========== block2161989 (miRBase rno-mir-349) [miRNAknown_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH] ========== #randfold block2161989: 0.041 #forester #identity: 0.00 block2161989 CAGCCCTGCTGTCTTAACCTCT #rat_gr294089_libMirbase_rno-miR-349 22 1 block2161989 gaagactctagcatgtaaggttgggggagggggctgtgtctagcaagtcttcttcccccaCAGCCCTGCTGTCTTAACCTCTaggtgttccggctcc ************************************************************************************************* block2161989 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> #ENSRNOT00000010467 ENSRNOG00000007133 NP_001101576.1 block2161989 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054623 ENSRNOG00000036516 rno-mir-349 block2161989 (((.((.((((....((((...(((((((((((((((.....)).))))))))))))).(((((...)))))))))....)))))).)))....... 1.000 -36.20 # #block2161989 chromosome:7:127468167:127468263:-1 Same_strand|Boundary_non-coding|ENSRNOT00000030866|ENSRNOG00000007133 ## Same_strand|Intronic_coding|ENSRNOT00000010467|ENSRNOG00000007133 ## Same_strand|Exonic_non-coding|ENSRNOT00000054623|ENSRNOG00000036516 ## ENSRNOG00000036516|miRNA|rno-mir-349|rno-mir-349 [Source:miRBase;Acc:MI0000636] ## ENSRNOG00000007133|protein_coding|NP_001101576.1|plexin B2 [Source:RefSeq_peptide;Acc:NP_001101576] ## {MIR: rno-mir-349} ========== block17610 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block17610: 0.001 #forester #identity: 0.00 block17610 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block17610 gtgtgtgcATGTATGTGTGCATGTATGCATGtatgtacacacgagtgtgcatgtgtgcacacacgtgagtatgtgcatgtgtgtacatgtgtacaacttataacaacac ************************************************************************************************************* block17610 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000036822 ENSRNOG00000026596 RGD1566120_predicted block17610 ((((((....((.((((..(((((((((((((((((((.((((.(((((((....))))))).)))).))))))))))))..)))))))..)))))).....))).))) 0.510 -52.00 # #block17610 chromosome:10:39801526:39801634:-1 Opposite_strand|Intronic_coding|ENSRNOT00000036822|ENSRNOG00000026596 ## ENSRNOG00000026596|protein_coding|RGD1566120_predicted| ## {Repeats: trf 57 62 0 class=trf,trf 1 20 0 class=trf,trf 6 29 0 class=trf,RMER12 817 840 1 class=LTR/ERVK,trf 24 47 0 class=trf,dust 39801604 39801627 0 class=dust,(CATA)n 3 58 -1 class=Simple_repeat} ========== block48785 (miRBase rno-mir-297) [miRNAknown_rep_Multihit_shortStem_randfoldOK] ========== #randfold block48785: 0.001 #forester #identity: 0.00 block48785 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block48785 atgcATGTATGTGTGCATGTATGCATGcatgcatgtatgtatgtatggtgcacttgtgtgtgtgtg ****************************************************************** block48785 .....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>..... #ENSRNOT00000054374 ENSRNOG00000036251 rno-mir-297 block48785 (((((..((((.((((((.((((((((((((....)))))))))))))))))).))))..))))). 1.000 -29.30 # #block48785 chromosome:10:102801285:102801350:-1 Same_strand|Exonic_non-coding|ENSRNOT00000054374|ENSRNOG00000036251 ## ENSRNOG00000036251|miRNA|rno-mir-297|rno-mir-297 [Source:miRBase;Acc:MI0000968] ## {Repeats: (CATA)n 4 128 -1 class=Simple_repeat,RMER12 815 838 1 class=LTR/ERVK,trf 21 44 0 class=trf,dust 102801324 102801347 0 class=dust} ## {MIR: rno-mir-297} ========== block681390 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block681390: 0.001 #forester #identity: 0.00 block681390 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block681390 tgcacgtgtatgtatgtgtgcactgtgtatgtgtgcacgtgtgtatgtgcacatgtatgtgtgcatgtgtgtgcacATGTATGTGTGCATGTATGCATGtgcatatgtatgtttgtgcac ************************************************************************************************************************ block681390 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002513 ENSRNOG00000022021 NP_001099595.1 block681390 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000038823 ENSRNOG00000022021 NP_001099595.1 block681390 ((((((...((((((((((((((.(((((((..((((((..((((((((((((..((((....))))..))))))))))))..))))))..))))))))))))))))))))).)))))). 0.620 -70.00 # #block681390 chromosome:17:92840435:92840554:1 Same_strand|Intronic_coding|ENSRNOT00000002513|ENSRNOG00000022021 ## ENSRNOG00000022021|protein_coding|NP_001099595.1|sperm associated antigen 6 [Source:RefSeq_peptide;Acc:NP_001099595] ## {Repeats: dust 92840477 92840500 0 class=dust,(TATG)n 4 114 1 class=Simple_repeat,trf 32 55 0 class=trf,trf 1 20 0 class=trf,RLTR21 823 846 1 class=LTR/ERVK,trf 1 17 0 class=trf} ========== block1071645 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block1071645: 0.001 #forester #identity: 0.00 block1071645 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block1071645 atatgtatATGTATGTGTGCATGTATGCATGcacatgtgtgtacatatttgtgtatgtgtgtatatgtgtatatgtatatgtatgtgtgtatgtatgcgtgcacatgtgtgtacatat ********************************************************************************************************************** block1071645 ((((((((((..((((((((((((((((((((((((((((((((((((.(((((((....)))))))...))))))))))..)))))))))))))))))))))))))))))))))))) 0.980 -57.20 # #block1071645 chromosome:20:21055199:21055316:-1 intergenic ## {Repeats: RMER12 914 937 1 class=LTR/ERVK,dust 21055286 21055309 0 class=dust,trf 312 335 0 class=trf,trf 264 287 0 class=trf,(CATATA)n 1 300 -1 class=Simple_repeat} ========== block1214608 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_loopOverlap_randfoldOK] ========== #randfold block1214608: 0.001 #forester #identity: 0.00 block1214608 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block1214608 gggtatcaagcatgtatgtgtgtgcgcgcatgtatgcatgtgtgtatgggtgtATGTATGTGTGCATGTATGCATGatgaatgtacatgcacatgcatgcatctaccta ************************************************************************************************************* block1214608 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000020267 ENSRNOG00000015029 Dbt block1214608 (((((....(((((((((((((((..((((((((((((((((..((((........))))..)))))))))))))).....))..)))))))))))))))...))))). 0.810 -50.70 # #block1214608 chromosome:2:212769353:212769461:-1 Opposite_strand|Intronic_coding|ENSRNOT00000020267|ENSRNOG00000015029 ## ENSRNOG00000015029|protein_coding|Dbt|dihydrolipoamide branched chain transacylase E2 [Source:RefSeq_peptide;Acc:NP_445764] ## {Repeats: RMER12 811 834 1 class=LTR/ERVK,(CATA)n 3 75 -1 class=Simple_repeat,dust 212769386 212769409 0 class=dust} ========== block1421463 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block1421463: 0.001 #forester #identity: 0.00 block1421463 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block1421463 tgtgcttgtgtgtgcacatatgtgcatgtgtgtacatgtttgtgcacgtgtgtacacctgtgtgtATGTATGTGTGCATGTATGCATGtgagtgcatgtgtgtgtgtatgtgtgttca ********************************************************************************************************************** block1421463 ((.((.((..((..(((((((((((((((((((((((((....(((((((..(((((....)))))..)))))))))))))))))))....)))))))))))))..))..)).)).)) 0.930 -53.40 # #block1421463 chromosome:3:154036000:154036117:-1 intergenic ## {Repeats: (CA)n 2 117 -1 class=Simple_repeat,trf 28 51 0 class=trf,RLTR21 817 840 1 class=LTR/ERVK,dust 154036030 154036053 0 class=dust,trf 17 40 0 class=trf} ========== block1802172 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_shortStem_randfoldOK] ========== #randfold block1802172: 0.001 #forester #identity: 0.00 block1802172 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block1802172 catgtatatatgtacacatgtatgtgcgtgtgtacttgtgtatgtgcatgtgcattcgtatatgtgcatgtatgtgtgtgtgcgtgtatgtatgtATGTATGTGTGCATGTATGCATG ********************************************************************************************************************** block1802172 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000055617 ENSRNOG00000013498 Pex14 block1802172 ((((((((((((((((((..((((((((((..(((.((..((((((((((..(((......)))..)))))))....)))..)).)))..)))))))))))))))))))))))))))) 0.850 -57.10 # #block1802172 chromosome:5:166097074:166097191:-1 Same_strand|Intronic_coding|ENSRNOT00000055617|ENSRNOG00000013498 ## Same_strand|Boundary_non-coding|ENSRNOT00000018167|ENSRNOG00000013498 ## ENSRNOG00000013498|protein_coding|Pex14|peroxisomal biogenesis factor 14 [Source:RefSeq_peptide;Acc:NP_742060] ## {Repeats: B3 178 201 -1 class=SINE/B2,B3 5 203 -1 class=SINE,trf 14 37 0 class=trf,trf 8 31 0 class=trf,dust 166097074 166097097 0 class=dust,trf 1 17 0 class=trf} ========== block2536762 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_loopOverlap_randfoldOK_bulgeHIGH] ========== #randfold block2536762: 0.001 #forester #identity: 0.00 block2536762 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block2536762 gtatatatgtatgtgtatacgcgtatatctgtgtgtgaatATGTATGTGTGCATGTATGCATGtgtatgtgtgtatatgcgtttgtatgtgcgtgtatgtgtattgtgtatatatgtatg ************************************************************************************************************************ block2536762 (((((((((((..((.((((((((((((..(((..((...(((((((((..((((((((....))))))))..)))))))))...))..)))))))))))))))))..))))))))))). 0.990 -45.80 # #block2536762 chromosome:9:88522108:88522227:-1 intergenic ## {Repeats: (CATA)n 1 180 -1 class=Simple_repeat,dust 88522165 88522188 0 class=dust,RLTR21 1215 1238 1 class=LTR/ERVK,(CA)n 1 92 -1 class=Simple_repeat} ========== block2620432 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block2620432: 0.001 #forester #identity: 0.00 block2620432 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block2620432 tatgtatgtgtgtatatatgcacatatatgtacatctgtgtatctatgcatatatatgcatatgtgtatataaacgtATGTATGTGTGCATGTATGCATGtatgcatgt ************************************************************************************************************* block2620432 ((((((((..(((((((((((((((((((((((...(((((((.(((((((....)))))))...)))))))...)))))))))))))))))))))))..)))))))). 0.730 -52.90 # #block2620432 chromosome:9:76837097:76837205:1 intergenic ## {Repeats: (TATG)n 4 171 1 class=Simple_repeat,dust 76837062 76837078 0 class=dust,trf 1 8 0 class=trf,trf 10 33 0 class=trf,RMER12 845 868 1 class=LTR/ERVK} ========== block200189 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_Multihit_randfoldOK] ========== #randfold block200189: 0.001 #forester #identity: 0.00 block200189 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block200189 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block200189 tatgtATGTATGTGTGCATGTATGCATGcatctatgtatgtatgtgcatgcatgtgtgtacatgtatgtgtgcatgcatgtatgtggaagtATGTATGTGTGCATGTATGCATGcata ********************************************************************************************************************** block200189 ((((((((((((..((((..(((((((((.(((((((((((((((((((((((((....))))))))))..)))))))..)))))))).)))))))))..))))..)))))))))))) 0.970 -63.60 # #block200189 chromosome:12:38433455:38433572:-1 intergenic ## {Repeats: dust 38433459 38433482 0 class=dust,(CATA)n 52 75 -1 class=Simple_repeat,trf 1 24 0 class=trf,trf 56 79 0 class=trf,(CATA)n 4 171 -1 class=Simple_repeat} ========== block200190 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_Multihit_randfoldOK] ========== #randfold block200190: 0.001 #forester #identity: 0.00 block200190 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block200190 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block200190 tatgtATGTATGTGTGCATGTATGCATGcatctatgtatgtatgtgcatgcatgtgtgtacatgtatgtgtgcatgcatgtatgtggaagtATGTATGTGTGCATGTATGCATGcata ********************************************************************************************************************** block200190 ((((((((((((..((((..(((((((((.(((((((((((((((((((((((((....))))))))))..)))))))..)))))))).)))))))))..))))..)))))))))))) 0.970 -63.60 # #block200190 chromosome:12:38433455:38433572:-1 intergenic ## {Repeats: trf 142 165 0 class=trf,dust 38433545 38433568 0 class=dust,trf 87 110 0 class=trf,(CATA)n 138 161 -1 class=Simple_repeat,(CATA)n 4 171 -1 class=Simple_repeat}