miR-Intess: classification

noncloned miRBase miRNAs

miRBaseNonMapped_rep_Multihit_shortStem_randfoldOK (1 loci)

miRNAknown_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH (1 loci)

rno-mir-349

block2161989 (miRBase rno-mir-349) [miRNAknown_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-349	0.041	no	no	0.55/0.55	22/22/1.00	nd	nd	0	0	0	0	15	-7	3arm_loop	1	2	0.32	4	0	0	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AGCCCUG-----------------------------	0	miR-349
		len	cloning frequencies

rno-miR-349	------------------------------------------------------------CAGCCCTGCTGTCTTAACCTCT---------------	22
rat	gaagactctagcatgtaaggttgggggagggggctgtgtctagcaagtcttcttcccccaCAGCCCTGCTGTCTTAACCTCTaggtgttccggctcc
	*************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>	ENSRNOT00000010467 ENSRNOG00000007133 NP_001101576.1
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000054623 ENSRNOG00000036516 rno-mir-349
rat	(((.((.((((....((((...(((((((((((((((.....)).))))))))))))).(((((...)))))))))....)))))).))).......	1.000 -36.20

rat

chromosome:7:127468167:127468263:-1

Same_strand|Boundary_non-coding|ENSRNOT00000030866|ENSRNOG00000007133 ## Same_strand|Intronic_coding|ENSRNOT00000010467|ENSRNOG00000007133 ## Same_strand|Exonic_non-coding|ENSRNOT00000054623|ENSRNOG00000036516 ## ENSRNOG00000036516|miRNA|rno-mir-349|rno-mir-349 [Source:miRBase;Acc:MI0000636] ## ENSRNOG00000007133|protein_coding|NP_001101576.1|plexin B2 [Source:RefSeq_peptide;Acc:NP_001101576] ## {MIR: rno-mir-349}

miRNAknown_rep_Multihit_shortStem_randfoldOK (1 loci)

block48785 (miRBase rno-mir-297) [miRNAknown_rep_Multihit_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase rno-mir-297	0.001	no	LTR/ERVK	0.39/0.39	23/23/1.00	nd	nd	0	0	0	0	4	4	5arm	13	nd	0.17	2	0	0	na	na

		reads	miRBase family seed
seed	-----UGUAUGU------------------------------------------------------	0	miR-297
		len	cloning frequencies

rno-miR-297	----ATGTATGTGTGCATGTATGCATG---------------------------------------	23
rat	atgcATGTATGTGTGCATGTATGCATGcatgcatgtatgtatgtatggtgcacttgtgtgtgtgtg
	******************************************************************
	.....>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.....	ENSRNOT00000054374 ENSRNOG00000036251 rno-mir-297
rat	(((((..((((.((((((.((((((((((((....)))))))))))))))))).))))..))))).	1.000 -29.30

rat

chromosome:10:102801285:102801350:-1

Same_strand|Exonic_non-coding|ENSRNOT00000054374|ENSRNOG00000036251 ## ENSRNOG00000036251|miRNA|rno-mir-297|rno-mir-297 [Source:miRBase;Acc:MI0000968] ## {Repeats: (CATA)n 4 128 -1 class=Simple_repeat,RMER12 815 838 1 class=LTR/ERVK,trf 21 44 0 class=trf,dust 102801324 102801347 0 class=dust} ## {MIR: rno-mir-297}

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noncloned miRBase miRNAs:

Page 1

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miR-Intess™

rno-mir-349

block2161989 (miRBase rno-mir-349) [miRNAknown_loopOverlap_mirtron_nonpairedHIGH_bulgeHIGH]

block48785 (miRBase rno-mir-297) [miRNAknown_rep_Multihit_shortStem_randfoldOK]