13	24	6	5	3	5	1	4
	-----------------------GGGAGCCAGGAAGTATTGAT------------------------------------------------------	20	16	12	1	4	5	6	2	11	2	3
	-----------------------GGGAGCCAGGAAGTATTG--------------------------------------------------------	18	6	9	-	2	8	6	1	1	7	3
	-----------------------GGGAGCCAGGAAGTATTGATGT----------------------------------------------------	22	13	6	-	-	4	4	3	2	4	3
	-----------------------GGGAGCCAGGAAGTATTGATGTT---------------------------------------------------	23	10	5	2	-	6	2	3	1	2	5
	------------------------------------------------------------GTCAACACTTGCTGGTTTCCTCTCT------------	25	2	-	-	5	1	1	1	2	-	1
	-------------------------------------------------------------TCAACACTTGCTGGTTTCCTCTCT------------	24	-	1	2	2	4	1	-	1	1	1
	------------------------GGAGCCAGGAAGTATTGAT------------------------------------------------------	19	1	-	-	-	2	-	-	1	2	-
	--------------------------------------------------------------CAACACTTGCTGGTTTCCTCTC-------------	22	1	-	-	1	-	-	-	1	1	-
	-----------------------GGGAGCCAGGAAGTATTGATGTTTC-------------------------------------------------	25	-	-	1	-	3	-	-	-	-	-
	--------------------------------------------------------------CAACACTTGCTGGTTTCCTCT--------------	21	-	-	1	1	1	-	-	-	-	-
	--------------------------------------------------------------CAACACTTGCTGGTTTCCTC---------------	20	-	-	1	-	-	-	-	1	-	1
	--------------------------------------------------------------CAACACTTGCTGGTTTCCT----------------	19	-	-	-	-	1	-	1	-	-	1
	-------------------------GAGCCAGGAAGTATTGATG-----------------------------------------------------	19	-	-	-	-	1	-	-	-	-	-
	--------------------------------------------------------------CAACACTTGCTGGTTTCC-----------------	18	-	-	-	1	-	-	-	-	-	-
	-----------------------GGGAGCCAGGAAGTATTGATGTTT--------------------------------------------------	24	-	-	-	-	-	-	-	-	-	1
	------------------------GGAGCCAGGAAGTATTGATGT----------------------------------------------------	21	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------------CGTCAACACTTGCTGGTTTCCTCTCT------------	26	1	-	-	-	-	-	-	-	-	-
rat	------------------AGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTCCTCTCT------------
human	TGGTAAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGTTTAGCGTCAACACTTGCTGGTTTCCTCTCTGGAGCATCGCCA
mouse	--------TGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA---
	********************************** ******************* ****
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000054392 ENSRNOG00000036269 rno-mir-505
rat	((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).))	1.000 -33.30
human	.(((.....(((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).)))))))).	1.000 -47.90
mouse	.(((((..((((.(((..((((((.((((.((((((((.((....))..)))))))).)))).))))))..))).)))).))))).	1.000 -43.10

rat	chromosome:X:145928998:145929064:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000054392\|ENSRNOG00000036269 ## ENSRNOG00000036269\|miRNA\|rno-mir-505\|rno-mir-505 [Source:miRBase;Acc:MI0003720] ## {MIR: rno-mir-505}
human	chromosome:X:138833969:138834065:-1	Same_strand\|Intronic_coding\|ENST00000370557\|ENSG00000101974\|protein_coding\|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## Same_strand\|Boundary_non-coding\|ENST00000370543\|ENSG00000101974\|protein_coding\|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## {MIR: hsa-mir-505}
mouse	chromosome:X:57647578:57647663:-1	Same_strand\|Intronic_coding\|ENSMUST00000101527\|ENSMUSG00000062949\|protein_coding\|ATPase, class VI, type 11C Gene [Source:MGI Symbol;Acc:MGI:1859661] ## Same_strand\|Exonic_non-coding\|ENSMUST00000093573\|ENSMUSG00000070081\|miRNA\|mmu-mir-505 [Source:miRBase;Acc:MI0004706] ## {MIR: mmu-mir-505}

rno-mir-24

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24 5arm	1169	934	486	579	1688	1320	2008	3510	1570	1613
rno-mir-24 3arm	163316.500	117469	71756	59069	108373	64886	177805	285232	147188	104729
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24 5arm	0.039	0.041	0.026	0.034	0.082	0.100	0.156	0.185	0.104	0.107
rno-mir-24 3arm	5.428	5.127	3.886	3.503	5.278	4.918	13.829	15.010	9.704	6.968

sblock4979 (miRBase rno-mir-24-1) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-24-1	0.004	no	no	0.44/0.61	18/25/0.76	0.0 0.0	0.0 0.3	548 674058	0 0	10 10	0 0	5 3	5 2	5arm 3arm	1 2	nd nd	0.22 0.17	2 1	1300891	10	-2	2

Clusters
Located in cluster 27: rno-mir-24, rno-mir-27b, rno-mir-23b

Families
Member of family miR-24 (seed UGCCUAC): rno-mir-24, rno-mir-24

		reads	miRBase family seed
seed	------------------------------------------------------------GGCUCAG--------------------------------	1226335	miR-24
seed	-------------------------------------------------------------GCUCAGU-------------------------------	66865	novel
seed	--------------------------------------------------------------CUCAGUU------------------------------	5990	novel
seed	----------------------UGCCUAC----------------------------------------------------------------------	731	miR-24
seed	-----------------------------------------------------------UGGCUCA---------------------------------	504	novel
seed	---------------------GUGCCUA-----------------------------------------------------------------------	296	novel
seed	---------------------------------------------------------------UCAGUUC-----------------------------	74	novel
seed	----------------------------------------------------------------CAGUUCA----------------------------	50	novel
seed	-----------------------GCCUACU---------------------------------------------------------------------	44	novel
seed	-----------------------------------------------------------------AGUUCAG---------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-miR-24	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAG------------------	22	93384	70918	36774	28985	56700	34074	95472	148917	86415	63460
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGA----------------------	18	24076	15934	14937	13087	20820	14513	28434	58792	19616	13100
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACA-------------------	21	15358	9926	5399	4108	8662	5547	15238	21717	12692	10395
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAAC--------------------	20	14988	9638	5953	5675	9002	4449	14625	19310	10785	7546
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAA---------------------	19	8841	5884	3857	3650	5500	2907	9311	15870	7128	5000
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAG------------------	21	3296	2611	2539	1743	4142	1969	8157	11483	6083	3069
	------------------------------------------------------------GGCTCAGTTCAGCAGGAAC--------------------	19	708	680	597	450	1102	413	2044	2860	1073	503
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGG-----------------	23	728	499	469	362	605	258	1127	1366	808	291
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACA-------------------	20	386	306	284	220	473	208	930	1408	641	452
	------------------------------------------------------------GGCTCAGTTCAGCAGGAA---------------------	18	347	288	233	187	468	147	839	1362	432	218
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAG------------------	20	434	293	322	276	290	145	568	747	512	305
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGA----------------	24	204	129	81	73	121	34	224	308	255	119
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGG-----------------	22	80	66	56	35	129	34	175	287	168	32
	-----------------------------------------------------------TGGCTCAGTTCAGCAGGAACAGGAG---------------	25	107	32	53	66	68	26	152	275	113	13
	-------------------------------------------------------------GCTCAGTTCAGCAGGAAC--------------------	18	73	61	45	38	55	30	118	119	60	53
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACA-------------------	19	76	52	51	32	48	21	141	113	63	45
	---------------------GTGCCTACTGAGCTGATA------------------------------------------------------------	18	94	48	13	15	68	56	39	107	67	69
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGG-----------------	21	91	60	46	21	30	17	88	84	91	23
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGA----------------	23	33	15	13	18	89	29	38	67	137	10
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGA----------------	22	35	28	25	13	8	-	41	31	36	23
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAG------------------	23	22	12	7	1	9	16	15	33	17	23
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACA-------------------	22	15	13	5	6	19	12	11	10	14	11
	--------------------GGTGCCTACTGAGCTGATATCA---------------------------------------------------------	22	24	3	5	6	3	1	10	25	5	24
	---------------------GTGCCTACTGAGCTGATATC----------------------------------------------------------	20	30	7	8	4	5	5	5	16	6	20
	--------------------GGTGCCTACTGAGCTGATA------------------------------------------------------------	19	13	10	3	4	6	2	10	15	3	14
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAAC--------------------	21	12	2	1	4	5	12	10	9	11	5
	--------------------GGTGCCTACTGAGCTGATATC----------------------------------------------------------	21	14	4	3	3	6	-	5	10	6	13
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGA----------------------	19	7	3	1	7	4	6	5	10	8	12
	--------------------------------------------------------------CTCAGTTCAGCAGGAACAG------------------	19	2	2	3	3	4	4	9	18	13	4
	----------------------------------------------------------CTGGCTCAGTTCAGCAGG-----------------------	18	5	6	2	1	7	5	10	6	11	6
	---------------------------------------------------------------TCAGTTCAGCAGGAACAG------------------	18	5	5	1	4	3	4	10	14	-	4
	---------------------GTGCCTACTGAGCTGATATCA---------------------------------------------------------	21	7	3	2	1	2	2	1	7	2	12
	--------------------GGTGCCTACTGAGCTGAT-------------------------------------------------------------	18	6	10	-	3	-	2	6	7	2	3
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAA---------------------	20	-	2	2	1	6	4	6	10	2	4
	----------------------TGCCTACTGAGCTGATATCA---------------------------------------------------------	20	5	1	1	2	1	2	2	6	1	3
	----------------------TGCCTACTGAGCTGATATC----------------------------------------------------------	19	1	2	2	-	-	-	1	3	2	3
	-------------------------------------------------------------GCTCAGTTCAGCAGGAACAGGAG---------------	23	1	-	-	-	1	-	2	4	2	3
	--------------------------------------------------------------CTCAGTTCAGCAGGAACA-------------------	18	1	2	-	1	1	1	2	2	1	-
	--------------------GGTGCCTACTGAGCTGATAT-----------------------------------------------------------	20	-	-	-	1	-	-	2	2	1	-
	---------------------GTGCCTACTGAGCTGATAT-----------------------------------------------------------	19	1	-	-	-	-	-	2	1	1	1
	---------------------GTGCCTACTGAGCTGATATCAGT-------------------------------------------------------	23	-	1	-	-	1	-	-	1	1	-
	----------------------------------------------------------CTGGCTCAGTTCAGCAGGAACAGG-----------------	24	-	1	-	-	1	1	-	-	-	-
	------------------------------------------------------------GGCTCAGTTCAGCAGGAACAGGAG---------------	24	-	-	-	-	-	-	3	-	-	-
	----------------------TGCCTACTGAGCTGATAT-----------------------------------------------------------	18	-	1	-	1	-	-	-	-	1	-
	----------------------TGCCTACTGAGCTGATATCAG--------------------------------------------------------	21	-	-	-	-	-	-	1	-	-	1
	----------------------------------------------------------------CAGTTCAGCAGGAACAGG-----------------	18	-	-	-	1	1	-	-	-	-	-
	----------------------TGCCTACTGAGCTGATATCAGT-------------------------------------------------------	22	-	-	-	-	-	-	-	1	-	-
	--------------------GGTGCCTACTGAGCTGATATCAGT-------------------------------------------------------	24	-	-	-	1	-	-	-	-	-	-
	--------------------------------------------------------------CTCAGTTCAGCAGGAACAGGAG---------------	22	-	-	-	1	-	-	-	-	-	-
rno-miR-24-1*	---------------------GTGCCTACTGAGCTGATATCAG--------------------------------------------------------	22	-	-	-	-	-	-	-	-	-	-
rat	----------------CTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTCACACACTGGCTCAGTTCAGCAGGAACAGGAG---------------
human	-------------------CGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAG------------------
mouse	TGTGATTGGACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTCACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTTGAGCA
	******************************* **************************
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053691 ENSRNOG00000035568 rno-mir-24-1
rat	((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))))	1.000 -26.32
human	..((.(((.(((((((((..(((((.............))))).))))))))).))).))..	1.000 -20.62
mouse	.((....((...((..((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).)))).))...))....)).	0.942 -30.82

rat	chromosome:17:7350971:7351038:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053691\|ENSRNOG00000035568 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000053691\|ENSRNOG00000035568 ## ENSRNOG00000035568\|miRNA\|rno-mir-24-1\|rno-mir-24-1 [Source:miRBase;Acc:MI0000854] ## {MIR: rno-mir-24-1}
human	chromosome:9:96888104:96888211:1	Same_strand\|Intronic_non-coding\|ENST00000395357\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Same_strand\|Boundary_non-coding\|ENST00000395356\|ENSG00000148120\|protein_coding\|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {MIR: hsa-mir-24-1}
mouse	chromosome:13:63402500:63402598:1	Same_strand\|Intronic_coding\|ENSMUST00000060660\|ENSMUSG00000056199\|protein_coding\| ## Same_strand\|Intronic_non-coding\|ENSMUST00000021911\|ENSMUSG00000021458\|protein_coding\|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## Same_strand\|Boundary_non-coding\|ENSMUST00000091560\|ENSMUSG00000021458\|protein_coding\|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## {MIR: mmu-mir-24-1}

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK (2 loci)

rno-mir-187

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-187 5arm	270	140	1	0	32	8	0	4	29	13
rno-mir-187 3arm	5222	2997	55	59	1154	582	49	55	526	369
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-187 5arm	0.009	0.006	0.000	0	0.002	0.001	0	0.000	0.002	0.001
rno-mir-187 3arm	0.174	0.131	0.003	0.003	0.056	0.044	0.004	0.003	0.035	0.025

sblock5445 (miRBase rno-mir-187) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-187	0.014	no	no	0.50/0.67	18/26/0.58	0.3 0.0	0.5 1.1	227 5681	0 0	8 10	0 0	28 18	4 6	5arm 3arm	1 1	nd nd	0.11 0.11	1 1	11565	10	0	0

		reads	miRBase family seed
seed	------------------------------------------------------------------CGUGUCU-------------------------------	9278	miR-187
seed	-------------------------------------------------------------------GUGUCUU------------------------------	1114	novel
seed	-----------------------------------------------------------------UCGUGUC--------------------------------	666	novel
seed	-----------------------------GGCUACA--------------------------------------------------------------------	369	novel
seed	-------------------------------CUACAAC------------------------------------------------------------------	101	novel
seed	------------------------------GCUACAA-------------------------------------------------------------------	25	novel
seed	--------------------------------------------------------------------UGUCUUG-----------------------------	5	novel
seed	----------------------------------------------------------------CUCGUGU---------------------------------	4	novel
seed	---------------------------------------------------------------------GUCUUGU----------------------------	1	novel
seed	---------------------------------ACAACAC----------------------------------------------------------------	1	novel
seed	--------------------------------UACAACA-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCG------------------	21	1270	721	15	9	315	169	14	16	149	96
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGC--------------------	19	1166	660	7	12	275	139	16	17	106	125
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCC-------------------	20	849	521	8	22	244	96	5	10	96	68
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAG---------------------	18	494	256	2	9	104	59	3	3	55	19
rno-miR-187	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCGG-----------------	22	374	192	3	2	53	28	3	1	30	18
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGCC-------------------	19	248	138	2	1	33	20	1	3	20	14
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCGGA----------------	23	162	89	4	-	28	15	3	-	10	7
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGCCGG-----------------	21	105	75	1	-	16	3	2	1	8	6
	----------------------------AGGCTACAACACAGGACCC---------------------------------------------------------	19	102	52	-	-	14	3	-	2	21	6
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCA----------------------	18	95	56	2	-	14	3	-	-	5	2
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAGCCG------------------	22	80	44	-	1	15	16	-	-	11	3
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGCCG------------------	20	82	47	2	1	15	8	1	-	9	1
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAG---------------------	19	67	46	1	-	9	11	-	2	6	3
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAGCC-------------------	21	72	50	3	1	11	2	-	-	5	-
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGC--------------------	18	66	46	2	1	11	7	-	-	7	1
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGCCGGA----------------	22	54	25	-	-	4	3	1	1	5	3
	----------------------------AGGCTACAACACAGGACC----------------------------------------------------------	18	40	10	-	-	4	1	-	1	2	5
	------------------------------GCTACAACACAGGACCCGG-------------------------------------------------------	19	33	17	-	-	3	-	-	-	-	-
	----------------------------AGGCTACAACACAGGACCCGG-------------------------------------------------------	21	20	16	-	-	6	1	-	-	4	-
	----------------------------AGGCTACAACACAGGACCCG--------------------------------------------------------	20	26	8	1	-	3	2	-	1	1	2
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCGGAG---------------	24	15	10	-	-	3	3	-	-	3	-
	------------------------------GCTACAACACAGGACCCG--------------------------------------------------------	18	13	14	-	-	1	-	-	-	-	-
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAGC--------------------	20	6	11	3	-	2	-	-	-	1	-
	------------------------------------------------------------------CGTGTCTTGTGTTGCAGCCGGAG---------------	23	9	1	-	-	2	-	-	-	-	2
	------------------------------GCTACAACACAGGACCCGGG------------------------------------------------------	20	7	5	-	-	-	1	-	-	-	-
	----------------------------AGGCTACAACACAGGACCCGGG------------------------------------------------------	22	6	4	-	-	-	-	-	-	-	-
	-----------------------------GGCTACAACACAGGACCC---------------------------------------------------------	18	6	1	-	-	-	-	-	-	1	-
	-----------------------------GGCTACAACACAGGACCCG--------------------------------------------------------	19	3	4	-	-	-	-	-	-	-	-
	-----------------------------GGCTACAACACAGGACCCGG-------------------------------------------------------	20	4	3	-	-	-	-	-	-	-	-
	------------------------------GCTACAACACAGGACCCGGGC-----------------------------------------------------	21	5	2	-	-	-	-	-	-	-	-
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAGCCGG-----------------	23	3	3	-	-	-	-	-	-	-	-
	----------------------------AGGCTACAACACAGGACCCGGGC-----------------------------------------------------	23	4	1	-	-	-	-	-	-	-	-
	-----------------------------GGCTACAACACAGGACCCGGG------------------------------------------------------	21	1	2	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------GTGTCTTGTGTTGCAGCC-------------------	18	-	3	-	-	-	-	-	-	-	-
	---------------------------------------------------------------CCTCGTGTCTTGTGTTGC-----------------------	18	2	-	-	-	-	-	-	-	-	-
	---------------------------------------------------------------CCTCGTGTCTTGTGTTGCAGCC-------------------	22	-	1	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCGGAGG--------------	25	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------------------TCGTGTCTTGTGTTGCAGCCGGAGGG-------------	26	-	1	-	-	-	-	-	-	-	-
	----------------------------------------------------------------CTCGTGTCTTGTGTTGCAGCCGGA----------------	24	1	-	-	-	-	-	-	-	-	-
	--------------------------------TACAACACAGGACCCGGGC-----------------------------------------------------	19	-	-	-	-	1	-	-	-	-	-
	---------------------------------------------------------------CCTCGTGTCTTGTGTTGCAG---------------------	20	1	-	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------GTGTCTTGTGTTGCAGCCG------------------	19	-	1	-	-	-	-	-	-	-	-
	-------------------------------------------------------------------GTGTCTTGTGTTGCAGCCGG-----------------	20	-	-	-	-	-	-	-	1	-	-
	--------------------------------------------------------------------TGTCTTGTGTTGCAGCCG------------------	18	-	-	-	-	-	-	-	-	-	1
	-------------------------------CTACAACACAGGACCCGG-------------------------------------------------------	18	-	1	-	-	-	-	-	-	-	-
rat	GGGCTCACAGGACACAATGCGGATCCTCAGGCTACAACACAGGACCCGGGCGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCGGAGGGACGCAGGTCTGCA
human	----------------------------GGGCTACAACACAGGACCCGGGCGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCG------------------
mouse	----------------------------AGGCTACAACACAGGACCCGGGCGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCG------------------
	*********************************************************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000053644 ENSRNOG00000035521 rno-mir-187
rat	..((.....((((....((((..(((((.((((.(((((((((((.((((.((......).).)).)).))))))))))).)))).))))).)))).)))))).	1.000 -47.50
human	.((((.(((((((((((.((((..............)))).))))))))))).)))).	0.955 -27.64
mouse	.((((.(((((((((((.((((..............)))).))))))))))).)))).	0.955 -27.84

rat	chromosome:18:16219576:16219679:-1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053644\|ENSRNOG00000035521 ## ENSRNOG00000035521\|miRNA\|rno-mir-187\|rno-mir-187 [Source:miRBase;Acc:MI0000932] ## {MIR: rno-mir-187}
human	chromosome:18:31738759:31738902:-1	Same_strand\|Boundary_non-coding\|ENST00000385062\|ENSG00000207797\|miRNA\|hsa-mir-187 [Source:miRBase;Acc:MI0000274] ## {SimpF: rank = 1 -1 FirstEF} ## {MIR: hsa-mir-187}
mouse	chromosome:18:24587574:24587717:-1	Same_strand\|Boundary_non-coding\|ENSMUST00000083598\|ENSMUSG00000065532\|miRNA\|mmu-mir-187 [Source:miRBase;Acc:MI0000229] ## {MIR: mmu-mir-187}

rno-mir-147

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-147 5arm	0	2.500	1	1	6.500	12.500	0	1.500	3	2.500
rno-mir-147 3arm	4	3	14	19	110	154	7	7	14	3
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-147 5arm	0	0.000	0.000	0.000	0.000	0.001	0	0.000	0.000	0.000
rno-mir-147 3arm	0.000	0.000	0.001	0.001	0.005	0.012	0.001	0.000	0.001	0.000

sblock8132 (miRBase rno-mir-147) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-147	0.011	no	no	0.42/0.55	18/24/0.34	0.0 0.0	1.0 0.3	20 171	0 0	8 10	0 0	11 13	1 8	5arm 3arm	2 2	nd nd	0.26 0.21	3 2	375	10	4	0

		reads	miRBase family seed
seed	---------------------------------------------------------------UGUGCGG-------------------------------------------	319	miR-147
seed	--------------------------GGAAACA--------------------------------------------------------------------------------	36	novel
seed	--------------------------------------------------------------GUGUGCG--------------------------------------------	16	novel
seed	-------------------------UGGAAAC---------------------------------------------------------------------------------	2	novel
seed	----------------------UAGUGGA------------------------------------------------------------------------------------	1	novel
seed	---------------------------GAAACAC-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--------------------------------------------------------------GTGTGCGGAAATGCTTCT---------------------------------	18	1	2	3	6	73	54	2	5	6	1
	--------------------------------------------------------------GTGTGCGGAAATGCTTCTG--------------------------------	19	1	-	3	1	20	44	2	1	3	1
	--------------------------------------------------------------GTGTGCGGAAATGCTTCTGCT------------------------------	21	2	-	-	4	8	13	-	-	2	-
	--------------------------------------------------------------GTGTGCGGAAATGCTTCTGC-------------------------------	20	-	-	2	5	3	16	-	-	-	-
	-------------------------TGGAAACACTTCTGCACAAACTC-----------------------------------------------------------------	23	-	2	1	-	6	7	-	1	1	1
rno-miR-147	--------------------------------------------------------------GTGTGCGGAAATGCTTCTGCTA-----------------------------	22	-	-	2	2	1	9	2	-	1	-
	--------------------------------------------------------------GTGTGCGGAAATGCTTCTGCTAC----------------------------	23	-	1	1	1	1	8	-	-	2	-
	-------------------------------------------------------------AGTGTGCGGAAATGCTTCT---------------------------------	19	-	-	1	-	3	2	-	1	-	-
	-------------------------TGGAAACACTTCTGCACAAAC-------------------------------------------------------------------	21	-	-	-	1	-	4	-	-	-	1
	-------------------------------------------------------------AGTGTGCGGAAATGCTTCTGCT------------------------------	22	-	-	2	-	-	2	1	-	-	-
	-------------------------TGGAAACACTTCTGCACA----------------------------------------------------------------------	18	-	1	-	1	1	1	-	1	-	-
	-------------------------TGGAAACACTTCTGCACAA---------------------------------------------------------------------	19	-	-	-	-	-	3	-	-	-	2
	--------------------------------------------------------------GTGTGCGGAAATGCTTCTGCTACA---------------------------	24	-	-	-	-	1	2	-	-	-	1
	------------------------GTGGAAACACTTCTGCACAAAC-------------------------------------------------------------------	22	-	-	-	-	-	-	-	-	2	-
	-------------------------------------------------------------AGTGTGCGGAAATGCTTC----------------------------------	18	-	-	-	-	-	2	-	-	-	-
	-------------------------TGGAAACACTTCTGCACAAACTCG----------------------------------------------------------------	24	-	-	-	-	-	1	-	-	-	-
	---------------------CTAGTGGAAACACTTCTGCAC-----------------------------------------------------------------------	21	-	-	-	-	-	1	-	-	-	-
	-------------------------------------------------------------AGTGTGCGGAAATGCTTCTG--------------------------------	20	-	-	-	-	-	1	-	-	-	-
	--------------------------GGAAACACTTCTGCACAAACTC-----------------------------------------------------------------	22	-	-	-	-	-	-	-	-	1	-
	-------------------------------------------------------------AGTGTGCGGAAATGCTTCTGC-------------------------------	21	-	-	-	-	-	1	-	-	-	-
rat	--------------TATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTT-GATGCCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGG-------------------
human	-CTGAAGAGTACTCTATAAATCTAGTGGAAACATTTCTGCACAAACTAGATTCTGGACACCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGTCTACATTTTTTGG
mouse	TCCAAAGAACACTCTATGAATCTAGTGGAAACATTTCTGCACAAACTAGATGTT-GATGCCAGTGTGCGGAAATGCTTCTGCTACATTTGTAGGGT-----------------
	* *********** ********* * * ************************** **
	>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	ENSRNOT00000044879 ENSRNOG00000029643 MGC105649
	..... >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000054556 ENSRNOG00000036445 rno-mir-147
rat	((.((((.(((..(((.((.(((((((((...(((....) ))......))))))))).)).)))..))).)))).))..	1.000 -22.80
human	.((.(((..((((((.((((.(((..(((.((((((((((((.........((((...)))))))))))))))).)))..))).)))).))))))...))).))........	0.936 -38.80
mouse	..........((((((..(((.(((..(((.(((((((((((((((.....))) ........)))))))))))).)))..))).)))..))))))	0.930 -36.30

rat	chromosome:3:109612639:109612717:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000044879\|ENSRNOG00000029643 ## ENSRNOG00000036445\|miRNA\|rno-mir-147\|rno-mir-147 [Source:miRBase;Acc:MI0006130] ## ENSRNOG00000029643\|protein_coding\|MGC105649\|Normal mucosa of esophagus-specific gene 1 protein. [Source:UniProtKB/Swiss-Prot;Acc:Q5RK28] ## {MIR: rno-mir-147}
human	chromosome:15:43512527:43512638:1	Same_strand\|Intronic_non-coding\|ENST00000396655\|ENSG00000171763\|protein_coding\|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand\|Boundary_non-coding\|ENST00000305560\|ENSG00000171763\|protein_coding\|Spermatogenesis-associated protein 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9BVQ7] ## Same_strand\|Exonic_non-coding\|ENST00000344300\|ENSG00000166920\|protein_coding\|Normal mucosa of esophagus-specific gene 1 protein (Protein FOAP-11) [Source:UniProtKB/Swiss-Prot;Acc:Q9C002] ## {MIR: hsa-mir-147b}
mouse	chromosome:2:122466525:122466619:1	Same_strand\|Exonic_non-coding\|ENSMUST00000110512\|ENSMUSG00000033213\|protein_coding\|Normal mucosa of esophagus-specific gene 1 protein [Source:UniProtKB/Swiss-Prot;Acc:Q810Q5] ## Same_strand\|Boundary_non-coding\|ENSMUST00000102354\|ENSMUSG00000076309\|miRNA\|mmu-mir-147 [Source:miRBase;Acc:MI0005482] ## {MIR: mmu-mir-147}

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK (2 loci)

rno-mir-376a

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376a 5arm	353	329	1	0	1	2	1	1	4	7
rno-mir-376a 3arm	891	852	2	0	5	3	0	1	5	11
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376a 5arm	0.012	0.014	0.000	0	0.000	0.000	0.000	0.000	0.000	0.000
rno-mir-376a 3arm	0.030	0.037	0.000	0	0.000	0.000	0	0.000	0.000	0.001

sblock10504 (miRBase rno-mir-376a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-376a	0.001	no	no	0.33/0.50	18/25/0.59	0.0 0.0	0.0 0.9	335 1473	0 0	9 8	0 0	12 11	-2 -1	5arm_loop 3arm	1 1	nd nd	0.27 0.14	3 1	2469	9	1	1

Clusters
Located in cluster 72: rno-mir-376c, rno-mir-376b, rno-mir-376a, rno-mir-300

		reads	miRBase family seed
seed	---------------------------------------------------UCGUAGA------------------------	1757	miR-376a
seed	-------------GUAGAUU--------------------------------------------------------------	546	miR-376a*
seed	--------------UAGAUUC-------------------------------------------------------------	119	novel
seed	---------------AGAUUCU------------------------------------------------------------	18	novel
seed	------------GGUAGAU---------------------------------------------------------------	14	novel
seed	--------------------------------------------------AUCGUAG-------------------------	6	novel
seed	-----------------------------------------------------GUAGAGG----------------------	4	novel
seed	-----------AGGUAGA----------------------------------------------------------------	2	novel
seed	----------------------------------------------------CGUAGAG-----------------------	1	novel
seed	-----------------------------------------------CUAAUCG----------------------------	1	novel
seed	------------------------------------------------------UAGAGGA---------------------	1	miR-877
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--------------------------------------------------ATCGTAGAGGAAAATCCAC-------------	19	387	379	1	2	1	-	-	3	4
rno-miR-376a	--------------------------------------------------ATCGTAGAGGAAAATCCACGT-----------	21	281	285	1	1	2	-	1	1	2
	------------GGTAGATTCTCCTTCTATGAGT------------------------------------------------	22	173	162	-	1	-	1	-	4	5
	--------------------------------------------------ATCGTAGAGGAAAATCCACG------------	20	141	98	-	-	-	-	-	-	1
	--------------------------------------------------ATCGTAGAGGAAAATCCA--------------	18	63	61	-	1	-	-	-	-	1
	-------------GTAGATTCTCCTTCTATGAGT------------------------------------------------	21	39	30	1	-	1	-	1	-	-
rno-miR-376a*	------------GGTAGATTCTCCTTCTATGAG-------------------------------------------------	21	35	33	-	-	1	-	-	-	1
	------------GGTAGATTCTCCTTCTATGA--------------------------------------------------	20	20	26	-	-	-	-	-	-	1
	------------GGTAGATTCTCCTTCTAT----------------------------------------------------	18	27	13	-	-	-	-	-	-	-
	--------------------------------------------------ATCGTAGAGGAAAATCCACGTT----------	22	14	21	-	-	-	-	-	1	3
	------------GGTAGATTCTCCTTCTATG---------------------------------------------------	19	19	16	-	-	-	-	-	-	-
	-------------GTAGATTCTCCTTCTATGA--------------------------------------------------	19	14	7	-	-	-	-	-	-	-
	-------------GTAGATTCTCCTTCTATGAG-------------------------------------------------	20	5	11	-	-	-	-	-	-	-
	-----------AGGTAGATTCTCCTTCTATGAGT------------------------------------------------	23	8	4	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGAGTAC----------------------------------------------	22	3	7	-	-	-	-	-	-	-
	------------GGTAGATTCTCCTTCTATGAGTAC----------------------------------------------	24	2	5	-	-	-	-	-	-	-
	-------------GTAGATTCTCCTTCTATG---------------------------------------------------	18	1	5	-	-	-	-	-	-	-
	-------------GTAGATTCTCCTTCTATGAGTAC----------------------------------------------	23	2	2	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGAGT------------------------------------------------	20	-	3	-	-	-	-	-	-	-
	-------------------------------------------------AATCGTAGAGGAAAATCCACGT-----------	22	1	1	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGAG-------------------------------------------------	19	2	-	-	-	-	-	-	-	-
	----------------------------------------------------CGTAGAGGAAAATCCACG------------	18	1	1	-	-	-	-	-	-	-
	-------------------------------------------------AATCGTAGAGGAAAATCCAC-------------	20	1	1	-	-	-	-	-	-	-
	-------------------------------------------------AATCGTAGAGGAAAATCCA--------------	19	-	1	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGA--------------------------------------------------	18	1	-	-	-	-	-	-	-	-
	-----------AGGTAGATTCTCCTTCTA-----------------------------------------------------	18	-	1	-	-	-	-	-	-	-
	---------------------------------------------------TCGTAGAGGAAAATCCACGTTT---------	22	-	1	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGAGTA-----------------------------------------------	21	-	1	-	-	-	-	-	-	-
	--------------TAGATTCTCCTTCTATGAGTACAA--------------------------------------------	24	-	1	-	-	-	-	-	-	-
	----------------------------------------------ACTAATCGTAGAGGAAAATCCACGT-----------	25	1	-	-	-	-	-	-	-	-
	----------------------------------------------------CGTAGAGGAAAATCCACGT-----------	19	-	1	-	-	-	-	-	-	-
	-----------AGGTAGATTCTCCTTCTAT----------------------------------------------------	19	-	1	-	-	-	-	-	-	-
	--------------------------------------------------ATCGTAGAGGAAAATCCACGTTT---------	23	-	-	-	1	-	-	-	-	-
	----------AAGGTAGATTCTCCTTCT------------------------------------------------------	18	1	-	-	-	-	-	-	-	-
	----------------------------------------------------CGTAGAGGAAAATCCACGTT----------	20	-	1	-	-	-	-	-	-	-
	------------GGTAGATTCTCCTTCTATGAGTA-----------------------------------------------	23	-	1	-	-	-	-	-	-	-
	-----------------------------------------------------GTAGAGGAAAATCCACGT-----------	18	-	1	-	-	-	-	-	-	-
	----------AAGGTAGATTCTCCTTCTATGA--------------------------------------------------	22	1	-	-	-	-	-	-	-	-
	-------------------------------------------------AATCGTAGAGGAAAATCCACG------------	21	1	-	-	-	-	-	-	-	-
rat	TGATATTTAAAAGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGTTTTCAGTATCA
human	---------AAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTT---------
mouse	-----------AGGTAGATTCTCCTTCTATGAGTACAATATTAATGACTAATCGTAGAGGAAAATCCACGT-----------
	************************ * ***************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000053651 ENSRNOG00000035528 rno-mir-376a
rat	.((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).)))))).	1.000 -23.21
human	(((.((.((((.(((.(((((((...(((.....))).....)))))))))).)))).)).)))	1.000 -17.00
mouse	..((.((((.(((.(((((((...................)))))))))).)))).))..	1.000 -14.41

rat	chromosome:6:134404690:134404771:1	Same_strand\|Exonic_non-coding\|ENSRNOT00000053651\|ENSRNOG00000035528 ## ENSRNOG00000035528\|miRNA\|rno-mir-376a\|rno-mir-376a [Source:miRBase;Acc:MI0003545] ## {MIR: rno-mir-376a}
human	chromosome:14:100576874:100576937:1	intergenic ## {MIR: hsa-mir-376a-1}
mouse	chromosome:12:110961964:110962085:1	Same_strand\|Boundary_non-coding\|ENSMUST00000093571\|ENSMUSG00000076043\|miRNA\|mmu-mir-376a [Source:miRBase;Acc:MI0000793] ## {MIR: mmu-mir-376a}

rno-mir-466c

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-466c 5arm	7	5	65.500	27.500	63	30	9	3.500	5.500	4.500
rno-mir-466c 3arm	0.040	0.118	1.408	0.502	0.222	0.050	0.040	0.046	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-466c 5arm	0.000	0.000	0.004	0.002	0.003	0.002	0.001	0.000	0.000	0.000
rno-mir-466c 3arm	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0	0

sblock5203 (miRBase rno-mir-466c) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-466c	0.001	no	no	0.32/0.44	18/24/0.65	0.0 0.2	1.9 0.6	179 27	0 0	10 8	0 0	10 9	-2 1	5arm 3arm	2 44	nd nd	0.10 0.09	1 1	347	10	3	3

Families
Member of family miR-466c (seed GUGAUGU): rno-mir-466c, sblock5204_cand, sblock5205_cand, block1134957_cand

		reads	miRBase family seed
seed	-----------GUG-------AUGU--------------------------------------------------------------------	272	miR-466c
seed	--------------------------------------------------------UAUACAU------------------------------	46	novel
seed	-------------------------------------------------------AUAUACA-------------------------------	15	novel
seed	---------------------------------------------------------AUACAUG-----------------------------	5	novel
seed	----------UGUG-------AUG---------------------------------------------------------------------	5	novel
seed	------------------------------------------------------CAUAUAC--------------------------------	2	novel
seed	----------------------------------------------------------UACAUGC----------------------------	1	novel
seed	------------UG-------AUGUG-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------TGTG-------ATGTGTGCATGTACA---------------------------------------------------------	19	5	1	14	17	16	6	5	3	1	-
	----------TGTG-------ATGTGTGCATGTACATGT------------------------------------------------------	22	1	1	21	4	18	7	4	1	2	1
	----------TGTG-------ATGTGTGCATGTAC----------------------------------------------------------	18	1	1	15	4	18	4	1	-	2	1
	----------TGTG-------ATGTGTGCATGTACATGTGT----------------------------------------------------	24	-	2	12	5	10	5	-	-	2	-
	----------TGTG-------ATGTGTGCATGTACATGTG-----------------------------------------------------	23	-	-	7	1	7	10	-	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC-----ACAC-----------	22	1	-	16	2	2	1	1	-	-	-
rno-miR-466c	----------TGTG-------ATGTGTGCATGTACATG-------------------------------------------------------	21	1	1	6	4	7	2	-	-	-	-
	----------TGTG-------ATGTGTGCATGTACAT--------------------------------------------------------	20	1	-	4	2	3	1	1	1	-	2
	------------------------------------------------------CATATACATGCACACATAC-----AC-------------	21	-	1	6	2	-	-	-	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC-----ACA------------	21	-	-	5	2	1	-	-	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC-----A--------------	19	-	-	1	4	-	1	-	1	-	-
	--------------------------------------------------------TATACATGCACACATAC-----ACAC-----------	21	-	-	2	3	-	-	-	-	-	-
	------------------------------------------------------CATATACATGCACACATAC-----ACAC-----------	23	-	-	2	2	-	-	-	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC-----ACACAC---------	24	-	1	2	-	1	-	-	-	-	-
	---------ATGTG-------ATGTGTGCATGTACATGT------------------------------------------------------	23	-	-	1	1	1	-	-	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC-----AC-------------	20	-	-	2	1	-	-	-	-	-	-
	------------------------------------------------------CATATACATGCACACATAC-----ACA------------	22	-	-	-	-	1	-	-	1	-	-
	-----------------------------------------------------ACATATACATGCACACATAC-----AC-------------	22	-	-	1	1	-	-	-	-	-	-
	-----------GTG-------ATGTGTGCATGTACATGT------------------------------------------------------	21	-	-	-	-	-	-	-	-	-	1
	---------ATGTG-------ATGTGTGCATGTACATG-------------------------------------------------------	22	-	-	-	-	-	-	1	-	-	-
	-------------------------------------------------------ATATACATGCACACATAC--------------------	18	-	-	1	-	-	-	-	-	-	-
	---------ATGTG-------ATGTGTGCATGTACATGTG-----------------------------------------------------	24	1	-	-	-	-	-	-	-	-	-
	---------------------------------------------------------ATACATGCACACATAC-----ACAC-----------	20	-	-	1	-	-	-	-	-	-	-
rat	CCTGTGTGTATGTG-------ATGTGTGCATGTACATGTGTGTATATGGAGAAACATATACATGCACACATAC-----ACACACACAGGCA--
mouse	----TGTGTATGTGTTGATGTGTGTGTACATGTACATGTGTGAATAT-GATATACATATACATACACGCACACATAAGACACATATGAGCACA
	******** * ********** * ******** * ***** * ***
	+++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ +++++	ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2
	.....>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>> .....	ENSRNOT00000062975 ENSRNOG00000041222 rno-mir-466c
rat	(((((((((.(((( .((((((((((((.((((..............)))).))))))))))))))) ).)))))))))..	1.000 -41.04
mouse	.(((((((((((.((((((((((..(((((.(((((((..... ..))))))).)))))..))))))))))..)))))))....)))).	0.996 -34.50

rat	chromosome:17:79270775:79270853:-1	Same_strand\|Boundary_non-coding\|ENSRNOT00000051529\|ENSRNOG00000029235 ## Same_strand\|Intronic_coding\|ENSRNOT00000042430\|ENSRNOG00000029235 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000062975\|ENSRNOG00000041222 ## ENSRNOG00000041222\|miRNA\|rno-mir-466c\|rno-mir-466c [Source:miRBase;Acc:MI0006114] ## ENSRNOG00000029235\|protein_coding\|Sfmbt2\|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: dust 79270820 79270845 0 class=dust,(CA)n 7 32 -1 class=Simple_repeat,trf 228 254 0 class=trf,(TG)n 2 66 -1 class=Simple_repeat,dust 79270782 79270796 0 class=dust,trf 266 291 0 class=trf,(TG)n 41 66 -1 class=Simple_repeat,trf 39 64 0 class=trf,trf 39 53 0 class=trf,(CA)n 1 50 -1 class=Simple_repeat} ## {MIR: rno-mir-466c}
mouse	chromosome:2:10417895:10417982:1	Same_strand\|Boundary_non-coding\|ENSMUST00000114864\|ENSMUSG00000061186\|protein_coding\|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## Same_strand\|Intronic_coding\|ENSMUST00000041105\|ENSMUSG00000061186\|protein_coding\|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TATATG)n 1 class=Simple_repeat,dust 0 class=dust,dust 0 class=dust} ## {MIR: mmu-mir-466b-7}

miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH (2 loci)

rno-mir-323

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-323 5arm	69	64	0	0	0	0	0	0	0	0
rno-mir-323 3arm	13644	11289	15	13	14	11	38	39	33	33
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-323 5arm	0.002	0.003	0	0	0	0	0	0	0	0
rno-mir-323 3arm	0.453	0.493	0.001	0.001	0.001	0.001	0.003	0.002	0.002	0.002

sblock10492 (miRBase rno-mir-323) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-323	0.003	no	no	0.44/0.73	18/25/0.66	0.0 2.0 0.0 0.5	0.9 3.7 0.0 1.2	121 3 1 22806	0 0 0 0	2 2 1 10	0 0 0 0	15 26 24 15	1 -16 -2 3	5arm 5arm_loop_3arm 3arm_loop 3arm	1 1 1 1	nd nd nd nd	0.32 0.52 0.39 0.29	4 8 4 4	25262	10	2	2

Clusters
Located in cluster 69: rno-mir-380, rno-mir-323, rno-mir-758, rno-mir-329

		reads	miRBase family seed
seed	--------------------------------------------------CACAUUA-----------------------------	13847	novel
seed	---------------------------------------------------ACAUUAC----------------------------	11180	miR-323
seed	----------------GGUGGUC---------------------------------------------------------------	130	miR-323*
seed	-------------------------------------------------GCACAUU------------------------------	81	novel
seed	----------------------------------------------------CAUUACA---------------------------	13	novel
seed	-----------------------------------------------------AUUACAC--------------------------	6	novel
seed	------------------------------CGUUCGC-------------------------------------------------	2	novel
seed	------------------------------------------------------UUACACG-------------------------	1	novel
seed	---------------------------GCGCGUU----------------------------------------------------	1	novel
seed	---------------------------------------------UGGCGCA----------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	-------------------------------------------------GCACATTACACGGTCGACCTCT---------------	22	2846	2177	4	3	5	2	7	12	8	16
	--------------------------------------------------CACATTACACGGTCGACCTC----------------	20	1711	1963	2	1	-	-	1	1	2	2
	-------------------------------------------------GCACATTACACGGTCGACC------------------	19	2089	1510	3	2	6	2	7	5	2	6
	-------------------------------------------------GCACATTACACGGTCGACCTC----------------	21	1890	1704	2	4	1	2	5	4	6	-
rno-miR-323	--------------------------------------------------CACATTACACGGTCGACCTCT---------------	21	2018	1437	3	3	-	3	10	3	8	6
	--------------------------------------------------CACATTACACGGTCGACC------------------	18	2012	1449	1	-	1	-	3	4	6	2
	-------------------------------------------------GCACATTACACGGTCGAC-------------------	18	477	470	-	-	-	2	2	7	-	-
	-------------------------------------------------GCACATTACACGGTCGACCT-----------------	20	262	230	-	-	1	-	1	-	-	1
	--------------------------------------------------CACATTACACGGTCGACCT-----------------	19	220	260	-	-	-	-	1	2	1	-
	-------------------------------------------------GCACATTACACGGTCGACCTCTT--------------	23	29	31	-	-	-	-	-	-	-	-
	---------------AGGTGGTCCGTGGCGCGTTC---------------------------------------------------	20	30	27	-	-	-	-	-	-	-	-
	--------------------------------------------------CACATTACACGGTCGACCTCTT--------------	22	19	17	-	-	-	-	1	-	-	-
	---------------AGGTGGTCCGTGGCGCGT-----------------------------------------------------	18	17	9	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGACCTCT---------------	23	16	8	-	-	-	-	-	-	-	-
rno-miR-323*	---------------AGGTGGTCCGTGGCGCGTTCGC-------------------------------------------------	22	13	11	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGACCTC----------------	22	10	11	-	-	-	-	-	-	-	-
	---------------AGGTGGTCCGTGGCGCGTTCG--------------------------------------------------	21	6	14	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGACC------------------	20	11	7	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGAC-------------------	19	8	3	-	-	-	-	-	-	-	-
	--------------------------------------------------CACATTACACGGTCGACCTCTTT-------------	23	6	-	-	-	-	-	-	1	-	-
	---------------------------------------------------ACATTACACGGTCGACCTCT---------------	20	6	-	-	-	-	-	-	-	-	-
	---------------------------------------------------ACATTACACGGTCGACCTC----------------	19	2	4	-	-	-	-	-	-	-	-
	-------------------------------------------------GCACATTACACGGTCGACCTCTTT-------------	24	4	-	-	-	-	-	-	-	-	-
	----------------------------------------------------CATTACACGGTCGACCTCT---------------	19	1	3	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGA--------------------	18	1	3	-	-	-	-	-	-	-	-
	---------------AGGTGGTCCGTGGCGCGTT----------------------------------------------------	19	2	1	-	-	-	-	-	-	-	-
	----------------------------------------------------CATTACACGGTCGACCTC----------------	18	2	-	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGACCT-----------------	21	2	-	-	-	-	-	-	-	-	-
	-----------------------------GCGTTCGCTTCATTTATGGCGCACA--------------------------------	25	-	1	-	-	-	-	-	-	-	-
	--------------------------------------------ATGGCGCACATTACACGG------------------------	18	-	1	-	-	-	-	-	-	-	-
	-----------------------------GCGTTCGCTTCATTTATG---------------------------------------	18	1	-	-	-	-	-	-	-	-	-
	--------------------------GGCGCGTTCGCTTCATTTA-----------------------------------------	19	-	1	-	-	-	-	-	-	-	-
	---------------------------------------------------ACATTACACGGTCGACCT-----------------	18	1	-	-	-	-	-	-	-	-	-
	-----------------------------------------------------ATTACACGGTCGACCTCT---------------	18	-	1	-	-	-	-	-	-	-	-
	------------------------------------------------CGCACATTACACGGTCGACCTCTT--------------	24	1	-	-	-	-	-	-	-	-	-
rat	TTGGTACTTGGAGAGAGGTGGTCCGTGGCGCGTTCGCTTCATTTATGGCGCACATTACACGGTCGACCTCTTTGCGGTATCTAATC
human	-------------AGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCT---------------
mouse	-------------AGAGGTGGTCCGTGGCGCGTTCGCTTCATTTATGGCGCACATTACACGGTCGACCTCT---------------
	************************ *****************************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000053577 ENSRNOG00000035454 rno-mir-323
rat	..((((((.(.((((((((.(.(((((....((.((((........)))).))....))))).).)))))))).))))))).....	1.000 -37.00
human	((((((((.(((((....((.((((........)))).))....))))))).))))))	0.999 -23.10
mouse	((((((((.(((((....((.((((........)))).))....))))))).))))))	0.999 -23.10

rat	chromosome:6:134391697:134391782:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000053577\|ENSRNOG00000035454 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053577\|ENSRNOG00000035454 ## ENSRNOG00000035454\|miRNA\|rno-mir-323\|rno-mir-323 [Source:miRBase;Acc:MI0000591] ## {MIR: rno-mir-323}
human	chromosome:14:100561802:100561927:1	Same_strand\|Boundary_non-coding\|ENST00000362199\|ENSG00000199069\|miRNA\|hsa-mir-323 [Source:miRBase;Acc:MI0000807] ## {MIR: hsa-mir-323}
mouse	chromosome:12:110950698:110950823:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083683\|ENSMUSG00000065617\|miRNA\|mmu-mir-323 [Source:miRBase;Acc:MI0000592] ## {MIR: mmu-mir-323}

rno-mir-154

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-154 5arm	397	493	9	4	14	21	4	2	9	19
rno-mir-154 3arm	346	264	5	8	3	3	3	1	7	23
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-154 5arm	0.013	0.022	0.000	0.000	0.001	0.002	0.000	0.000	0.001	0.001
rno-mir-154 3arm	0.012	0.012	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.002

sblock10515 (miRBase rno-mir-154) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-154	0.001	no	no	0.35/0.55	18/24/0.55	0.0 0.0 0.0	1.7 0.0 0.7	811 1 411	0 0 0	10 1 10	0 0 0	14 26 12	0 -8 4	5arm 5arm_loop 3arm	1 1 1	nd nd nd	0.24 0.68 0.23	4 9 4	1635	10	3	2

Clusters
Located in cluster 75: rno-mir-154, hsa-mir-496

		reads	miRBase family seed
seed	---------------AGGUUAU-------------------------------------------------------------------	963	miR-154
seed	---------------------------------------------------AUCAUAC-------------------------------	660	novel
seed	----------------GGUUAUC------------------------------------------------------------------	8	novel
seed	-------------------------------------------------------UACACGG---------------------------	1	novel
seed	---------------------------UUGCCUU-------------------------------------------------------	1	novel
seed	----------------------------------------------------UCAUACA------------------------------	1	novel
seed	----------------------------------------------GACGAAU------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	--------------------------------------------------AATCATACACGGTTGACCTATT-----------------	22	154	134	-	6	2	3	2	1	2	9
	--------------TAGGTTATCCGTGTTGCC---------------------------------------------------------	18	125	137	2	1	1	8	-	-	1	5
	--------------TAGGTTATCCGTGTTGCCTTC------------------------------------------------------	21	109	141	3	2	4	2	3	1	3	2
	--------------TAGGTTATCCGTGTTGCCT--------------------------------------------------------	19	114	126	1	1	3	4	1	-	4	9
	--------------------------------------------------AATCATACACGGTTGACCTA-------------------	20	63	42	1	-	-	-	-	-	3	5
	--------------------------------------------------AATCATACACGGTTGACCT--------------------	19	60	39	2	-	1	-	1	-	-	4
	--------------TAGGTTATCCGTGTTGCCTTCGC----------------------------------------------------	23	23	59	1	-	5	5	-	-	1	3
	--------------------------------------------------AATCATACACGGTTGACC---------------------	18	41	33	-	-	-	-	-	-	-	4
	--------------------------------------------------AATCATACACGGTTGACCTAT------------------	21	24	13	2	2	-	-	-	-	2	1
	--------------TAGGTTATCCGTGTTGCCTT-------------------------------------------------------	20	18	13	-	-	-	-	-	1	-	-
rno-miR-154	--------------TAGGTTATCCGTGTTGCCTTCG-----------------------------------------------------	22	5	12	2	-	-	1	-	-	-	-
	--------------------------------------------------AATCATACACGGTTGACCTATTT----------------	23	4	-	-	-	-	-	-	-	-	-
	---------------AGGTTATCCGTGTTGCCTTC------------------------------------------------------	20	1	2	-	-	-	1	-	-	-	-
	---------------AGGTTATCCGTGTTGCCTTCGC----------------------------------------------------	22	2	-	-	-	1	-	-	-	-	-
	--------------TAGGTTATCCGTGTTGCCTTCGCT---------------------------------------------------	24	-	1	-	-	-	-	-	-	-	-
	---------------------------------------------------ATCATACACGGTTGACCTATT-----------------	21	-	1	-	-	-	-	-	-	-	-
	---------------------------------------------TGACGAATCATACACGGTTGAC----------------------	22	-	1	-	-	-	-	-	-	-	-
	------------------------------------------------------ATACACGGTTGACCTATT-----------------	18	-	1	-	-	-	-	-	-	-	-
	---------------AGGTTATCCGTGTTGCCT--------------------------------------------------------	18	-	1	-	-	-	-	-	-	-	-
	--------------------------GTTGCCTTCGCTTTATTCG--------------------------------------------	19	-	1	-	-	-	-	-	-	-	-
rat	GCGGTGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAA-----
human	-TGGTACTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTTGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAAATCCC
mouse	--GGTGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGTACC-------
	* ********************************* ************************************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> .....	ENSRNOT00000053723 ENSRNOG00000035600 rno-mir-154
rat	..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).))))))..	1.000 -36.90
human	(((((((.((((((((((((.((((((((...((((.......)))).....)).)))))).)))))))))))).)))))))......	0.983 -37.00
mouse	((((((.((((((((((((.((((((....((((.((.......))))))....)))))).)))))))))))).))))))	0.928 -34.30

rat	chromosome:6:134419671:134419754:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000053723\|ENSRNOG00000035600 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053723\|ENSRNOG00000035600 ## ENSRNOG00000035600\|miRNA\|rno-mir-154\|rno-mir-154 [Source:miRBase;Acc:MI0000923] ## {MIR: rno-mir-154}
human	chromosome:14:100595846:100595933:1	Same_strand\|Boundary_non-coding\|ENST00000385243\|ENSG00000207978\|miRNA\|hsa-mir-154 [Source:miRBase;Acc:MI0000480] ## {MIR: hsa-mir-154}
mouse	chromosome:12:110976636:110976715:1	Same_strand\|Exonic_non-coding\|ENSMUST00000083514\|ENSMUSG00000065448\|miRNA\|mmu-mir-154 [Source:miRBase;Acc:MI0000176] ## {MIR: mmu-mir-154}

miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK (2 loci)

rno-mir-351

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-351 5arm	1043	791	445	365	833	492.500	1287	1292	2235	1133
rno-mir-351 3arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-351 5arm	0.035	0.035	0.024	0.022	0.041	0.037	0.100	0.068	0.147	0.075
rno-mir-351 3arm	0	0	0	0	0	0	0	0	0	0.000

sblock12723 (miRBase rno-mir-351) [miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-351	0.004	no	no	0.35/0.72	18/25/0.68	0.0 0.0 0.0	0.2 0.2 0.0	4706 10 1	0 0 0	10 9 1	0 0 0	15 55 0	8 -34 -15	5arm loop 3arm_loop	1 1 1	nd nd nd	0.25 0.14 0.37	2 1 4	9948	10	na	na

Clusters
Located in cluster 88: rno-mir-351, rno-mir-503, rno-mir-322

Families
Member of family miR-125a/125b/351 (seed CCCUGAG): rno-mir-125b, rno-mir-351, block1892622_cand

		reads	miRBase family seed
seed	----------------CCCUGAG---------------------------------------------------------------------------	9845	miR-125a/125b/351
seed	-----------------CCUGAGG--------------------------------------------------------------------------	66	novel
seed	----------------------------------------------------------GUCAAGA---------------------------------	23	novel
seed	-----------------------------------------------------------UCAAGAG--------------------------------	7	novel
seed	---------------------AGGAGCC----------------------------------------------------------------------	3	novel
seed	---------------UCCCUGA----------------------------------------------------------------------------	2	novel
seed	--------------------GAGGAGC-----------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------------------------GGAGAAG------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------------TCCCTGAGGAGCCCTTTGAG---------------------------------------------------------------	20	438	324	183	155	327	200	514	518	959	463
	---------------TCCCTGAGGAGCCCTTTGA----------------------------------------------------------------	19	268	164	107	96	185	125	319	334	510	243
	---------------TCCCTGAGGAGCCCTTTGAGCC-------------------------------------------------------------	22	93	81	45	37	97	52	144	127	222	131
	---------------TCCCTGAGGAGCCCTTTGAGC--------------------------------------------------------------	21	101	89	44	40	71	33	140	136	158	71
	---------------TCCCTGAGGAGCCCTTTG-----------------------------------------------------------------	18	83	77	33	20	84	29	106	128	174	90
	---------------TCCCTGAGGAGCCCTTTGAGCCT------------------------------------------------------------	23	51	50	30	15	61	52	55	43	196	124
	----------------CCCTGAGGAGCCCTTTGAG---------------------------------------------------------------	19	1	3	1	-	3	-	4	3	8	6
	---------------------------------------------------------GGTCAAGAGGCGCCTGGGAAC--------------------	21	1	5	1	-	1	3	-	1	-	1
	----------------CCCTGAGGAGCCCTTTGAGCC-------------------------------------------------------------	21	4	1	-	-	-	-	2	1	1	1
	----------------CCCTGAGGAGCCCTTTGA----------------------------------------------------------------	18	1	-	1	-	1	-	1	-	4	1
	----------------CCCTGAGGAGCCCTTTGAGC--------------------------------------------------------------	20	1	-	-	-	4	-	1	-	1	1
	----------------CCCTGAGGAGCCCTTTGAGCCTG-----------------------------------------------------------	23	1	-	1	-	-	-	-	2	1	-
	----------------CCCTGAGGAGCCCTTTGAGCCT------------------------------------------------------------	22	1	1	-	-	-	1	-	-	1	1
	----------------------------------------------------------GTCAAGAGGCGCCTGGGAA---------------------	19	1	-	-	-	-	1	1	-	-	1
	---------------------------------------------------------GGTCAAGAGGCGCCTGGGA----------------------	19	1	1	-	-	-	-	-	-	-	1
	---------------------------------------------------------GGTCAAGAGGCGCCTGGGAACT-------------------	22	2	-	-	-	-	-	-	-	-	1
	--------------------GAGGAGCCCTTTGAGCCTG-----------------------------------------------------------	19	-	1	-	1	-	-	-	-	-	-
	----------------------------------------------------------GTCAAGAGGCGCCTGGGA----------------------	18	-	1	-	-	-	-	-	-	-	1
	--------------TTCCCTGAGGAGCCCTTTGAG---------------------------------------------------------------	21	-	-	-	1	-	-	-	-	-	1
	---------------------------------------------------------GGTCAAGAGGCGCCTGGGAA---------------------	20	1	1	-	-	-	-	-	-	-	-
	---------------------------------------------------------GGTCAAGAGGCGCCTGGG-----------------------	18	-	1	-	-	-	-	1	-	-	-
	--------------------GAGGAGCCCTTTGAGCCT------------------------------------------------------------	18	-	-	-	-	-	1	-	-	-	-
	------------------------------------------------------------------------------TGGAGAAGAGTATTAACTTC	20	-	-	-	-	-	-	-	-	-	1
	-------------------TGAGGAGCCCTTTGAGCCTGA----------------------------------------------------------	21	-	-	-	-	-	-	1	-	-	-
	----------------------------------------------------------GTCAAGAGGCGCCTGGGAACT-------------------	21	-	-	-	1	-	-	-	-	-	-
rno-miR-351	---------------TCCCTGAGGAGCCCTTTGAGCCTGA----------------------------------------------------------	25	-	-	-	-	-	-	-	-	-	-
rat	CATGGCACCTCCATTTCCCTGAGGAGCCCTTTGAGCCTGAGGTG--AAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGTATTAACTTC
mouse	--------CTCCGTTTCCCTGAGGAGCCCTTTGAGCCTGGAGTGAAAAAAAAAAACAGGTCAAGAGGCGCCTGGGAACTGGAGAAGAGT---------
	** ********************** * *******************************************
	------------------------------------------------- ---------------------------------------------------------	ENSRNOT00000046779 ENSRNOG00000037484
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>....................	ENSRNOT00000053675 ENSRNOG00000035552 rno-mir-351
rat	........(((((.(((((..(((.(((.(((((.((((...(. .....)...))))))))).))).)))))))).)))))..((((....)))).	1.000 -34.00
mouse	(((((.(((((..(((.(((.(((((.((((................))))))))).))).)))))))).)))))......	1.000 -33.59

rat	chromosome:X:139999115:139999210:-1	Opposite_strand\|Intronic_coding\|ENSRNOT00000046779\|ENSRNOG00000037484 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000053675\|ENSRNOG00000035552 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000053675\|ENSRNOG00000035552 ## Opposite_strand\|Boundary_non-coding\|ENSRNOT00000056740\|ENSRNOG00000037484 ## ENSRNOG00000037484\|protein_coding\|\| ## ENSRNOG00000035552\|miRNA\|rno-mir-351\|rno-mir-351 [Source:miRBase;Acc:MI0000642] ## {MIR: rno-mir-351}
mouse	chromosome:X:50406442:50406522:-1	Same_strand\|Exonic_non-coding\|ENSMUST00000083569\|ENSMUSG00000065503\|miRNA\|mmu-mir-351 [Source:miRBase;Acc:MI0000643] ## {Repeats: dust 0 class=dust} ## {MIR: mmu-mir-351}

rno-mir-142

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-142 5arm	148	166	338	479	3347.500	2973.500	215	277	292	403
rno-mir-142 3arm	0	0	0	0	1	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-142 5arm	0.005	0.007	0.018	0.028	0.163	0.225	0.017	0.015	0.019	0.027
rno-mir-142 3arm	0	0	0	0	0.000	0	0	0	0	0

sblock2768 (miRBase rno-mir-142) [miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-142	0.002	no	no	0.28/0.64	18/26/0.49	0.5 0.0 1.3 0.2 2.7	0.2 0.4 3.3 0.9 6.7	13 4945 6 8400 6	0 0 0 0 0	3 10 3 10 1	0 0 0 0 0	3 20 42 58 0	26 9 -17 -31 -60	5arm 5arm 5arm_loop loop 3arm_loop	1 1 1 1 2	nd nd nd nd nd	0.22 0.05 0.45 0.05 0.32	2 1 4 1 4	28477	10	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------GUAGUGU---------------------------------------------------	9666	miR-142
seed	---------------------CCAUAAA-----------------------------------------------------------------------------------------	8397	novel
seed	------------------------------------------------------------UAGUGUU--------------------------------------------------	6628	novel
seed	--------------------------------------------------------------GUGUUUC------------------------------------------------	3187	novel
seed	-------------------------------------------------------------AGUGUUU-------------------------------------------------	316	novel
seed	-----------------------AUAAAGU---------------------------------------------------------------------------------------	163	miR-142
seed	--------------------CCCAUAA------------------------------------------------------------------------------------------	54	novel
seed	---------------------------------------------------------------UGUUUCC-----------------------------------------------	27	novel
seed	----ACAGACA----------------------------------------------------------------------------------------------------------	6	novel
seed	-----CAGACAG---------------------------------------------------------------------------------------------------------	6	novel
seed	-------------------------------------------AACAGCA-------------------------------------------------------------------	3	miR-21*
seed	------AGACAGU--------------------------------------------------------------------------------------------------------	3	novel
seed	----------------------CAUAAAG----------------------------------------------------------------------------------------	2	novel
seed	----------------------------------------------------------------GUUUCCU----------------------------------------------	2	novel
seed	------------------------------------------------------------------------------------GUGUACU--------------------------	2	novel
seed	----------------------------------------------------------------------------------GAGUGUA----------------------------	2	novel
seed	----------------------------------------------AGCACUG----------------------------------------------------------------	2	novel
seed	--AGACAGA------------------------------------------------------------------------------------------------------------	2	novel
seed	----------------------------------------------------------UGUAGUG----------------------------------------------------	2	novel
seed	-CAGACAG-------------------------------------------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------------GGUGUAG------------------------------------------------------	1	novel
seed	---------------------------------------------CAGCACU-----------------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------------------UGAGUGU-----------------------------	1	novel
seed	---------------------------------------------------------------------------------------------GGGCUUC-----------------	1	novel
seed	---------------------------------------------------------GUGUAGU-----------------------------------------------------	1	novel
seed	----------------------------------------------------GGAGGGU----------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------------------------------------------TGTAGTGTTTCCTACTTTA----------------------------------------	19	23	15	38	69	2283	2331	27	28	49	50
	--------------------CCCATAAAGTAGAAAGCAC------------------------------------------------------------------------------	19	38	63	142	189	1661	1249	85	107	117	194
	--------------------CCCATAAAGTAGAAAGCACT-----------------------------------------------------------------------------	20	66	68	126	193	1059	976	94	102	102	110
	-----------------------------------------------------------GTAGTGTTTCCTACTTTAT---------------------------------------	19	3	5	14	24	970	951	5	12	26	21
	----------------------------------------------------------TGTAGTGTTTCCTACTTTATGG-------------------------------------	22	8	12	21	22	923	942	6	8	2	41
	-----------------------------------------------------------GTAGTGTTTCCTACTTTA----------------------------------------	18	6	9	5	11	653	628	7	13	21	14
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATG--------------------------------------	20	5	4	7	19	601	502	12	11	19	11
	----------------------------------------------------------TGTAGTGTTTCCTACTTTAT---------------------------------------	20	3	3	6	15	454	534	3	11	10	16
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATGG-------------------------------------	21	1	5	9	22	498	490	6	9	2	12
	-------------------------------------------------------------AGTGTTTCCTACTTTATGGATG----------------------------------	22	8	7	14	20	620	351	3	11	5	10
	--------------------CCCATAAAGTAGAAAGCACTAC---------------------------------------------------------------------------	22	29	24	39	41	246	424	21	43	44	68
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATGGA------------------------------------	22	3	4	5	18	401	399	7	6	6	22
	----------------------------------------------------------TGTAGTGTTTCCTACTTTATG--------------------------------------	21	5	3	5	8	443	370	2	3	5	7
	----------------------------------------------------------TGTAGTGTTTCCTACTTT-----------------------------------------	18	3	-	5	10	305	296	4	3	9	8
	-------------------------------------------------------------AGTGTTTCCTACTTTATG--------------------------------------	18	2	5	4	12	309	239	8	7	5	6
	--------------------CCCATAAAGTAGAAAGCA-------------------------------------------------------------------------------	18	11	10	20	39	188	186	12	15	21	17
	-------------------------------------------------------------AGTGTTTCCTACTTTATGGATGA---------------------------------	23	2	2	11	14	300	156	3	9	8	2
	-------------------------------------------------------------AGTGTTTCCTACTTTATGGA------------------------------------	20	2	-	7	14	252	192	2	8	4	7
	-------------------------------------------------------------AGTGTTTCCTACTTTATGGAT-----------------------------------	21	1	2	1	6	133	150	1	3	-	2
	-------------------------------------------------------------AGTGTTTCCTACTTTATGG-------------------------------------	19	1	1	2	6	119	96	3	2	-	2
rno-miR-142-3p	----------------------------------------------------------TGTAGTGTTTCCTACTTTATGGA------------------------------------	23	3	2	3	2	87	93	-	1	6	10
	--------------------CCCATAAAGTAGAAAGCACTA----------------------------------------------------------------------------	21	2	1	2	14	66	48	1	4	5	7
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATGGAT-----------------------------------	23	-	-	-	-	57	48	2	-	1	4
	------------------------------------------------------------TAGTGTTTCCTACTTTATG--------------------------------------	19	1	-	-	3	50	48	-	-	-	1
	------------------------------------------------------------TAGTGTTTCCTACTTTAT---------------------------------------	18	-	1	2	2	36	35	-	-	1	-
	------------------------------------------------------------TAGTGTTTCCTACTTTATGG-------------------------------------	20	-	-	-	6	31	36	-	-	-	-
	----------------------CATAAAGTAGAAAGCACTAC---------------------------------------------------------------------------	20	-	-	3	-	30	30	1	1	-	3
	------------------------------------------------------------TAGTGTTTCCTACTTTATGGA------------------------------------	21	1	-	-	-	24	25	-	-	-	2
	-------------------ACCCATAAAGTAGAAAGCAC------------------------------------------------------------------------------	20	-	-	2	1	15	9	-	2	1	-
	----------------------CATAAAGTAGAAAGCACTA----------------------------------------------------------------------------	19	-	-	-	-	19	9	-	-	1	-
rno-miR-142-5p	----------------------CATAAAGTAGAAAGCACTACT--------------------------------------------------------------------------	21	1	-	-	-	18	8	-	-	-	-
	----------------------CATAAAGTAGAAAGCACT-----------------------------------------------------------------------------	18	1	-	1	-	18	7	-	-	-	-
	-------------------------------------------------------------AGTGTTTCCTACTTTATGGATGAG--------------------------------	24	-	-	-	-	6	8	-	-	1	-
	-------------------ACCCATAAAGTAGAAAGCACTAC---------------------------------------------------------------------------	23	-	-	1	-	9	3	-	1	1	-
	----------------------------------------------------------TGTAGTGTTTCCTACTTTATGGAT-----------------------------------	24	-	-	-	-	5	7	-	-	-	-
	--------------------------------------------------------------GTGTTTCCTACTTTATGGATG----------------------------------	21	-	-	-	1	3	6	-	-	-	-
	------------------------------------------------------------TAGTGTTTCCTACTTTATGGAT-----------------------------------	22	-	-	-	-	3	5	-	-	-	-
	--------------------CCCATAAAGTAGAAAGCACTACT--------------------------------------------------------------------------	23	-	-	1	2	3	2	-	-	-	-
	--------------------------------------------------------------GTGTTTCCTACTTTATGGAT-----------------------------------	20	-	-	-	-	5	2	-	-	-	-
	----------------------CATAAAGTAGAAAGCACTACTA-------------------------------------------------------------------------	22	-	-	-	-	5	1	-	1	-	-
	-------------------ACCCATAAAGTAGAAAGCACT-----------------------------------------------------------------------------	21	-	-	1	-	1	2	1	1	-	-
	--------------------------------------------------------------GTGTTTCCTACTTTATGG-------------------------------------	18	-	-	-	-	2	4	-	-	-	-
	----ACAGACAGTGCAGTCACCC----------------------------------------------------------------------------------------------	19	-	-	-	-	-	6	-	-	-	-
	--------------------------------------------------------------GTGTTTCCTACTTTATGGATGA---------------------------------	22	-	-	-	-	3	1	-	-	-	-
	-----CAGACAGTGCAGTCACCC----------------------------------------------------------------------------------------------	18	-	-	-	-	-	3	-	-	-	-
	---GACAGACAGTGCAGTCACCC----------------------------------------------------------------------------------------------	20	-	-	-	-	2	-	-	-	-	1
	---GACAGACAGTGCAGTCACC-----------------------------------------------------------------------------------------------	19	-	-	-	-	1	2	-	-	-	-
	----------------------CATAAAGTAGAAAGCACTACTAA------------------------------------------------------------------------	23	-	-	-	-	-	2	-	-	-	1
	---------------------------------------------------------GTGTAGTGTTTCCTACTTT-----------------------------------------	19	-	-	-	-	1	1	-	-	-	-
	-------------------ACCCATAAAGTAGAAAGCA-------------------------------------------------------------------------------	19	-	-	-	-	2	-	-	-	-	-
	---------------------------------------------------------------TGTTTCCTACTTTATGGATGA---------------------------------	21	-	-	-	-	1	1	-	-	-	-
	---------------------------------------------CAGCACTGGAGGGTGTAGTGT---------------------------------------------------	21	-	-	-	-	-	2	-	-	-	-
	------------------------------------------TAACAGCACTGGAGGGTG---------------------------------------------------------	18	-	-	-	-	-	2	-	-	-	-
	---------------------------------------------------------------------------------TGAGTGTACTGTGGGCTTC-----------------	19	-	-	-	-	2	-	-	-	-	-
	-----------------------------------------------------------------------------------AGTGTACTGTGGGCTTCGGAGATCAC--------	26	-	-	-	-	2	-	-	-	-	-
	------------------------------------------------------------TAGTGTTTCCTACTTTATGGATGA---------------------------------	24	-	-	2	-	-	-	-	-	-	-
	ACAGACAGACAGTGCAGT---------------------------------------------------------------------------------------------------	18	-	-	-	-	1	-	-	-	-	-
	-CAGACAGACAGTGCAGTCACCCA---------------------------------------------------------------------------------------------	23	-	-	-	-	-	1	-	-	-	-
	--------------------------------------------ACAGCACTGGAGGGTGTAGTGT---------------------------------------------------	22	-	-	-	-	1	-	-	-	-	-
	-------------------ACCCATAAAGTAGAAAGC--------------------------------------------------------------------------------	18	-	-	-	-	-	1	-	-	-	-
	------------------------------------------TAACAGCACTGGAGGGTGTA-------------------------------------------------------	20	-	-	-	-	-	-	-	-	-	1
	-CAGACAGACAGTGCAGTCAC------------------------------------------------------------------------------------------------	20	-	-	-	-	1	-	-	-	-	-
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATGGATGA---------------------------------	25	-	-	-	-	-	1	-	-	-	-
	---------------------------------------------------TGGAGGGTGTAGTGTTTCCTAC--------------------------------------------	22	-	-	-	-	1	-	-	-	-	-
	-------------------------------------------------------GGGTGTAGTGTTTCCTACTT------------------------------------------	20	-	-	-	-	1	-	-	-	-	-
	------------------------------------------------------------TAGTGTTTCCTACTTTATGGATG----------------------------------	23	-	-	-	-	-	1	-	-	-	-
	---------------------CCATAAAGTAGAAAGCACT-----------------------------------------------------------------------------	19	-	-	-	-	1	-	-	-	-	-
	----------------------CATAAAGTAGAAAGCACTACTAACA----------------------------------------------------------------------	25	-	-	-	-	-	-	-	-	-	1
	--------------------------------------------------------------------------------ATGAGTGTACTGTGGGCTTCGGAGA------------	25	-	-	-	-	1	-	-	-	-	-
	--------------------------------------------------------------------------------------------TGGGCTTCGGAGATCACGCCACACC	25	-	-	-	-	1	-	-	-	-	-
	----------------------CATAAAGTAGAAAGCACTACTAAC-----------------------------------------------------------------------	24	-	-	-	-	1	-	-	-	-	-
	-----------------------------------------------------------GTAGTGTTTCCTACTTTATGGATG----------------------------------	24	-	-	-	-	-	-	-	-	1	-
	---------------------CCATAAAGTAGAAAGCACTAC---------------------------------------------------------------------------	21	-	-	-	-	-	1	-	-	-	-
	--------------------------------------------------------GGTGTAGTGTTTCCTACT-------------------------------------------	18	-	-	-	-	1	-	-	-	-	-
rat	ACAGACAGACAGTGCAGTCACCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGTGGGCTTCGGAGATCACGCCACACC
human	--------------------CCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGA------------------------------------
mouse	--------------------CCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGA------------------------------------
	*************************************************************
	............>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................	ENSRNOT00000053756 ENSRNOG00000035633 rno-mir-142
	.................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000046668 ENSRNOG00000007957 Bzrap1
rat	........((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).)))))))).(((............))).....	1.000 -47.80
human	.(((((((((((.(((((((((...((....))......))))))))).))))))))))).	1.000 -27.10
mouse	.(((((((((((.(((((((((...((....))......))))))))).))))))))))).	1.000 -27.10

rat	chromosome:10:76049273:76049389:1	Same_strand\|Boundary_non-coding\|ENSRNOT00000010755\|ENSRNOG00000007957 ## Same_strand\|Exonic_non-coding\|ENSRNOT00000046668\|ENSRNOG00000007957 ## ENSRNOG00000007957\|protein_coding\|Bzrap1\|Peripheral-type benzodiazepine receptor-associated protein 1 (PRAX-1) (RIM-binding protein 1) (RIM-BP1). [Source:UniProtKB/Swiss-Prot;Acc:Q9JIR0] ## ENSRNOG00000035633\|miRNA\|rno-mir-142\|rno-mir-142 [Source:miRBase;Acc:MI0000915] ## {MIR: rno-mir-142}
human	chromosome:17:53763549:53763705:-1	Same_strand\|Boundary_non-coding\|ENST00000384835\|ENSG00000207567\|miRNA\|hsa-mir-142 [Source:miRBase;Acc:MI0000458] ## {MIR: hsa-mir-142}
mouse	chromosome:11:87570327:87570483:1	Same_strand\|Boundary_non-coding\|ENSMUST00000083486\|ENSMUSG00000065420\|miRNA\|mmu-mir-142 [Source:miRBase;Acc:MI0000167] ## {MIR: mmu-mir-142}

Back to summary page

other miRBase miRNAs:

Page 1

Page 8

Page 11

miR-Intess™

rno-mir-505

sblock12729 (miRBase rno-mir-505) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

rno-mir-24

sblock4979 (miRBase rno-mir-24-1) [miRNAknown_cloningHIGH_multiarm_DicerNOK_shortStem_randfoldOK]

rno-mir-187

sblock5445 (miRBase rno-mir-187) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK]

rno-mir-147

sblock8132 (miRBase rno-mir-147) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK]

rno-mir-376a

sblock10504 (miRBase rno-mir-376a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK]

rno-mir-466c

sblock5203 (miRBase rno-mir-466c) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_loopOverlap_randfoldOK]

rno-mir-323

sblock10492 (miRBase rno-mir-323) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]

rno-mir-154

sblock10515 (miRBase rno-mir-154) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK_bulgeHIGH]

rno-mir-351

sblock12723 (miRBase rno-mir-351) [miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK]

rno-mir-142

sblock2768 (miRBase rno-mir-142) [miRNAknown_lenNOK_cloningHIGH_multiarm_randfoldOK]