miR-Intess™

other non-annotated miRBase miRNAs

miRBaseNonMapped_lenNOK_randfoldOK (13 loci)

rno-mir-324-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-324-as 3arm	1	0	0	1	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-324-as 3arm	0.000	0	0	0.000	0	0	0	0	0	0

block25492 (Antisense miRBase rno-mir-324-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-324-as

0.008

no

no

0.61/0.61

18/18/0.00

0.5

0.5

2

0

2

0

31

1

3arm

1

nd

0.28

3

2

2

na

na

Families

Member of family miR-365 (seed AAUGCCC): rno-mir-365, rno-mir-324

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AUGCCCU---------------------------------------------------------	1	novel
seed	----------------------------------------------------------------------------------AAUGCCC----------------------------------------------------------	1	miR-365
		len	cloning frequencies
			T1S1	T2S2
	---------------------------------------------------------------------------------CAATGCCCTAGGGGATGC------------------------------------------------	18	1	-
	----------------------------------------------------------------------------------AATGCCCTAGGGGATGCG-----------------------------------------------	18	-	1
rat	--------------TTCTTCACAGTTGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGAGGAGGCATAGTCAGTTCGGCTTCTG----GAGAG------------
human	------------CTTTCTTCCCAGTCGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGGGGAGGCATAGTCAGCTCAGCTTCTGCGAAGAGAG------------
mouse	GGAGCCCTATGGCTTTCTTCACAGTTGGGTCAGACTACAACCCCCAGCAGCACCTGGGGCAGTGGGTCTCCAGCTTTACACCAATGCCCTAGGGGATGCGAGGAGGCATAGTCAGTTC-TCTTCTG----GAGGGTGGTGCTGCTCT
	****** **** ************************************************************************** ************** **  ******    *** *
	+++++              ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++    +++++            +++++	ENSRNOT00000024973 ENSRNOG00000018114 Acadvl
	+++++              ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++    +++++            +++++	ENSRNOT00000056796 ENSRNOG00000018114 Acadvl
	.....              ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........    .....            .....	ENSRNOT00000053642 ENSRNOG00000035519 rno-mir-324
rat	.((((((.(((((((...(((((...((((..(((...(((((((((.(((...............))).)))))))))...)))..)).))..)))))..)))))))..))    )))).	1.000 -47.66
human	((((((((.(((..((((..(((((...(((((.(((...(((((((((.(((...............))).)))))))))...))).))).))..))))).)))).....))).))))))))	0.984 -54.46
mouse	(((((..(((.((((((....(((..(((...(((((...((((..(((...(((((((((.(((...............))).)))))))))...)))..)).))..)))))....) ))..)))    )))))).)))..)))))	0.951 -55.86

rat	chromosome:10:56858022:56858138:-1	Same_strand|Intronic_coding|ENSRNOT00000056796|ENSRNOG00000018114 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053642|ENSRNOG00000035519 ## ENSRNOG00000035519|miRNA|rno-mir-324|rno-mir-324 [Source:miRBase;Acc:MI0000594] ## ENSRNOG00000018114|protein_coding|Acadvl|Very long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.-) (VLCAD). [Source:UniProtKB/Swiss-Prot;Acc:P45953] ## {ASMIR: rno-mir-324-as}
human	chromosome:17:7067320:7067442:1	Same_strand|Intronic_coding|ENST00000322910|ENSG00000072778|protein_coding|Very long-chain specific acyl-CoA dehydrogenase, mitochondrial Precursor (VLCAD)(EC 1.3.99.-) [Source:UniProtKB/Swiss-Prot;Acc:P49748] ## Opposite_strand|Boundary_non-coding|ENST00000362183|ENSG00000199053|miRNA|hsa-mir-324 [Source:miRBase;Acc:MI0000813] ## {ASMIR: hsa-mir-324-as}
mouse	chromosome:11:69825520:69825661:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000019362|ENSMUSG00000020888|protein_coding|dishevelled 2, dsh homolog (Drosophila) Gene [Source:MGI (curated);Acc:Dvl2-001] ## Opposite_strand|Exonic_non-coding|ENSMUST00000102575|ENSMUSG00000020888|protein_coding|dishevelled 2, dsh homolog (Drosophila) Gene [Source:MGI (curated);Acc:Dvl2-001] ## Same_strand|Intronic_coding|ENSMUST00000102574|ENSMUSG00000018574|protein_coding|acyl-Coenzyme A dehydrogenase, very long chain Gene [Source:MGI (curated);Acc:Acadvl-002] ## {ASMIR: mmu-mir-324-as}

rno-mir-193-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-193-as 3arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-193-as 3arm	0	0	0	0	0	0	0	0	0.000	0

block30169 (Antisense miRBase rno-mir-193-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-193-as

0.002

no

no

0.58/0.58

19/19/0.00

0.0

0.0

1

0

1

0

31

2

3arm

1

nd

0.26

2

1

1

na

na

		reads	miRBase family seed
seed	---------------------------------------------------------------UCUUGCC------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	--------------------------------------------------------------ATCTTGCCCGCAAAGACCC-------------------------------	19	1
rat	GAAAATGCCGGTCCTGGGAGCCGAGGACTGGGACTTTGTAGGCCAGTTGAACTGACACCCTCATCTTGCCCGCAAAGACCCAGCTCTCAGCTCCCGTCCGCCTTGGAGTTCG
mouse	-----------------------------GGGACTTTGTAGGCCAGTTGAACTGACACTCTCATCTTGCCCGCAAAGACCC-------------------------------
	***************************** **********************
	....................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................	ENSRNOT00000053781 ENSRNOG00000035658 rno-mir-193
rat	(((....(((((..(((((((.(((..(((((.(((((..(((.((.(((..........))).)).)))..))))).)))))..))).)))))))...)))..))..))).	0.990 -50.70
mouse	(((.(((((..(((.((.(((..........))).)).)))..))))).)))	1.000 -18.90

rat	chromosome:10:65901037:65901148:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053781|ENSRNOG00000035658 ## ENSRNOG00000035658|miRNA|rno-mir-193|rno-mir-193 [Source:miRBase;Acc:MI0000936] ## {ASMIR: rno-mir-193-as}
mouse	chromosome:11:79525427:79525578:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083461|ENSMUSG00000065395|miRNA|mmu-mir-193 [Source:miRBase;Acc:MI0000235] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: mmu-mir-193-as}

rno-mir-142-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-142-as 3arm	0	0	1	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-142-as 3arm	0	0	0.000	0	0	0	0	0	0	0

block35130 (Antisense miRBase rno-mir-142-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-142-as

0.001

no

no

0.37/0.37

19/19/0.00

0.0

0.0

1

0

1

0

32

4

3arm

1

nd

0.05

1

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------------GCUUUCU------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	---------------------------------------------------------------------------------------TGCTTTCTACTTTATGGGT-------------------------------------------------------	19	1
rat	--------------------TCTCCGAAGCCCACAGTACACTCATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGTGACTGCACTGTCTGTCTGTCTGTCCACGGGGA-----------------------
human	-------------------------------------------ATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGT-------------------------------------------------------
mouse	GGGGCCGCGGCGTGGCGTGGTCTCCGAAGCCCACAGTGCACTCATCCATAAAGTAGGAAACACTACACCCTCCAGTGCTGTTAGTAGTGCTTTCTACTTTATGGGTGACTGCA----CTGTCTGTCTGTCCACGGGGATTCTTCAGGCCACCTGCTTTTCT
	***************************************************************
	.....                    ...........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................                       .....	ENSRNOT00000053756 ENSRNOG00000035633 rno-mir-142
	<<<<<                    <<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........................................................................................                       .....	ENSRNOT00000046668 ENSRNOG00000007957 Bzrap1
rat	((((((..((..(((((.((.((((((((((((((((((.((((((.................)))))).)))))))))))))))))).)).)))))..))...........))))))	0.520 -44.65
human	((((((((((((((((.((((((.................)))))).))))))))))))))))	1.000 -26.63
mouse	((((..((((.(((((.(((((((((.((...((((((((.((((((((((((((((((.((((((.................)))))).)))))))))))))))))).))))    ))))....)).....)))))))....)).)))))))))..))))	0.941 -72.53

rat	chromosome:10:76049260:76049377:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053756|ENSRNOG00000035633 ## ENSRNOG00000035633|miRNA|rno-mir-142|rno-mir-142 [Source:miRBase;Acc:MI0000915] ## {ASMIR: rno-mir-142-as}
human	chromosome:17:53763561:53763718:1	Opposite_strand|Boundary_non-coding|ENST00000384835|ENSG00000207567|miRNA|hsa-mir-142 [Source:miRBase;Acc:MI0000458] ## {ASMIR: hsa-mir-142-as}
mouse	chromosome:11:87570315:87570471:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083486|ENSMUSG00000065420|miRNA|mmu-mir-142 [Source:miRBase;Acc:MI0000167] ## {ASMIR: mmu-mir-142-as}

rno-mir-208-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-208-as 3arm	4	3	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-208-as 3arm	0.000	0.000	0	0	0	0	0	0	0	0

block485376 (Antisense miRBase rno-mir-208-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-208-as

0.003

no

no

0.53/0.57

18/22/0.43

0.1

1.4

7

0

2

0

29

5

3arm

1

nd

0.17

2

7

2

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------------UAACCCG-------------------------------------------	6	novel
seed	-------------------------------------------------------------------AACCCGG------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	-----------------------------------------------------------------ATAACCCGGGCCAAAAGCT--------------------------------	19	2	1
	-----------------------------------------------------------------ATAACCCGGGCCAAAAGCTCAC-----------------------------	22	1	1
	-----------------------------------------------------------------ATAACCCGGGCCAAAAGC---------------------------------	18	1	-
	------------------------------------------------------------------TAACCCGGGCCAAAAGCTCAC-----------------------------	21	-	1
rat	GGCTGAGAGACGATAGCTCCTCTGACCAACAAGCTTTTTGCTCGTCTTATACGTGAGAGTCAGGTATAACCCGGGCCAAAAGCTCACCCGTCAAAGGAAGTAAGCAAGGGTCAGCC
human	----------------------------ACAAGCTTTTTGCTCGTCTTATACGTGAGCATCAGGTATAACCCGGGCCAAAAGCTCGC-----------------------------
mouse	----------------------------ACAAGCTTTTTGCTCGTCTTATACGTGAGTGTCAGGTATAACCCGGGCCAAAAGCTCAC-----------------------------
	*****************************  ************************** *
	------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000023302 ENSRNOG00000025757 Myh6
	.....................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................	ENSRNOT00000053706 ENSRNOG00000035583 rno-mir-208
rat	((((((.........((((((.((((.....(((((((.(((((..((((((.((.....)).))))))..))))).))))))).....)))).)))).)).........))))))	0.990 -43.57
human	...(((((((.(((((..((((((.((.....)).))))))..))))).)))))))...	1.000 -24.30
mouse	...(((((((.(((((..((((((.((.....)).))))))..))))).)))))))...	1.000 -24.30

rat	chromosome:15:33051941:33052056:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053706|ENSRNOG00000035583 ## Opposite_strand|Intronic_coding|ENSRNOT00000023302|ENSRNOG00000025757 ## ENSRNOG00000025757|protein_coding|Myh6|Myosin-6 (Myosin heavy chain 6) (Myosin heavy chain, cardiac muscle alpha isoform) (MyHC-alpha). [Source:UniProtKB/Swiss-Prot;Acc:P02563] ## ENSRNOG00000035583|miRNA|rno-mir-208|rno-mir-208 [Source:miRBase;Acc:MI0000949] ## {ASMIR: rno-mir-208-as}
human	chromosome:14:22927603:22927758:1	Opposite_strand|Intronic_coding|ENST00000356287|ENSG00000197616|protein_coding|Myosin-6 (Myosin heavy chain 6)(Myosin heavy chain, cardiac muscle alpha isoform)(MyHC-alpha) [Source:UniProtKB/Swiss-Prot;Acc:P13533] ## Opposite_strand|Boundary_non-coding|ENST00000362287|ENSG00000199157|miRNA|hsa-mir-208a [Source:miRBase;Acc:MI0000251] ## {ASMIR: hsa-mir-208a-as}
mouse	chromosome:14:55567861:55568016:1	Opposite_strand|Boundary_non-coding|ENSMUST00000111456|ENSMUSG00000040752|protein_coding|myosin, heavy polypeptide 6, cardiac muscle, alpha Gene [Source:MGI (curated);Acc:Myh6-002] ## Opposite_strand|Intronic_coding|ENSMUST00000081857|ENSMUSG00000040752|protein_coding|myosin, heavy polypeptide 6, cardiac muscle, alpha Gene [Source:MGI (curated);Acc:Myh6-002] ## {ASMIR: mmu-mir-208a-as}

rno-let-7f-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7f-1-as 3arm	0	0	0	1	0	0	0	0.500	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7f-1-as 3arm	0	0	0	0.000	0	0	0	0.000	0	0

block604560 (Antisense miRBase rno-let-7f-1-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-let-7f-1-as

0.001

no

no

0.33/0.38

18/21/0.50

0.0

1.5

2

0

2

0

10

10

3arm

2

nd

0.22

3

2

2

na

na

Clusters

Located in cluster 30: rno-let-7a-1, rno-let-7f-1

Families

Member of family let-7b* (seed UAUACAA): rno-let-7a, rno-let-7f, rno-let-7c, rno-let-7b, rno-let-7f-1

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UAUACAA-----------------------	2	let-7b*
		len	cloning frequencies
			T2S2	T4S2
	----------------------------------------------------------------------CTATACAATCTACTACCTCAC----------	21	1	-
	----------------------------------------------------------------------CTATACAATCTACTACCT-------------	18	-	1
rat	ACTCCTCAGGGAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCACTCTGATAGAG
human	-------GGATGAGGTAGTAGGTTGTATAGTTTT---------AGGGTCACACCCACCACTGGGAGATAACTATACAATCTACTGTCTTTCC---------
mouse	----------GAAGGCAATAGATTGTATAGTTATCTCCTAAACAGGGTAA----AATCACTACCCCACAACTATACAATCTACTACCTCAC----------
	*** * *** ********** *         ***** *     * ****     * ****************  **  *
	.........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<    <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........	ENSRNOT00000053661 ENSRNOG00000035538 rno-let-7f-1
rat	.(((.((((((.(((...((((((((((((((............(((((.    ......)))))...))))))))))))))...)))..))))))..)))	0.900 -30.76
human	(((.(((..((((((((((((((((..         ...(((...((((....)))).)))))))))))))))))))..))))))	0.201 -32.20
mouse	((.((...((((((((((((((............(((((.    ......)))))...))))))))))))))...))))..	0.900 -22.06

rat	chromosome:17:22120131:22120227:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053661|ENSRNOG00000035538 ## ENSRNOG00000035538|miRNA|rno-let-7f-1|rno-let-7f-1 [Source:miRBase;Acc:MI0000833] ## {ASMIR: rno-let-7f-1-as}
human	chromosome:9:95978030:95978166:1	Same_strand|Boundary_non-coding|ENST00000362295|ENSG00000199165|miRNA|hsa-let-7a-1 [Source:miRBase;Acc:MI0000060] ## {MIR: hsa-let-7a-1}
mouse	chromosome:13:48633174:48633310:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083583|ENSMUSG00000065517|miRNA|mmu-let-7f-1 [Source:miRBase;Acc:MI0000562] ## {ASMIR: mmu-let-7f-1-as}

rno-mir-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-1-as 5arm	1	0	0	0	0	0	1	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-1-as 5arm	0.000	0	0	0	0	0	0.000	0	0	0

block724673 (Antisense miRBase rno-mir-1-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-1-as

0.003

no

no

0.26/0.30

19/23/0.50

1.0

3.0

2

0

2

0

22

4

5arm

1

nd

0.17

3

2

2

na

na

		reads	miRBase family seed
seed	-----------------------AUACACA---------------------------------------------------------------------------------	1	novel
seed	-------------------------ACACACU-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T4S1
	----------------------AATACACACTTCTTTACAT----------------------------------------------------------------------	19	-	1
	------------------------TACACACTTCTTTACATTCCATA----------------------------------------------------------------	23	1	-
rat	ttggcggacattacctacccaaAATACACACTTCTTTACATTCCATAgcattctatgttcatatgggtacataaagaagtatgtgctctgagtaggcactattgtgccgat
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000018025 ENSRNOG00000013281 NP_001100875.1
	................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................	ENSRNOT00000053646 ENSRNOG00000035523 rno-mir-1
rat	(((((..(((.(((((((.((...((((.(((((((((...((((((((((...))))...))))))....))))))))).))))...)).)))))...)).)))))))).	0.930 -31.80

rat

chromosome:18:2191660:2191770:1

Opposite_strand|Exonic_non-coding|ENSRNOT00000053646|ENSRNOG00000035523 ## Same_strand|Intronic_coding|ENSRNOT00000018025|ENSRNOG00000013281 ## ENSRNOG00000035523|miRNA|rno-mir-1|rno-mir-1 [Source:miRBase;Acc:MI0003489] ## ENSRNOG00000013281|protein_coding|NP_001100875.1|mindbomb homolog 1 [Source:RefSeq_peptide;Acc:NP_001100875] ## {ASMIR: rno-mir-1-as}

rno-mir-24-2-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-2-as 5arm	0	0	0	0	1	0	0	0	0	0.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-24-2-as 5arm	0	0	0	0	0.000	0	0	0	0	0.000

block804731 (Antisense miRBase rno-mir-24-2-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-24-2-as

0.001

no

no

0.52/0.58

19/21/0.67

1.0

0.3

3

0

2

0

28

1

5arm

2

nd

0.16

2

3

2

na

na

Families

Member of family miR-370 (seed CCUGCUG): rno-mir-370, rno-mir-24-1, rno-mir-24-2, block638635_cand

		reads	miRBase family seed
seed	-------------------------------------GUUCCUG-----------------------------------------------------------------------------------------	2	novel
seed	----------------------------------------CCUGCUG--------------------------------------------------------------------------------------	1	miR-370
		len	cloning frequencies
			T3S1	T5S2
	------------------------------------TGTTCCTGCTGAACTGAGCCA----------------------------------------------------------------------------	21	1	1
	---------------------------------------TCCTGCTGAACTGAGCCAG---------------------------------------------------------------------------	19	1	-
rat	--------TTGCCAGCTCCTATGGGGGCTGGACTCCTGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACAGGAGGCGGAGCCCAGGGAG---AGGCAG---------
human	GGCAGGGGCTGCAGGCTCC-AAGGGGGCTTGACCCCTGTTCCTGCTGAACTGAGCCAGTGTACACAAACCAACTGTGTTTCAGCTCAGTAGGCACGGGAGGCAGAGCCCAGGGAGGCCAGGCAGCAGGATGGC
mouse	------------------------------------TGTTCCTGCTGAACTGAGCCAGTGCACTGGAATCAAC--TGTTTCAGCTCAGTAGGCACG-------------------------------------
	************************ **   ** ****  ********************
	.....        .<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<  <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<   <<<<..         .....	ENSRNOT00000053624 ENSRNOG00000035501 rno-mir-24-2
rat	.((((..(((((.((((..(((..(((((((.((((((((.((((..((((............))  ))..)))).)))))))).))))))).)))..)))))))))   .)))).	1.000 -60.20
human	..((...(((((.(((((( ....((((((..(((((((.((((((((.((((((((((............)))).))).))).)))))))).))))).))..))))))..)))).))..)))))....))..	1.000 -65.90
mouse	.((.((((((((.((((..((((............))  ))..)))).)))))))).)).	0.999 -24.40

rat	chromosome:19:25638429:25638539:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053624|ENSRNOG00000035501 ## ENSRNOG00000035501|miRNA|rno-mir-24-2|rno-mir-24-2 [Source:miRBase;Acc:MI0000855] ## {ASMIR: rno-mir-24-2-as}
human	chromosome:19:13808069:13808200:1	Opposite_strand|Boundary_non-coding|ENST00000386972|ENSG00000209707|miRNA|hsa-mir-24-2 [Source:miRBase;Acc:MI0000081] ## {Repeats: dust 0 class=dust} ## {ASMIR: hsa-mir-24-2-as}
mouse	chromosome:8:86732692:86732842:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083607|ENSMUSG00000065541|miRNA|mmu-mir-24-2 [Source:miRBase;Acc:MI0000572] ## {ASMIR: mmu-mir-24-2-as}

rno-mir-192-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-192-as 3arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-192-as 3arm	0	0	0	0	0	0	0	0	0	0.000

block914513 (Antisense miRBase rno-mir-192-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-192-as

0.001

no

no

0.39/0.39

18/18/0.00

0.0

0.0

1

0

1

0

29

7

3arm

1

nd

0.11

1

1

1

na

na

Families

Member of family miR-192/215 (seed UGACCUA): rno-mir-215, rno-mir-192, rno-mir-192, block1351931_cand

		reads	miRBase family seed
seed	---------------------------------------------------------------------------UGUCAAU---------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	--------------------------------------------------------------------------CTGTCAATTCATAGGTCA-----------------------------------	18	1
rat	-----GGCTGGCATTGAGGCGAACATACCTGTGACCTATGGAACTGGCAGCCAGAGGCGAGATCAGAGTACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGCACTCCATCTTGACAGCCT------
human	--------------------------------GACCTATGGAATTGGCAGCCAGAGGGGAGACGAGAGCACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGC------------------------
mouse	GTTATGGCTGGCATTGAGGTGAACATACCTGTGACCTATGGAATTGGCAGCCAGAGGAGAGAAAAGAGTACTGGCTGTCAATTCATAGGTCAGAGCCCTGTGCACGCCATCTTGGCAGCCTGCTGAC
	*********** ************* ****  **** **********************************
	-----     -----------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<      <<<<<	ENSRNOT00000054830 ENSRNOG00000021028 Ehd1
	.....     .<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.....      .....	ENSRNOT00000053653 ENSRNOG00000035530 rno-mir-192
rat	(((((.((..(((((..(((...((.(((((((((((..((((((((((..((.........)).)))))))))).))))))))))).))...))))).))).....)).))))).	1.000 -51.10
human	(((((((.((((((((((((((................)))))))))))))))))))))............	0.860 -32.99
mouse	((((.(((((.((..((((((..((((.((.((((((((.((((((((((((((................)))))))))))))))))))))).))...))))..)))).)).)).)))))...))))	0.998 -58.59

rat	chromosome:1:209040251:209040366:-1	Opposite_strand|Boundary_non-coding|ENSRNOT00000028547|ENSRNOG00000021028 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053653|ENSRNOG00000035530 ## ENSRNOG00000021028|protein_coding|Ehd1|EH domain-containing protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q641Z6] ## ENSRNOG00000035530|miRNA|rno-mir-192|rno-mir-192 [Source:miRBase;Acc:MI0000935] ## {ASMIR: rno-mir-192-as}
human	chromosome:11:64415211:64415281:1	Opposite_strand|Exonic_non-coding|ENST00000384915|ENSG00000207648|miRNA|hsa-mir-192 [Source:miRBase;Acc:MI0000234] ## {ASMIR: hsa-mir-192-as}
mouse	chromosome:19:6264823:6264949:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083589|ENSMUSG00000065523|miRNA|mmu-mir-192 [Source:miRBase;Acc:MI0000551] ## {ASMIR: mmu-mir-192-as}

rno-mir-124-3-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-3-as 3arm	0.333	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-3-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block1431101 (Antisense miRBase rno-mir-124-3-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-124-3-as

0.001

no

no

0.58/0.58

19/19/0.00

0.0

0.0

1

0

1

0

23

3

3arm

3

nd

0.26

2

1

1

na

na

Families

Member of family novel34 (seed AAGGUCC): rno-mir-124-1, rno-mir-124-2, rno-mir-124-3

		reads	miRBase family seed
seed	-----------------------------------------------------------AAGGUCC------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	----------------------------------------------------------CAAGGTCCGCTGTGAACAC-------------------------	19	1
rat	GCGGCGGAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTCAGGGCTGCG--
human	-CGGCGGAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTCAGGGCTGGGGC
mouse	------GAGGCGCCTCTCTTGGCATTCACCGCGTGCCTTAATTGTATAGACATTAAATCAAGGTCCGCTGTGAACACGCAGAGGGGCCCTC-----------
	*************************************************************************************
	..........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........  .....	ENSRNOT00000053716 ENSRNOG00000035593 rno-mir-124-3
rat	(((((.((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).))))))))))))...))))).	1.000 -47.80
human	((((.((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).))))))))))))...))))....	1.000 -44.00
mouse	((((.((((((((((...(((((.(((..((((.(((............))).))))..))).)))))..)).))))))))))))	1.000 -37.40

rat	chromosome:3:170004563:170004662:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053716|ENSRNOG00000035593 ## ENSRNOG00000035593|miRNA|rno-mir-124-3|rno-mir-124-3 [Source:miRBase;Acc:MI0000892] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: rno-mir-124-3-as}
human	chromosome:20:61280287:61280387:-1	Opposite_strand|Boundary_non-coding|ENST00000384866|ENSG00000207598|miRNA|hsa-mir-124-3 [Source:miRBase;Acc:MI0000445] ## {SimpF: oe = 0.82 0 CpG,rank = 5 -1 FirstEF,rank = 9 -1 FirstEF} ## {ASMIR: hsa-mir-124-3-as}
mouse	chromosome:2:180628737:180628821:-1	Opposite_strand|Exonic_non-coding|ENSMUST00000083520|ENSMUSG00000065454|miRNA|mmu-mir-124-3 [Source:miRBase;Acc:MI0000150] ## {SimpF: oe = 0.90 -1 CpG} ## {ASMIR: mmu-mir-124-3-as}

rno-mir-129-2-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-129-2-as 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-129-2-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block1471184 (Antisense miRBase rno-mir-129-2-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-129-2-as

0.002

no

no

0.53/0.55

19/20/0.50

0.5

0.0

2

0

1

0

33

2

3arm

2

nd

0.15

2

2

1

na

na

Families

Member of family novel162 (seed AAGCCCA): rno-mir-129-2, rno-mir-129-1

		reads	miRBase family seed
seed	------------------------------------------------------------------AGCCCAG--------------------------------------------	1	novel
seed	-----------------------------------------------------------------AAGCCCA---------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------------------------------------------------------AAGCCCAGACCGCAAAAAG---------------------------------	19	1
	----------------------------------------------------------------CAAGCCCAGACCGCAAAAAG---------------------------------	20	1
rat	GCCGAGCGCGCCCTCCGCGAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCGCGAAGGGCAGTCTACCCGCTTCTTCGGT
human	---------GCCCTCCGCAAATGCTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAGATTCGCGAAGGGC--------------------
mouse	-----------------------CTTTTTGGGGTAAGGGCTTCCGGCTATTGAGTTATGTACAGCAAGCCCAGACCGCAAAAAG---------------------------------
	*************************************************************
	..........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................	ENSRNOT00000053665 ENSRNOG00000035542 rno-mir-129-2
rat	((((((((.(((((.(((((((.(((((((.(((..((((((...(((..............)))))))))..))).)))))))))))))).)))))........)))....)))))	0.530 -50.84
human	(((((.(((.(((.(((((((.(((..((((((...(((..............)))))))))..))).)))))))))).))).)))))	0.976 -38.54
mouse	(((((((.(((..((((((...(((..............)))))))))..))).)))))))	0.976 -22.24

rat	chromosome:3:78648926:78649042:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053665|ENSRNOG00000035542 ## ENSRNOG00000035542|miRNA|rno-mir-129-2|rno-mir-129-2 [Source:miRBase;Acc:MI0000637] ## {ASMIR: rno-mir-129-2-as}
human	chromosome:11:43559521:43559608:-1	Opposite_strand|Exonic_non-coding|ENST00000362207|ENSG00000199077|miRNA|hsa-mir-129-2 [Source:miRBase;Acc:MI0000473] ## {SimpF: oe = 0.98 0 CpG} ## {ASMIR: hsa-mir-129-2-as}
mouse	chromosome:2:94081493:94081649:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083577|ENSMUSG00000065511|miRNA|mmu-mir-129-2 [Source:miRBase;Acc:MI0000585] ## {Repeats: trf 0 class=trf,dust 0 class=dust,(CCG)n 1 class=Simple_repeat} ## {SimpF: oe = 1.06 1 CpG, 1 Eponine} ## {ASMIR: mmu-mir-129-2-as}

Back to summary page

other non-annotated miRBase miRNAs:

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