========== sblock653 (miRBaseNonMapped rno-mir-344-5p) [miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock653: 0.001 randfold mouseZ14p95_sblock653: 0.001 #forester mouseZ14p95_sblock653: 0.945102 #identity: 95.24 sblock653 TGATCTAGCCAAAGCCTGAC #rat_gr955144_libT1S1 20 102 sblock653 TGATCTAGCCAAAGCCTG #rat_gr955142_libT1S2 18 101 sblock653 TGATCTAGCCAAAGCCTG #rat_gr955142_libT1S1 18 91 sblock653 TGATCTAGCCAAAGCCTGAC #rat_gr955144_libT1S2 20 81 sblock653 TGATCTAGCCAAAGCCTGACTG #rat_gr955151_libT1S1 22 67 sblock653 TGATCTAGCCAAAGCCTGACTGT #rat_gr955152_libT1S2 23 47 sblock653 TGATCTAGCCAAAGCCTGACTG #rat_gr955151_libT1S2 22 36 sblock653 TGATCTAGCCAAAGCCTGACT #rat_gr955150_libT1S1 21 34 sblock653 TGATCTAGCCAAAGCCTGACT #rat_gr955150_libT1S2 21 25 sblock653 TGATCTAGCCAAAGCCTGA #rat_gr955143_libT1S2 19 24 sblock653 TGATCTAGCCAAAGCCTGACTGT #rat_gr955152_libT1S1 23 19 sblock653 TGATCTAGCCAAAGCCTGA #rat_gr955143_libT1S1 19 17 sblock653 CCTGATCTAGCCAAAGCCTGAC #rat_gr378196_libT1S1 22 11 sblock653 CCTGATCTAGCCAAAGCC #rat_gr378192_libT1S1 18 9 sblock653 CCTGATCTAGCCAAAGCCTGAC #rat_gr378196_libT1S2 22 6 sblock653 TGATCTAGCCAAAGCCTGACTGTA #rat_gr955153_libT1S2 24 3 sblock653 CCTGATCTAGCCAAAGCC #rat_gr378192_libT1S2 18 3 sblock653 CTAGCCAAAGCCTGACTGT #rat_gr412719_libT1S2 19 2 sblock653 TGATCTAGCCAAAGCCTGAC #rat_gr955144_libT5S1 20 2 sblock653 CCTGATCTAGCCAAAGCCTG #rat_gr378194_libT1S1 20 2 sblock653 CCTGATCTAGCCAAAGCCT #rat_gr378193_libT1S1 19 2 sblock653 TGATCTAGCCAAAGCCTGACTGTAA #rat_gr955154_libT1S2 25 1 sblock653 CTAGCCAAAGCCTGACTGT #rat_gr412719_libT1S1 19 1 sblock653 GATCTAGCCAAAGCCTGACTG #rat_gr520864_libT1S1 21 1 sblock653 GATCTAGCCAAAGCCTGACTG #rat_gr520864_libT1S2 21 1 sblock653 TGATCTAGCCAAAGCCTGAC #rat_gr955144_libT3S1 20 1 sblock653 TGATCTAGCCAAAGCCTGAC #rat_gr955144_libT4S1 20 1 sblock653 CCTGATCTAGCCAAAGCCTGAC #rat_gr378196_libT2S2 22 1 sblock653 CCTGATCTAGCCAAAGCCTGAC #rat_gr378196_libT4S2 22 1 sblock653 ACCTGATCTAGCCAAAGCCTGAC #rat_gr106984_libT1S2 23 1 sblock653 TGATCTAGCCAAAGCCTGA #rat_gr955143_libT5S1 19 1 sblock653 TGATCTAGCCAAAGCCTGA #rat_gr955143_libT5S2 19 1 sblock653 CCTGATCTAGCCAAAGCCTGA #rat_gr378195_libT1S1 21 1 sblock653 TGATCTAGCCAAAGCCTG #rat_gr955142_libT2S2 18 1 sblock653 TGATCTAGCCAAAGCCTG #rat_gr955142_libT4S1 18 1 sblock653 TGATCTAGCCAAAGCCTG #rat_gr955142_libT5S1 18 1 sblock653 CCTGATCTAGCCAAAGCCTG #rat_gr378194_libT1S2 20 1 sblock653 ACCTGATCTAGCCAAAGCCT #rat_gr106983_libT1S2 20 1 sblock653 TCAGGCTCCTGGCTAGATTCCAGG #rat_gr819401_libMirbase_rno-miR-344-5p 24 1 sblock653 TCAGGCTCCTGGCTAGATTC #rat_gr819400_libT1S1 20 1 sblock653 GCAGCCAGGGTTTTTACCAGTCAGGCTCCTGGCTAGATTCCAGGTACCAACTGGTACCTGATCTAGCCAAAGCCTGACTGTAAGCTGTAAAAACAAAGGAAGACTGC mouseZ14p95 -----CAGGGTTTTTACCAGTCAGGCTCCTGGCTAGATTCCAGGTACCAGCTGGTACCTGATCTAGCCAAAGCCTGACTGTAAGCCCTG------------------ ******************************************** *********************************** * sblock653 ...>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>................ #ENSRNOT00000053681 ENSRNOG00000035558 sblock653 ((((((...((((((((((((((((((..(((((((((..((((((((....))))))))))))))))).))))))))))......))))))))...))....)))) 1.000 -57.10 # mouseZ14p95 ((((((((....((((((((((..(((((((((..((((((((....))))))))))))))))).)))))))))).)))))))) 1.000 -57.30 # #sblock653 chromosome:1:115954563:115954669:-1 Same_strand|Exonic_non-coding|ENSRNOT00000053681|ENSRNOG00000035558 ## ENSRNOG00000035558|miRNA|| #mouseZ14p95 chromosome:7:69022660:69022743:-1 Same_strand|Exonic_non-coding|ENSMUST00000083634|ENSMUSG00000065568|miRNA|mmu-mir-344-1 [Source:miRBase;Acc:MI0000630] ## {MIR: mmu-mir-344-1} ========== block1544439 (miRBaseNonMapped rno-mir-182) [miRBaseNonMapped_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH] ========== #randfold block1544439: 0.325 #forester #identity: 0.00 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT5S2 23 604 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT5S2 24 402 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT1S1 23 401 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT1S1 21 389 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT5S1 23 294 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT5S2 21 268 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT1S1 24 245 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT5S1 24 235 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT1S1 19 202 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT5S2 19 197 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT5S2 20 157 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT5S1 19 150 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT2S1 19 130 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT1S1 20 123 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT5S2 18 121 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT5S1 21 113 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT2S2 24 80 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT2S1 21 78 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT5S2 22 72 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT2S2 23 67 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT2S1 20 62 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT5S1 20 55 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT2S1 23 53 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT1S1 18 53 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT2S2 21 49 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT5S1 18 43 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT1S1 22 41 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT2S2 19 37 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT2S2 20 36 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT1S1 20 33 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT2S1 18 33 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT2S2 19 30 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT2S1 20 30 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT2S1 19 29 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT3S2 23 26 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT2S2 21 25 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT2S1 24 24 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT3S2 24 24 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT5S1 22 24 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT3S2 20 23 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT4S2 20 23 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT3S1 20 22 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT3S2 21 22 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT3S1 23 21 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT3S1 19 20 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT1S2 20 20 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT3S2 19 19 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT3S2 21 19 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT1S1 19 18 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT4S2 19 18 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT5S2 20 18 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT5S1 20 16 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT2S2 20 16 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT2S1 21 15 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT4S2 21 15 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT5S2 19 14 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT1S2 19 13 block1544439 GGCAATGGTAGAACTCACAC #rat_gr592614_libT4S1 20 13 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT2S1 22 12 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT2S2 22 12 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT3S2 19 12 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT5S2 23 11 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT3S1 24 11 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT2S2 18 11 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT4S1 19 9 block1544439 GCAATGGTAGAACTCACAC #rat_gr528282_libT5S1 19 9 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT2S2 22 8 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT3S1 21 8 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT2S2 21 7 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT1S2 24 7 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT5S1 21 7 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT3S2 22 7 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT2S2 18 7 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT5S2 18 7 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT3S1 21 7 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT1S1 21 6 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT2S2 23 6 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT3S2 19 6 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT1S2 21 6 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT3S1 19 6 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT1S2 20 5 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT3S2 20 5 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT4S2 20 5 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT4S2 21 5 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT4S1 18 5 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT1S1 21 5 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT5S2 21 5 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT1S1 22 5 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT2S2 19 5 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT2S1 18 5 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT3S1 18 5 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT2S2 19 5 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT3S1 20 5 block1544439 AATGGTAGAACTCACACC #rat_gr63703_libT2S2 18 4 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT1S1 20 4 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT2S2 20 4 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT3S1 21 4 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT1S1 22 4 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT3S2 23 4 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT5S1 23 4 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT3S2 22 4 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT4S2 22 4 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT1S1 19 4 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT3S2 18 4 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT1S2 21 3 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT4S1 21 3 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT5S1 21 3 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT5S2 21 3 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT3S2 22 3 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT5S1 22 3 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT1S1 18 3 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT2S1 22 3 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT2S2 22 3 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT5S2 22 3 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT1S2 23 3 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT4S1 23 3 block1544439 TTTGGCAATGGTAGAACTCACAC #rat_gr1170360_libT4S2 23 3 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT1S1 18 3 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT2S1 18 3 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT3S1 18 3 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT5S1 18 3 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT5S1 19 3 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT1S1 20 3 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT1S1 18 3 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT3S2 19 3 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT5S2 20 3 block1544439 TTTGGCAATGGTAGAACTCA #rat_gr1170357_libT3S2 20 3 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT1S2 19 3 block1544439 TTTGGCAATGGTAGAACTC #rat_gr1170356_libT4S2 19 3 block1544439 AATGGTAGAACTCACACC #rat_gr63703_libT1S1 18 2 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT2S1 20 2 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT3S1 20 2 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT4S1 20 2 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT5S2 20 2 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT1S2 22 2 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT3S1 22 2 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT4S1 22 2 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT1S2 23 2 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT2S1 18 2 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT2S2 18 2 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT4S2 18 2 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT5S1 18 2 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT1S2 21 2 block1544439 TGGCAATGGTAGAACTCACAC #rat_gr1007761_libT4S1 21 2 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT3S1 22 2 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT4S1 22 2 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT2S1 19 2 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT3S1 19 2 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT2S1 20 2 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT3S1 20 2 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT4S1 20 2 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT1S2 18 2 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT4S2 18 2 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT3S1 19 2 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT4S2 19 2 block1544439 TGGCAATGGTAGAACTCA #rat_gr1007758_libT2S2 18 2 block1544439 TTGGCAATGGTAGAACTCA #rat_gr1142829_libT5S2 19 2 block1544439 TTGGCAATGGTAGAACTC #rat_gr1142828_libT3S2 18 2 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT3S1 18 2 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT3S2 18 2 block1544439 GGCAATGGTAGAACTCACACCG #rat_gr592616_libT5S1 22 1 block1544439 TTTGGCAATGGTAGAACTCACACCG #rat_gr1170362_libMirbase_rno-miR-182 25 1 block1544439 AATGGTAGAACTCACACC #rat_gr63703_libT3S1 18 1 block1544439 AATGGTAGAACTCACACC #rat_gr63703_libT4S2 18 1 block1544439 CAATGGTAGAACTCACACC #rat_gr274123_libT3S2 19 1 block1544439 CAATGGTAGAACTCACACC #rat_gr274123_libT4S1 19 1 block1544439 GCAATGGTAGAACTCACACC #rat_gr528283_libT5S1 20 1 block1544439 GGCAATGGTAGAACTCACACC #rat_gr592615_libT3S2 21 1 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT2S1 22 1 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT4S2 22 1 block1544439 TGGCAATGGTAGAACTCACACC #rat_gr1007762_libT5S2 22 1 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT1S1 23 1 block1544439 TTGGCAATGGTAGAACTCACACC #rat_gr1142833_libT3S1 23 1 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT4S1 24 1 block1544439 TTTGGCAATGGTAGAACTCACACC #rat_gr1170361_libT4S2 24 1 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT1S2 18 1 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT3S1 18 1 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT3S2 18 1 block1544439 CAATGGTAGAACTCACAC #rat_gr274122_libT5S2 18 1 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT1S2 22 1 block1544439 TTGGCAATGGTAGAACTCACAC #rat_gr1142832_libT5S1 22 1 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT1S2 18 1 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT3S2 18 1 block1544439 GCAATGGTAGAACTCACA #rat_gr528281_libT5S2 18 1 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT4S2 19 1 block1544439 GGCAATGGTAGAACTCACA #rat_gr592613_libT5S2 19 1 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT3S2 20 1 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT4S2 20 1 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT5S1 20 1 block1544439 TGGCAATGGTAGAACTCACA #rat_gr1007760_libT5S2 20 1 block1544439 TTGGCAATGGTAGAACTCACA #rat_gr1142831_libT2S1 21 1 block1544439 TTGGCAATGGTAGAACTCACA #rat_gr1142831_libT2S2 21 1 block1544439 TTGGCAATGGTAGAACTCACA #rat_gr1142831_libT3S2 21 1 block1544439 TTGGCAATGGTAGAACTCACA #rat_gr1142831_libT5S1 21 1 block1544439 TTGGCAATGGTAGAACTCACA #rat_gr1142831_libT5S2 21 1 block1544439 TTTGGCAATGGTAGAACTCACA #rat_gr1170359_libT1S2 22 1 block1544439 GGCAATGGTAGAACTCAC #rat_gr592612_libT4S1 18 1 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT2S1 19 1 block1544439 TGGCAATGGTAGAACTCAC #rat_gr1007759_libT5S1 19 1 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT1S1 20 1 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT2S2 20 1 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT3S2 20 1 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT4S2 20 1 block1544439 TTGGCAATGGTAGAACTCAC #rat_gr1142830_libT5S1 20 1 block1544439 TTTGGCAATGGTAGAACTCAC #rat_gr1170358_libT4S2 21 1 block1544439 TGGCAATGGTAGAACTCA #rat_gr1007758_libT4S1 18 1 block1544439 TTGGCAATGGTAGAACTCA #rat_gr1142829_libT1S1 19 1 block1544439 TTGGCAATGGTAGAACTCA #rat_gr1142829_libT2S1 19 1 block1544439 TTGGCAATGGTAGAACTC #rat_gr1142828_libT1S1 18 1 block1544439 TTGGCAATGGTAGAACTC #rat_gr1142828_libT4S1 18 1 block1544439 TTTGGCAATGGTAGAACT #rat_gr1170355_libT1S2 18 1 block1544439 acgcgggtctagctgccggaggcctcccaccgttTTTGGCAATGGTAGAACTCACACCggta ************************************************************** block1544439 ((.(((((....((((((...(((.............)))..)))))).....)).))))). 0.970 -18.22 # #block1544439 chromosome:4:57071295:57071356:-1 intergenic ========== block25492 (Antisense miRBase rno-mir-324-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block25492: 0.008 randfold humanZ8p1_block25492: 0.004 randfold mouseZ22p1_block25492: 0.055 #forester humanZ8p1_block25492: 0.977776 forester mouseZ22p1_block25492: 1 #identity: 96.30 block25492 AATGCCCTAGGGGATGCG #rat_gr63037_libT2S2 18 1 block25492 CAATGCCCTAGGGGATGC #rat_gr273975_libT1S1 18 1 block25492 --------------TTCTTCACAGTTGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGAGGAGGCATAGTCAGTTCGGCTTCTG----GAGAG------------ humanZ8p1 ------------CTTTCTTCCCAGTCGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGGGGAGGCATAGTCAGCTCAGCTTCTGCGAAGAGAG------------ mouseZ22p1 GGAGCCCTATGGCTTTCTTCACAGTTGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGAGGAGGCATAGTCAGTTC-TCTTCTG----GAGGGTGGTGCTGCTCT ****** **** ************************************************************************** ************** ** ****** *** * block25492 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ +++++ #ENSRNOT00000024973 ENSRNOG00000018114 Acadvl block25492 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ +++++ #ENSRNOT00000056796 ENSRNOG00000018114 Acadvl block25492 ..... ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... ..... ..... #ENSRNOT00000053642 ENSRNOG00000035519 rno-mir-324 block25492 .((((((.(((((((...(((((...((((..(((...(((((((((.(((...............))).)))))))))...)))..)).))..)))))..)))))))..)) )))). 1.000 -47.66 # humanZ8p1 ((((((((.(((..((((..(((((...(((((.(((...(((((((((.(((...............))).)))))))))...))).))).))..))))).)))).....))).)))))))) 0.984 -54.46 # mouseZ22p1 (((((..(((.((((((....(((..(((...(((((...((((..(((...(((((((((.(((...............))).)))))))))...)))..)).))..)))))....) ))..))) )))))).)))..))))) 0.951 -55.86 # #block25492 chromosome:10:56858022:56858138:-1 Same_strand|Intronic_coding|ENSRNOT00000056796|ENSRNOG00000018114 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053642|ENSRNOG00000035519 ## ENSRNOG00000035519|miRNA|rno-mir-324|rno-mir-324 [Source:miRBase;Acc:MI0000594] ## ENSRNOG00000018114|protein_coding|Acadvl|Very long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.-) (VLCAD). [Source:UniProtKB/Swiss-Prot;Acc:P45953] ## {ASMIR: rno-mir-324-as} #humanZ8p1 chromosome:17:7067320:7067442:1 Same_strand|Intronic_coding|ENST00000322910|ENSG00000072778|protein_coding|Very long-chain specific acyl-CoA dehydrogenase, mitochondrial Precursor (VLCAD)(EC 1.3.99.-) [Source:UniProtKB/Swiss-Prot;Acc:P49748] ## Opposite_strand|Boundary_non-coding|ENST00000362183|ENSG00000199053|miRNA|hsa-mir-324 [Source:miRBase;Acc:MI0000813] ## {ASMIR: hsa-mir-324-as} #mouseZ22p1 chromosome:11:69825520:69825661:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000019362|ENSMUSG00000020888|protein_coding|dishevelled 2, dsh homolog (Drosophila) Gene [Source:MGI (curated);Acc:Dvl2-001] ## Opposite_strand|Exonic_non-coding|ENSMUST00000102575|ENSMUSG00000020888|protein_coding|dishevelled 2, dsh homolog (Drosophila) Gene [Source:MGI (curated);Acc:Dvl2-001] ## Same_strand|Intronic_coding|ENSMUST00000102574|ENSMUSG00000018574|protein_coding|acyl-Coenzyme A dehydrogenase, very long chain Gene [Source:MGI (curated);Acc:Acadvl-002] ## {ASMIR: mmu-mir-324-as} ========== block25628 (Antisense miRBase rno-mir-497-as) [miRBaseNonMapped_lenNOK] ========== #randfold block25628: 0.012 randfold humanZ11p1_block25628: 0.002 randfold mouseZ24p1_block25628: 0.002 #forester humanZ11p1_block25628: 1 forester mouseZ24p1_block25628: 1 #identity: 100.00 block25628 GTACAAACCACAGTGTGC #rat_gr627981_libT1S2 18 1 block25628 CAGGCCTCAGCGGTGCCTCCCATACCCTCGCTCTAACACCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGCTGCTGGGGCGGGAGCAGGACTGGGGTGTG humanZ11p1 --------------------------------------CCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGC----------------------------- mouseZ24p1 --------------------------------------CCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGC----------------------------- ************************************************** block25628 ..............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................ #ENSRNOT00000054383 ENSRNOG00000036260 rno-mir-497 block25628 ((.(((((((...((.(((((........((((((.((.((((.(((((((((....((((......))))..))))))))).)))).)).)))))))))))))...))))))).)) 0.890 -55.00 # humanZ11p1 .((((.(((((((((....((((......))))..))))))))).)))). 1.000 -24.20 # mouseZ24p1 .((((.(((((((((....((((......))))..))))))))).)))). 1.000 -24.20 # #block25628 chromosome:10:57073823:57073939:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000054383|ENSRNOG00000036260 ## ENSRNOG00000036260|miRNA|rno-mir-497|rno-mir-497 [Source:miRBase;Acc:MI0003724] ## {ASMIR: rno-mir-497-as} #humanZ11p1 chromosome:17:6861891:6862047:1 Opposite_strand|Boundary_non-coding|ENST00000385056|ENSG00000207791|miRNA|hsa-mir-497 [Source:miRBase;Acc:MI0003138] ## {ASMIR: hsa-mir-497-as} #mouseZ24p1 chromosome:11:70048188:70048344:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000093601|ENSMUSG00000070109|miRNA|mmu-mir-497 [Source:miRBase;Acc:MI0004636] ## {ASMIR: mmu-mir-497-as} ========== block30169 (Antisense miRBase rno-mir-193-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block30169: 0.002 randfold mouseZ28p1_block30169: 0.007 #forester mouseZ28p1_block30169: 0.978933 #identity: 98.08 block30169 ATCTTGCCCGCAAAGACCC #rat_gr225689_libT5S1 19 1 block30169 GAAAATGCCGGTCCTGGGAGCCGAGGACTGGGACTTTGTAGGCCAGTTGAACTGACACCCTCATCTTGCCCGCAAAGACCCAGCTCTCAGCTCCCGTCCGCCTTGGAGTTCG mouseZ28p1 -----------------------------GGGACTTTGTAGGCCAGTTGAACTGACACTCTCATCTTGCCCGCAAAGACCC------------------------------- ***************************** ********************** block30169 ....................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................ #ENSRNOT00000053781 ENSRNOG00000035658 rno-mir-193 block30169 (((....(((((..(((((((.(((..(((((.(((((..(((.((.(((..........))).)).)))..))))).)))))..))).)))))))...)))..))..))). 0.990 -50.70 # mouseZ28p1 (((.(((((..(((.((.(((..........))).)).)))..))))).))) 1.000 -18.90 # #block30169 chromosome:10:65901037:65901148:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053781|ENSRNOG00000035658 ## ENSRNOG00000035658|miRNA|rno-mir-193|rno-mir-193 [Source:miRBase;Acc:MI0000936] ## {ASMIR: rno-mir-193-as} #mouseZ28p1 chromosome:11:79525427:79525578:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083461|ENSMUSG00000065395|miRNA|mmu-mir-193 [Source:miRBase;Acc:MI0000235] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: mmu-mir-193-as} ========== block35130 (Antisense miRBase rno-mir-142-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block35130: 0.001 randfold humanZ15p1_block35130: 0.001 randfold mouseZ31p1_block35130: 0.001 #forester humanZ15p1_block35130: 1 forester mouseZ31p1_block35130: 1 #identity: 99.58 block35130 TGCTTTCTACTTTATGGGT #rat_gr977027_libT2S1 19 1 block35130 --------------------TCTCCGAAGCCCACAGTACACTCATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGTGACTGCACTGTCTGTCTGTCTGTCCACGGGGA----------------------- humanZ15p1 -------------------------------------------ATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGT------------------------------------------------------- mouseZ31p1 GGGGCCGCGGCGTGGCGTGGTCTCCGAAGCCCACAGTGCACTCATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGTGACTGCA----CTGTCTGTCTGTCCACGGGGATTCTTCAGGCCACCTGCTTTTCT *************************************************************** block35130 ..... ...........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................... ..... #ENSRNOT00000053756 ENSRNOG00000035633 rno-mir-142 block35130 <<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................................................................................... ..... #ENSRNOT00000046668 ENSRNOG00000007957 Bzrap1 block35130 ((((((..((..(((((.((.((((((((((((((((((.((((((.................)))))).)))))))))))))))))).)).)))))..))...........)))))) 0.520 -44.65 # humanZ15p1 ((((((((((((((((.((((((.................)))))).)))))))))))))))) 1.000 -26.63 # mouseZ31p1 ((((..((((.(((((.(((((((((.((...((((((((.((((((((((((((((((.((((((.................)))))).)))))))))))))))))).)))) ))))....)).....)))))))....)).)))))))))..)))) 0.941 -72.53 # #block35130 chromosome:10:76049260:76049377:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053756|ENSRNOG00000035633 ## ENSRNOG00000035633|miRNA|rno-mir-142|rno-mir-142 [Source:miRBase;Acc:MI0000915] ## {ASMIR: rno-mir-142-as} #humanZ15p1 chromosome:17:53763561:53763718:1 Opposite_strand|Boundary_non-coding|ENST00000384835|ENSG00000207567|miRNA|hsa-mir-142 [Source:miRBase;Acc:MI0000458] ## {ASMIR: hsa-mir-142-as} #mouseZ31p1 chromosome:11:87570315:87570471:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083486|ENSMUSG00000065420|miRNA|mmu-mir-142 [Source:miRBase;Acc:MI0000167] ## {ASMIR: mmu-mir-142-as} ========== block260323 (Antisense miRBase rno-mir-181a-1-as) [miRBaseNonMapped] ========== #randfold block260323: 0.183 randfold humanZ20p1_block260323: 0.008 randfold mouseZ37p1_block260323: 0.063 #forester humanZ20p1_block260323: 0.930518 forester mouseZ37p1_block260323: 1 #identity: 92.11 block260323 GGTACAATCAACGGTCGATGGT #rat_gr617968_libT2S2 22 1 block260323 AGTAGATAATGGTTAGCTATAGGGTACAATCAACGGTCGATGGTTTTTATTTGAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTGTGAGCCAGAGGTGTGCTG humanZ20p1 ------TGATGGTTAGCCATAGGGTACAATCAACGGTCGATGGTTTTGATTTTAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTCAAAACTCAGAATTC---- mouseZ37p1 ---------------GCTATAGGGTACAATCAACGGTCGATGGTTTTTATTTGAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTGTG---------------- ** ***************************** **** ********************************************* block260323 ...<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................ #ENSRNOT00000053617 ENSRNOG00000035494 rno-mir-181a-1 block260323 ((((.((..(((((.(((.(((...(((.((((((((((.((((((.............)))).)).))))..)))))).)))...))).)))........)))))...)).)))). 0.580 -30.22 # humanZ20p1 (((.((((.((..(((...(((.((((((((((.((((((.((.......)).)))).)).))))..)))))).)))...)))..)))))))))............. 0.998 -29.30 # mouseZ37p1 (((.(((...(((.((((((((((.((((((.............)))).)).))))..)))))).)))...))).)))........ 0.996 -22.32 # #block260323 chromosome:13:51132498:51132614:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053617|ENSRNOG00000035494 ## ENSRNOG00000035494|miRNA|rno-mir-181a-1|rno-mir-181a-1 [Source:miRBase;Acc:MI0000953] ## {ASMIR: rno-mir-181a-1-as} #humanZ20p1 chromosome:1:197094805:197094911:1 Opposite_strand|Boundary_non-coding|ENST00000385026|ENSG00000207759|miRNA|hsa-mir-181a-1 [Source:miRBase;Acc:MI0000289] ## {ASMIR: hsa-mir-181a-1-as} #mouseZ37p1 chromosome:1:139863028:139863113:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083631|ENSMUSG00000065565|miRNA|mmu-mir-181a-1 [Source:miRBase;Acc:MI0000697] ## {ASMIR: mmu-mir-181a-1-as} ========== block406701 (Antisense miRBase rno-mir-218-1-as) [miRBaseNonMapped_randfoldOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block406701: 0.002 randfold humanZ27p1_block406701: 0.001 randfold mouseZ45p1_block406701: 0.001 #forester humanZ27p1_block406701: 0.972877 forester mouseZ45p1_block406701: 0.94157 #identity: 97.92 block406701 CATGGTTAGATCAAGCACAAC #rat_gr313293_libT2S1 21 1 block406701 ATGGTTAGATCAAGCACAAC #rat_gr235567_libT5S2 20 1 block406701 TGTAGAAAGCTGCGTGACGTTCCATGGTGCTTGACGGAACCATGTTTTACTCATACCTCGCAAGCACATGGTTAGATCAAGCACAACAGAAAATCTCGCTACGTTATCACTACA humanZ27p1 -----------------------ATGGTGCTTGACGGAACCATGTTTTACTCATACCTCGCAACCACATGGTTAGATCAAGCACAAC--------------------------- mouseZ45p1 -----------------------ATGGTGCTTGACGGAACCATGTTTTTCTCATACCTCGCAAGCACATGGTTAGATCAAGCACAAC--------------------------- ************************* ************** *********************** block406701 ---------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000005477 ENSRNOG00000003840 Slit2 block406701 .....<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... #ENSRNOT00000053609 ENSRNOG00000035486 rno-mir-218-1 block406701 .((((..(((.(((.((..(((....((((((((...((((((((....................))))))))...))))))))....)))..)).)))...)))....)))). 1.000 -33.65 # humanZ27p1 ...((((((((...((((((((....................))))))))...))))))))... 1.000 -21.35 # mouseZ45p1 ...((((((((...((((((((.(((............))).))))))))...))))))))... 1.000 -21.70 # #block406701 chromosome:14:67642357:67642470:1 Opposite_strand|Intronic_coding|ENSRNOT00000005477|ENSRNOG00000003840 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053609|ENSRNOG00000035486 ## ENSRNOG00000035486|miRNA|rno-mir-218-1|rno-mir-218-1 [Source:miRBase;Acc:MI0000958] ## ENSRNOG00000003840|protein_coding|Slit2|Slit homolog 2 protein precursor (Slit-2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q9WVC1] ## {ASMIR: rno-mir-218-1-as} #humanZ27p1 chromosome:4:20138972:20139125:-1 Opposite_strand|Intronic_coding|ENST00000273739|ENSG00000145147|protein_coding|Slit homolog 2 protein Precursor (Slit-2) [Contains Slit homolog 2 protein N-product;Slit homolog 2 protein C-product] [Source:UniProtKB/Swiss-Prot;Acc:O94813] ## Opposite_strand|Boundary_non-coding|ENST00000384999|ENSG00000207732|miRNA|hsa-mir-218-1 [Source:miRBase;Acc:MI0000294] ## {ASMIR: hsa-mir-218-1-as} #mouseZ45p1 chromosome:5:48615157:48615310:-1 Opposite_strand|Intronic_coding|ENSMUST00000033967|ENSMUSG00000031558|protein_coding|slit homolog 2 (Drosophila) Gene [Source:MGI Symbol;Acc:MGI:1315205] ## Opposite_strand|Boundary_non-coding|ENSMUST00000083669|ENSMUSG00000065603|miRNA|mmu-mir-218-1 [Source:miRBase;Acc:MI0000700] ## {ASMIR: mmu-mir-218-1-as} ========== block445739 (Antisense miRBase rno-mir-124-1-as) [miRBaseNonMapped_lenNOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block445739: 0.017 randfold humanZ30p1_block445739: 0.021 randfold mouseZ49p1_block445739: 0.021 #forester humanZ30p1_block445739: 1 forester mouseZ49p1_block445739: 1 #identity: 100.00 block445739 CAAGGTCCGCTGTGAACAC #rat_gr271502_libT1S1 19 1 block445739 GCCCCATTCTTGGCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACACGGAGAGAGAGGCC humanZ30p1 ------------GCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACAC------------- mouseZ49p1 ------------GCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACAC------------- ********************************************************* block445739 ...<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.... #ENSRNOT00000053594 ENSRNOG00000035471 rno-mir-124-1 block445739 (((...(((((....(((((.(((..((((.(((..((....))...))).))))..))).)))))....)))))...))). 0.990 -23.80 # humanZ30p1 ...(((((.(((..((((.(((..((....))...))).))))..))).)))))... 1.000 -16.60 # mouseZ49p1 ...(((((.(((..((((.(((..((....))...))).))))..))).)))))... 1.000 -16.60 # #block445739 chromosome:15:43944537:43944618:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053594|ENSRNOG00000035471 ## ENSRNOG00000035471|miRNA|rno-mir-124-1|rno-mir-124-1 [Source:miRBase;Acc:MI0000893] ## {ASMIR: rno-mir-124-1-as} #humanZ30p1 chromosome:8:9798290:9798411:1 Opposite_strand|Boundary_non-coding|ENST00000385275|ENSG00000208010|miRNA|hsa-mir-124-1 [Source:miRBase;Acc:MI0000443] ## {Repeats: dust 0 class=dust,trf 0 class=trf,trf 0 class=trf} ## {SimpF: oe = 0.81 0 CpG,rank = 1 1 FirstEF} ## {ASMIR: hsa-mir-124-1-as} #mouseZ49p1 chromosome:14:65209475:65209596:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083663|ENSMUSG00000065597|miRNA|mmu-mir-124-1 [Source:miRBase;Acc:MI0000716] ## {Repeats: dust 0 class=dust,(TTCC)n -1 class=Simple_repeat,trf 0 class=trf} ## {ASMIR: mmu-mir-124-1-as} ========== block466802 (Antisense miRBase rno-mir-17-1-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH] ========== #randfold block466802: 0.009 #forester #identity: 0.00 block466802 ACCACTACCTGCACTGTAA #rat_gr90209_libT3S2 19 1 block466802 ggcagctgtcagcacaatgccacaagtgccttcactgcagtagatgcacacACCACTACCTGCACTGTAAgcactttgacattatcctgaccggtcg ************************************************************************************************* block466802 ............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........... #ENSRNOT00000053780 ENSRNOG00000035657 rno-mir-17-1 block466802 (((....(((((...((((.((.((((((...((.((((((((.((.......)))))).)))).))...)))))))).))))...)))))..))). 0.990 -29.40 # #block466802 chromosome:15:99853729:99853825:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053780|ENSRNOG00000035657 ## ENSRNOG00000035657|miRNA|rno-mir-17-1|rno-mir-17-1 [Source:miRBase;Acc:MI0000845] ## {ASMIR: rno-mir-17-1-as} ========== block485376 (Antisense miRBase rno-mir-208-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block485376: 0.003 randfold humanZ1p2_block485376: 0.002 randfold mouseZ1p2_block485376: 0.001 #forester humanZ1p2_block485376: 0.936228 forester mouseZ1p2_block485376: 0.974128 #identity: 96.05 block485376 ATAACCCGGGCCAAAAGCT #rat_gr205513_libT1S1 19 2 block485376 ATAACCCGGGCCAAAAGC #rat_gr205512_libT1S1 18 1 block485376 ATAACCCGGGCCAAAAGCT #rat_gr205513_libT1S2 19 1 block485376 ATAACCCGGGCCAAAAGCTCAC #rat_gr205514_libT1S1 22 1 block485376 ATAACCCGGGCCAAAAGCTCAC #rat_gr205514_libT1S2 22 1 block485376 TAACCCGGGCCAAAAGCTCAC #rat_gr716338_libT1S2 21 1 block485376 GGCTGAGAGACGATAGCTCCTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCAAAGGAAGTAAGCAAGGGTCAGCC humanZ1p2 ----------------------------ACAAGCTTTTTGCTCGTCTTATACGTGAGCATCAGGTATAACCCGGGCCAAAAGCTCGC----------------------------- mouseZ1p2 ----------------------------ACAAGCTTTTTGCTCGTCTTATACGTGAGTGTCAGGTATAACCCGGGCCAAAAGCTCAC----------------------------- ***************************** ************************** * block485376 ------------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000023302 ENSRNOG00000025757 Myh6 block485376 .....................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................... #ENSRNOT00000053706 ENSRNOG00000035583 rno-mir-208 block485376 ((((((.........((((((.((((.....(((((((.(((((..((((((.((.....)).))))))..))))).))))))).....)))).)))).)).........)))))) 0.990 -43.57 # humanZ1p2 ...(((((((.(((((..((((((.((.....)).))))))..))))).)))))))... 1.000 -24.30 # mouseZ1p2 ...(((((((.(((((..((((((.((.....)).))))))..))))).)))))))... 1.000 -24.30 # #block485376 chromosome:15:33051941:33052056:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053706|ENSRNOG00000035583 ## Opposite_strand|Intronic_coding|ENSRNOT00000023302|ENSRNOG00000025757 ## ENSRNOG00000025757|protein_coding|Myh6|Myosin-6 (Myosin heavy chain 6) (Myosin heavy chain, cardiac muscle alpha isoform) (MyHC-alpha). [Source:UniProtKB/Swiss-Prot;Acc:P02563] ## ENSRNOG00000035583|miRNA|rno-mir-208|rno-mir-208 [Source:miRBase;Acc:MI0000949] ## {ASMIR: rno-mir-208-as} #humanZ1p2 chromosome:14:22927603:22927758:1 Opposite_strand|Intronic_coding|ENST00000356287|ENSG00000197616|protein_coding|Myosin-6 (Myosin heavy chain 6)(Myosin heavy chain, cardiac muscle alpha isoform)(MyHC-alpha) [Source:UniProtKB/Swiss-Prot;Acc:P13533] ## Opposite_strand|Boundary_non-coding|ENST00000362287|ENSG00000199157|miRNA|hsa-mir-208a [Source:miRBase;Acc:MI0000251] ## {ASMIR: hsa-mir-208a-as} #mouseZ1p2 chromosome:14:55567861:55568016:1 Opposite_strand|Boundary_non-coding|ENSMUST00000111456|ENSMUSG00000040752|protein_coding|myosin, heavy polypeptide 6, cardiac muscle, alpha Gene [Source:MGI (curated);Acc:Myh6-002] ## Opposite_strand|Intronic_coding|ENSMUST00000081857|ENSMUSG00000040752|protein_coding|myosin, heavy polypeptide 6, cardiac muscle, alpha Gene [Source:MGI (curated);Acc:Myh6-002] ## {ASMIR: mmu-mir-208a-as} ========== block604559 (Antisense miRBase rno-let-7a-1-as) [miRBaseNonMapped_lenNOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block604559: 0.624 #forester #identity: 0.00 block604559 GTAGATTGTATAGTTATCT #rat_gr629735_libT1S1 19 1 block604559 tagttcttggtttcctactagatccacgaatgcagacttttccatcaccttaggaaagacaGTAGATTGTATAGTTATCTcccagtggtgggtgtgaccctaaaacta ************************************************************************************************************ block604559 ................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #ENSRNOT00000053755 ENSRNOG00000035632 rno-let-7a-1 block604559 (((((...((((.((((((((((..((..(((((.((((((((.........)))))...)))....))))).)).))))......))))))...))))....))))) 0.680 -20.80 # #block604559 chromosome:17:22119796:22119903:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053755|ENSRNOG00000035632 ## ENSRNOG00000035632|miRNA|rno-let-7a-1|rno-let-7a-1 [Source:miRBase;Acc:MI0000827] ## {ASMIR: rno-let-7a-1-as} ========== block604560 (Antisense miRBase rno-let-7f-1-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block604560: 0.001 randfold humanZ6p2_block604560: 0.001 randfold mouseZ6p2_block604560: 0.001 #forester humanZ6p2_block604560: 0.373655 forester mouseZ6p2_block604560: 1 #identity: 81.11 block604560 CTATACAATCTACTACCTCAC #rat_gr414394_libT2S2 21 1 block604560 CTATACAATCTACTACCT #rat_gr414393_libT4S2 18 1 block604560 ACTCCTCAGGGAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCACTCTGATAGAG humanZ6p2 -------GGATGAGGTAGTAGGTTGTATAGTTTT---------AGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCC--------- mouseZ6p2 ----------GAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCAC---------- *** * *** ********** * ***** * * **** * **************** ** * block604560 .........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... #ENSRNOT00000053661 ENSRNOG00000035538 rno-let-7f-1 block604560 .(((.((((((.(((...((((((((((((((............(((((. ......)))))...))))))))))))))...)))..))))))..))) 0.900 -30.76 # humanZ6p2 (((.(((..((((((((((((((((.. ...(((...((((....)))).)))))))))))))))))))..)))))) 0.201 -32.20 # mouseZ6p2 ((.((...((((((((((((((............(((((. ......)))))...))))))))))))))...)))).. 0.900 -22.06 # #block604560 chromosome:17:22120131:22120227:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053661|ENSRNOG00000035538 ## ENSRNOG00000035538|miRNA|rno-let-7f-1|rno-let-7f-1 [Source:miRBase;Acc:MI0000833] ## {ASMIR: rno-let-7f-1-as} #humanZ6p2 chromosome:9:95978030:95978166:1 Same_strand|Boundary_non-coding|ENST00000362295|ENSG00000199165|miRNA|hsa-let-7a-1 [Source:miRBase;Acc:MI0000060] ## {MIR: hsa-let-7a-1} #mouseZ6p2 chromosome:13:48633174:48633310:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083583|ENSMUSG00000065517|miRNA|mmu-let-7f-1 [Source:miRBase;Acc:MI0000562] ## {ASMIR: mmu-let-7f-1-as} ========== block711636 (Antisense miRBase rno-mir-122-as) [miRBaseNonMapped_randfoldOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block711636: 0.001 randfold humanZ10p2_block711636: 0.001 randfold mouseZ12p2_block711636: 0.001 #forester humanZ10p2_block711636: 0.862227 forester mouseZ12p2_block711636: 0.907379 #identity: 92.17 block711636 AACACCATTGTCACACTCCA #rat_gr26109_libT3S1 20 2 block711636 ------------GTAGACGGATAGCCTAGCAGTAGCTGTTTAGTGTGATGATGGCGTTTGATGTTTTGGACACAAACACCATTGTCACACTCCAGAGCTCTGCTAAGGAGAGTCTGT-AGGC----------- humanZ10p2 GACATTTATCGAG-GGAAGGATTGCCTAGCAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAACTCTGT-AGCCACGAAGGTGTT mouseZ12p2 -------GTGGAGTGGACGGATTGCCTAGCAGTAGCTATTTAGTGTGATAATGGCGTTTGATGGTTTGGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAAGTCTGTCAGGCAC--------- * ** **** ************** *********** ************ *** ************************** ************** * ***** ** * block711636 ----- --------------------------------------------------------------------------------------------------------- ---- ----- #ENSRNOT00000045098 ENSRNOG00000030321 LOC502176 block711636 ..... ...........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... .... ..... #ENSRNOT00000053725 ENSRNOG00000035602 rno-mir-122 block711636 ((..((((((..((((((((.((((....(((((((..((((.(((((.((((...))))))))).))))..)))))))....)))))))))).))...)))))) ..)) 1.000 -50.90 # humanZ10p2 (((((((.(((.. ((.((..((.((((((((.((((....(((((((((((((.(((((...((....)).))))).)))))))))))))....)))))))))).)).))..)).. ..)).)))))))))) 0.998 -51.60 # mouseZ12p2 .....((.(((((((..((((((((.((((....(((((((((((((.(((((.((.......))))))).)))))))))))))....)))))))))).))...)))))))..)).. 1.000 -54.30 # #block711636 chromosome:18:61512734:61512842:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053725|ENSRNOG00000035602 ## Opposite_strand|Intronic_coding|ENSRNOT00000045098|ENSRNOG00000030321 ## ENSRNOG00000030321|protein_coding|LOC502176|Ab1-331. [Source:UniProtKB/TrEMBL;Acc:Q7TP86] ## ENSRNOG00000035602|miRNA|rno-mir-122|rno-mir-122 [Source:miRBase;Acc:MI0000891] ## {ASMIR: rno-mir-122-as} #humanZ10p2 chromosome:18:54269262:54269392:-1 Opposite_strand|Boundary_non-coding|ENST00000385044|ENSG00000207778|miRNA|hsa-mir-122 [Source:miRBase;Acc:MI0000442] ## {ASMIR: hsa-mir-122-as} #mouseZ12p2 chromosome:18:65408490:65408606:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083468|ENSMUSG00000065402|miRNA|mmu-mir-122 [Source:miRBase;Acc:MI0000256] ## {ASMIR: mmu-mir-122-as} ========== block724673 (Antisense miRBase rno-mir-1-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block724673: 0.003 #forester #identity: 0.00 block724673 AATACACACTTCTTTACAT #rat_gr58645_libT4S1 19 1 block724673 TACACACTTCTTTACATTCCATA #rat_gr741513_libT1S1 23 1 block724673 ttggcggacattacctacccaaAATACACACTTCTTTACATTCCATAgcattctatgttcatatgggtacataaagaagtatgtgctctgagtaggcactattgtgccgat *************************************************************************************************************** block724673 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000018025 ENSRNOG00000013281 NP_001100875.1 block724673 ................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................. #ENSRNOT00000053646 ENSRNOG00000035523 rno-mir-1 block724673 (((((..(((.(((((((.((...((((.(((((((((...((((((((((...))))...))))))....))))))))).))))...)).)))))...)).)))))))). 0.930 -31.80 # #block724673 chromosome:18:2191660:2191770:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053646|ENSRNOG00000035523 ## Same_strand|Intronic_coding|ENSRNOT00000018025|ENSRNOG00000013281 ## ENSRNOG00000035523|miRNA|rno-mir-1|rno-mir-1 [Source:miRBase;Acc:MI0003489] ## ENSRNOG00000013281|protein_coding|NP_001100875.1|mindbomb homolog 1 [Source:RefSeq_peptide;Acc:NP_001100875] ## {ASMIR: rno-mir-1-as} ========== block750146 (Antisense miRBase rno-mir-145-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_bulgeHIGH] ========== #randfold block750146: 0.001 randfold humanZ17p2_block750146: 0.002 randfold mouseZ18p2_block750146: 0.001 #forester humanZ17p2_block750146: 0.796774 forester mouseZ18p2_block750146: 0.86657 #identity: 96.52 block750146 AAGGGATTCCTGGGAAAACTGGACC #rat_gr52054_libT5S2 25 1 block750146 -----------------AGGCAGATCCAGCTGTTAAGCCATGACCTCAAGAACAGTATTTCCAGGAATCCCCATCTTAGCATCCAAGGGATTCCTGGGAAAACTGGACCGTGAGGACAAGGTGGGAGAGAGATGCCT------------------- humanZ17p2 ACTGTGGGGTGGGAAGGAGGCAAATCCAGCTGTGAAACCATGACCTCAAGAACAGTATTTCCAGGAATCCCCATCTTAGCATCTAAGGGATTCCTGGGAAAACTGGACCGTGAGGACAAGGTGGGAGCGAGTGGCCTTCAGCGCCAAGGCCGCCGT mouseZ18p2 ---------------------------------------------------ACAGTATTTCCAGGAATCCCCATCTTAGCATCCAAGGGATTCCTGGGAAAACTGG-------------------------------------------------- ******************************** ********************** block750146 ..... ..................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............. ..... #ENSRNOT00000053597 ENSRNOG00000035474 rno-mir-145 block750146 (((((.......((.((..(((.((.(((((....((((.((((((((((((((...............)))))))))))))).)))).....))))).)).)))..)).))...))))) 0.990 -51.66 # humanZ17p2 ....((((((.((..((((((...((..(((.....(((.((.(((((....((((.((((((((((((((....((((...)))))))))))))))))).)))).....))))).)).)))...)))))...))))))....))...))).))). 0.860 -63.30 # mouseZ18p2 .((((.((((((((((((((...............)))))))))))))).)))). 1.000 -28.46 # #block750146 chromosome:18:57623729:57623848:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053597|ENSRNOG00000035474 ## ENSRNOG00000035474|miRNA|rno-mir-145|rno-mir-145 [Source:miRBase;Acc:MI0000918] ## {ASMIR: rno-mir-145-as} #humanZ17p2 chromosome:5:148790369:148790524:-1 Opposite_strand|Boundary_non-coding|ENST00000384967|ENSG00000207700|miRNA|hsa-mir-145 [Source:miRBase;Acc:MI0000461] ## {ASMIR: hsa-mir-145-as} #mouseZ18p2 chromosome:18:61807432:61807591:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083658|ENSMUSG00000065592|miRNA|mmu-mir-145 [Source:miRBase;Acc:MI0000169] ## {ASMIR: mmu-mir-145-as} ========== block804731 (Antisense miRBase rno-mir-24-2-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block804731: 0.001 randfold humanZ18p2_block804731: 0.002 randfold mouseZ19p2_block804731: 0.003 #forester humanZ18p2_block804731: 0.788438 forester mouseZ19p2_block804731: 0.975275 #identity: 91.59 block804731 TGTTCCTGCTGAACTGAGCCA #rat_gr1092178_libT3S1 21 1 block804731 TGTTCCTGCTGAACTGAGCCA #rat_gr1092178_libT5S2 21 1 block804731 TCCTGCTGAACTGAGCCAG #rat_gr877303_libT3S1 19 1 block804731 --------TTGCCAGCTCCTATGGGGGCTGGACTCCTGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACAGGAGGCGGAGCCCAGGGAG---AGGCAG--------- humanZ18p2 GGCAGGGGCTGCAGGCTCC-AAGGGGGCTTGACCCCTGTTCCTGCTGAACTGAGCCAGTGTACACAAACCAACTGTGTTTCAGCTCAGTAGGCACGGGAGGCAGAGCCCAGGGAGGCCAGGCAGCAGGATGGC mouseZ19p2 ------------------------------------TGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACG------------------------------------- ************************ ** ** **** ******************** block804731 ..... .<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<.. ..... #ENSRNOT00000053624 ENSRNOG00000035501 rno-mir-24-2 block804731 .((((..(((((.((((..(((..(((((((.((((((((.((((..((((............)) ))..)))).)))))))).))))))).)))..))))))))) .)))). 1.000 -60.20 # humanZ18p2 ..((...(((((.(((((( ....((((((..(((((((.((((((((.((((((((((............)))).))).))).)))))))).))))).))..))))))..)))).))..)))))....)).. 1.000 -65.90 # mouseZ19p2 .((.((((((((.((((..((((............)) ))..)))).)))))))).)). 0.999 -24.40 # #block804731 chromosome:19:25638429:25638539:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053624|ENSRNOG00000035501 ## ENSRNOG00000035501|miRNA|rno-mir-24-2|rno-mir-24-2 [Source:miRBase;Acc:MI0000855] ## {ASMIR: rno-mir-24-2-as} #humanZ18p2 chromosome:19:13808069:13808200:1 Opposite_strand|Boundary_non-coding|ENST00000386972|ENSG00000209707|miRNA|hsa-mir-24-2 [Source:miRBase;Acc:MI0000081] ## {Repeats: dust 0 class=dust} ## {ASMIR: hsa-mir-24-2-as} #mouseZ19p2 chromosome:8:86732692:86732842:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083607|ENSMUSG00000065541|miRNA|mmu-mir-24-2 [Source:miRBase;Acc:MI0000572] ## {ASMIR: mmu-mir-24-2-as} ========== block867763 (Antisense miRBase rno-mir-150-as) [miRBaseNonMapped_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH] ========== #randfold block867763: 0.037 #forester #identity: 0.00 block867763 AGGGTCTGAGGCACAGCAC #rat_gr188979_libT1S2 19 1 block867763 GTACCAGGGTCTGAGGCACAGCAC #rat_gr628638_libT3S2 24 1 block867763 cccaagtccctgtcccccaggcctGTACCAGGGTCTGAGGCACAGCACtggtacaaggg *********************************************************** block867763 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000027992 ENSRNOG00000020623 LOC361571 block867763 ..<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #ENSRNOT00000053683 ENSRNOG00000035560 rno-mir-150 block867763 (((..((((((((.((.(((((((......))))))).)).))))....)).))..))) 0.910 -23.10 # #block867763 chromosome:1:95596100:95596158:-1 Same_strand|Boundary_non-coding|ENSRNOT00000056286|ENSRNOG00000020623 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053683|ENSRNOG00000035560 ## Same_strand|Intronic_non-coding|ENSRNOT00000027992|ENSRNOG00000020623 ## ENSRNOG00000035560|miRNA|rno-mir-150|rno-mir-150 [Source:miRBase;Acc:MI0000920] ## ENSRNOG00000020623|protein_coding|LOC361571|Aldehyde dehydrogenase family 16 member A1. [Source:UniProtKB/Swiss-Prot;Acc:Q3T1L0] ## {ASMIR: rno-mir-150-as} ========== block914513 (Antisense miRBase rno-mir-192-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block914513: 0.001 randfold humanZ22p2_block914513: 0.001 randfold mouseZ26p2_block914513: 0.001 #forester humanZ22p2_block914513: 0.791182 forester mouseZ26p2_block914513: 0.801016 #identity: 93.80 block914513 CTGTCAATTCATAGGTCA #rat_gr453984_libT5S2 18 1 block914513 -----GGCTGGCATTGAGGCGAACATACCTGTGACCTATGGAACTGGCAGCCAGAGGCGAGATCAGAGTACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGCACTCCATCTTGACAGCCT------ humanZ22p2 --------------------------------GACCTATGGAATTGGCAGCCAGAGGGGAGACGAGAGCACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGC------------------------ mouseZ26p2 GTTATGGCTGGCATTGAGGTGAACATACCTGTGACCTATGGAATTGGCAGCCAGAGGAGAGAAAAGAGTACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGCACGCCATCTTGGCAGCCTGCTGAC *********** ************* **** **** ********************************** block914513 ----- -----------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<< #ENSRNOT00000054830 ENSRNOG00000021028 Ehd1 block914513 ..... .<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..... ..... #ENSRNOT00000053653 ENSRNOG00000035530 rno-mir-192 block914513 (((((.((..(((((..(((...((.(((((((((((..((((((((((..((.........)).)))))))))).))))))))))).))...))))).))).....)).))))). 1.000 -51.10 # humanZ22p2 (((((((.((((((((((((((................)))))))))))))))))))))............ 0.860 -32.99 # mouseZ26p2 ((((.(((((.((..((((((..((((.((.((((((((.((((((((((((((................)))))))))))))))))))))).))...))))..)))).)).)).)))))...)))) 0.998 -58.59 # #block914513 chromosome:1:209040251:209040366:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000028547|ENSRNOG00000021028 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053653|ENSRNOG00000035530 ## ENSRNOG00000021028|protein_coding|Ehd1|EH domain-containing protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q641Z6] ## ENSRNOG00000035530|miRNA|rno-mir-192|rno-mir-192 [Source:miRBase;Acc:MI0000935] ## {ASMIR: rno-mir-192-as} #humanZ22p2 chromosome:11:64415211:64415281:1 Opposite_strand|Exonic_non-coding|ENST00000384915|ENSG00000207648|miRNA|hsa-mir-192 [Source:miRBase;Acc:MI0000234] ## {ASMIR: hsa-mir-192-as} #mouseZ26p2 chromosome:19:6264823:6264949:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083589|ENSMUSG00000065523|miRNA|mmu-mir-192 [Source:miRBase;Acc:MI0000551] ## {ASMIR: mmu-mir-192-as} ========== block969944 (Antisense miRBase rno-mir-292-as) [miRBaseNonMapped_lenNOK] ========== #randfold block969944: 0.179 randfold humanZ23p2_block969944: 0.001 randfold mouseZ27p2_block969944: 0.001 #forester humanZ23p2_block969944: 0.556841 forester mouseZ27p2_block969944: 0.760632 #identity: 78.01 block969944 ACACTCAAAACCTGGCGGC #rat_gr75246_libT5S2 19 1 block969944 ------TTTGCAGCAG---------TTCTCAATCGGTAACACTCAAAACCTGGCGGCACTTTTCTTCCAAAGAAAACCCAAAAGAGCCCC--CAGTTTGAGTATCACAGGTTGGACGTCAAGGGTTAATGCGGGA- humanZ23p2 GGTATCTTCTCCGCAGG-TTGAGTCTTCTCAAGCGGTAACACTCAAAAGATGGCGGCACTTT-----CACCAGAGAGCAGAAAGTGCCCCCACAGTTTGAGTGCCACAGGCT-GAGGGGATGCGGCAAGGCGGCGA mouseZ27p2 -----GTTCTTAGCCGTTTTGAG--TTCTCAACCGGTGACACTCAAAACCTGGCGGCACTTTTCTTCCGATGAAAATCCAAAAGAGCCCC--CAGTTTGAGTATCACAGGCTGGAGGTCAAGCTTAAGAAC----- ** ** * ******* **** ********** ************ * * * * **** ***** ********** ****** * ** * * * * * block969944 ..... .......... ....<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<...................... ..... #ENSRNOT00000053618 ENSRNOG00000035495 rno-mir-292 block969944 ((((((..(( ..(((((((.((...(((((((..((((.(((.(((((.(((....))).....))))).))).) ))))))))))...)).))))).......))..))..)))))). 0.990 -30.41 # humanZ23p2 .......((.((((..( (((.(((..(((.(((.((..((((((((...(((.(((((((( (...........))))))))).)))...))))))))..))..))) )))..))).))))...)))).)) 0.994 -57.60 # mouseZ27p2 (((((((((....((((. (((.((.((.((((.(((((((..((((.(((.(((((.....(((....))).))))).))).) )))))))))).)))).)).))))).))))))).)))))) 0.999 -46.10 # #block969944 chromosome:1:64274326:64274443:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053618|ENSRNOG00000035495 ## ENSRNOG00000035495|miRNA|rno-mir-292|rno-mir-292 [Source:miRBase;Acc:MI0000966] ## {ASMIR: rno-mir-292-as} #humanZ23p2 chromosome:19:58982713:58982841:-1 Opposite_strand|Boundary_non-coding|ENST00000362161|ENSG00000199031|miRNA|hsa-mir-371 [Source:miRBase;Acc:MI0000779] ## {ASMIR: hsa-mir-371-as} #mouseZ27p2 chromosome:7:3219172:3219293:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000104847|ENSMUSG00000078041|miRNA|mmu-mir-292 [Source:miRBase;Acc:MI0000390] ## {ASMIR: mmu-mir-292-as} ========== block1142354 (Antisense miRBase rno-mir-449a-as) [miRBaseNonMapped_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block1142354: 0.001 randfold mouseZ31p2_block1142354: 0.001 #forester mouseZ31p2_block1142354: 0.920982 #identity: 93.55 block1142354 AGAGCAGTTGCATGTTAGC #rat_gr142911_libT5S1 19 1 block1142354 GCTGTTGATTGTATGTGCAATAGGAGAGCAGTTGCATGTTAGCTGGTGCCTTTTACATACTCAACCAGCTAACAATACACTGCCAACCCATCGCACACAGC mouseZ31p2 ------------------------AGAGCAGTCGCATGTTAGCTGGTGCCGCTCACATACTCAACCAGCTAACAATACACTGCCAA--------------- ******** ***************** * ******************************** block1142354 ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...... #ENSRNOT00000053745 ENSRNOG00000035622 rno-mir-449a block1142354 (((((.........((((.((.((...(((((....(((((((((((................)))))))))))....)))))...)).)).))))))))) 0.970 -34.59 # mouseZ31p2 ...(((((....(((((((((((................)))))))))))....)))))... 1.000 -23.19 # #block1142354 chromosome:2:44418272:44418372:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053745|ENSRNOG00000035622 ## ENSRNOG00000035622|miRNA|rno-mir-449a|rno-mir-449a [Source:miRBase;Acc:MI0001650] ## {ASMIR: rno-mir-449a-as} #mouseZ31p2 chromosome:13:113827721:113827861:-1 Opposite_strand|Intronic_coding|ENSMUST00000109244|ENSMUSG00000078926|protein_coding| ## Opposite_strand|Boundary_non-coding|ENSMUST00000083641|ENSMUSG00000065575|miRNA|mmu-mir-449a [Source:miRBase;Acc:MI0001649] ## {ASMIR: mmu-mir-449a-as} ========== block1165948 (Antisense miRBase rno-mir-124-2-as) [miRBaseNonMapped_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH] ========== #randfold block1165948: 0.001 randfold humanZ26p2_block1165948: 0.006 randfold mouseZ32p2_block1165948: 0.003 #forester humanZ26p2_block1165948: 1 forester mouseZ32p2_block1165948: 1 #identity: 97.89 block1165948 CAAGGTCCGCTGTGAACAC #rat_gr271502_libT1S1 19 1 block1165948 --------------------TCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGTCTCTGATCTTGAT-------------- humanZ26p2 CTGAGATGCTTTGGTGTCCTTCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGCCTCTAATCTTGATCCGGAAAGTATAAG mouseZ32p2 --------------------TCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGTCTCTGATCTTGATCTAGAAG------- ********************************************************************************************** **** ******** block1165948 ....< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< ..... #ENSRNOT00000053622 ENSRNOG00000035499 rno-mir-124-2 block1165948 (((((..(((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).)))))))))..))))). 1.000 -40.90 # humanZ26p2 .....((((((.....(((.(((((...((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).))))))))...)))))...)))))))))... 0.849 -46.50 # mouseZ32p2 (((((..(((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).)))))))))..)))))........ 0.998 -40.90 # #block1165948 chromosome:2:102699466:102699573:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053622|ENSRNOG00000035499 ## ENSRNOG00000035499|miRNA|rno-mir-124-2|rno-mir-124-2 [Source:miRBase;Acc:MI0000894] ## {ASMIR: rno-mir-124-2-as} #humanZ26p2 chromosome:8:65454246:65454387:-1 Opposite_strand|Boundary_non-coding|ENST00000385081|ENSG00000207816|miRNA|hsa-mir-124-2 [Source:miRBase;Acc:MI0000444] ## {ASMIR: hsa-mir-124-2-as} #mouseZ32p2 chromosome:3:17695655:17695769:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083624|ENSMUSG00000065558|miRNA|mmu-mir-124-2 [Source:miRBase;Acc:MI0000717] ## {ASMIR: mmu-mir-124-2-as} ========== block1431101 (Antisense miRBase rno-mir-124-3-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block1431101: 0.001 randfold humanZ29p2_block1431101: 0.007 randfold mouseZ36p2_block1431101: 0.001 #forester humanZ29p2_block1431101: 1 forester mouseZ36p2_block1431101: 1 #identity: 99.63 block1431101 CAAGGTCCGCTGTGAACAC #rat_gr271502_libT1S1 19 1 block1431101 GCGGCGGAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTCAGGGCTGCG-- humanZ29p2 -CGGCGGAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTCAGGGCTGGGGC mouseZ36p2 ------GAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTC----------- ************************************************************************************* block1431101 ..........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........ ..... #ENSRNOT00000053716 ENSRNOG00000035593 rno-mir-124-3 block1431101 (((((.((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).))))))))))))...))))). 1.000 -47.80 # humanZ29p2 ((((.((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).))))))))))))...)))).... 1.000 -44.00 # mouseZ36p2 ((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).)))))))))))) 1.000 -37.40 # #block1431101 chromosome:3:170004563:170004662:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053716|ENSRNOG00000035593 ## ENSRNOG00000035593|miRNA|rno-mir-124-3|rno-mir-124-3 [Source:miRBase;Acc:MI0000892] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: rno-mir-124-3-as} #humanZ29p2 chromosome:20:61280287:61280387:-1 Opposite_strand|Boundary_non-coding|ENST00000384866|ENSG00000207598|miRNA|hsa-mir-124-3 [Source:miRBase;Acc:MI0000445] ## {SimpF: oe = 0.82 0 CpG,rank = 5 -1 FirstEF,rank = 9 -1 FirstEF} ## {ASMIR: hsa-mir-124-3-as} #mouseZ36p2 chromosome:2:180628737:180628821:-1 Opposite_strand|Exonic_non-coding|ENSMUST00000083520|ENSMUSG00000065454|miRNA|mmu-mir-124-3 [Source:miRBase;Acc:MI0000150] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: mmu-mir-124-3-as} ========== block1471184 (Antisense miRBase rno-mir-129-2-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block1471184: 0.002 randfold humanZ30p2_block1471184: 0.001 randfold mouseZ42p2_block1471184: 0.007 #forester humanZ30p2_block1471184: 1 forester mouseZ42p2_block1471184: 1 #identity: 99.52 block1471184 CAAGCCCAGACCGCAAAAAG #rat_gr269355_libT1S1 20 1 block1471184 AAGCCCAGACCGCAAAAAG #rat_gr46360_libT1S1 19 1 block1471184 GCCGAGCGCGCCCTCCGCGAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCGCGAAGGGCAGTCTACCCGCTTCTTCGGT humanZ30p2 ---------GCCCTCCGCAAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCGCGAAGGGC-------------------- mouseZ42p2 -----------------------CTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAG--------------------------------- ************************************************************* block1471184 ..........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................... #ENSRNOT00000053665 ENSRNOG00000035542 rno-mir-129-2 block1471184 ((((((((.(((((.(((((((.(((((((.(((..((((((...(((..............)))))))))..))).)))))))))))))).)))))........)))....))))) 0.530 -50.84 # humanZ30p2 (((((.(((.(((.(((((((.(((..((((((...(((..............)))))))))..))).)))))))))).))).))))) 0.976 -38.54 # mouseZ42p2 (((((((.(((..((((((...(((..............)))))))))..))).))))))) 0.976 -22.24 # #block1471184 chromosome:3:78648926:78649042:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053665|ENSRNOG00000035542 ## ENSRNOG00000035542|miRNA|rno-mir-129-2|rno-mir-129-2 [Source:miRBase;Acc:MI0000637] ## {ASMIR: rno-mir-129-2-as} #humanZ30p2 chromosome:11:43559521:43559608:-1 Opposite_strand|Exonic_non-coding|ENST00000362207|ENSG00000199077|miRNA|hsa-mir-129-2 [Source:miRBase;Acc:MI0000473] ## {SimpF: oe = 0.98 0 CpG} ## {ASMIR: hsa-mir-129-2-as} #mouseZ42p2 chromosome:2:94081493:94081649:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083577|ENSMUSG00000065511|miRNA|mmu-mir-129-2 [Source:miRBase;Acc:MI0000585] ## {Repeats: trf 0 class=trf,dust 0 class=dust,(CCG)n 1 class=Simple_repeat} ## {SimpF: oe = 1.06 1 CpG, 1 Eponine} ## {ASMIR: mmu-mir-129-2-as} ========== block1543605 (Antisense miRBase rno-mir-129-1-as) [miRBaseNonMapped_lenNOK] ========== #randfold block1543605: 0.016 randfold humanZ1p3_block1543605: 0.001 randfold mouseZ1p3_block1543605: 0.003 #forester humanZ1p3_block1543605: 0.962023 forester mouseZ1p3_block1543605: 0.778232 #identity: 97.26 block1543605 AAGCCCAGACCGCAAAAAG #rat_gr46360_libT1S1 19 1 block1543605 CAAGCCCAGACCGCAAAAAG #rat_gr269355_libT1S1 20 1 block1543605 -----------------AGCCTCCCGCAGATACTTTTTGGGGTAAGGGCTTCCTGACTACTGTGGAGA-GAACAGCAAGCCCAGACCGCAAAAAGACCCAAAGGAGACAGCTG-------------------- humanZ1p3 GCCTCCCCTGTGGACAAGGCCTCCCGCAGATACTTTTTGGGGTAAGGGCTTCCTGACTACTGTTGAGAGGAACAGCAAGCCCAGACCGCAAAAAGATCCAAAGGAGACAGCAGCCATCCCATGGCAGGGGGGC mouseZ1p3 --------------------------------CTTTTTGGGGTAAGGGCTTCCTGACTACTGTCGAGA-GAACAGCAAGCCCAGACCGCAAAAAG-------------------------------------- ******************************* **** ************************** block1543605 ..... ..........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............. ..... #ENSRNOT00000053721 ENSRNOG00000035598 rno-mir-129-1 block1543605 (((((((........(((((((.(((..((((((.(((.((.((....))) )..))).))))))..))).))))))).......))))...))). 0.990 -32.46 # humanZ1p3 (((.((((((((((...(((((((....(((.(((((((.(((..((((((.(((.((.((....))))...))).))))))..))).))))))))))....))))......))).)))....)))))))))) 0.963 -57.30 # mouseZ1p3 (((((((.(((..((((((.(((.......((.... )).))).))))))..))).))))))) 1.000 -26.20 # #block1543605 chromosome:4:55892149:55892243:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053721|ENSRNOG00000035598 ## ENSRNOG00000035598|miRNA|rno-mir-129-1|rno-mir-129-1 [Source:miRBase;Acc:MI0000902] ## {ASMIR: rno-mir-129-1-as} #humanZ1p3 chromosome:7:127635127:127635259:-1 Opposite_strand|Boundary_non-coding|ENST00000384972|ENSG00000207705|miRNA|hsa-mir-129-1 [Source:miRBase;Acc:MI0000252] ## {ASMIR: hsa-mir-129-1-as} #mouseZ1p3 chromosome:6:28972586:28972720:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083535|ENSMUSG00000065469|miRNA|mmu-mir-129-1 [Source:miRBase;Acc:MI0000222] ## {ASMIR: mmu-mir-129-1-as} ========== block1641810 (Antisense miRBase rno-mir-29a-as) [miRBaseNonMapped_lenNOK] ========== #randfold block1641810: 0.094 randfold humanZ6p3_block1641810: 0.015 randfold mouseZ10p3_block1641810: 0.016 #forester humanZ6p3_block1641810: 0.94136 forester mouseZ10p3_block1641810: 1 #identity: 98.89 block1641810 AACCGATTTCAGATGGTGCT #rat_gr33962_libT4S2 20 1 block1641810 AACCGATTTCAGATGGTGCTA #rat_gr33963_libT5S1 21 1 block1641810 CGATTTCAGATGGTGCTA #rat_gr391401_libT5S1 18 1 block1641810 GCATGGTGCTTTTCCCCAATCATTATAACCGATTTCAGATGGTGCTAGAAAATTCTATTGACTCTGAACACCAAAAGAAATCAGTCATCCTCTAAGGGGTCACAAGAGGTCATGTGCA humanZ6p3 --------------------------AACCGATTTCAGATGGTGCTAGAAAATTATATTGACTCTGAACACCAAAAGAAATCAGTC-------------------------------- mouseZ10p3 --------------------------AACCGATTTCAGATGGTGCTAGAAAATTCTATTGACTCTGAACACCAAAAGAAATCAGTC-------------------------------- **************************** ******************************* block1641810 .................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................... #ENSRNOT00000053581 ENSRNOG00000035458 rno-mir-29a block1641810 (((((..((((((((((..........((.((((((...(((((.((((....((....)).))))..)))))...)))))).))..........)))).....))))))..))))). 0.820 -27.65 # humanZ6p3 ....((((((...(((((.((((.............))))..)))))...)))))).... 1.000 -12.82 # mouseZ10p3 ....((((((...(((((.((((....((....)).))))..)))))...)))))).... 0.997 -13.20 # #block1641810 chromosome:4:58107748:58107865:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053581|ENSRNOG00000035458 ## ENSRNOG00000035458|miRNA|rno-mir-29a|rno-mir-29a [Source:miRBase;Acc:MI0000863] ## {ASMIR: rno-mir-29a-as} #humanZ6p3 chromosome:7:130211966:130212123:1 Opposite_strand|Boundary_non-coding|ENST00000362111|ENSG00000198981|miRNA|hsa-mir-29a [Source:miRBase;Acc:MI0000087] ## {ASMIR: hsa-mir-29a-as} #mouseZ10p3 chromosome:6:31012628:31012785:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083676|ENSMUSG00000065610|miRNA|mmu-mir-29a [Source:miRBase;Acc:MI0000576] ## {ASMIR: mmu-mir-29a-as} ========== block1641811 (Antisense miRBase rno-mir-29b-1-as) [miRBaseNonMapped_nonpairedHIGH] ========== #randfold block1641811: 0.133 #forester #identity: 0.00 block1641811 AACACTGATTTCAAATGGTGC #rat_gr26543_libT1S1 21 1 block1641811 ttgtgtggtcggcagcgaagttgttctccaccaagAACACTGATTTCAAATGGTGCtagacaa *************************************************************** block1641811 ................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #ENSRNOT00000053586 ENSRNOG00000035463 rno-mir-29b-1 block1641811 .(((.(((.((.((..(((((((((((......))))))...)))))...)).))))).))). 0.980 -16.10 # #block1641811 chromosome:4:58108112:58108174:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053586|ENSRNOG00000035463 ## ENSRNOG00000035463|miRNA|rno-mir-29b-1|rno-mir-29b-1 [Source:miRBase;Acc:MI0000864] ## {ASMIR: rno-mir-29b-1-as} ========== block1693829 (Antisense miRBase rno-mir-141-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block1693829: 0.001 randfold humanZ8p3_block1693829: 0.001 randfold mouseZ13p3_block1693829: 0.001 #forester humanZ8p3_block1693829: 0.823197 forester mouseZ13p3_block1693829: 0.945763 #identity: 92.41 block1693829 CAACACTGCACTGGAAGATG #rat_gr263582_libT4S2 20 2 block1693829 CAACACTGCACTGGAAGATGGAC #rat_gr263583_libT3S2 23 2 block1693829 CAACACTGCACTGGAAGA #rat_gr263581_libT1S2 18 1 block1693829 CAACACTGCACTGGAAGA #rat_gr263581_libT2S1 18 1 block1693829 CAACACTGCACTGGAAGA #rat_gr263581_libT3S1 18 1 block1693829 GGAACTGACCCGGGGGCCATCTTTACCAGACAGTGTTAGGAGCTTCGTACTTCAACCATCCAACACTGCACTGGAAGATGGACTCAGAGTCAGCCA humanZ8p3 ----------------CCATCTTTACCAGACAGTGTTAGGAGCTTCACAATTAGACCATCCAACACTGTACTGGAAGATGGACCCAGGG------- mouseZ13p3 ------------GGGGCCATCTTTACCAGACAGTGTTAGGAGCTTCATACTTCAACCATCCAACACTGCACTGGAAGATGGACCCAGAGC------ ****************************** * ** ************** ************** *** * block1693829 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000056049 ENSRNOG00000037145 block1693829 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000056039 ENSRNOG00000037143 block1693829 ......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...... #ENSRNOT00000053700 ENSRNOG00000035577 rno-mir-141 block1693829 ((..(((((...(((.(((((((..((((.(((((((.(((.................))))))))))..))))))))))).)))...))))))). 1.000 -36.93 # humanZ8p3 (((((((..((((((((((((.(((...((.......))...))))))))))).)))))))))))........ 0.980 -29.30 # mouseZ13p3 .((((((((((..((((.(((((((.(((.................))))))))))..))))))))))).)))..... 1.000 -31.53 # #block1693829 chromosome:4:160840903:160840998:1 Same_strand|Intronic_coding|ENSRNOT00000056039|ENSRNOG00000037143 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053700|ENSRNOG00000035577 ## ENSRNOG00000035577|miRNA|rno-mir-141|rno-mir-141 [Source:miRBase;Acc:MI0000914] ## ENSRNOG00000037145|protein_coding|| ## ENSRNOG00000037143|protein_coding|| ## {ASMIR: rno-mir-141-as} #humanZ8p3 chromosome:12:6943528:6943600:-1 Opposite_strand|Exonic_non-coding|ENST00000384975|ENSG00000207708|miRNA|hsa-mir-141 [Source:miRBase;Acc:MI0000457] ## {ASMIR: hsa-mir-141-as} #mouseZ13p3 chromosome:6:124667931:124668008:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083540|ENSMUSG00000065474|miRNA|mmu-mir-141 [Source:miRBase;Acc:MI0000166] ## {ASMIR: mmu-mir-141-as} ========== block1693830 (Antisense miRBase rno-mir-200c-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block1693830: 0.001 randfold humanZ12p3_block1693830: 0.002 randfold mouseZ14p3_block1693830: 0.001 #forester humanZ12p3_block1693830: 0.975766 forester mouseZ14p3_block1693830: 1 #identity: 96.68 block1693830 ACTGCTGGGTAAGACGAG #rat_gr123897_libT5S1 18 1 block1693830 TGGACGCCGATGACACAGGGGCAGGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACCAGCACCCAAACACTGCTGGGTAAGACGAGGGCCCCTACCCAACCAGTCCA---- humanZ12p3 -----------------------GGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACC-GCACCCAAACACTGCTGGGTAAGACGAGGGCCCCCGCCCAGCCC--------- mouseZ14p3 T----------------GGGACAGGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACCAGCACCCAAACACTGCTGGGTAAGACGAGGGCCCCTACCCAACCAGTCCACCTT ****************************************** ********************************** **** ** block1693830 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000056049 ENSRNOG00000037145 block1693830 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000056039 ENSRNOG00000037143 block1693830 ................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................... ..... #ENSRNOT00000053710 ENSRNOG00000035587 rno-mir-200c block1693830 .((((.............(((.((((((((...((.((((((((((((............................))))))))))))))...)))))))).))).....)))). 0.540 -46.26 # humanZ12p3 (((((((...((.((((((((((((................. ..........))))))))))))))...))))))).......... 0.906 -33.83 # mouseZ14p3 ( (((..((((((((...((.((((((((((((............................))))))))))))))...)))))))).))))............. 0.985 -41.09 # #block1693830 chromosome:4:160841317:160841431:1 Same_strand|Intronic_coding|ENSRNOT00000056039|ENSRNOG00000037143 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053710|ENSRNOG00000035587 ## ENSRNOG00000035587|miRNA|rno-mir-200c|rno-mir-200c [Source:miRBase;Acc:MI0000942] ## ENSRNOG00000037145|protein_coding|| ## ENSRNOG00000037143|protein_coding|| ## {ASMIR: rno-mir-200c-as} #humanZ12p3 chromosome:12:6943109:6943194:-1 Opposite_strand|Boundary_non-coding|ENST00000384980|ENSG00000207713|miRNA|hsa-mir-200c [Source:miRBase;Acc:MI0000650] ## {ASMIR: hsa-mir-200c-as} #mouseZ14p3 chromosome:6:124668329:124668431:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083528|ENSMUSG00000065462|miRNA|mmu-mir-200c [Source:miRBase;Acc:MI0000694] ## {ASMIR: mmu-mir-200c-as} ========== block1867678 (Antisense miRBase rno-mir-101a-as) [miRBaseNonMapped_lenNOK_randfoldOK] ========== #randfold block1867678: 0.001 randfold humanZ15p3_block1867678: 0.001 randfold mouseZ23p3_block1867678: 0.002 #forester humanZ15p3_block1867678: 0.651145 forester mouseZ23p3_block1867678: 1 #identity: 98.01 block1867678 TCAGTTATCACAGTACTG #rat_gr821811_libT2S1 18 1 block1867678 TCAGTTATCACAGTACTG #rat_gr821811_libT4S2 18 1 block1867678 TCAGTTATCACAGTACTG #rat_gr821811_libT5S2 18 1 block1867678 ----------------GGAGGAAGGCAAGATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATGGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACCA------------------- humanZ15p3 ----------------------------GATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATAGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACTGT------------------ mouseZ23p3 GTGATGAGACTTCTCGGGAGGAAGGCAAGATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATGGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACCGTGTCCGTCAGTGACGTCAC ********************************************* ************************************************ block1867678 ..... ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........... ..... #ENSRNOT00000053722 ENSRNOG00000035599 rno-mir-101a block1867678 ((.((..((((....(((((((....(((((((((((((((.((((.((........)))))).......)))))))))))))))....)))))))))))..)).)). 0.880 -47.50 # humanZ15p3 ((((((((((....(((((((((((((((.(((...((((......)).))...))).)))))))))))))))....))))))).)))......... 0.953 -42.00 # mouseZ23p3 ((((((..(((...((((.((..(((..((((((((((....(((((((((((((((.((((.((........)))))).......)))))))))))))))....))))))).))).))).))...))))..)))..)))))) 0.839 -60.20 # #block1867678 chromosome:5:121990567:121990674:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053722|ENSRNOG00000035599 ## ENSRNOG00000035599|miRNA|rno-mir-101a|rno-mir-101a [Source:miRBase;Acc:MI0000886] ## {ASMIR: rno-mir-101a-as} #humanZ15p3 chromosome:1:65296699:65296795:1 Opposite_strand|Boundary_non-coding|ENST00000362265|ENSG00000199135|miRNA|hsa-mir-101-1 [Source:miRBase;Acc:MI0000103] ## {ASMIR: hsa-mir-101-1-as} #mouseZ23p3 chromosome:4:101019520:101019662:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083517|ENSMUSG00000065451|miRNA|mmu-mir-101a [Source:miRBase;Acc:MI0000148] ## {ASMIR: mmu-mir-101a-as} ========== block1904082 (Antisense miRBase rno-mir-200a-as) [miRBaseNonMapped] ========== #randfold block1904082: 0.029 randfold humanZ18p3_block1904082: 0.001 randfold mouseZ26p3_block1904082: 0.005 #forester humanZ18p3_block1904082: 0.848604 forester mouseZ26p3_block1904082: 0.964523 #identity: 87.37 block1904082 CAGCACTGTCCGGTAAGATGCCC #rat_gr291380_libT1S2 23 2 block1904082 ------------------CTTCGGCGAGTGTTGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCCAAGAAATCCAGCACTGTCCGGTAAGATGCCCACAGAGGCCCAGGTATGCTTTGG--------TAGGAAG----- humanZ18p3 --TGCCTCGGTGG--TGTCCCCGGCGAGCGGCGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCTGGGAAATCCAGCACTGTCCGGTAAGATGCTCACAGGGGCCCGGGAGGGACGTGGGGTCCCGCCAGGCA------ mouseZ26p3 TGTGTATCATCAGCCTGTCTTCGGCGAATGGTGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCCAAGAAATCCAGCACTGTCCGGTAAGATGCCCACAGAGGCCCAGGTATGCTCTGG--------CAGGAAGACACA * ****** * ******************************************** *************************** ***** ***** ** * *** *** * block1904082 ..... .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........... ....... ..... #ENSRNOT00000053773 ENSRNOG00000035650 rno-mir-200a block1904082 ((((.((((((((((((((..((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)).))))))...))))))..) )..)))) 0.980 -41.40 # humanZ18p3 .((((.((((( ..((((((........((((((.(((.(((.((((.(((((.(((((((((.((.((......))...)).))))))))).))))))))).))).))))))))).......)).))))..))))))))). 0.889 -71.36 # mouseZ26p3 .((((........((((((...((((.((..((((((..((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)).)))))).)).))))..)) ))))...)))). 0.994 -52.30 # #block1904082 chromosome:5:172898207:172898326:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053773|ENSRNOG00000035650 ## ENSRNOG00000035650|miRNA|rno-mir-200a|rno-mir-200a [Source:miRBase;Acc:MI0000943] ## {ASMIR: rno-mir-200a-as} #humanZ18p3 chromosome:1:1093081:1093221:-1 Opposite_strand|Boundary_non-coding|ENST00000384875|ENSG00000207607|miRNA|hsa-mir-200a [Source:miRBase;Acc:MI0000737] ## {SimpF: oe = 0.62 0 CpG} ## {ASMIR: hsa-mir-200a-as} #mouseZ26p3 chromosome:4:155428975:155429117:1 Opposite_strand|Boundary_non-coding|ENSMUST00000051509|ENSMUSG00000029074|protein_coding|tubulin tyrosine ligase-like family, member 10 Gene [Source:MGI (curated);Acc:Ttll10-001] ## Opposite_strand|Intronic_non-coding|ENSMUST00000097731|ENSMUSG00000029074|protein_coding|tubulin tyrosine ligase-like family, member 10 Gene [Source:MGI (curated);Acc:Ttll10-001] ## {ASMIR: mmu-mir-200a-as} ========== block1980627 (Antisense miRBase rno-mir-342-as) [miRBaseNonMapped_lenNOK_randfoldOK_bulgeHIGH] ========== #randfold block1980627: 0.001 randfold humanZ19p3_block1980627: 0.002 randfold mouseZ27p3_block1980627: 0.005 #forester humanZ19p3_block1980627: 0.948373 forester mouseZ27p3_block1980627: 1 #identity: 98.91 block1980627 GGGTGCGATTTCTGTGTGA #rat_gr615452_libT2S2 19 1 block1980627 GGGGTGGTGCTCAGCAGGCCAAGGTGACGGGTGCGATTTCTGTGTGAGACAATTCCATTGACCATGTCCCTCAATCACAGATAGCACCCCTCACCTTGAGCCCATTTT humanZ19p3 ----------------------------GGGTGCGATTTCTGTGTGAGACAATTCCATTAACCATGTCCCTCAATCACAGATAGCACCC------------------- mouseZ27p3 ----------------------------GGGTGCGATTTCTGTGTGAGACAATTCCATTGACCATGTCCCTCAATCACAGATAGCACCC------------------- ******************************* ***************************** block1980627 ---------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000032757 ENSRNOG00000014476 Evl block1980627 ---------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000019583 ENSRNOG00000014476 Evl block1980627 ...............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.... #ENSRNOT00000053735 ENSRNOG00000035612 rno-mir-342 block1980627 .((((((.(((((........((((((.((((((....(((((((((((((..((....))...))))..)))..))))))..)))))).))))))))))))))))). 0.440 -44.40 # humanZ19p3 ((((((....(((((((((((((.............))))..)))..))))))..)))))) 1.000 -21.42 # mouseZ27p3 ((((((....(((((((((((((..((....))...))))..)))..))))))..)))))) 0.994 -21.80 # #block1980627 chromosome:6:132990798:132990905:-1 Opposite_strand|Intronic_coding|ENSRNOT00000019583|ENSRNOG00000014476 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053735|ENSRNOG00000035612 ## ENSRNOG00000035612|miRNA|rno-mir-342|rno-mir-342 [Source:miRBase;Acc:MI0000626] ## ENSRNOG00000014476|protein_coding|Evl|Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein- like). [Source:UniProtKB/Swiss-Prot;Acc:O08719] ## {ASMIR: rno-mir-342-as} #humanZ19p3 chromosome:14:99645726:99645873:-1 Opposite_strand|Intronic_coding|ENST00000355449|ENSG00000196405|protein_coding|Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein-like) [Source:UniProtKB/Swiss-Prot;Acc:Q9UI08] ## Opposite_strand|Boundary_non-coding|ENST00000362212|ENSG00000199082|miRNA|hsa-mir-342 [Source:miRBase;Acc:MI0000805] ## {ASMIR: hsa-mir-342-as} #mouseZ27p3 chromosome:12:109896811:109896958:-1 Opposite_strand|Intronic_coding|ENSMUST00000109854|ENSMUSG00000021262|protein_coding|Ena-vasodilator stimulated phosphoprotein Gene [Source:MGI Symbol;Acc:MGI:1194884] ## Opposite_strand|Boundary_non-coding|ENSMUST00000083502|ENSMUSG00000065436|miRNA|mmu-mir-342 [Source:miRBase;Acc:MI0000627] ## {Repeats: trf 0 class=trf} ## {ASMIR: mmu-mir-342-as} ========== block1981445 (Antisense miRBase rno-mir-376a-as) [miRBaseNonMapped_lenNOK_5varHIGH_randfoldOK] ========== #randfold block1981445: 0.010 randfold humanZ23p3_block1981445: 0.001 randfold mouseZ41p3_block1981445: 0.002 #forester humanZ23p3_block1981445: 0.856176 forester mouseZ41p3_block1981445: 1 #identity: 96.19 block1981445 GTGGATTTTCCTCTACGAT #rat_gr650137_libT2S2 19 1 block1981445 GTGGATTTTCCTCTACGAT #rat_gr650137_libT5S2 19 1 block1981445 CGTGGATTTTCCTCTACGAT #rat_gr405282_libT5S1 20 1 block1981445 ACGTGGATTTTCCTCTACGAT #rat_gr114001_libT5S2 21 1 block1981445 GTGGTTTCCCAAGCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATATCAAAGAACAACTCGATCCAG humanZ23p3 -------------------------------ACGTGGATTTTCCTCTATGATTAATCATAAATAATGTACTCATAGAAGGAGAATCTACCT----------------------------- mouseZ41p3 ------------GCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATATCA------------------ ***************** ***** **** **** ************************** block1981445 .........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................... #ENSRNOT00000053651 ENSRNOG00000035528 rno-mir-376a block1981445 .(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).)))).))))))))))).))))...))))))).........)).))). 0.780 -28.11 # humanZ23p3 ..((((((((((((((((((.....(((.....)))...))))))).))))))))))).. 1.000 -22.90 # mouseZ41p3 ........(((((...((((.(((((((((((((((.((...((((.......)).)))).)))).))))))))))).))))...))))) 0.994 -23.00 # #block1981445 chromosome:6:134404672:134404791:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053651|ENSRNOG00000035528 ## ENSRNOG00000035528|miRNA|rno-mir-376a|rno-mir-376a [Source:miRBase;Acc:MI0003545] ## {ASMIR: rno-mir-376a-as} #humanZ23p3 chromosome:14:100576827:100576986:-1 intergenic ## {ASMIR: hsa-mir-376a-1-as} #mouseZ41p3 chromosome:12:110961984:110962073:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000093571|ENSMUSG00000076043|miRNA|mmu-mir-376a [Source:miRBase;Acc:MI0000793] ## {ASMIR: mmu-mir-376a-as} ========== block1981446 (Antisense miRBase rno-mir-539-as) [miRBaseNonMapped] ========== #randfold block1981446: 0.020 #forester #identity: 0.00 block1981446 ACACACCAAGGATAATTTCTCC #rat_gr72282_libT5S1 22 1 block1981446 tccgccagggcagtatttgatactcgaaaagaaattacccttgtatgattcatccaaaagagcaaACACACCAAGGATAATTTCTCCtcaagtatgaaacagtagcacagcagga ******************************************************************************************************************* block1981446 ........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................... #ENSRNOT00000054596 ENSRNOG00000036488 rno-mir-539 block1981446 (((((....((....(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).....))...)).))) 0.890 -25.10 # #block1981446 chromosome:6:134408897:134409011:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000054596|ENSRNOG00000036488 ## ENSRNOG00000036488|miRNA|rno-mir-539|rno-mir-539 [Source:miRBase;Acc:MI0003526] ## {ASMIR: rno-mir-539-as} ========== block1981450 (Antisense miRBase rno-mir-382-as) [miRBaseNonMapped_nonpairedHIGH] ========== #randfold block1981450: 0.016 randfold humanZ25p3_block1981450: 0.001 randfold mouseZ45p3_block1981450: 0.022 #forester humanZ25p3_block1981450: 0.980808 forester mouseZ45p3_block1981450: 1 #identity: 99.25 block1981450 AAGTGTTGTCCGTGAATGATTC #rat_gr56603_libT2S2 22 1 block1981450 GTCCTTAGAGGTAGCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACAGAAAAGCAGAGACA--------------- humanZ25p3 ------------------TGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCATAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCA------------------------------- mouseZ45p3 -------------GCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACAGAAAAGCAGAGACAAGACAGACAAAGGGC ************************************** ******************************************* block1981450 ........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................. ..... #ENSRNOT00000053748 ENSRNOG00000035625 rno-mir-382 block1981450 (((((........((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))))....)).)))).))). 0.630 -29.40 # humanZ25p3 .(((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))). 1.000 -27.70 # mouseZ45p3 ((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))))....)).))...................... 0.990 -28.40 # #block1981450 chromosome:6:134415246:134415361:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053748|ENSRNOG00000035625 ## ENSRNOG00000035625|miRNA|rno-mir-382|rno-mir-382 [Source:miRBase;Acc:MI0003548] ## {ASMIR: rno-mir-382-as} #humanZ25p3 chromosome:14:100590393:100590474:-1 Opposite_strand|Boundary_non-coding|ENST00000385009|ENSG00000207742|miRNA|hsa-mir-382 [Source:miRBase;Acc:MI0000790] ## {ASMIR: hsa-mir-382-as} #mouseZ45p3 chromosome:12:110971947:110972064:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083494|ENSMUSG00000065428|miRNA|mmu-mir-382 [Source:miRBase;Acc:MI0000799] ## {ASMIR: mmu-mir-382-as} ========== block1981452 (Antisense miRBase rno-mir-541-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK] ========== #randfold block1981452: 0.001 #forester #identity: 0.00 block1981452 TGGAGTGTGACCAACATC #rat_gr1003139_libT2S1 18 3 block1981452 TGGAGTGTGACCAACATC #rat_gr1003139_libT1S2 18 1 block1981452 gacttaggccataagcagagtatggattctgtgttcgccactcattttaaaattctTGGAGTGTGACCAACATCagaatcccttctctgattttggcaagagtt ******************************************************************************************************** block1981452 ............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............ #ENSRNOT00000054594 ENSRNOG00000036486 rno-mir-541 block1981452 (((((..((((....(((((...((((((((((((((.(((((...............))))))))...))).))))))))...)))))....))))..))))) 1.000 -38.96 # #block1981452 chromosome:6:134423733:134423836:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000054594|ENSRNOG00000036486 ## ENSRNOG00000036486|miRNA|rno-mir-541|rno-mir-541 [Source:miRBase;Acc:MI0003527] ## {ASMIR: rno-mir-541-as} ========== block1981454 (Antisense miRBase rno-mir-412-as) [miRBaseNonMapped] ========== #randfold block1981454: 0.145 randfold mouseZ48p3_block1981454: 0.004 #forester mouseZ48p3_block1981454: 1 #identity: 100.00 block1981454 ACGGCTAGTGGACCAGGTGA #rat_gr113102_libT5S2 20 1 block1981454 CATCCTGGCGCAGGCTGCGGCGGGCACCGACGGCTAGTGGACCAGGTGAAGTACATTAGAAACAATTACTTTCCAGCTGGTCGACCATCCGTCCCATACCCCAGAGCGAAGATGA mouseZ48p3 ----------------------------GACGGCTAGTGGACCAGGTGAAGTACATTAGAAACAATTACTTTCCAGCTGGTCGACCATCCGTC---------------------- ***************************************************************** block1981454 ..........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................... #ENSRNOT00000053613 ENSRNOG00000035490 rno-mir-412 block1981454 ((((....(((...(((.((..((....(((((...((.((((((.(((((((.(((......))))))))..)).)))))).))...)))))))...)).))).)))..)))). 0.850 -38.40 # mouseZ48p3 (((((...((.((((((.(((((((.(((......))))))))..)).)))))).))...))))) 1.000 -23.90 # #block1981454 chromosome:6:134424636:134424750:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053613|ENSRNOG00000035490 ## ENSRNOG00000035490|miRNA|rno-mir-412|rno-mir-412 [Source:miRBase;Acc:MI0003488] ## {ASMIR: rno-mir-412-as} #mouseZ48p3 chromosome:12:110981507:110981571:-1 Opposite_strand|Exonic_non-coding|ENSMUST00000083636|ENSMUSG00000065570|miRNA|mmu-mir-412 [Source:miRBase;Acc:MI0001164] ## {ASMIR: mmu-mir-412-as} ========== block1981455 (Antisense miRBase rno-mir-369-as) [miRBaseNonMapped] ========== #randfold block1981455: 0.035 randfold humanZ30p3_block1981455: 0.002 randfold mouseZ49p3_block1981455: 0.004 #forester humanZ30p3_block1981455: 0.5463 forester mouseZ49p3_block1981455: 0.901744 #identity: 95.76 block1981455 GCGAATATAACACGGTCGATCTC #rat_gr561590_libT5S2 23 1 block1981455 TCTCCAAGCTGAGCATTGATACTGAGAAAAGATCAACCATGTATTATTCGAAGTCAGCTAAGCGAATATAACACGGTCGATCTCCCTTCAAGTACCAGCAGAGGTGCCGAGCTGAGG humanZ30p3 -----------------------------AGATCAACCATGTATTATTCGAAGTCAATAAAGCGAATATAACACGGTCGATCTCCC------------------------------- mouseZ49p3 -----------------------------AGATCAACCATGTATTATTCGAAGTCAGCCAAGCGAATATAACACGGTCGATCT---------------------------------- *************************** ************************ block1981455 ......................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......................... #ENSRNOT00000053620 ENSRNOG00000035497 rno-mir-369 block1981455 .(((..((((..((((((.(((((((...(((((.(((.(((..((((((.((....))...))))))..))).))).)))))...)))).))).))......))))..))))))). 0.720 -32.30 # humanZ30p3 (((((.(((.(((..((((((............))))))..))).))).)))))... 1.000 -15.20 # mouseZ49p3 (((((.(((.(((..((((((............))))))..))).))).))))) 1.000 -15.10 # #block1981455 chromosome:6:134424757:134424873:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053620|ENSRNOG00000035497 ## ENSRNOG00000035497|miRNA|rno-mir-369|rno-mir-369 [Source:miRBase;Acc:MI0003551] ## {ASMIR: rno-mir-369-as} #humanZ30p3 chromosome:14:100601693:100601749:-1 Opposite_strand|Exonic_non-coding|ENST00000362155|ENSG00000199025|miRNA|hsa-mir-369 [Source:miRBase;Acc:MI0000777] ## {SimpF: oe = 0.96 0 CpG,rank = 1 -1 FirstEF} ## {ASMIR: hsa-mir-369-as} #mouseZ49p3 chromosome:12:110981587:110981743:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083627|ENSMUSG00000065561|miRNA|mmu-mir-369 [Source:miRBase;Acc:MI0003535] ## {ASMIR: mmu-mir-369-as} ========== block2301627 (Antisense miRBase rno-let-7a-2-as) [miRBaseNonMapped_lenNOK_cloningOK] ========== #randfold block2301627: 0.190 randfold humanZ34p3_block2301627: 0.137 randfold mouseZ54p3_block2301627: 0.004 #forester humanZ34p3_block2301627: 0.896733 forester mouseZ54p3_block2301627: 0.914541 #identity: 94.12 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT5S1 18 4 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT1S1 18 3 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT1S2 18 3 block2301627 AACTATACAACCTACTACCTCA #rat_gr37476_libT5S2 22 2 block2301627 CTATACAACCTACTACCTC #rat_gr414363_libT1S2 19 2 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT5S2 18 2 block2301627 CTATACAACCTACTACCTCA #rat_gr414364_libT1S1 20 1 block2301627 CTATACAACCTACTACCTC #rat_gr414363_libT2S1 19 1 block2301627 CTATACAACCTACTACCTC #rat_gr414363_libT2S2 19 1 block2301627 CTATACAACCTACTACCTC #rat_gr414363_libT5S1 19 1 block2301627 CTATACAACCTACTACCTC #rat_gr414363_libT5S2 19 1 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT2S2 18 1 block2301627 CTATACAACCTACTACCT #rat_gr414362_libT4S2 18 1 block2301627 -----------------GTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGTTGTAACTCTAAACTATACAACCTACTACCTCAGCCTGGGAGCATGCCGTCACAGTGGC---------- humanZ34p3 -------TTCTCACCATGTTGTTTAGTGCAAGACCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGATGTAATTCTAAACTATACAACCTACTACCTCAACCTGGGAGCATGCAGTCACAATGGCTGGAA----- mouseZ54p3 TAGCTCGTTCTTGCCATGTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGATGTAACTCTAAACTATACAACCTACTACCTCAACCTGGGAACATGCAGTCACAATGGCTGGAGAGCTA **** ** ******* *************************************** ***** ************************** ******* ***** ****** **** block2301627 ..... ........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......... ..... #ENSRNOT00000053671 ENSRNOG00000035548 rno-let-7a-2 block2301627 ((..((.((.(((.(((((.(((..((.(((.(((.((((.((((.....................)))).)))).))).))).))...)))))).)).)))...)).))..)) 0.920 -29.80 # humanZ34p3 .(((..((((..((....((((....(((.(((..((.(((.(((.((((.(((((((......)))).........))).)))).))).))).))...)))))).)))).....))..))))..))). 0.927 -29.80 # mouseZ54p3 ((((((..(((.(((((((.((....((((..((((.(((..((.(((.(((.((((.(((((((......)))).........))).)))).))).))).))...)))))))...)))))).))).)))).))))))))) 0.985 -43.80 # #block2301627 chromosome:8:44525759:44525872:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053671|ENSRNOG00000035548 ## ENSRNOG00000035548|miRNA|rno-let-7a-2|rno-let-7a-2 [Source:miRBase;Acc:MI0000828] ## {ASMIR: rno-let-7a-2-as} #humanZ34p3 chromosome:11:121522410:121522538:1 Opposite_strand|Boundary_non-coding|ENST00000362105|ENSG00000198975|miRNA|hsa-let-7a-2 [Source:miRBase;Acc:MI0000061] ## {ASMIR: hsa-let-7a-2-as} #mouseZ54p3 chromosome:9:41344779:41344919:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083680|ENSMUSG00000065614|miRNA|mmu-let-7a-2 [Source:miRBase;Acc:MI0000557] ## {ASMIR: mmu-let-7a-2-as} ========== block2356090 (Antisense miRBase rno-mir-191-as) [miRBaseNonMapped_lenNOK_cloningOK_randfoldOK_bulgeHIGH] ========== #randfold block2356090: 0.001 randfold mouseZ1p4_block2356090: 0.002 #forester mouseZ1p4_block2356090: 1 #identity: 100.00 block2356090 GAACGAAATCCAAGTGCAGC #rat_gr483544_libT3S2 20 4 block2356090 GAACGAAATCCAAGTGCA #rat_gr483542_libT3S1 18 3 block2356090 GAACGAAATCCAAGTGCAGCT #rat_gr483545_libT3S2 21 2 block2356090 GAACGAAATCCAAGTGCAGCTGG #rat_gr483546_libT3S1 23 1 block2356090 GAACGAAATCCAAGTGCAGCT #rat_gr483545_libT1S2 21 1 block2356090 GAACGAAATCCAAGTGCAGC #rat_gr483544_libT3S1 20 1 block2356090 GAACGAAATCCAAGTGCAG #rat_gr483543_libT3S1 19 1 block2356090 GAACGAAATCCAAGTGCAG #rat_gr483543_libT3S2 19 1 block2356090 GAACGAAATCCAAGTGCA #rat_gr483542_libT1S1 18 1 block2356090 -------------------CAGGGCGCTGCTCAGGCAGGAGAGCAGGGAACGAAATCCAAGTGCAGCTGGAATGCTCTGGAGACAACAGCTGCTTTTGGGATTCCGTTGCCCGCTGTCCAGCCATTGGAGGAGGGCTCT---------------- mouseZ1p4 GAGACCACATTATCTGGGCCAGGGCGCTGCTCAGGCAGGAGAGCAGGGAACGAAATCCAAGTGCAGCTGGAATGCTCTGGAGACAACAGCTGCTTTTGGGATTCCGTTGCCCGCTGTCCAGCCATTGGAGGAGGGCTCTTGCTCCCAGGTCACTC ************************************************************************************************************************ block2356090 ..... .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................ ..... #ENSRNOT00000053579 ENSRNOG00000035456 rno-mir-191 block2356090 .(((((.((.(((.(((.(((.(((.((.((((.(((((....(((((((...((((....)).)).))))))).....))))).)))).)).))).))).)))....))).)).))))) 0.990 -60.40 # mouseZ1p4 ..((((.........((((.(((((.((.(((.(((.(((.(((.((.((((.(((((....(((((((...((((....)).)).))))))).....))))).)))).)).))).))).)))....))).)).))))).))))...)))).... 0.974 -70.60 # #block2356090 chromosome:8:113614344:113614463:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053579|ENSRNOG00000035456 ## ENSRNOG00000035456|miRNA|rno-mir-191|rno-mir-191 [Source:miRBase;Acc:MI0000934] ## {ASMIR: rno-mir-191-as} #mouseZ1p4 chromosome:9:108470610:108470764:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083681|ENSMUSG00000065615|miRNA|mmu-mir-191 [Source:miRBase;Acc:MI0000233] ## {ASMIR: mmu-mir-191-as} ========== block2680078 (Antisense miRBase rno-mir-501-as) [miRBaseNonMapped] ========== #randfold block2680078: 0.017 randfold mouseZ4p4_block2680078: 0.002 #forester mouseZ4p4_block2680078: 1 #identity: 96.43 block2680078 CAAATCCTTGCCCGGGTGCATT #rat_gr262085_libT2S2 22 1 block2680078 ---------CCTC----------ACATGCAGACCAGGCTTACCTTCCCCAAATCCTTGCCCGGGTGCATTGCATACAAATAGCATTTTCACCCAGGGACAAAGGATTAGAGAGGACGAGCAGAGCAGAAGG------------------ mouseZ4p4 ATGCACAGACCTCCTGTCCTTCTCCATGCAGATCAGGCTCACCTTCCCCAAATCCTTGCCCGGGTGCATTGCATACAAATAGCATTTTCACCCAGGGACAAAGGATTAGAGAGGATGAGCAGAGCAGAAGGCCCAGGCACCTGTACCAT **** ******** ****** *************************************************************************** *************** block2680078 ..... .... .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........... ..... #ENSRNOT00000054671 ENSRNOG00000036567 rno-mir-501 block2680078 (((. ...(((.......((((..((((....(((((((.((((((((...(((.........)))....))))).)))...)))))))...))))..))))...)))..))) 0.960 -34.40 # mouseZ4p4 ....((((....((((.(((((....(((...((..(((((.((((....(((((((.((((((((...(((.........)))....))))).)))...)))))))...)))).))))).))))))))))..))))...))))..... 0.965 -50.80 # #block2680078 chromosome:X:27331140:27331251:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000054671|ENSRNOG00000036567 ## ENSRNOG00000036567|miRNA|rno-mir-501|rno-mir-501 [Source:miRBase;Acc:MI0003480] ## {ASMIR: rno-mir-501-as} #mouseZ4p4 chromosome:X:6818348:6818496:1 Opposite_strand|Boundary_non-coding|ENSMUST00000004428|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## Opposite_strand|Intronic_coding|ENSMUST00000115746|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## {ASMIR: mmu-mir-501-as} ========== sblock10170 (Antisense miRBase rno-mir-299-as) [miRBaseNonMapped_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10170: 0.001 randfold humanZ9p81_sblock10170: 0.001 randfold mouseZ26p81_sblock10170: 0.001 #forester humanZ9p81_sblock10170: 0.932339 forester mouseZ26p81_sblock10170: 1 #identity: 97.39 sblock10170 TATGTGGGACGGTAAACCA #rat_gr798304_libT1S1 19 3 sblock10170 GTATGTGGGACGGTAAACCA #rat_gr631488_libT1S1 20 2 sblock10170 TATGTGGGACGGTAAACC #rat_gr798303_libT1S1 18 2 sblock10170 GTATGTGGGACGGTAAACC #rat_gr631487_libT1S2 19 2 sblock10170 GTATGTGGGACGGTAAACC #rat_gr631487_libT5S2 19 2 sblock10170 GTATGTGGGACGGTAAACCA #rat_gr631488_libT1S2 20 1 sblock10170 TATGTGGGACGGTAAACC #rat_gr798303_libT1S2 18 1 sblock10170 GTATGTGGGACGGTAAACC #rat_gr631487_libT1S1 19 1 sblock10170 GTATGTGGGACGGTAAACC #rat_gr631487_libT3S2 19 1 sblock10170 GTATGTGGGACGGTAAAC #rat_gr631486_libT3S1 18 1 sblock10170 GGTTTACCGTCCCACATAC #rat_gr625801_libT1S2 19 3 sblock10170 GGTTTACCGTCCCACATAC #rat_gr625801_libT1S1 19 2 sblock10170 GGTTTACCGTCCCACATACAT #rat_gr625802_libT5S1 21 1 sblock10170 CGGTTTACCGTCCCACATACA #rat_gr403207_libT1S1 21 1 sblock10170 CGGTTTACCGTCCCACATAC #rat_gr403206_libT1S1 20 1 sblock10170 CGGTTTACCGTCCCACAT #rat_gr403205_libT1S2 18 1 sblock10170 CGGACTGGATGGCTGGGCTGGATACCAAGAAGCGGTTTACCGTCCCACATACATACTCAAAATGTATGTGGGACGGTAAACCATTTCTTCAAGTACCGCGTGACAGCAGGGACAGCTG humanZ9p81 --------------------------------CGGTTTACCATCCCACATACATATTCAAAATGTATGTGGGACGGTAAACCA----------------------------------- mouseZ26p81 --------------------------------CGGTTTACCGTCCCACATACATACTCAAAATGTATGTGGGACGGTAAACCA----------------------------------- ********* ************* *************************** sblock10170 ...............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................. #ENSRNOT00000053630 ENSRNOG00000035507 rno-mir-299 sblock10170 (((.(((....((((.(((((.(((.((((((.(((((((((((((((((((((.......))))))))))))))))))))).))))))...)))))).))..)))).....)))))) 1.000 -58.90 # humanZ9p81 .((((((((.((((((((((((.......)))))))))))).)))))))). 1.000 -32.80 # mouseZ26p81 .(((((((((((((((((((((.......))))))))))))))))))))). 1.000 -38.50 # #sblock10170 chromosome:6:134389793:134389910:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053630|ENSRNOG00000035507 ## ENSRNOG00000035507|miRNA|rno-mir-299|rno-mir-299 [Source:miRBase;Acc:MI0000970] ## {ASMIR: rno-mir-299-as} #humanZ9p81 chromosome:14:100559835:100559992:-1 Opposite_strand|Boundary_non-coding|ENST00000385016|ENSG00000207749|miRNA|hsa-mir-299 [Source:miRBase;Acc:MI0000744] ## {ASMIR: hsa-mir-299-as} #mouseZ26p81 chromosome:12:110948799:110948956:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083616|ENSMUSG00000065550|miRNA|mmu-mir-299 [Source:miRBase;Acc:MI0000399] ## {ASMIR: mmu-mir-299-as} ========== sblock10183 (Antisense miRBase rno-mir-203-as) [miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock10183: 0.001 randfold humanZ12p81_sblock10183: 0.004 randfold mouseZ29p81_sblock10183: 0.005 #forester humanZ12p81_sblock10183: 1 forester mouseZ29p81_sblock10183: 0.867359 #identity: 97.85 sblock10183 TTGAACTGTTAAGAACCACTG #rat_gr1131686_libT5S2 21 38 sblock10183 TTGAACTGTTAAGAACCAC #rat_gr1131684_libT5S2 19 33 sblock10183 TTGAACTGTTAAGAACCACTGG #rat_gr1131687_libT5S2 22 29 sblock10183 TTGAACTGTTAAGAACCAC #rat_gr1131684_libT5S1 19 23 sblock10183 TTGAACTGTTAAGAACCA #rat_gr1131683_libT5S1 18 23 sblock10183 TTGAACTGTTAAGAACCACTG #rat_gr1131686_libT5S1 21 22 sblock10183 TTGAACTGTTAAGAACCACTG #rat_gr1131686_libT2S2 21 19 sblock10183 TTGAACTGTTAAGAACCACT #rat_gr1131685_libT5S2 20 19 sblock10183 TTGAACTGTTAAGAACCAC #rat_gr1131684_libT2S2 19 18 sblock10183 TTGAACTGTTAAGAACCA #rat_gr1131683_libT5S2 18 18 sblock10183 TTGAACTGTTAAGAACCACT #rat_gr1131685_libT5S1 20 12 sblock10183 TTGAACTGTTAAGAACCA #rat_gr1131683_libT2S2 18 12 sblock10183 TTGAACTGTTAAGAACCACTGG #rat_gr1131687_libT2S2 22 9 sblock10183 TTGAACTGTTAAGAACCACTGG #rat_gr1131687_libT5S1 22 8 sblock10183 TTGAACTGTTAAGAACCACTG #rat_gr1131686_libT2S1 21 7 sblock10183 TTGAACTGTTAAGAACCACTGGAC #rat_gr1131689_libT2S2 24 6 sblock10183 TTGAACTGTTAAGAACCACTGGAC #rat_gr1131689_libT5S1 24 6 sblock10183 TTGAACTGTTAAGAACCACTGGA #rat_gr1131688_libT5S2 23 6 sblock10183 TTGAACTGTTAAGAACCAC #rat_gr1131684_libT2S1 19 5 sblock10183 TTGAACTGTTAAGAACCACT #rat_gr1131685_libT2S2 20 4 sblock10183 TTGAACTGTTAAGAACCACTGGAC #rat_gr1131689_libT2S1 24 3 sblock10183 TTGAACTGTTAAGAACCACTGGAC #rat_gr1131689_libT5S2 24 3 sblock10183 TTGAACTGTTAAGAACCACTGGA #rat_gr1131688_libT2S1 23 3 sblock10183 TTGAACTGTTAAGAACCACTGGA #rat_gr1131688_libT5S1 23 3 sblock10183 TGAACTGTTAAGAACCACTGG #rat_gr926044_libT2S2 21 3 sblock10183 TGAACTGTTAAGAACCAC #rat_gr926041_libT5S2 18 3 sblock10183 TGAACTGTTAAGAACCACTG #rat_gr926043_libT5S1 20 2 sblock10183 TGAACTGTTAAGAACCACTG #rat_gr926043_libT5S2 20 2 sblock10183 TGAACTGTTAAGAACCAC #rat_gr926041_libT2S1 18 2 sblock10183 TGAACTGTTAAGAACCAC #rat_gr926041_libT5S1 18 2 sblock10183 TTGAACTGTTAAGAACCACTGGACC #rat_gr1131690_libT5S2 25 1 sblock10183 TGAACTGTTAAGAACCACTGGAC #rat_gr926045_libT5S1 23 1 sblock10183 TTGAACTGTTAAGAACCACTGGAC #rat_gr1131689_libT3S2 24 1 sblock10183 TTGAACTGTTAAGAACCACTGGA #rat_gr1131688_libT2S2 23 1 sblock10183 TGAACTGTTAAGAACCACTGG #rat_gr926044_libT5S2 21 1 sblock10183 TTGAACTGTTAAGAACCACTGG #rat_gr1131687_libT2S1 22 1 sblock10183 TTGAACTGTTAAGAACCACTG #rat_gr1131686_libT3S2 21 1 sblock10183 GTTGAACTGTTAAGAACCACTG #rat_gr660854_libT2S2 22 1 sblock10183 GTTGAACTGTTAAGAACCACTG #rat_gr660854_libT5S1 22 1 sblock10183 TGAACTGTTAAGAACCACT #rat_gr926042_libT5S1 19 1 sblock10183 TTGAACTGTTAAGAACCACT #rat_gr1131685_libT2S1 20 1 sblock10183 GTTGAACTGTTAAGAACCACT #rat_gr660853_libT5S1 21 1 sblock10183 TGAACTGTTAAGAACCAC #rat_gr926041_libT4S2 18 1 sblock10183 GTTGAACTGTTAAGAACCAC #rat_gr660852_libT5S1 20 1 sblock10183 GTTGAACTGTTAAGAACCAC #rat_gr660852_libT5S2 20 1 sblock10183 TTGAACTGTTAAGAACCA #rat_gr1131683_libT2S1 18 1 sblock10183 TTGAACTGTTAAGAACCA #rat_gr1131683_libT3S2 18 1 sblock10183 GTTGAACTGTTAAGAACC #rat_gr660851_libT5S1 18 1 sblock10183 AGTGGTCCTAAACATTTCACAATTG #rat_gr201053_libT2S1 25 2 sblock10183 AGTGGTCCTAAACATTTCACAA #rat_gr201052_libT5S1 22 1 sblock10183 AGTGGTCCTAAACATTTCAC #rat_gr201051_libT2S2 20 1 sblock10183 TAGTGGTCCTAAACATTTCA #rat_gr786942_libT5S2 20 1 sblock10183 TGCGCGCCGGGTCTAGTG #rat_gr970163_libT3S1 18 1 sblock10183 GCTGTCGCCGCTGCCGTGCGCGCCGGGTCTAGTGGTCCTAAACATTTCACAATTGCGCTACAGAACTGTTGAACTGTTAAGAACCACTGGACCAGGCGCGCCTGCACACAGAAGC humanZ12p81 ----------------------------CTAGTGGTCCTAAACATTTCACAATTGCGCTACAGAACTGTTGAACTGTTAAGAACCACTGG------------------------- mouseZ29p81 ----------------------------CTAGTGGTCCTAAACATTTCACAATTGTGCTACAGAACTGTTGAACTGTCAAGAACCACTGG------------------------- *************************** ********************* ************ sblock10183 .........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................... #ENSRNOT00000053612 ENSRNOG00000035489 rno-mir-203 sblock10183 (((.((.....(((...(((((((.(((((((((((.((.((((.((((((.(((.....)))...))).))).)))).)).))))))))))).)))))))..)))....))))) 0.920 -49.30 # humanZ12p81 ((((((((.((.((((.((((((.(((.....)))...))).))).)))).)).)))))))) 1.000 -17.80 # mouseZ29p81 ((((((((.((..(((.((((((.((.((...)).)).))).))).)))..)).)))))))) 0.997 -18.20 # #sblock10183 chromosome:6:136932075:136932189:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053612|ENSRNOG00000035489 ## ENSRNOG00000035489|miRNA|rno-mir-203|rno-mir-203 [Source:miRBase;Acc:MI0000945] ## {ASMIR: rno-mir-203-as} #humanZ12p81 chromosome:14:103653474:103653628:-1 Opposite_strand|Boundary_non-coding|ENST00000384836|ENSG00000207568|miRNA|hsa-mir-203 [Source:miRBase;Acc:MI0000283] ## {SimpF: oe = 0.84 0 CpG,rank = 1 -1 FirstEF} ## {ASMIR: hsa-mir-203-as} #mouseZ29p81 chromosome:12:113369053:113369207:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083640|ENSMUSG00000065574|miRNA|mmu-mir-203 [Source:miRBase;Acc:MI0000246] ## {SimpF: oe = 0.89 1 CpG} ## {ASMIR: mmu-mir-203-as} ========== sblock2905 (Antisense miRBase rno-mir-338-as) [miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock2905: 0.001 randfold humanZ62p89_sblock2905: 0.002 randfold mouseZ62p89_sblock2905: 0.002 #forester humanZ62p89_sblock2905: 0.84464 forester mouseZ62p89_sblock2905: 1 #identity: 92.44 sblock2905 TCAACAAAATCACTGATGCTG #rat_gr806056_libT1S1 21 11 sblock2905 TCAACAAAATCACTGATGC #rat_gr806054_libT1S1 19 7 sblock2905 TCAACAAAATCACTGATG #rat_gr806053_libT1S1 18 5 sblock2905 TCAACAAAATCACTGATGC #rat_gr806054_libT1S2 19 5 sblock2905 TCAACAAAATCACTGATGC #rat_gr806054_libT3S1 19 3 sblock2905 TCAACAAAATCACTGATGCT #rat_gr806055_libT1S1 20 3 sblock2905 ACAAAATCACTGATGCTG #rat_gr67166_libT1S1 18 3 sblock2905 TCAACAAAATCACTGATGCT #rat_gr806055_libT1S2 20 2 sblock2905 TCAACAAAATCACTGATGCTGGAGTC #rat_gr806058_libT1S1 26 2 sblock2905 TCAACAAAATCACTGATG #rat_gr806053_libT3S1 18 1 sblock2905 TCAACAAAATCACTGATG #rat_gr806053_libT3S2 18 1 sblock2905 TCAACAAAATCACTGATGC #rat_gr806054_libT3S2 19 1 sblock2905 TCAACAAAATCACTGATGC #rat_gr806054_libT5S1 19 1 sblock2905 TCAACAAAATCACTGATGCT #rat_gr806055_libT3S2 20 1 sblock2905 TCAACAAAATCACTGATGCT #rat_gr806055_libT5S1 20 1 sblock2905 TCAACAAAATCACTGATGCT #rat_gr806055_libT5S2 20 1 sblock2905 TCAACAAAATCACTGATGCTG #rat_gr806056_libT5S1 21 1 sblock2905 TCAACAAAATCACTGATGCTG #rat_gr806056_libT5S2 21 1 sblock2905 TCAACAAAATCACTGATGCTGG #rat_gr806057_libT1S1 22 1 sblock2905 TCAACAAAATCACTGATGCTGG #rat_gr806057_libT3S2 22 1 sblock2905 TCAACAAAATCACTGATGCTGG #rat_gr806057_libT5S2 22 1 sblock2905 TCAGCACCAGGATATTGTTGGG #rat_gr817572_libT1S1 22 3 sblock2905 TCAGCACCAGGATATTGT #rat_gr817568_libT1S1 18 2 sblock2905 TCAGCACCAGGATATTGTT #rat_gr817569_libT5S1 19 2 sblock2905 TCAGCACCAGGATATTGTTGGGG #rat_gr817573_libT1S1 23 2 sblock2905 TCAGCACCAGGATATTGTTGGGGA #rat_gr817574_libT1S1 24 2 sblock2905 TCAGCACCAGGATATTGT #rat_gr817568_libT1S2 18 1 sblock2905 TCAGCACCAGGATATTGT #rat_gr817568_libT3S2 18 1 sblock2905 TCAGCACCAGGATATTGT #rat_gr817568_libT4S2 18 1 sblock2905 TCAGCACCAGGATATTGTT #rat_gr817569_libT1S1 19 1 sblock2905 TCAGCACCAGGATATTGTT #rat_gr817569_libT3S2 19 1 sblock2905 TCAGCACCAGGATATTGTTG #rat_gr817570_libT1S2 20 1 sblock2905 TCAGCACCAGGATATTGTTGG #rat_gr817571_libT1S1 21 1 sblock2905 TCAGCACCAGGATATTGTTGGG #rat_gr817572_libT5S1 22 1 sblock2905 TCAGCACCAGGATATTGTTGGGG #rat_gr817573_libT3S2 23 1 sblock2905 TCAGCACCAGGATATTGTTGGGGA #rat_gr817574_libT1S2 24 1 sblock2905 --------------------GAGGCTGGCAGCTGCCCTCTTCAACAAAATCACTGATGCTGGAGTCA-CTGTGCACCCACTCAGCACCAGGATATTGTTGGGGAGGACGGCCTGGGCAGCGTCG--------------- humanZ62p89 GGGCCCGGCAGGCAGGTCGGGAGGCTGGCAGCTGCCCTCTTCAACAAAATCACTGATGCTGGAGTCGCCTGAGTCATCACTCAGCACCAGGATATTGTTGGAGAGGACAGCC-GTGCGGCGTCTGGGGCTGACGGGGCC mouseZ62p89 ------------------------------------CTCTTCAACAAAATCACTGATGCTGGAGTCA-CTGTGCACCCACTCAGCACCAGGATATTGTTGGGGAG---------------------------------- ****************************** *** * ************************ *** sblock2905 ----- ----------------------------------------------- -------------------------------------------------------- ----- #ENSRNOT00000005839 ENSRNOG00000004392 LOC690853 sblock2905 ----- ----------------------------------------------- -------------------------------------------------------- ----- #ENSRNOT00000040443 ENSRNOG00000004392 LOC690853 sblock2905 ..... .................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................... ..... #ENSRNOT00000053588 ENSRNOG00000035465 rno-mir-338 sblock2905 ((.((((.((((((.((((..((((((.(((.(((.((((.((((.. ..........)))))))).)))))).))))))..)))).)))).))..)))).)). 1.000 -47.90 # humanZ62p89 ((.((((.....(((.((.(((.((((((.((((.((((((((((((.(((.(((.((((.((((.....((....)))))))))).)))))).)))))))))))).)))). )).)))).))).)).))).)))).)) 0.940 -71.00 # mouseZ62p89 (((..((((((.(((.(((.((((.((((.. ..........)))))))).)))))).))))))..))) 0.998 -27.20 # #sblock2905 chromosome:10:109426975:109427077:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053588|ENSRNOG00000035465 ## Opposite_strand|Intronic_coding|ENSRNOT00000005839|ENSRNOG00000004392 ## ENSRNOG00000004392|protein_coding|LOC690853| ## ENSRNOG00000035465|miRNA|rno-mir-338|rno-mir-338 [Source:miRBase;Acc:MI0000618] ## {ASMIR: rno-mir-338-as} #humanZ62p89 chromosome:17:76714241:76714378:1 Opposite_strand|Intronic_coding|ENST00000326724|ENSG00000181409|protein_coding|Serine/threonine-protein kinase LMTK1 (EC 2.7.11.1)(Lemur tyrosine kinase 1)(Apoptosis-associated tyrosine kinase)(AATYK)(Brain apoptosis-associated tyrosine kinase)(CDK5-binding protein)(p35-binding protein)(p35BP) [Source:UniProtKB/Swiss-Prot;Acc:Q6ZMQ8] ## Opposite_strand|Boundary_non-coding|ENST00000390137|ENSG00000211563|miRNA|hsa-mir-338 [Source:miRBase;Acc:MI0000814] ## {Repeats: dust 0 class=dust} ## {ASMIR: hsa-mir-338-as} #mouseZ62p89 chromosome:11:119876090:119876157:1 Opposite_strand|Intronic_coding|ENSMUST00000064307|ENSMUSG00000025375|protein_coding|apoptosis-associated tyrosine kinase Gene [Source:MGI (curated);Acc:Aatk-001] ## Opposite_strand|Exonic_non-coding|ENSMUST00000083666|ENSMUSG00000065600|miRNA|mmu-mir-338 [Source:miRBase;Acc:MI0000619] ## {ASMIR: mmu-mir-338-as} ========== sblock6143 (Antisense miRBase rno-mir-9-1-as) [miRBaseNonMapped_lenNOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock6143: 0.001 randfold humanZ32p94_sblock6143: 0.001 randfold mouseZ51p94_sblock6143: 0.001 #forester humanZ32p94_sblock6143: 1 forester mouseZ51p94_sblock6143: 1 #identity: 100.00 sblock6143 TCATACAGCTAGATAACCAAAG #rat_gr822423_libT1S2 22 1 sblock6143 ATACAGCTAGATAACCAA #rat_gr207413_libT1S1 18 1 sblock6143 TTCGGTTATCTAGCTTTAT #rat_gr1124345_libT1S1 19 1 sblock6143 TTCGGTTATCTAGCTTTA #rat_gr1124344_libT1S2 18 1 sblock6143 GCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCCGCCTCCTGGC humanZ32p94 GCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCC---------- mouseZ51p94 ------------------------CTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAG------------------------- *********************************************************** sblock6143 ...............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............. #ENSRNOT00000053674 ENSRNOG00000035551 rno-mir-9-1 sblock6143 ((.(((....(((((((.((.(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).))..)))))))....))))) 0.980 -38.34 # humanZ32p94 ...........((((((.((.(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).))..)))))) 0.901 -32.84 # mouseZ51p94 ((((.((((((((((((.(((((..............))))).)))))))))))))))) 1.000 -23.24 # #sblock6143 chromosome:2:180293000:180293107:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053674|ENSRNOG00000035551 ## ENSRNOG00000035551|miRNA|rno-mir-9-1|rno-mir-9-1 [Source:miRBase;Acc:MI0000838] ## {ASMIR: rno-mir-9-1-as} #humanZ32p94 chromosome:1:154656747:154656844:1 Opposite_strand|Intronic_coding|ENST00000368244|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## Opposite_strand|Boundary_non-coding|ENST00000368242|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## Opposite_strand|Intronic_non-coding|ENST00000368243|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## {SimpF: rank = 1 -1 FirstEF,oe = 0.88 0 CpG} ## {ASMIR: hsa-mir-9-1-as} #mouseZ51p94 chromosome:3:88019481:88019628:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083570|ENSMUSG00000065504|miRNA|mmu-mir-9-1 [Source:miRBase;Acc:MI0000720] ## {SimpF: oe = 0.80 -1 CpG} ## {ASMIR: mmu-mir-9-1-as} ========== sblock6315 (Antisense miRBase rno-mir-9-2-as) [miRBaseNonMapped_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK] ========== #randfold sblock6315: 0.001 randfold humanZ39p94_sblock6315: 0.001 randfold mouseZ57p94_sblock6315: 0.001 #forester humanZ39p94_sblock6315: 1 forester mouseZ57p94_sblock6315: 1 #identity: 97.39 sblock6315 TTCGGTTATCTAGCTTTA #rat_gr1124344_libT1S2 18 1 sblock6315 TTCGGTTATCTAGCTTTAT #rat_gr1124345_libT1S1 19 1 sblock6315 ACACTCATACAGCTAGATAACCA #rat_gr75353_libT1S1 23 3 sblock6315 TCATACAGCTAGATAACCAAAG #rat_gr822423_libT1S2 22 1 sblock6315 ATACAGCTAGATAACCAA #rat_gr207413_libT1S1 18 1 sblock6315 --AGCACTCCTCGGTGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTCCCTCACAAGGCTGT----- humanZ39p94 ------------GGCGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTC------------------- mouseZ57p94 GGAACGTTCCTCGGTGACCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTCCCTCACAAGGCTGCCTTCC ** ** **************************************************************************************** sblock6315 ..... ..................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............. ..... #ENSRNOT00000053751 ENSRNOG00000035628 rno-mir-9-2 sblock6315 .(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).))).))) 1.000 -42.20 # humanZ39p94 .........(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).)))) 0.984 -34.80 # mouseZ57p94 ((((.((.(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).)))..)).)))) 0.935 -46.70 # #sblock6315 chromosome:2:12259488:12259605:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053751|ENSRNOG00000035628 ## ENSRNOG00000035628|miRNA|rno-mir-9-2|rno-mir-9-2 [Source:miRBase;Acc:MI0000840] ## {ASMIR: rno-mir-9-2-as} #humanZ39p94 chromosome:5:87998419:87998512:1 Opposite_strand|Boundary_non-coding|ENST00000384838|ENSG00000207570|miRNA|hsa-mir-9-2 [Source:miRBase;Acc:MI0000467] ## {ASMIR: hsa-mir-9-2-as} #mouseZ57p94 chromosome:13:83878393:83878517:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000083490|ENSMUSG00000065424|miRNA|mmu-mir-9-2 [Source:miRBase;Acc:MI0000157] ## {ASMIR: mmu-mir-9-2-as} ========== sblock6664 (Antisense miRBase rno-mir-219-1-as) [miRBaseNonMapped_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock6664: 0.001 randfold humanZ21p95_sblock6664: 0.013 randfold mouseZ30p95_sblock6664: 0.003 #forester humanZ21p95_sblock6664: 0.932594 forester mouseZ30p95_sblock6664: 1 #identity: 97.92 sblock6664 AGAATTGCGTTTGGACAA #rat_gr136318_libT1S1 18 1 sblock6664 GGACGTCCAGACGCAACTCTC #rat_gr585952_libT1S2 21 6 sblock6664 GGACGTCCAGACGCAACTCTC #rat_gr585952_libT5S2 21 2 sblock6664 GGACGTCCAGACGCAACTC #rat_gr585951_libT3S1 19 2 sblock6664 GGACGTCCAGACGCAACTCTCG #rat_gr585953_libT1S2 22 1 sblock6664 GGACGTCCAGACGCAACTCTCG #rat_gr585953_libT3S1 22 1 sblock6664 GACGTCCAGACGCAACTCTC #rat_gr498804_libT5S1 20 1 sblock6664 GGACGTCCAGACGCAACTCTC #rat_gr585952_libT3S2 21 1 sblock6664 GGACGTCCAGACGCAACTCTC #rat_gr585952_libT5S1 21 1 sblock6664 GGACGTCCAGACGCAACTC #rat_gr585951_libT1S2 19 1 sblock6664 GGACGTCCAGACGCAACTC #rat_gr585951_libT2S2 19 1 sblock6664 GGACGTCCAGACGCAACT #rat_gr585950_libT3S1 18 1 sblock6664 ----------------CTCCCCCTCGAGGTTTGGGGGCGGCGGCTCGGGACGTCCAGACGCAACTCTCGGCCGGAGCCAGAGACTCGAGAATTGCGTTTGGACAATCAGGAGCCGCGGCCCGGGACAGGGAGAG--------------- humanZ21p95 -----------------------------------------------GGACGTCCAGACTCAACTCTCGGCCGGAGCCATAGACTCGAGAATTGCGTTTGGACAATCA----------------------------------------- mouseZ30p95 GCGCTCCGCCCGGCCTCTCCCCCTCGAGGTTTGGGGGCGGCGGCTCGGGACGTCCAGACGCAACTCTCGGCCGGAGCCAGAGACTCGAGAATTGCGTTTGGACAATCAGGAGCCGCGGCCCGGGACGGGGAGAGAAGCGCATCGGAGGC ************ ******************* **************************** sblock6664 ..... ..<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...... ..... #ENSRNOT00000053776 ENSRNOG00000035653 rno-mir-219-1 sblock6664 (((.((((....((((.((.((.(((((((..((.((((((((((((.(((((((....)))........)))).))))))))))))..))..))))))).)))).)))))))).))) 0.820 -63.20 # humanZ21p95 ....((((((((.(((.(((((((....)))........)))).))).))))))))..... 1.000 -21.70 # mouseZ30p95 ((.(((((....((((((((((......((((.((.((.(((((((..((.((((((((((((.(((((((....)))........)))).))))))))))))..))..))))))).)))).))))))))))))..))....))))))) 0.815 -80.30 # #sblock6664 chromosome:20:4967795:4967912:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053776|ENSRNOG00000035653 ## ENSRNOG00000035653|miRNA|rno-mir-219-1|rno-mir-219-1 [Source:miRBase;Acc:MI0000959] ## {SimpF: oe = 0.97 -1 CpG} ## {ASMIR: rno-mir-219-1-as} #humanZ21p95 chromosome:6:33283564:33283721:-1 Opposite_strand|Boundary_non-coding|ENST00000362166|ENSG00000199036|miRNA|hsa-mir-219-1 [Source:miRBase;Acc:MI0000296] ## {SimpF: rank = 1 1 FirstEF,oe = 1.00 0 CpG} ## {ASMIR: hsa-mir-219-1-as} #mouseZ30p95 chromosome:17:34161910:34162058:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083621|ENSMUSG00000065555|miRNA|mmu-mir-219-1 [Source:miRBase;Acc:MI0000702] ## {SimpF: oe = 0.97 1 CpG, -1 Eponine} ## {ASMIR: mmu-mir-219-1-as} ========== sblock7836 (Antisense miRBase rno-mir-219-2-as) [miRBaseNonMapped_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK] ========== #randfold sblock7836: 0.010 randfold humanZ3p96_sblock7836: 0.026 randfold mouseZ2p96_sblock7836: 0.040 #forester humanZ3p96_sblock7836: 1 forester mouseZ2p96_sblock7836: 0.945826 #identity: 100.00 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT4S2 21 3 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT5S1 22 3 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT4S2 19 2 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT3S2 21 2 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT1S1 22 2 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT4S1 22 2 sblock7836 AGATGTCCAGCCACAATT #rat_gr148050_libT4S2 18 1 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT1S1 19 1 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT1S2 19 1 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT2S2 19 1 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT3S1 19 1 sblock7836 AGATGTCCAGCCACAATTC #rat_gr148051_libT5S2 19 1 sblock7836 AGATGTCCAGCCACAATTCT #rat_gr148052_libT2S1 20 1 sblock7836 AGATGTCCAGCCACAATTCT #rat_gr148052_libT3S2 20 1 sblock7836 AGATGTCCAGCCACAATTCT #rat_gr148052_libT4S2 20 1 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT1S1 21 1 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT2S1 21 1 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT2S2 21 1 sblock7836 AGATGTCCAGCCACAATTCTC #rat_gr148053_libT5S2 21 1 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT1S2 22 1 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT2S2 22 1 sblock7836 AGATGTCCAGCCACAATTCTCG #rat_gr148054_libT5S2 22 1 sblock7836 AGATGTCCAGCCACAATTCTCGG #rat_gr148055_libT4S2 23 1 sblock7836 AGATGTCCAGCCACAATTCTCGGT #rat_gr148056_libT5S2 24 1 sblock7836 GATGTCCAGCCACAATTC #rat_gr523320_libT4S2 18 1 sblock7836 GATGTCCAGCCACAATTCTCG #rat_gr523321_libT1S2 21 1 sblock7836 AGAATTGCGTTTGGACAA #rat_gr136318_libT1S1 18 1 sblock7836 AGACCGGAGCTCAACCACAGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCAGTGGTGAAGCCCCTGAGTT humanZ3p96 ------------------AGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCA------------------- mouseZ2p96 ------------------AGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATC-------------------- ************************************************************** sblock7836 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060969 ENSRNOG00000026604 Ceecam1 sblock7836 ........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...... #ENSRNOT00000053575 ENSRNOG00000035452 rno-mir-219-2 sblock7836 .((((((.(((..(((((.(((((((((...((((((((((....)))............)))))))...))))))).)).)))))..)))..))).))) 0.740 -33.40 # humanZ3p96 .(((((((((...((((((((((....)))............)))))))...))))))).)). 0.744 -17.80 # mouseZ2p96 ...(((((((...((((((((((....)))............)))))))...)))))))... 0.744 -16.80 # #sblock7836 chromosome:3:8833902:8834001:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053575|ENSRNOG00000035452 ## Same_strand|Boundary_non-coding|ENSRNOT00000035930|ENSRNOG00000026604 ## Same_strand|Intronic_non-coding|ENSRNOT00000060969|ENSRNOG00000026604 ## ENSRNOG00000035452|miRNA|rno-mir-219-2|rno-mir-219-2 [Source:miRBase;Acc:MI0000960] ## ENSRNOG00000026604|protein_coding|Ceecam1|Glycosyltransferase 25 family member 3 (Cerebral endothelial cell adhesion molecule 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5U309] ## {SimpF: oe = 0.79 1 CpG} ## {ASMIR: rno-mir-219-2-as} #humanZ3p96 chromosome:9:130194696:130194835:1 Opposite_strand|Boundary_non-coding|ENST00000385220|ENSG00000207955|miRNA|hsa-mir-219-2 [Source:miRBase;Acc:MI0000740] ## {SimpF: oe = 0.85 0 CpG,rank = 4 1 FirstEF,rank = 1 1 FirstEF} ## {ASMIR: hsa-mir-219-2-as} #mouseZ2p96 chromosome:2:29701129:29701268:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083551|ENSMUSG00000065485|miRNA|mmu-mir-219-2 [Source:miRBase;Acc:MI0000741] ## {SimpF: oe = 0.79 1 CpG} ## {ASMIR: mmu-mir-219-2-as} ========== sblock7914 (Antisense miRBase rno-mir-130a-as) [miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK] ========== #randfold sblock7914: 0.002 randfold humanZ12p96_sblock7914: 0.004 randfold mouseZ13p96_sblock7914: 0.029 #forester humanZ12p96_sblock7914: 0.627099 forester mouseZ13p96_sblock7914: 0.584653 #identity: 94.00 sblock7914 TGCCCTTTTAACATTGCACTGC #rat_gr967020_libT2S1 22 1 sblock7914 TGCCCTTTTAACATTGCACTGC #rat_gr967020_libT3S2 22 1 sblock7914 TAGCACAATGTGAAAAGAGC #rat_gr765260_libT3S1 20 9 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT3S2 18 6 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT3S1 19 3 sblock7914 TAGCACAATGTGAAAAGAGC #rat_gr765260_libT4S2 20 3 sblock7914 TAGCACAATGTGAAAAGAGCTC #rat_gr765261_libT4S2 22 3 sblock7914 TAGCACAATGTGAAAAGAGCTCC #rat_gr765262_libT1S1 23 3 sblock7914 TAGCACAATGTGAAAAGAGCTCC #rat_gr765262_libT3S1 23 3 sblock7914 TAGCACAATGTGAAAAGAGCTCC #rat_gr765262_libT3S2 23 3 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT1S1 18 2 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT1S2 18 2 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT3S1 18 2 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT4S1 18 2 sblock7914 TAGCACAATGTGAAAAGA #rat_gr765258_libT4S2 18 2 sblock7914 TAGCACAATGTGAAAAGAGC #rat_gr765260_libT3S2 20 2 sblock7914 AGCACAATGTGAAAAGAGCTCC #rat_gr150211_libT3S1 22 2 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT1S1 19 1 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT1S2 19 1 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT2S2 19 1 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT3S2 19 1 sblock7914 TAGCACAATGTGAAAAGAG #rat_gr765259_libT4S2 19 1 sblock7914 TAGCACAATGTGAAAAGAGC #rat_gr765260_libT4S1 20 1 sblock7914 TAGCACAATGTGAAAAGAGCTC #rat_gr765261_libT2S2 22 1 sblock7914 TAGCACAATGTGAAAAGAGCTC #rat_gr765261_libT4S1 22 1 sblock7914 TAGCACAATGTGAAAAGAGCTCC #rat_gr765262_libT4S2 23 1 sblock7914 AGCACAATGTGAAAAGAGCTC #rat_gr150210_libT3S1 21 1 sblock7914 GGCCGATGCCCTTTTAACATTGCACTGCTCGGTACACGTGTAGACAGTAGCACAATGTGAAAAGAGCTCCGGCC------ humanZ12p96 GGCCAATGCCCTTTTAACATTGCACTGCTAGTGACAGGTGCAGACAGTAGCACAATGTGAAAAGAGCTCTGGCCAGCAGC mouseZ13p96 -----ATGCCCTTTTAACATTGCACTGCTCGGTACACGT-TAGACAGTAGCACAATGTGAAAAGAGCTC----------- ************************ * *** ** **************************** sblock7914 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<< #ENSRNOT00000053693 ENSRNOG00000035570 rno-mir-130a sblock7914 (((((..((.(((((.((((((..(((((...(((....)))...)))))..)))))).))))).))..))))) 1.000 -29.70 # humanZ12p96 (((((..((.(((((.((((((...(((((.((...........)).))))))))))).))))).))..)))))...... 0.952 -29.60 # mouseZ13p96 ..((.(((((.(((((((((((((((.....)). .)).)))).)))..)))).))))).)).. 0.999 -16.80 # #sblock7914 chromosome:3:67949601:67949674:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000053693|ENSRNOG00000035570 ## ENSRNOG00000035570|miRNA|rno-mir-130a|rno-mir-130a [Source:miRBase;Acc:MI0000903] ## {ASMIR: rno-mir-130a-as} #humanZ12p96 chromosome:11:57165248:57165327:-1 Opposite_strand|Exonic_non-coding|ENST00000385274|ENSG00000208009|miRNA|hsa-mir-130a [Source:miRBase;Acc:MI0000448] ## {ASMIR: hsa-mir-130a-as} #mouseZ13p96 chromosome:2:84581247:84581360:1 Opposite_strand|Boundary_non-coding|ENSMUST00000083550|ENSMUSG00000065484|miRNA|mmu-mir-130a [Source:miRBase;Acc:MI0000156] ## {ASMIR: mmu-mir-130a-as} ========== block210143 (miRBaseNonMapped rno-mir-297) [miRBaseNonMapped_Multihit_randfoldOK] ========== #randfold block210143: 0.001 #forester #identity: 0.00 block210143 ATGTATGTGTGCATGTATGCATG #rat_gr236548_libMirbase_rno-miR-297 23 1 block210143 TGCATGTATGCATGTATGTATGT #rat_gr963129_libT3S1 23 1 block210143 atgcatgcatgtatgcatgtgtgaatgtatgcatgtgtgcatgtatgcatgtgtgcatgtatgtgtgtgcatgcatgcatgtATGTATGTGTGCATGTATGCATGTATGTATGTgtgcat ************************************************************************************************************************ block210143 (((((((((((((((((((((((.(((((((((((..((((((((((((((..(((((....)))))..))))))))))))))..))))))))))).))))))))))))))))))))))) 1.000 -73.60 # #block210143 chromosome:12:6886770:6886889:1 intergenic ## {Repeats: (TATG)n 2 179 1 class=Simple_repeat,(TATG)n 103 135 1 class=Simple_repeat,trf 44 76 0 class=trf,trf 55 87 0 class=trf,dust 6886792 6886824 0 class=dust} ========== block675545 (Antisense miRBase rno-mir-466b-2-as) [miRBaseNonMapped_Multihit_randfoldOK] ========== #randfold block675545: 0.001 #forester #identity: 0.00 block675545 TACACACACACATATACACAC #rat_gr741049_libT1S2 21 1 block675545 ttgccacttgtgtgtgtgtgcttgcgtatatgtgtatgtgtgtatgtatatgtataatcatatacacacatggacaTACACACACACATATACACACatgcacatacataggggcag ********************************************************************************************************************* block675545 ------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 block675545 .......................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................... #ENSRNOT00000063096 ENSRNOG00000041343 rno-mir-466b-2 block675545 .((((.((((((((((((((..((.((((((((((..((((((((((.(((((..............))))).)))))))))))))))))))).))..)))))))))))))))))). 1.000 -57.44 # #block675545 chromosome:17:79288516:79288632:1 Opposite_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000063096|ENSRNOG00000041343 ## ENSRNOG00000041343|miRNA|rno-mir-466b-2|rno-mir-466b-2 [Source:miRBase;Acc:MI0006113] ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (CA)n 1 50 1 class=Simple_repeat,dust 79288591 79288612 0 class=dust,trf 12 33 0 class=trf,trf 15 36 0 class=trf,(CA)n 18 39 1 class=Simple_repeat} ## {ASMIR: rno-mir-466b-2-as} ========== block675546 (Antisense miRBase rno-mir-466b-1-as) [miRBaseNonMapped_rep_Multihit_randfoldOK] ========== #randfold block675546: 0.001 #forester #identity: 0.00 block675546 GCACGTGTGTGTATGTGTGT #rat_gr530740_libT2S2 20 1 block675546 GCACGTGTGTGTATGTGTGT #rat_gr530740_libT5S2 20 1 block675546 cattcctgtgtgtgtgcttGCACGTGTGTGTATGTGTGTgtgtatgtatattcatatacacacatggacatacacacacacatatatacacatgcaaatatatagagacatcacatgaat ************************************************************************************************************************ block675546 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 block675546 .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................... #ENSRNOT00000062970 ENSRNOG00000041217 rno-mir-466b-1 block675546 .((((.((((((((((.(((((.((((((((((((((((((((((((....((((........)))))))))))))))))))))))))))).))))).)))))).......)))).)))) 0.960 -52.61 # #block675546 chromosome:17:79291556:79291675:1 Opposite_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000062970|ENSRNOG00000041217 ## ENSRNOG00000041217|miRNA|rno-mir-466b-1|rno-mir-466b-1 [Source:miRBase;Acc:MI0006112] ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TA)n 1 80 1 class=Simple_repeat,dust 79291570 79291590 0 class=dust,RMER12 850 851 -1 class=LTR/ERVK,ID_B1 -17 207 -1 class=SINE} ## {ASMIR: rno-mir-466b-1-as} ========== sblock11350 (Antisense miRBase rno-mir-151-as) [miRBaseNonMapped_rep_lenNOK_multiarm_DicerNOK_loopOverlap_randfoldOK] ========== #randfold sblock11350: 0.001 randfold humanZ26p84_sblock11350: 0.001 randfold mouseZ37p84_sblock11350: 0.001 #forester humanZ26p84_sblock11350: 0.933203 forester mouseZ37p84_sblock11350: 1 #identity: 89.64 sblock11350 TCCCTGTCCTCAAGGAGC #rat_gr860882_libT3S1 18 2 sblock11350 ATACTAGACTGTGAGCTCCTCGA #rat_gr208917_libT5S2 23 1 sblock11350 ACTAGACTGTGAGCTCCT #rat_gr115739_libT1S2 18 1 sblock11350 ----------------CGG----GAGGTGAGTATGACGATCCCTGTCCTCAAGGAGCCTCAGTCTAGTA-GGGAGGAGACATACTAGACTGTGAGCTCCTCGAGGGCAGG-AAAGCGCTCCA-TCATCTGTGCTCCA-TGCCCA---------------- humanZ26p84 GGCCTGGAGGTTTGGGCAACACCGAGGTGAGTATGACCATCCCTGTCCTCAAGGAGCTTCAGTCTAGTAGGGGATGAGACATACTAGACTGTGAGCTCCTCGAGGGCAGGAAAAGTGTTTTAGTCATCTTTGCCCCAGTGACTAGCACCAGGCT------ mouseZ37p84 TGCACTGTGCTCCTGGCAG----GAGGTGAGTATGACGATCCCTGTCCTCAAGGAGCCTCAGTCTAGTA-GGGAGGAGACATACTAGACTGTGAGCTCCTCGAGGGCAGG-AAAGCGCTCCA-TCATCTGTGCTCCA-TGCCCAGGACCTGAGCAGTCCA * ************** ******************* *********** **** *********************************** **** * * * ****** *** *** ** * * sblock11350 ----- --- ---------------------------------------------- ---------------------------------------- ----------- -------------- ------ ----- #ENSRNOT00000011219 ENSRNOG00000007916 Ptk2 sblock11350 ----- --- ---------------------------------------------- ---------------------------------------- ----------- -------------- ------ ----- #ENSRNOT00000046362 ENSRNOG00000007916 Ptk2 sblock11350 ..... <<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<... .............. ...... ..... #ENSRNOT00000053580 ENSRNOG00000035457 rno-mir-151 sblock11350 .(( (....((((((((((...(((((((((.((((((..(((((((((( ...........))))))))))...)))))).))))))))) ....)).)).. ......)))))).. ..))). 0.580 -55.40 # humanZ26p84 (((((((.((((.(((((.....(((((((.((.(((....(((((((((.((((((((((((((((((............)))))))))).)))))))).)))))))))......))).)).))))))))))))....))))....))))))) 0.919 -76.80 # mouseZ37p84 ((.(((((..((((((((( (((((((....((((...(((((((((.((((((..(((((((((( ...........))))))))))...)))))).))))))))) ....)).)).. )))).....)))). )))).)))).....))))).)) 0.967 -69.00 # #sblock11350 chromosome:7:110979296:110979415:1 Opposite_strand|Intronic_coding|ENSRNOT00000011219|ENSRNOG00000007916 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000010896|ENSRNOG00000007916 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053580|ENSRNOG00000035457 ## ENSRNOG00000035457|miRNA|rno-mir-151|rno-mir-151 [Source:miRBase;Acc:MI0000647] ## ENSRNOG00000007916|protein_coding|Ptk2|Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK). [Source:UniProtKB/Swiss-Prot;Acc:O35346] ## {Repeats: L2 -94 3325 -1 class=LINE,L2 3255 3284 1 class=LINE,L2 3149 3169 1 class=LINE/L2,L2 3180 3180 -1 class=LINE/L2,L2 3202 3219 -1 class=LINE/L2} ## {ASMIR: rno-mir-151-as} #humanZ26p84 chromosome:8:141811822:141811975:1 Opposite_strand|Boundary_non-coding|ENST00000342207|ENSG00000169398|protein_coding|Focal adhesion kinase 1 (FADK 1)(EC 2.7.10.2)(pp125FAK)(Protein-tyrosine kinase 2) [Source:UniProtKB/Swiss-Prot;Acc:Q05397] ## Opposite_strand|Intronic_coding|ENST00000354438|ENSG00000169398|protein_coding|Focal adhesion kinase 1 (FADK 1)(EC 2.7.10.2)(pp125FAK)(Protein-tyrosine kinase 2) [Source:UniProtKB/Swiss-Prot;Acc:Q05397] ## {Repeats: L2 -1 class=LINE/L2,L2 1 class=LINE/L2} ## {ASMIR: hsa-mir-151-as} #mouseZ37p84 chromosome:15:73085208:73085359:1 Opposite_strand|Intronic_non-coding|ENSMUST00000068756|ENSMUSG00000022607|protein_coding|PTK2 protein tyrosine kinase 2 Gene [Source:MGI Symbol;Acc:MGI:95481] ## Opposite_strand|Intronic_coding|ENSMUST00000080736|ENSMUSG00000022607|protein_coding|PTK2 protein tyrosine kinase 2 Gene [Source:MGI Symbol;Acc:MGI:95481] ## Opposite_strand|Boundary_non-coding|ENSMUST00000083678|ENSMUSG00000065612|miRNA|mmu-mir-151 [Source:miRBase;Acc:MI0000173] ## {Repeats: L2 -1 class=LINE/L2,L2 1 class=LINE/L2} ## {ASMIR: mmu-mir-151-as} ========== sblock5677 (Antisense miRBase rno-mir-378-as) [miRBaseNonMapped_rep_lenNOK_multiarm_DicerNOK_5varHIGH_randfoldOK] ========== #randfold sblock5677: 0.001 randfold humanZ33p93_sblock5677: 0.001 randfold mouseZ58p93_sblock5677: 0.001 #forester humanZ33p93_sblock5677: 0.983304 forester mouseZ58p93_sblock5677: 1 #identity: 99.27 sblock5677 TCCACTCAGGCCTTCTGAC #rat_gr830650_libT2S2 19 1 sblock5677 TCCACTCAGGCCTTCTGACTC #rat_gr830651_libT4S2 21 1 sblock5677 GCCTTCTGACTCCAAGTCCAGT #rat_gr560374_libT5S2 22 1 sblock5677 CTGACTCCAAGTCCAGTG #rat_gr437725_libT2S1 18 1 sblock5677 CTGACTCCAAGTCCAGTG #rat_gr437725_libT5S1 18 1 sblock5677 ACACAGGACCTGGAGTCAGGAGC #rat_gr72884_libT5S1 23 2 sblock5677 --------------------AGCGGGGAAGGTGACTCCACTCAGGCCTTCTGACTCCAAGTCCAGTGCTATTTCGAGGTAACACACAGGACCTGGAGTCAGGAGCCCTGGGTGGCTCTGTCACCCCCTGGCTG----------- humanZ33p93 -----------------------------------TCCACTCAGGCCTTCTGACTCCAAGTCCAGTGCTATTTCTAGGTAACACACAGGACCTGGAGTCAGGAGCCCTGGGTGGC----------------------------- mouseZ58p93 CCAGGATCACCCAGCCAGAGAGCGGGGAAGGTGACTCCACTCAGGCCTTCTGACTCCAAGTCCAGTGCTATTTCGAGGTAACACACAGGACCTGGAGTCAGGAGCCCTGGGTGGCTCTGTCACCCCCTGGCTGAGTGGTCGTGG *************************************** **************************************** sblock5677 ----- ----------------------------------------------------------------------------------------------------------------- ----- #ENSRNOT00000023661 ENSRNOG00000017503 Ppargc1b sblock5677 ..... ......................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................... ..... #ENSRNOT00000053640 ENSRNOG00000035517 rno-mir-378 sblock5677 (((.(((..((((((.(((((((((.((((((((((((.((((.(((.((((....)))).)))...)))).)))))))))))).)))))))))....)))))).))).))). 1.000 -66.80 # humanZ33p93 .(((((((((.((((((((((((.((((.(((.((((....)))).)))...)))).)))))))))))).))))))))). 1.000 -47.90 # mouseZ58p93 (((.((((((.(((((.......((((..((((((.(((((((((.((((((((((((.((((.(((.((((....)))).)))...)))).)))))))))))).)))))))))....))))))))))))))).)))))).))) 0.991 -84.41 # #sblock5677 chromosome:18:57377783:57377895:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000053640|ENSRNOG00000035517 ## Opposite_strand|Intronic_coding|ENSRNOT00000023661|ENSRNOG00000017503 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053640|ENSRNOG00000035517 ## ENSRNOG00000017503|protein_coding|Ppargc1b|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta) (PPARGC-1-beta) (PGC-1-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q811R2] ## ENSRNOG00000035517|miRNA|rno-mir-378|rno-mir-378 [Source:miRBase;Acc:MI0003719] ## {Repeats: MIR 27 50 1 class=SINE/MIR,MIR -62 146 -1 class=SINE,MIR 30 62 -1 class=SINE/MIR,MIR 20 149 1 class=SINE} ## {ASMIR: rno-mir-378-as} #humanZ33p93 chromosome:5:149092536:149092688:-1 Opposite_strand|Boundary_non-coding|ENST00000403750|ENSG00000155846|protein_coding|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta)(PPARGC-1-beta)(PGC-1-beta)(PGC-1-related estrogen receptor alpha coactivator) [Source:UniProtKB/Swiss-Prot;Acc:Q86YN6] ## Opposite_strand|Intronic_coding|ENST00000309241|ENSG00000155846|protein_coding|Peroxisome proliferator-activated receptor gamma coactivator 1-beta (PPAR-gamma coactivator 1-beta)(PPARGC-1-beta)(PGC-1-beta)(PGC-1-related estrogen receptor alpha coactivator) [Source:UniProtKB/Swiss-Prot;Acc:Q86YN6] ## {Repeats: MIRb 1 class=SINE/MIR,MIRb -1 class=SINE/MIR} ## {SimpF: rank = 1 -1 FirstEF} ## {ASMIR: hsa-mir-378-as} #mouseZ58p93 chromosome:18:61557447:61557590:1 Opposite_strand|Intronic_coding|ENSMUST00000063307|ENSMUSG00000033871|protein_coding|peroxisome proliferative activated receptor, gamma, coactivator 1 beta Gene [Source:MGI (curated);Acc:Ppargc1b-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000083601|ENSMUSG00000065535|miRNA|mmu-mir-378 [Source:miRBase;Acc:MI0000795] ## {Repeats: MIR -1 class=SINE/MIR,MIRb 1 class=SINE/MIR} ## {ASMIR: mmu-mir-378-as}