miR-Intess: classification

candidate novel loci of miRBase miRNAs

miRBaseNonMapped_cloningHIGH_multiarm_DicerNOK_randfoldOK (1 loci)

miRBaseNonMapped_lenNOK_multiarm_DicerOK_randfoldOK (1 loci)

rno-mir-9-3-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-3-as 5arm	0.333	1.333	0	0	0	0	0	0	0	0
rno-mir-9-3-as 3arm	0.333	0.333	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-3-as 5arm	0.000	0.000	0	0	0	0	0	0	0	0
rno-mir-9-3-as 3arm	0.000	0.000	0	0	0	0	0	0	0	0

sblock793 (Antisense miRBase rno-mir-9-3-as) [miRBaseNonMapped_lenNOK_multiarm_DicerOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-9-3-as	0.001	no	no	0.32/0.38	18/22/0.40	0.3 1.0	1.7 1.0	3 2	0 0	2 2	0 0	31 27	4 5	5arm 3arm	3 3	nd nd	0.11 0.05	1 1	5	2	1	2

Families
Member of family novel152 (seed CAUACAG): rno-mir-9-3, rno-mir-9-1

		reads	miRBase family seed
seed	--------------------------------UCGGUUA----------------------------------------------------------------------------	2	novel
seed	---------------------------------CGGUUAU---------------------------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------UACAGCU---------------------------------------	1	novel
seed	-------------------------------------------------------------------CAUACAG-----------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	--------------------------------------------------------------------ATACAGCTAGATAACCAA-----------------------------	18	1	-
	------------------------------------------------------------------TCATACAGCTAGATAACCAAAG---------------------------	22	-	1
	--------------------------------TCGGTTATCTAGCTTTATGAC--------------------------------------------------------------	21	-	1
	-------------------------------TTCGGTTATCTAGCTTTA------------------------------------------------------------------	18	-	1
	-------------------------------TTCGGTTATCTAGCTTTAT-----------------------------------------------------------------	19	1	-
rat	GCACGCAGAAGTTGTTAGAGTCATTTCTACTTTCGGTTATCTAGCTTTATGACGGCTCTGTGGCACTCATACAGCTAGATAACCAAAGAGAGAAACGGGCCTCCCATTCGCCGGC
human	-----------------------TTTCTACTTTCGGTTATCTAGCTTTATGACGGCTCTGTGGCACTCATACAGCTAGATAACCAAAGAGAGA----------------------
mouse	-----------------------------CTTTCGGTTATCTAGCTTTATGACGGCTCTGTGGCACTCATACAGCTAGATAACCAAAG---------------------------
	***********************************************************
	...................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................	ENSRNOT00000053703 ENSRNOG00000035580 rno-mir-9-3
rat	((.((..(((..((..((.(((.(((((.((((.((((((((((((.(((((..(((....)))..))))).)))))))))))))))))))))....)))))..)))))..))))	0.860 -40.70
human	(((((.((((.((((((((((((.(((((..(((....)))..))))).)))))))))))))))))))))	1.000 -32.30
mouse	((((.((((((((((((.(((((..(((....)))..))))).))))))))))))))))	1.000 -27.80

rat	chromosome:1:135254122:135254236:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053703\|ENSRNOG00000035580 ## ENSRNOG00000035580\|miRNA\|rno-mir-9-3\|rno-mir-9-3 [Source:miRBase;Acc:MI0000839] ## {ASMIR: rno-mir-9-3-as}
human	chromosome:15:87712263:87712332:-1	Opposite_strand\|Exonic_non-coding\|ENST00000385084\|ENSG00000207819\|miRNA\|hsa-mir-9-3 [Source:miRBase;Acc:MI0000468] ## {SimpF: oe = 0.76 0 CpG,rank = 2 -1 FirstEF} ## {ASMIR: hsa-mir-9-3-as}
mouse	chromosome:7:86650119:86650273:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083611\|ENSMUSG00000065545\|miRNA\|mmu-mir-9-3 [Source:miRBase;Acc:MI0000721] ## {SimpF: oe = 0.93 1 CpG} ## {ASMIR: mmu-mir-9-3-as}

Back to summary page

candidate novel loci of miRBase miRNAs:

Page 1

Page 3

miR-Intess™

rno-mir-9-3-as

sblock793 (Antisense miRBase rno-mir-9-3-as) [miRBaseNonMapped_lenNOK_multiarm_DicerOK_randfoldOK]