miR-Intess™

other non-annotated miRBase miRNAs

miRBaseNonMapped_lenNOK_randfoldOK (13 loci)

rno-mir-141-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-141-as 3arm	0	1	1	0	1	2	0	2	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-141-as 3arm	0	0.000	0.000	0	0.000	0.000	0	0.000	0	0

block1693829 (Antisense miRBase rno-mir-141-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-141-as

0.001

no

no

0.50/0.52

18/23/0.57

0.0

1.7

7

0

5

0

13

2

3arm

1

nd

0.10

2

7

5

na

na

Clusters

Located in cluster 58: rno-mir-141, rno-mir-200c

Families

Member of family miR-141/200a (seed AACACUG): rno-mir-200a, rno-mir-141, rno-mir-141

		reads	miRBase family seed
seed	-------------------------------------------------------------AACACUG----------------------------	7	miR-141/200a
		len	cloning frequencies
			T1S2	T2S1	T3S1	T3S2	T4S2
	------------------------------------------------------------CAACACTGCACTGGAAGA------------------	18	1	1	1	-	-
	------------------------------------------------------------CAACACTGCACTGGAAGATGGAC-------------	23	-	-	-	2	-
	------------------------------------------------------------CAACACTGCACTGGAAGATG----------------	20	-	-	-	-	2
rat	GGAACTGACCCGGGGGCCATCTTTACCAGACAGTGTTAGGAGCTTCGTACTTCAACCATCCAACACTGCACTGGAAGATGGACTCAGAGTCAGCCA
human	----------------CCATCTTTACCAGACAGTGTTAGGAGCTTCACAATTAGACCATCCAACACTGTACTGGAAGATGGACCCAGGG-------
mouse	------------GGGGCCATCTTTACCAGACAGTGTTAGGAGCTTCATACTTCAACCATCCAACACTGCACTGGAAGATGGACCCAGAGC------
	******************************  * **  ************** ************** *** *
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000056049 ENSRNOG00000037145
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000056039 ENSRNOG00000037143
	......<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......	ENSRNOT00000053700 ENSRNOG00000035577 rno-mir-141
rat	((..(((((...(((.(((((((..((((.(((((((.(((.................))))))))))..))))))))))).)))...))))))).	1.000 -36.93
human	(((((((..((((((((((((.(((...((.......))...))))))))))).)))))))))))........	0.980 -29.30
mouse	.((((((((((..((((.(((((((.(((.................))))))))))..))))))))))).))).....	1.000 -31.53

rat	chromosome:4:160840903:160840998:1	Same_strand|Intronic_coding|ENSRNOT00000056039|ENSRNOG00000037143 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053700|ENSRNOG00000035577 ## ENSRNOG00000035577|miRNA|rno-mir-141|rno-mir-141 [Source:miRBase;Acc:MI0000914] ## ENSRNOG00000037145|protein_coding|| ## ENSRNOG00000037143|protein_coding|| ## {ASMIR: rno-mir-141-as}
human	chromosome:12:6943528:6943600:-1	Opposite_strand|Exonic_non-coding|ENST00000384975|ENSG00000207708|miRNA|hsa-mir-141 [Source:miRBase;Acc:MI0000457] ## {ASMIR: hsa-mir-141-as}
mouse	chromosome:6:124667931:124668008:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083540|ENSMUSG00000065474|miRNA|mmu-mir-141 [Source:miRBase;Acc:MI0000166] ## {ASMIR: mmu-mir-141-as}

rno-mir-200c-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-200c-as 3arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-200c-as 3arm	0	0	0	0	0	0	0	0	0.000	0

block1693830 (Antisense miRBase rno-mir-200c-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-200c-as

0.001

no

no

0.56/0.56

18/18/0.00

0.0

0.0

1

0

1

0

21

0

3arm

1

nd

0.17

3

1

1

na

na

Clusters

Located in cluster 58: rno-mir-141, rno-mir-200c

Families

Member of family novel69 (seed CUGCUGG): rno-mir-200c, block1902562_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------CUGCUGG-----------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------------------------------------------------------------------ACTGCTGGGTAAGACGAG-------------------------	18	1
rat	TGGACGCCGATGACACAGGGGCAGGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACCAGCACCCAAACACTGCTGGGTAAGACGAGGGCCCCTACCCAACCAGTCCA----
human	-----------------------GGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACC-GCACCCAAACACTGCTGGGTAAGACGAGGGCCCCCGCCCAGCCC---------
mouse	T----------------GGGACAGGGGCCTCCATCATTACCCGGCAGTATTAGAGACTCCCAACCAGCACCCAAACACTGCTGGGTAAGACGAGGGCCCCTACCCAACCAGTCCACCTT
	****************************************** **********************************  **** **
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++    +++++	ENSRNOT00000056049 ENSRNOG00000037145
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++    +++++	ENSRNOT00000056039 ENSRNOG00000037143
	................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................    .....	ENSRNOT00000053710 ENSRNOG00000035587 rno-mir-200c
rat	.((((.............(((.((((((((...((.((((((((((((............................))))))))))))))...)))))))).))).....)))).	0.540 -46.26
human	(((((((...((.((((((((((((................. ..........))))))))))))))...)))))))..........	0.906 -33.83
mouse	(                (((..((((((((...((.((((((((((((............................))))))))))))))...)))))))).)))).............	0.985 -41.09

rat	chromosome:4:160841317:160841431:1	Same_strand|Intronic_coding|ENSRNOT00000056039|ENSRNOG00000037143 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053710|ENSRNOG00000035587 ## ENSRNOG00000035587|miRNA|rno-mir-200c|rno-mir-200c [Source:miRBase;Acc:MI0000942] ## ENSRNOG00000037145|protein_coding|| ## ENSRNOG00000037143|protein_coding|| ## {ASMIR: rno-mir-200c-as}
human	chromosome:12:6943109:6943194:-1	Opposite_strand|Boundary_non-coding|ENST00000384980|ENSG00000207713|miRNA|hsa-mir-200c [Source:miRBase;Acc:MI0000650] ## {ASMIR: hsa-mir-200c-as}
mouse	chromosome:6:124668329:124668431:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083528|ENSMUSG00000065462|miRNA|mmu-mir-200c [Source:miRBase;Acc:MI0000694] ## {ASMIR: mmu-mir-200c-as}

rno-mir-101a-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-101a-as 5arm	0	0	1	0	0	0	0	1	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-101a-as 5arm	0	0	0.000	0	0	0	0	0.000	0	0.000

block1867678 (Antisense miRBase rno-mir-101a-as) [miRBaseNonMapped_lenNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-101a-as

0.001

no

no

0.39/0.39

18/18/0.00

0.0

0.0

3

0

3

0

27

4

5arm

1

nd

0.06

1

3

3

na

na

Families

Member of family miR-101a/101b (seed ACAGUAC): rno-mir-101b, rno-mir-101a, rno-mir-101a

		reads	miRBase family seed
seed	--------------------------------------------CAGUUAU--------------------------------------------------------------------------------------------	3	miR-101a*
		len	cloning frequencies
			T2S1	T4S2	T5S2
	-------------------------------------------TCAGTTATCACAGTACTG----------------------------------------------------------------------------------	18	1	1	1
rat	----------------GGAGGAAGGCAAGATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATGGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACCA-------------------
human	----------------------------GATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATAGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACTGT------------------
mouse	GTGATGAGACTTCTCGGGAGGAAGGCAAGATGGCTGCCATCCTTCAGTTATCACAGTACTGTACCTTTAGAATGGACAGCATCAGCACTGTGATAACTGAGCCAGGGCAGCCTGTCAGTCACCGTGTCCGTCAGTGACGTCAC
	********************************************* ************************************************
	.....                ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........                   .....	ENSRNOT00000053722 ENSRNOG00000035599 rno-mir-101a
rat	((.((..((((....(((((((....(((((((((((((((.((((.((........)))))).......)))))))))))))))....)))))))))))..)).)).	0.880 -47.50
human	((((((((((....(((((((((((((((.(((...((((......)).))...))).)))))))))))))))....))))))).))).........	0.953 -42.00
mouse	((((((..(((...((((.((..(((..((((((((((....(((((((((((((((.((((.((........)))))).......)))))))))))))))....))))))).))).))).))...))))..)))..))))))	0.839 -60.20

rat	chromosome:5:121990567:121990674:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053722|ENSRNOG00000035599 ## ENSRNOG00000035599|miRNA|rno-mir-101a|rno-mir-101a [Source:miRBase;Acc:MI0000886] ## {ASMIR: rno-mir-101a-as}
human	chromosome:1:65296699:65296795:1	Opposite_strand|Boundary_non-coding|ENST00000362265|ENSG00000199135|miRNA|hsa-mir-101-1 [Source:miRBase;Acc:MI0000103] ## {ASMIR: hsa-mir-101-1-as}
mouse	chromosome:4:101019520:101019662:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083517|ENSMUSG00000065451|miRNA|mmu-mir-101a [Source:miRBase;Acc:MI0000148] ## {ASMIR: mmu-mir-101a-as}

miRBaseNonMapped (6 loci)

rno-mir-181a-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-181a-1-as 5arm	0	0	0	1	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-181a-1-as 5arm	0	0	0	0.000	0	0	0	0	0	0

block260323 (Antisense miRBase rno-mir-181a-1-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-181a-1-as

0.183

no

no

0.50/0.50

22/22/1.00

0.0

0.0

1

0

1

0

22

2

5arm

1

nd

0.18

2

1

1

na

na

		reads	miRBase family seed
seed	-----------------------GUACAAU---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	----------------------GGTACAATCAACGGTCGATGGT-------------------------------------------------------------------------	22	1
rat	AGTAGATAATGGTTAGCTATAGGGTACAATCAACGGTCGATGGTTTTTATTTGAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTGTGAGCCAGAGGTGTGCTG
human	------TGATGGTTAGCCATAGGGTACAATCAACGGTCGATGGTTTTGATTTTAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTCAAAACTCAGAATTC----
mouse	---------------GCTATAGGGTACAATCAACGGTCGATGGTTTTTATTTGAATTCCAAACTCACCGACAGCGTTGAATGTTCACTGAAGCAACCTGTG----------------
	** ***************************** **** *********************************************
	...<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................	ENSRNOT00000053617 ENSRNOG00000035494 rno-mir-181a-1
rat	((((.((..(((((.(((.(((...(((.((((((((((.((((((.............)))).)).))))..)))))).)))...))).)))........)))))...)).)))).	0.580 -30.22
human	(((.((((.((..(((...(((.((((((((((.((((((.((.......)).)))).)).))))..)))))).)))...)))..))))))))).............	0.998 -29.30
mouse	(((.(((...(((.((((((((((.((((((.............)))).)).))))..)))))).)))...))).)))........	0.996 -22.32

rat	chromosome:13:51132498:51132614:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053617|ENSRNOG00000035494 ## ENSRNOG00000035494|miRNA|rno-mir-181a-1|rno-mir-181a-1 [Source:miRBase;Acc:MI0000953] ## {ASMIR: rno-mir-181a-1-as}
human	chromosome:1:197094805:197094911:1	Opposite_strand|Boundary_non-coding|ENST00000385026|ENSG00000207759|miRNA|hsa-mir-181a-1 [Source:miRBase;Acc:MI0000289] ## {ASMIR: hsa-mir-181a-1-as}
mouse	chromosome:1:139863028:139863113:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083631|ENSMUSG00000065565|miRNA|mmu-mir-181a-1 [Source:miRBase;Acc:MI0000697] ## {ASMIR: mmu-mir-181a-1-as}

rno-mir-200a-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-200a-as 3arm	0	2	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-200a-as 3arm	0	0.000	0	0	0	0	0	0	0	0

block1904082 (Antisense miRBase rno-mir-200a-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-200a-as

0.029

no

no

0.61/0.61

23/23/1.00

0.0

0.0

2

0

1

0

30

6

3arm

1

nd

0.13

2

2

1

na

na

Families

Member of family novel134 (seed AGCACUG): rno-mir-200a, block1439930_cand

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AGCACUG----------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2
	-------------------------------------------------------------------------------------CAGCACTGTCCGGTAAGATGCCC-------------------------------------------	23	2
rat	------------------CTTCGGCGAGTGTTGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCCAAGAAATCCAGCACTGTCCGGTAAGATGCCCACAGAGGCCCAGGTATGCTTTGG--------TAGGAAG-----
human	--TGCCTCGGTGG--TGTCCCCGGCGAGCGGCGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCTGGGAAATCCAGCACTGTCCGGTAAGATGCTCACAGGGGCCCGGGAGGGACGTGGGGTCCCGCCAGGCA------
mouse	TGTGTATCATCAGCCTGTCTTCGGCGAATGGTGGGTCACCTTTGAACATCGTTACCAGACAGTGTTAGAGTCAAGCCAAGAAATCCAGCACTGTCCGGTAAGATGCCCACAGAGGCCCAGGTATGCTCTGG--------CAGGAAGACACA
	*  ******  *  ********************************************   *************************** ***** ***** **   *   ***         *** *
	.....                  .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........        .......     .....	ENSRNOT00000053773 ENSRNOG00000035650 rno-mir-200a
rat	((((.((((((((((((((..((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)).))))))...))))))..)        )..))))	0.980 -41.40
human	.((((.(((((  ..((((((........((((((.(((.(((.((((.(((((.(((((((((.((.((......))...)).))))))))).))))))))).))).))))))))).......)).))))..))))))))).	0.889 -71.36
mouse	.((((........((((((...((((.((..((((((..((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)).)))))).)).))))..))        ))))...)))).	0.994 -52.30

rat	chromosome:5:172898207:172898326:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053773|ENSRNOG00000035650 ## ENSRNOG00000035650|miRNA|rno-mir-200a|rno-mir-200a [Source:miRBase;Acc:MI0000943] ## {ASMIR: rno-mir-200a-as}
human	chromosome:1:1093081:1093221:-1	Opposite_strand|Boundary_non-coding|ENST00000384875|ENSG00000207607|miRNA|hsa-mir-200a [Source:miRBase;Acc:MI0000737] ## {SimpF: oe = 0.62 0 CpG} ## {ASMIR: hsa-mir-200a-as}
mouse	chromosome:4:155428975:155429117:1	Opposite_strand|Boundary_non-coding|ENSMUST00000051509|ENSMUSG00000029074|protein_coding|tubulin tyrosine ligase-like family, member 10 Gene [Source:MGI (curated);Acc:Ttll10-001] ## Opposite_strand|Intronic_non-coding|ENSMUST00000097731|ENSMUSG00000029074|protein_coding|tubulin tyrosine ligase-like family, member 10 Gene [Source:MGI (curated);Acc:Ttll10-001] ## {ASMIR: mmu-mir-200a-as}

rno-mir-539-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-539-as 3arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-539-as 3arm	0	0	0	0	0	0	0	0	0.000	0

block1981446 (Antisense miRBase rno-mir-539-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-539-as

0.020

no

no

0.41/0.41

22/22/1.00

0.0

0.0

1

0

1

0

28

6

3arm

1

nd

0.27

3

1

1

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------------CACACCA------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	-----------------------------------------------------------------ACACACCAAGGATAATTTCTCC----------------------------	22	1
rat	tccgccagggcagtatttgatactcgaaaagaaattacccttgtatgattcatccaaaagagcaaACACACCAAGGATAATTTCTCCtcaagtatgaaacagtagcacagcagga
	*******************************************************************************************************************
	........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........................	ENSRNOT00000054596 ENSRNOG00000036488 rno-mir-539
rat	(((((....((....(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).....))...)).)))	0.890 -25.10

rat

chromosome:6:134408897:134409011:-1

Opposite_strand|Exonic_non-coding|ENSRNOT00000054596|ENSRNOG00000036488 ## ENSRNOG00000036488|miRNA|rno-mir-539|rno-mir-539 [Source:miRBase;Acc:MI0003526] ## {ASMIR: rno-mir-539-as}

rno-mir-412-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-412-as 5arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-412-as 5arm	0	0	0	0	0	0	0	0	0	0.000

block1981454 (Antisense miRBase rno-mir-412-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-412-as

0.145

no

no

0.60/0.60

20/20/1.00

0.0

0.0

1

0

1

0

29

8

5arm

1

nd

0.25

3

1

1

na

na

Clusters

Located in cluster 64: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369

		reads	miRBase family seed
seed	------------------------------CGGCUAG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	-----------------------------ACGGCTAGTGGACCAGGTGA------------------------------------------------------------------	20	1
rat	CATCCTGGCGCAGGCTGCGGCGGGCACCGACGGCTAGTGGACCAGGTGAAGTACATTAGAAACAATTACTTTCCAGCTGGTCGACCATCCGTCCCATACCCCAGAGCGAAGATGA
mouse	----------------------------GACGGCTAGTGGACCAGGTGAAGTACATTAGAAACAATTACTTTCCAGCTGGTCGACCATCCGTC----------------------
	*****************************************************************
	..........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................	ENSRNOT00000053613 ENSRNOG00000035490 rno-mir-412
rat	((((....(((...(((.((..((....(((((...((.((((((.(((((((.(((......))))))))..)).)))))).))...)))))))...)).))).)))..)))).	0.850 -38.40
mouse	(((((...((.((((((.(((((((.(((......))))))))..)).)))))).))...)))))	1.000 -23.90

rat	chromosome:6:134424636:134424750:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053613|ENSRNOG00000035490 ## ENSRNOG00000035490|miRNA|rno-mir-412|rno-mir-412 [Source:miRBase;Acc:MI0003488] ## {ASMIR: rno-mir-412-as}
mouse	chromosome:12:110981507:110981571:-1	Opposite_strand|Exonic_non-coding|ENSMUST00000083636|ENSMUSG00000065570|miRNA|mmu-mir-412 [Source:miRBase;Acc:MI0001164] ## {ASMIR: mmu-mir-412-as}

rno-mir-369-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-369-as 3arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-369-as 3arm	0	0	0	0	0	0	0	0	0	0.000

block1981455 (Antisense miRBase rno-mir-369-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-369-as

0.035

no

no

0.48/0.48

23/23/1.00

0.0

0.0

1

0

1

0

33

4

3arm

1

nd

0.26

2

1

1

na

na

Clusters

Located in cluster 64: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369

		reads	miRBase family seed
seed	--------------------------------------------------------------CGAAUAU------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------------------------------------GCGAATATAACACGGTCGATCTC---------------------------------	23	1
rat	TCTCCAAGCTGAGCATTGATACTGAGAAAAGATCAACCATGTATTATTCGAAGTCAGCTAAGCGAATATAACACGGTCGATCTCCCTTCAAGTACCAGCAGAGGTGCCGAGCTGAGG
human	-----------------------------AGATCAACCATGTATTATTCGAAGTCAATAAAGCGAATATAACACGGTCGATCTCCC-------------------------------
mouse	-----------------------------AGATCAACCATGTATTATTCGAAGTCAGCCAAGCGAATATAACACGGTCGATCT----------------------------------
	***************************   ************************
	......................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..........................	ENSRNOT00000053620 ENSRNOG00000035497 rno-mir-369
rat	.(((..((((..((((((.(((((((...(((((.(((.(((..((((((.((....))...))))))..))).))).)))))...)))).))).))......))))..))))))).	0.720 -32.30
human	(((((.(((.(((..((((((............))))))..))).))).)))))...	1.000 -15.20
mouse	(((((.(((.(((..((((((............))))))..))).))).)))))	1.000 -15.10

rat	chromosome:6:134424757:134424873:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053620|ENSRNOG00000035497 ## ENSRNOG00000035497|miRNA|rno-mir-369|rno-mir-369 [Source:miRBase;Acc:MI0003551] ## {ASMIR: rno-mir-369-as}
human	chromosome:14:100601693:100601749:-1	Opposite_strand|Exonic_non-coding|ENST00000362155|ENSG00000199025|miRNA|hsa-mir-369 [Source:miRBase;Acc:MI0000777] ## {SimpF: oe = 0.96 0 CpG,rank = 1 -1 FirstEF} ## {ASMIR: hsa-mir-369-as}
mouse	chromosome:12:110981587:110981743:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083627|ENSMUSG00000065561|miRNA|mmu-mir-369 [Source:miRBase;Acc:MI0003535] ## {ASMIR: mmu-mir-369-as}

rno-mir-501-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-501-as 5arm	0	0	0	1	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-501-as 5arm	0	0	0	0.000	0	0	0	0	0	0

block2680078 (Antisense miRBase rno-mir-501-as) [miRBaseNonMapped]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-501-as

0.017

no

no

0.55/0.55

22/22/1.00

0.0

0.0

1

0

1

0

29

2

5arm

1

nd

0.23

3

1

1

na

na

		reads	miRBase family seed
seed	-------------------------------------------------AAAUCCU---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------------------------CAAATCCTTGCCCGGGTGCATT-------------------------------------------------------------------------------	22	1
rat	---------CCTC----------ACATGCAGACCAGGCTTACCTTCCCCAAATCCTTGCCCGGGTGCATTGCATACAAATAGCATTTTCACCCAGGGACAAAGGATTAGAGAGGACGAGCAGAGCAGAAGG------------------
mouse	ATGCACAGACCTCCTGTCCTTCTCCATGCAGATCAGGCTCACCTTCCCCAAATCCTTGCCCGGGTGCATTGCATACAAATAGCATTTTCACCCAGGGACAAAGGATTAGAGAGGATGAGCAGAGCAGAAGGCCCAGGCACCTGTACCAT
	****           ******** ****** *************************************************************************** ***************
	.....         ....          .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........                  .....	ENSRNOT00000054671 ENSRNOG00000036567 rno-mir-501
rat	(((.          ...(((.......((((..((((....(((((((.((((((((...(((.........)))....))))).)))...)))))))...))))..))))...)))..)))	0.960 -34.40
mouse	....((((....((((.(((((....(((...((..(((((.((((....(((((((.((((((((...(((.........)))....))))).)))...)))))))...)))).))))).))))))))))..))))...)))).....	0.965 -50.80

rat	chromosome:X:27331140:27331251:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000054671|ENSRNOG00000036567 ## ENSRNOG00000036567|miRNA|rno-mir-501|rno-mir-501 [Source:miRBase;Acc:MI0003480] ## {ASMIR: rno-mir-501-as}
mouse	chromosome:X:6818348:6818496:1	Opposite_strand|Boundary_non-coding|ENSMUST00000004428|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## Opposite_strand|Intronic_coding|ENSMUST00000115746|ENSMUSG00000004317|protein_coding|chloride channel 5 Gene [Source:MGI (curated);Acc:Clcn5-004] ## {ASMIR: mmu-mir-501-as}

miRBaseNonMapped_lenNOK (4 loci)

rno-mir-497-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-497-as 3arm	0	1	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-497-as 3arm	0	0.000	0	0	0	0	0	0	0	0

block25628 (Antisense miRBase rno-mir-497-as) [miRBaseNonMapped_lenNOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-497-as

0.012

no

no

0.50/0.50

18/18/0.00

0.0

0.0

1

0

1

0

29

3

3arm

1

nd

0.22

2

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UACAAAC---------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------------------------GTACAAACCACAGTGTGC-----------------------------	18	1
rat	CAGGCCTCAGCGGTGCCTCCCATACCCTCGCTCTAACACCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGCTGCTGGGGCGGGAGCAGGACTGGGGTGTG
human	--------------------------------------CCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGC-----------------------------
mouse	--------------------------------------CCACAGTGTGGTTTGGACGTGGCCACAGTGCCGTACAAACCACAGTGTGC-----------------------------
	**************************************************
	..............................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................	ENSRNOT00000054383 ENSRNOG00000036260 rno-mir-497
rat	((.(((((((...((.(((((........((((((.((.((((.(((((((((....((((......))))..))))))))).)))).)).)))))))))))))...))))))).))	0.890 -55.00
human	.((((.(((((((((....((((......))))..))))))))).)))).	1.000 -24.20
mouse	.((((.(((((((((....((((......))))..))))))))).)))).	1.000 -24.20

rat	chromosome:10:57073823:57073939:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000054383|ENSRNOG00000036260 ## ENSRNOG00000036260|miRNA|rno-mir-497|rno-mir-497 [Source:miRBase;Acc:MI0003724] ## {ASMIR: rno-mir-497-as}
human	chromosome:17:6861891:6862047:1	Opposite_strand|Boundary_non-coding|ENST00000385056|ENSG00000207791|miRNA|hsa-mir-497 [Source:miRBase;Acc:MI0003138] ## {ASMIR: hsa-mir-497-as}
mouse	chromosome:11:70048188:70048344:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000093601|ENSMUSG00000070109|miRNA|mmu-mir-497 [Source:miRBase;Acc:MI0004636] ## {ASMIR: mmu-mir-497-as}

Back to summary page

other non-annotated miRBase miRNAs:

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