miR-Intess™

candidate novel loci of miRBase miRNAs

miRBaseNonMapped_randfoldOK (16 loci)

rno-mir-760-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-760-as 5arm	0	0	0	1	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-760-as 5arm	0	0	0	0.000	0	0	0	0	0	0

block1329967 (Antisense miRBase rno-mir-760-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-760-as

0.002

no

no

0.64/0.64

22/22/1.00

0.0

0.0

1

0

1

0

31

2

5arm

1

nd

0.14

2

1

1

na

na

Families

Member of family miR-760 (seed GGCUCUG): rno-mir-760, rno-mir-760, block103914_cand, block516146_cand

		reads	miRBase family seed
seed	--------------------------------UCGCUCC-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	-------------------------------TTCGCTCCCCACAGACCCAGAG-----------------------------------------------------------------	22	1
rat	GTGCTTCGGGGAAACGGGGTTTGGGTTGCATTTCGCTCCCCACAGACCCAGAGCCGAATTTCTGAGGTATCCGGGCTCTGGTGGCCTGAGGGGGGCGACGCGCCCCGTACCGAGGCAT
human	-------------------------------TTCGCTCCCCACAGACCCAGAGCCGAATTTCTGAGGTATCCGGGCTCTGGTGGACTGAGGGGGGCGAC-------------------
mouse	-------------------------------TTCGCTCCCCACAGACCCAGAGCCGAATTTCTGAGGTATCCGGGCTCTGGTGGCCTGAGGGGGGCGAC-------------------
	***************************************************** **************
	.............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................	ENSRNOT00000062138 ENSRNOG00000040385 rno-mir-760
rat	(((((((((....(((((((.......((...(((((((((.(((..((((((((..................))))))))....))).))))))))).))))))))).)))))))))	0.890 -61.88
human	.(((((((((.(((..((((((((..................))))))))....))).))))))))).	0.984 -35.87
mouse	.(((((((((.(((..((((((((..................))))))))....))).))))))))).	0.934 -35.87

rat	chromosome:2:218940545:218940662:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000062138|ENSRNOG00000040385 ## ENSRNOG00000040385|miRNA|rno-mir-760|rno-mir-760 [Source:miRBase;Acc:MI0006164] ## {SimpF: oe = 0.96 1 CpG, -1 Eponine} ## {ASMIR: rno-mir-760-as}
human	chromosome:1:94084942:94085099:-1	Same_strand|Boundary_non-coding|ENST00000260502|ENSG00000137936|protein_coding|Breast cancer anti-estrogen resistance protein 3 (SH2 domain-containing protein 3B)(Novel SH2-containing protein 2) [Source:UniProtKB/Swiss-Prot;Acc:O75815] ## Same_strand|Intronic_non-coding|ENST00000370244|ENSG00000137936|protein_coding|Breast cancer anti-estrogen resistance protein 3 (SH2 domain-containing protein 3B)(Novel SH2-containing protein 2) [Source:UniProtKB/Swiss-Prot;Acc:O75815] ## Opposite_strand|Boundary_non-coding|ENST00000390220|ENSG00000211575|miRNA|hsa-mir-760 [Source:miRBase;Acc:MI0005567] ## {SimpF: oe = 0.90 0 CpG, 1 Eponine, -1 Eponine, -1 Eponine} ## {ASMIR: hsa-mir-760-as}
mouse	chromosome:3:121996477:121996634:1	Opposite_strand|Boundary_non-coding|ENSMUST00000103257|ENSMUSG00000076456|miRNA|mmu-mir-760 [Source:miRBase;Acc:MI0004605] ## {SimpF: oe = 0.94 1 CpG, -1 Eponine} ## {ASMIR: mmu-mir-760-as}

rno-mir-183-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-183-as 3arm	0	0	0	0	0	0	0	1	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-183-as 3arm	0	0	0	0	0	0	0	0.000	0	0

block1640949 (Antisense miRBase rno-mir-183-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-183-as

0.001

no

no

0.46/0.46

24/24/1.00

0.0

0.0

1

0

1

0

24

4

3arm

1

nd

0.17

2

1

1

na

na

Families

Member of family novel204 (seed AGUGAAU): rno-mir-183, block1055690_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------AGUGAAU----------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	----------------------------------------------------------CAGTGAATTCTACCAGTGCCATAC------------------------	24	1
rat	CGGATCTGTCTCTGCTCTGTTTATGGCCCTTCGGTAATTCACTGACCGAGACTGTTCACAGTGAATTCTACCAGTGCCATACACAGGACAGGAGTCACACTCTCTG
human	----------------------ATGGCCCTTCGGTAATTCACTGACTGAGACTGTTCACAGTGAATTCTACCAGTGCCAT--------------------------
mouse	-GGATCTGTCTCTGCTCTGTTTATGGCCCTTCGGTAATTCACTGACTGAGACTGTTCACAGTGAATTCTACCAGTGCCATACACAGGACAGGAGTCACACTCTCC-
	************************ *********************************
	..<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....	ENSRNOT00000053574 ENSRNOG00000035451 rno-mir-183
rat	((((..((.(((((..((((.((((((.((..((((((((((((...(((....))).))))))))..)))))).)))))).))))..))).)).)).....))))	0.960 -35.10
human	(((((.((..((((((((((((..((((....))))))))))))..)))))).)))))	1.000 -20.10
mouse	(((..((.(((((..((((.((((((.((..((((((((((((..((((....))))))))))))..)))))).)))))).))))..))).)).)).....)))	0.970 -36.40

rat	chromosome:4:57075097:57075202:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053574|ENSRNOG00000035451 ## ENSRNOG00000035451|miRNA|rno-mir-183|rno-mir-183 [Source:miRBase;Acc:MI0000928] ## {ASMIR: rno-mir-183-as}
human	chromosome:7:129201964:129202109:1	Opposite_strand|Boundary_non-coding|ENST00000384958|ENSG00000207691|miRNA|hsa-mir-183 [Source:miRBase;Acc:MI0000273] ## {ASMIR: hsa-mir-183-as}
mouse	chromosome:6:30119653:30119756:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083685|ENSMUSG00000065619|miRNA|mmu-mir-183 [Source:miRBase;Acc:MI0000225] ## {ASMIR: mmu-mir-183-as}

rno-mir-434-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-434-as 5arm	0	0	1	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-434-as 5arm	0	0	0.000	0	0	0	0	0	0	0

block1981374 (Antisense miRBase rno-mir-434-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-434-as

0.001

no

no

0.50/0.50

24/24/1.00

0.0

0.0

1

0

1

0

10

18

5arm

1

nd

0.17

2

1

1

na

na

Families

Member of family novel151 (seed AGGAGUC): rno-mir-434, block1840982_cand

		reads	miRBase family seed
seed	-----------AGGAGUC-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------CAGGAGTCGAGTGATGGTTCAAAC---------------------------------------------------------------------------------	24	1
rat	tgattcaaacCAGGAGTCGAGTGATGGTTCAAACcacgagtttgacaatggttcaaaccatgagtcgagctgtggttcaaaccaagagtcaatcgacgtttcaaacctggagtca
	*******************************************************************************************************************
	......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................................	ENSRNOT00000062197 ENSRNOG00000040444 rno-mir-434
rat	.((((....(((((.(((((.((((((((..((((((.((((((((.(((((....)))))..))))))))))))))..)))))....))).)))))........))))))))).	0.990 -45.80

rat

chromosome:6:134186227:134186341:-1

Opposite_strand|Exonic_non-coding|ENSRNOT00000062197|ENSRNOG00000040444 ## ENSRNOG00000040444|miRNA|rno-mir-434|rno-mir-434 [Source:miRBase;Acc:MI0006147] ## {Repeats: trf 511 535 0 class=trf} ## {ASMIR: rno-mir-434-as}

rno-mir-380-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-380-as 3arm	0	0	0	2	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-380-as 3arm	0	0	0	0.000	0	0	0	0	0	0

block1981437 (Antisense miRBase rno-mir-380-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-380-as

0.001

no

no

0.50/0.50

22/22/1.00

0.0

0.0

2

0

1

0

28

3

3arm

1

nd

0.27

3

2

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------------------------CGCAUGU------------------------------------------	2	novel
		len	cloning frequencies
			T2S2
	---------------------------------------------------------------GCGCATGTTCTATGGTCAACCA----------------------------	22	2
rat	ACCCTCCACGAATGACTTTGATAATGAGAAGATGTGGACCATACTACATACGACACAGAAGTAGCGCATGTTCTATGGTCAACCATCTTTTCAGGTACCATGGAGAGAGGGTG
human	--------------------------------TGTGGACCATATTACATACGACACAGAGATAGCGCATGTTCTATGGTCAACCA----------------------------
mouse	--------------------------------TGTGGACCATACTACATACGACACAGAAGTAGCGCATGTTCTATGGTCAACCA----------------------------
	*********** ***************  ************************
	........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................	ENSRNOT00000053596 ENSRNOG00000035473 rno-mir-380
rat	((((((.....((((((.......((((((((((..(((((((..((((.((..((....))..)).))))..)))))))...)))))))))))))..))).....)))))).	0.470 -38.71
human	.((.(((((((..((((.((............)).))))..))))))).))..	1.000 -14.00
mouse	.((.(((((((..((((.((..((....))..)).))))..))))))).))..	1.000 -16.80

rat	chromosome:6:134390971:134391083:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053596|ENSRNOG00000035473 ## ENSRNOG00000035473|miRNA|rno-mir-380|rno-mir-380 [Source:miRBase;Acc:MI0006141] ## {ASMIR: rno-mir-380-as}
human	chromosome:14:100561063:100561215:-1	Opposite_strand|Boundary_non-coding|ENST00000362112|ENSG00000198982|miRNA|hsa-mir-380 [Source:miRBase;Acc:MI0000788] ## {ASMIR: hsa-mir-380-as}
mouse	chromosome:12:110949969:110950121:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083661|ENSMUSG00000065595|miRNA|mmu-mir-380 [Source:miRBase;Acc:MI0000797] ## {ASMIR: mmu-mir-380-as}

rno-mir-409-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-409-as 5arm	0	0	0	0	0	0	0	0	0	2
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-409-as 5arm	0	0	0	0	0	0	0	0	0	0.000

block1981453 (Antisense miRBase rno-mir-409-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-409-as

0.001

no

no

0.57/0.57

23/23/1.00

0.0

0.0

2

0

1

0

12

2

5arm

1

nd

0.13

2

2

1

na

na

Clusters

Located in cluster 64: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369

		reads	miRBase family seed
seed	-------------GGGGUUC------------------------------------------------------------	2	novel
		len	cloning frequencies
			T5S2
	------------AGGGGTTCACCGAGCAACATTCG---------------------------------------------	23	2
rat	TTGATACCGAAAAGGGGTTCACCGAGCAACATTCGTCCTCCAGATGCAAAGTTGCTCGGGTAACCTCTCTCCGAGTACCA
human	------------AGGGGTTCACCGAGCAACATTCGTCGTCCAGATGCAAAGTTGCTCGGGTAACCTCT------------
mouse	------------AGGGGTTCACCGAGCAACATTCGTCCTCCAGATGCAAAGTTGCTCGGGTAACCTCT------------
	************************* ******************************
	......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.....	ENSRNOT00000053696 ENSRNOG00000035573 rno-mir-409
rat	.((.(((((...(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))...)).))).))	1.000 -32.50
human	(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))	1.000 -29.80
mouse	(((((((..(((((((((.((((((.....)))).)).)))))))))..)))))))	1.000 -28.60

rat	chromosome:6:134424503:134424582:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053696|ENSRNOG00000035573 ## ENSRNOG00000035573|miRNA|rno-mir-409|rno-mir-409 [Source:miRBase;Acc:MI0003550] ## {ASMIR: rno-mir-409-as}
human	chromosome:14:100601370:100601489:-1	Opposite_strand|Boundary_non-coding|ENST00000362237|ENSG00000199107|miRNA|hsa-mir-409 [Source:miRBase;Acc:MI0001735] ## {SimpF: oe = 0.96 0 CpG} ## {ASMIR: hsa-mir-409-as}
mouse	chromosome:12:110981380:110981435:-1	Opposite_strand|Exonic_non-coding|ENSMUST00000083544|ENSMUSG00000065478|miRNA|mmu-mir-409 [Source:miRBase;Acc:MI0001160] ## {ASMIR: mmu-mir-409-as}

rno-mir-505-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-505-as 5arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-505-as 5arm	0	0	0	0	0	0	0	0	0	0.000

block3129955 (Antisense miRBase rno-mir-505-as) [miRBaseNonMapped_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-505-as

0.007

no

no

0.50/0.50

22/22/1.00

0.0

0.0

1

0

1

0

25

3

5arm

1

nd

0.23

2

1

1

na

na

		reads	miRBase family seed
seed	--------------------------AGGAAAC-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------GAGGAAACCAGCAAGTGTTGAC-----------------------------------------------------------------	22	1
rat	TCCACGAACTTGGTGATACTCCAGAGAGGAAACCAGCAAGTGTTGACGCTAACCTGGCAGAAACATCAATACTTCCTGGCTCCCCCACTGGGTGCATCAATTTACTACTGGA
human	--------------GATGCTCCAGAGAGGAAACCAGCAAGTGTTGACGCTAAACTGGCAGAAACATCAATACTTCCTGGCTCCCCCACTGGGTGCATC--------------
	*** ********************************** *********************************************
	...........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................	ENSRNOT00000054392 ENSRNOG00000036269 rno-mir-505
rat	((((..((.((((((.(((.((((...(((..((((.(((((((((.(((.....))).......))))))))).)))).)))....))))))))))))).)).....))))	0.990 -33.10
human	((((((((((...(((..((((.(((((((((.(((.....))).......))))))))).)))).)))....))))).)))))	0.995 -30.00

rat	chromosome:X:145928976:145929087:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000054392|ENSRNOG00000036269 ## ENSRNOG00000036269|miRNA|rno-mir-505|rno-mir-505 [Source:miRBase;Acc:MI0003720] ## {ASMIR: rno-mir-505-as}
human	chromosome:X:138833973:138834056:1	Opposite_strand|Intronic_coding|ENST00000370557|ENSG00000101974|protein_coding|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## Opposite_strand|Boundary_non-coding|ENST00000370543|ENSG00000101974|protein_coding|Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)(ATPase class I type 11C)(ATPase IG)(ATPase IQ)(ATPase class VI type 11C) [Source:UniProtKB/Swiss-Prot;Acc:Q8NB49] ## Opposite_strand|Exonic_non-coding|ENST00000384901|ENSG00000207633|miRNA|hsa-mir-505 [Source:miRBase;Acc:MI0003190] ## {ASMIR: hsa-mir-505-as}

miRBaseNonMapped_lenNOK_cloningOK_randfoldOK (3 loci)

rno-mir-214-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-214-as 3arm	6	2	0	1	0	0	6	1	2	3
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-214-as 3arm	0.000	0.000	0	0.000	0	0	0.000	0.000	0.000	0.000

block270523 (Antisense miRBase rno-mir-214-as) [miRBaseNonMapped_lenNOK_cloningOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-214-as

0.001

no

no

0.50/0.55

18/22/0.48

0.1

1.2

21

0

7

0

24

3

3arm

1

nd

0.14

2

21

7

na

na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------ACAGCAA--------------------------------------------------------	18	novel
seed	------------------------------------------------------------------------------------------CACAGCA---------------------------------------------------------	3	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T4S1	T4S2	T5S1	T5S2
	------------------------------------------------------------------------------------------CACAGCAAGTGTAGACAGGCA-------------------------------------------	21	1	-	1	3	-	1	2
	------------------------------------------------------------------------------------------CACAGCAAGTGTAGACAGG---------------------------------------------	19	1	1	-	3	-	1	-
	-----------------------------------------------------------------------------------------GCACAGCAAGTGTAGACAG----------------------------------------------	19	1	1	-	-	-	-	1
	------------------------------------------------------------------------------------------CACAGCAAGTGTAGACAG----------------------------------------------	18	2	-	-	-	-	-	-
	------------------------------------------------------------------------------------------CACAGCAAGTGTAGACAGGC--------------------------------------------	20	-	-	-	-	1	-	-
	------------------------------------------------------------------------------------------CACAGCAAGTGTAGACAGGCAG------------------------------------------	22	1	-	-	-	-	-	-
rat	-------------------GGTTGTCATTCAGGCTGGGTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCAAGTGTAGACAGGCAGACACATGACAACTCTGTCCATCCA------------------
human	CTGCTTTCTTTCAATGGCTGGTTGTCATTCAGGCTGGGTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCAAGTGTAGACAGGCAGACACATGACAACTCTGTCCAGCCAGGCCCTTGGTTCCTTCAG
mouse	-----------------------------------GGGTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCAAGTGTAGACAGGCAGACACATGACAACTCTGTCCAGCCA------------------
	************************************************************************************************* ***
	+++++                   +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++                  +++++	ENSRNOT00000047799 ENSRNOG00000026490 Dnm3
	+++++                   +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++                  +++++	ENSRNOT00000041058 ENSRNOG00000026490 Dnm3
	+++++                   +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++                  +++++	ENSRNOT00000011110 ENSRNOG00000026490 Dnm3
	.....                   ...........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<                  <<<<.	ENSRNOT00000053636 ENSRNOG00000035513 rno-mir-214
rat	((.((.......(((.(((((((((((((.((((((((((..((.((((((.((((...........)))).)))))).))..)))))))))).))))))))))))).))))).)).	0.870 -61.81
human	(((.......((((.(((((((((.......(((.(((((((((((((.((((((((((..((.((((((.((((...........)))).)))))).))..)))))))))).))))))))))))).)))))))))).)).))))......)))	0.976 -75.63
mouse	(((((((((((((.((((((((((..((.((((((.((((...........)))).)))))).))..)))))))))).)))))))))))))..........	0.986 -57.90

rat	chromosome:13:77916189:77916305:-1	Same_strand|Intronic_coding|ENSRNOT00000047799|ENSRNOG00000026490 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053636|ENSRNOG00000035513 ## ENSRNOG00000035513|miRNA|rno-mir-214|rno-mir-214 [Source:miRBase;Acc:MI0000954] ## ENSRNOG00000026490|protein_coding|Dnm3|Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin). [Source:UniProtKB/Swiss-Prot;Acc:Q08877] ## {ASMIR: rno-mir-214-as}
human	chromosome:1:170374531:170374684:1	Same_strand|Intronic_coding|ENST00000358155|ENSG00000197959|protein_coding|Dynamin-3 (EC 3.6.5.5)(Dynamin, testicular)(T-dynamin) [Source:UniProtKB/Swiss-Prot;Acc:Q9UQ16] ## Same_strand|Boundary_non-coding|ENST00000367733|ENSG00000197959|protein_coding|Dynamin-3 (EC 3.6.5.5)(Dynamin, testicular)(T-dynamin) [Source:UniProtKB/Swiss-Prot;Acc:Q9UQ16] ## Opposite_strand|Boundary_non-coding|ENST00000385214|ENSG00000207949|miRNA|hsa-mir-214 [Source:miRBase;Acc:MI0000290] ## {ASMIR: hsa-mir-214-as}
mouse	chromosome:1:164153503:164153603:-1	Same_strand|Intronic_coding|ENSMUST00000086074|ENSMUSG00000040265|protein_coding|dynamin 3 Gene [Source:MGI Symbol;Acc:MGI:1341299] ## Opposite_strand|Exonic_non-coding|ENSMUST00000083582|ENSMUSG00000065516|miRNA|mmu-mir-214 [Source:miRBase;Acc:MI0000698] ## {ASMIR: mmu-mir-214-as}

rno-mir-126-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-126-as 3arm	0	0	1	4	0	1	1	3	4	3
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-126-as 3arm	0	0	0.000	0.000	0	0.000	0.000	0.000	0.000	0.000

block1349738 (Antisense miRBase rno-mir-126-as) [miRBaseNonMapped_lenNOK_cloningOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-126-as

0.002

no

no

0.32/0.42

18/24/0.65

0.2

2.4

17

0

7

0

27

6

3arm

1

nd

0.18

3

17

7

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------------GCGUACC---------------------------------------------	16	novel
seed	----------------------------------------------------------------------ACCAAAA-----------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T2S2	T3S2	T4S1	T4S2	T5S1	T5S2
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAATGT-------------------------------	22	-	-	-	1	2	-	1
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAA----------------------------------	19	-	3	-	-	-	-	1
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAATGTG------------------------------	23	1	-	-	-	1	1	-
	-----------------------------------------------------------------CGCGTACCAAAAGTAATA-----------------------------------	18	-	1	-	-	-	-	1
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAATGTGC-----------------------------	24	-	-	-	-	-	1	-
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAAT---------------------------------	20	-	-	1	-	-	-	-
	-----------------------------------------------------------------CGCGTACCAAAAGTAATAATG--------------------------------	21	-	-	-	-	-	1	-
	---------------------------------------------------------------------TACCAAAAGTAATAATGTGCTG---------------------------	22	-	-	-	-	-	1	-
rat	GCACTCCCGGTGCTGCGCTGTTGACCACGCATTATTACTCACGGTACGAGTTTGAAGTGTCACAGCGCGTACCAAAAGTAATAATGTGCTGTCACCGGCAAAGACACGGCTCCAGGCT
human	------------------------CGGCGCATTATTACTCACGGTACGAGTTTGAAGTGTCACAGCGCGTACCAAAAGTAATAATGTCCCG---------------------------
mouse	------------------------CCGCGCATTATTACTCACGGTACGAGTTTGAAGTGTCACAGCGCGTACCAAAAGTAATAATGTGCTG---------------------------
	*  ************************************************************ * *
	--------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000026318 ENSRNOG00000019388 EGFL7_RAT
	..........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............................	ENSRNOT00000053714 ENSRNOG00000035591 rno-mir-126
rat	((....(((((.((..((((.((((..((((((((((((...((((((.((((((....))).))).))))))...))))))))))))..)))).))))..)))).)))......)).	0.800 -45.40
human	(((.(((((((((((...((((((.((((((....))).))).))))))...))))))))))).)))	1.000 -28.30
mouse	..(((((((((((((...((((((.((((((....))).))).))))))...)))))))))))))..	1.000 -30.00

rat	chromosome:3:4768093:4768210:-1	Opposite_strand|Intronic_coding|ENSRNOT00000026318|ENSRNOG00000019388 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053714|ENSRNOG00000035591 ## ENSRNOG00000019388|protein_coding|EGFL7_RAT|EGF-like domain-containing protein 7 precursor (Multiple EGF-like domain protein 7) (Multiple epidermal growth factor-like domain protein 7). [Source:UniProtKB/Swiss-Prot;Acc:Q6AZ60] ## ENSRNOG00000035591|miRNA|rno-mir-126|rno-mir-126 [Source:miRBase;Acc:MI0000898] ## {ASMIR: rno-mir-126-as}
human	chromosome:9:138684837:138684994:-1	Opposite_strand|Intronic_coding|ENST00000308874|ENSG00000172889|protein_coding|EGF-like domain-containing protein 7 Precursor (Multiple EGF-like domain protein 7)(Multiple epidermal growth factor-like domain protein 7)(Vascular endothelial statin)(VE-statin)(NOTCH4-like protein)(ZNEU1) [Source:UniProtKB/Swiss-Prot;Acc:Q9UHF1] ## Opposite_strand|Boundary_non-coding|ENST00000362291|ENSG00000199161|miRNA|hsa-mir-126 [Source:miRBase;Acc:MI0000471] ## {ASMIR: hsa-mir-126-as}
mouse	chromosome:2:26446833:26446990:-1	Opposite_strand|Intronic_coding|ENSMUST00000080087|ENSMUSG00000026921|protein_coding|EGF-like domain 7 Gene [Source:MGI (curated);Acc:Egfl7-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000083606|ENSMUSG00000065540|miRNA|mmu-mir-126 [Source:miRBase;Acc:MI0000153] ## {ASMIR: mmu-mir-126-as}

rno-mir-337-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-337-as 3arm	15	5	0	0	0	0	1	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-337-as 3arm	0.000	0.000	0	0	0	0	0.000	0	0	0

block1981368 (Antisense miRBase rno-mir-337-as) [miRBaseNonMapped_lenNOK_cloningOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-337-as

0.001

no

no

0.55/0.64

18/23/0.57

0.7

1.9

15

0

3

0

11

5

3arm

1

nd

0.17

1

21

3

na

na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------CUCCUGC---------------------------------------	11	novel
seed	------------------------------------------------------------------------ACUCCUG----------------------------------------	10	novel
		len	cloning frequencies
			T1S1	T1S2	T4S1
	------------------------------------------------------------------------ACTCCTGCATGACGCCGT-----------------------------	18	5	2	-
	-----------------------------------------------------------------------AACTCCTGCATGACGCCGTTCCC-------------------------	23	5	1	-
	------------------------------------------------------------------------ACTCCTGCATGACGCCGTTCCC-------------------------	22	3	-	1
	-----------------------------------------------------------------------AACTCCTGCATGACGCCGTTCC--------------------------	22	1	-	-
	-----------------------------------------------------------------------AACTCCTGCATGACGCCG------------------------------	18	-	1	-
	-----------------------------------------------------------------------AACTCCTGCATGACGCCGTT----------------------------	20	-	1	-
	-----------------------------------------------------------------------AACTCCTGCATGACGCCGT-----------------------------	19	1	-	-
rat	-----------------CGGTTGAAGGGGGTGAAGAAAGGCATCATATAGGAGCTGAATGGCTGTGCAATCAACTCCTGCATGACGCCGTTCCCACCCCCCAACT--------------
human	GGTCCGGGGGCTGCGCGTGGTTGAAGGGGATGAAGAAAGGCATCATATAGGAGCTGGATAACTGTGC-ATCAACTCCTGTATGAAGCCGTTCCCACCCCCCAACTACTGACTACGGGCC
mouse	-------------------------------GAAGAAAGGCATCATATAGGAGCTGAATGGCTGTGCAATCAACTCCTGCATGACGCCGTTCCC-------------------------
	************************* **  ****** *********** **** *********
	.....                 ...<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<              <<<<<	ENSRNOT00000053650 ENSRNOG00000035527 rno-mir-337
rat	.(((((..(((((((..(((.(((.((((.((((((.(((.((......)).))).)))))).)))).))).))).))))))))))))	1.000 -41.90
human	((((((.((....((.(((((((..((((.((..(((.(((.(((((((((((...(((........ )))..))))))))))).))).))).)))))).))))))))).)).))))))	0.995 -52.90
mouse	...(((.(((.((((.((((((.(((.((......)).))).)))))).)))).))).)))..	1.000 -23.40

rat	chromosome:6:134176763:134176850:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053650|ENSRNOG00000035527 ## ENSRNOG00000035527|miRNA|rno-mir-337|rno-mir-337 [Source:miRBase;Acc:MI0000614] ## {ASMIR: rno-mir-337-as}
human	chromosome:14:100410578:100410695:-1	Opposite_strand|Boundary_non-coding|ENST00000362281|ENSG00000199151|miRNA|hsa-mir-337 [Source:miRBase;Acc:MI0000806] ## {ASMIR: hsa-mir-337-as}
mouse	chromosome:12:110823992:110824119:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083592|ENSMUSG00000065526|miRNA|mmu-mir-337 [Source:miRBase;Acc:MI0000615] ## {ASMIR: mmu-mir-337-as}

miRBaseNonMapped_cloningHIGH_multiarm_DicerNOK_randfoldOK (1 loci)

rno-mir-24-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-1-as 5arm	0	0	0	0	1	0	0	0	0	0.500
rno-mir-24-1-as 3arm	1	6	2	3	39	25	1	3	3	14
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-1-as 5arm	0	0	0	0	0.000	0	0	0	0	0.000
rno-mir-24-1-as 3arm	0.000	0.000	0.000	0.000	0.002	0.002	0.000	0.000	0.000	0.001

sblock5243 (Antisense miRBase rno-mir-24-1-as) [miRBaseNonMapped_cloningHIGH_multiarm_DicerNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-24-1-as

0.003

no

no

0.44/0.58

18/23/0.78

1.0 0.0

0.3 1.5

3 44

0 0

2 10

0 0

25 31

1 3

5arm 3arm

2 2

nd nd

0.16 0.27

2 3

100

10

2

4

Families

Member of family miR-370 (seed CCUGCUG): rno-mir-370, rno-mir-24-1, rno-mir-24-2, block638635_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------------AUAUCAG---------------------------------------------	85	novel
seed	----------------------------------------------------------------GAUAUCA----------------------------------------------	9	novel
seed	------------------------------------------------------------------UAUCAGC--------------------------------------------	3	novel
seed	--------------------------GUUCCUG------------------------------------------------------------------------------------	2	novel
seed	-----------------------------CCUGCUG---------------------------------------------------------------------------------	1	miR-370
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------------------------------------------------GATATCAGCTCAGTAGGCACCG-------------------------------	22	-	3	1	-	16	2	-	2	1	4
	----------------------------------------------------------------GATATCAGCTCAGTAGGCAC---------------------------------	20	1	1	1	2	7	8	-	-	1	4
	----------------------------------------------------------------GATATCAGCTCAGTAGGCACC--------------------------------	21	-	-	-	-	4	6	-	1	-	1
	----------------------------------------------------------------GATATCAGCTCAGTAGGC-----------------------------------	18	-	-	-	-	7	-	1	-	-	3
	----------------------------------------------------------------GATATCAGCTCAGTAGGCA----------------------------------	19	-	-	-	-	3	2	-	-	-	1
	-------------------------TGTTCCTGCTGAACTGAGCCA-----------------------------------------------------------------------	21	-	-	-	-	1	-	-	-	-	1
	---------------------------------------------------------------TGATATCAGCTCAGTAGG------------------------------------	18	-	-	-	-	-	2	-	-	-	-
	---------------------------------------------------------------TGATATCAGCTCAGTAGGCACC--------------------------------	22	-	-	-	-	-	2	-	-	-	-
	---------------------------------------------------------------TGATATCAGCTCAGTAGGCAC---------------------------------	21	-	-	-	-	-	1	-	-	-	1
	---------------------------------------------------------------TGATATCAGCTCAGTAGGC-----------------------------------	19	-	1	-	-	-	-	-	-	1	-
	----------------------------------------------------------------GATATCAGCTCAGTAGGCACCGG------------------------------	23	-	1	-	-	1	-	-	-	-	-
	-----------------------------------------------------------------ATATCAGCTCAGTAGGCACCG-------------------------------	21	-	-	-	-	-	2	-	-	-	-
	-----------------------------------------------------------------ATATCAGCTCAGTAGGCACC--------------------------------	20	-	-	-	-	1	-	-	-	-	-
	----------------------------TCCTGCTGAACTGAGCCAG----------------------------------------------------------------------	19	-	-	-	-	1	-	-	-	-	-
	---------------------------------------------------------------TGATATCAGCTCAGTAGGCA----------------------------------	20	-	-	-	1	-	-	-	-	-	-
rat	GCTTTTTGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATCACAGCTGGGCAGTGC
human	-------------GGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTAAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCCAATC-------GACAGCCC
mouse	------TGCTCAAGGGCTCGACTCCTGTTCCTGCTGAACTGAGCCAGTGTGTGAAATGAGAACTGATATCAGCTCAGTAGGCACCGGAGGGCGGGTCC-------------------
	*************************************** *********************************************
	..........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................	ENSRNOT00000053691 ENSRNOG00000035568 rno-mir-24-1
rat	((...(((((((.(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..))))))).........))))))).))	0.970 -48.52
human	(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..)))))))....       ........	0.990 -43.22
mouse	.......(((((((.((((.((.((((((((.((((..((((.............))))...)))).)))))))).)).))))..)))))))	1.000 -41.72

rat	chromosome:17:7350950:7351066:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053691|ENSRNOG00000035568 ## ENSRNOG00000035568|miRNA|rno-mir-24-1|rno-mir-24-1 [Source:miRBase;Acc:MI0000854] ## {ASMIR: rno-mir-24-1-as}
human	chromosome:9:96888103:96888199:-1	Opposite_strand|Intronic_non-coding|ENST00000395357|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## Opposite_strand|Boundary_non-coding|ENST00000395356|ENSG00000148120|protein_coding|Aminopeptidase O (AP-O)(EC 3.4.11.-) [Source:UniProtKB/Swiss-Prot;Acc:Q8N6M6] ## {ASMIR: hsa-mir-24-1-as}
mouse	chromosome:13:63402507:63402598:-1	Opposite_strand|Intronic_coding|ENSMUST00000060660|ENSMUSG00000056199|protein_coding| ## Opposite_strand|Intronic_non-coding|ENSMUST00000021911|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## Opposite_strand|Boundary_non-coding|ENSMUST00000091560|ENSMUSG00000021458|protein_coding|RIKEN cDNA 2010111I01 gene Gene [Source:MGI Symbol;Acc:MGI:1919311] ## {ASMIR: mmu-mir-24-1-as}

Back to summary page

candidate novel loci of miRBase miRNAs:

Page 1

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