miR-Intess: classification

other non-annotated miRBase miRNAs

miRBaseNonMapped_lenNOK_cloningOK_multiarm_DicerNOK_randfoldOK (2 loci)

miRBaseNonMapped_lenNOK_nonpairedHIGH_bulgeHIGH (2 loci)

rno-mir-124-1-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-1-as 3arm	0.333	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-1-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block445739 (Antisense miRBase rno-mir-124-1-as) [miRBaseNonMapped_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-124-1-as	0.017	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	13	8	3arm	3	nd	0.37	4	1	1	na	na

Families
Member of family novel34 (seed AAGGUCC): rno-mir-124-1, rno-mir-124-2, rno-mir-124-3

		reads	miRBase family seed
seed	---------------------------------------------------AAGGUCC------------------------	1	novel
		len	cloning frequencies
			T1S1
	--------------------------------------------------CAAGGTCCGCTGTGAACAC-------------	19	1
rat	GCCCCATTCTTGGCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACACGGAGAGAGAGGCC
human	------------GCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACAC-------------
mouse	------------GCATTCACCGCGTGCCTTAATTGTATGGACATTTAAATCAAGGTCCGCTGTGAACAC-------------
	*********************************************************
	...<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....	ENSRNOT00000053594 ENSRNOG00000035471 rno-mir-124-1
rat	(((...(((((....(((((.(((..((((.(((..((....))...))).))))..))).)))))....)))))...))).	0.990 -23.80
human	...(((((.(((..((((.(((..((....))...))).))))..))).)))))...	1.000 -16.60
mouse	...(((((.(((..((((.(((..((....))...))).))))..))).)))))...	1.000 -16.60

rat	chromosome:15:43944537:43944618:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053594\|ENSRNOG00000035471 ## ENSRNOG00000035471\|miRNA\|rno-mir-124-1\|rno-mir-124-1 [Source:miRBase;Acc:MI0000893] ## {ASMIR: rno-mir-124-1-as}
human	chromosome:8:9798290:9798411:1	Opposite_strand\|Boundary_non-coding\|ENST00000385275\|ENSG00000208010\|miRNA\|hsa-mir-124-1 [Source:miRBase;Acc:MI0000443] ## {Repeats: dust 0 class=dust,trf 0 class=trf,trf 0 class=trf} ## {SimpF: oe = 0.81 0 CpG,rank = 1 1 FirstEF} ## {ASMIR: hsa-mir-124-1-as}
mouse	chromosome:14:65209475:65209596:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083663\|ENSMUSG00000065597\|miRNA\|mmu-mir-124-1 [Source:miRBase;Acc:MI0000716] ## {Repeats: dust 0 class=dust,(TTCC)n -1 class=Simple_repeat,trf 0 class=trf} ## {ASMIR: mmu-mir-124-1-as}

rno-let-7a-1-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7a-1-as 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7a-1-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block604559 (Antisense miRBase rno-let-7a-1-as) [miRBaseNonMapped_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-let-7a-1-as	0.624	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	28	9	3arm	1	nd	0.37	4	1	1	na	na

Clusters
Located in cluster 30: rno-let-7a-1, rno-let-7f-1

		reads	miRBase family seed
seed	--------------------------------------------------------------UAGAUUG---------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-------------------------------------------------------------GTAGATTGTATAGTTATCT----------------------------	19	1
rat	tagttcttggtttcctactagatccacgaatgcagacttttccatcaccttaggaaagacaGTAGATTGTATAGTTATCTcccagtggtgggtgtgaccctaaaacta
	************************************************************************************************************
	................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	ENSRNOT00000053755 ENSRNOG00000035632 rno-let-7a-1
rat	(((((...((((.((((((((((..((..(((((.((((((((.........)))))...)))....))))).)).))))......))))))...))))....)))))	0.680 -20.80

rat

chromosome:17:22119796:22119903:-1

Opposite_strand|Exonic_non-coding|ENSRNOT00000053755|ENSRNOG00000035632 ## ENSRNOG00000035632|miRNA|rno-let-7a-1|rno-let-7a-1 [Source:miRBase;Acc:MI0000827] ## {ASMIR: rno-let-7a-1-as}

miRBaseNonMapped_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)

rno-mir-449a-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-449a-as 5arm	0	0	0	0	0	0	0	0	1	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-449a-as 5arm	0	0	0	0	0	0	0	0	0.000	0

block1142354 (Antisense miRBase rno-mir-449a-as) [miRBaseNonMapped_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-449a-as	0.001	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	24	4	5arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------GAGCAGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	------------------------AGAGCAGTTGCATGTTAGC----------------------------------------------------------	19	1
rat	GCTGTTGATTGTATGTGCAATAGGAGAGCAGTTGCATGTTAGCTGGTGCCTTTTACATACTCAACCAGCTAACAATACACTGCCAACCCATCGCACACAGC
mouse	------------------------AGAGCAGTCGCATGTTAGCTGGTGCCGCTCACATACTCAACCAGCTAACAATACACTGCCAA---------------
	****** *************** * ********************************
	..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......	ENSRNOT00000053745 ENSRNOG00000035622 rno-mir-449a
rat	(((((.........((((.((.((...(((((....(((((((((((................)))))))))))....)))))...)).)).)))))))))	0.970 -34.59
mouse	...(((((....(((((((((((................)))))))))))....)))))...	1.000 -23.19

rat	chromosome:2:44418272:44418372:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053745\|ENSRNOG00000035622 ## ENSRNOG00000035622\|miRNA\|rno-mir-449a\|rno-mir-449a [Source:miRBase;Acc:MI0001650] ## {ASMIR: rno-mir-449a-as}
mouse	chromosome:13:113827721:113827861:-1	Opposite_strand\|Intronic_coding\|ENSMUST00000109244\|ENSMUSG00000078926\|protein_coding\| ## Opposite_strand\|Boundary_non-coding\|ENSMUST00000083641\|ENSMUSG00000065575\|miRNA\|mmu-mir-449a [Source:miRBase;Acc:MI0001649] ## {ASMIR: mmu-mir-449a-as}

rno-mir-124-2-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-2-as 3arm	0.333	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-124-2-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block1165948 (Antisense miRBase rno-mir-124-2-as) [miRBaseNonMapped_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-124-2-as	0.001	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	25	3	3arm	3	nd	0.37	4	1	1	na	na

Families
Member of family novel34 (seed AAGGUCC): rno-mir-124-1, rno-mir-124-2, rno-mir-124-3

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------AAGGUCC--------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------------------------------------------------------------------------------CAAGGTCCGCTGTGAACAC---------------------------------------	19	1
rat	--------------------TCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGTCTCTGATCTTGAT--------------
human	CTGAGATGCTTTGGTGTCCTTCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGCCTCTAATCTTGATCCGGAAAGTATAAG
mouse	--------------------TCAAGTGCAGCCGTAGGCTCCGCTCTTGGCATTCACCGCGTGCCTTAATTGTATGACATTAAATCAAGGTCCGCTGTGAACACGGAGAGCAGAGTCTCTGATCTTGATCTAGAAG-------
	******************************************************************************************** ******
	....< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< .....	ENSRNOT00000053622 ENSRNOG00000035499 rno-mir-124-2
rat	(((((..(((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).)))))))))..))))).	1.000 -40.90
human	.....((((((.....(((.(((((...((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).))))))))...)))))...)))))))))...	0.849 -46.50
mouse	(((((..(((....((((((.((((((....(((((.(((..((((.(((...........))).))))..))).)))))....)))))).)))))))))..)))))........	0.998 -40.90

rat	chromosome:2:102699466:102699573:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053622\|ENSRNOG00000035499 ## ENSRNOG00000035499\|miRNA\|rno-mir-124-2\|rno-mir-124-2 [Source:miRBase;Acc:MI0000894] ## {ASMIR: rno-mir-124-2-as}
human	chromosome:8:65454246:65454387:-1	Opposite_strand\|Boundary_non-coding\|ENST00000385081\|ENSG00000207816\|miRNA\|hsa-mir-124-2 [Source:miRBase;Acc:MI0000444] ## {ASMIR: hsa-mir-124-2-as}
mouse	chromosome:3:17695655:17695769:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083624\|ENSMUSG00000065558\|miRNA\|mmu-mir-124-2 [Source:miRBase;Acc:MI0000717] ## {ASMIR: mmu-mir-124-2-as}

miRBaseNonMapped_nonpairedHIGH (2 loci)

rno-mir-29b-1-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-29b-1-as 3arm	0.500	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-29b-1-as 3arm	0.000	0	0	0	0	0	0	0	0	0

block1641811 (Antisense miRBase rno-mir-29b-1-as) [miRBaseNonMapped_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-29b-1-as	0.133	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	7	2	3arm	2	nd	0.33	3	1	1	na	na

Clusters
Located in cluster 56: rno-mir-29a, rno-mir-29b-1

Families
Member of family novel25 (seed ACACUGA): rno-mir-29b-1, block380705_cand, block380776_cand, block380844_cand

		reads	miRBase family seed
seed	------------------------------------ACACUGA--------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------------------------AACACTGATTTCAAATGGTGC-------	21	1
rat	ttgtgtggtcggcagcgaagttgttctccaccaagAACACTGATTTCAAATGGTGCtagacaa
	***************************************************************
	................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	ENSRNOT00000053586 ENSRNOG00000035463 rno-mir-29b-1
rat	.(((.(((.((.((..(((((((((((......))))))...)))))...)).))))).))).	0.980 -16.10

rat

chromosome:4:58108112:58108174:1

Opposite_strand|Exonic_non-coding|ENSRNOT00000053586|ENSRNOG00000035463 ## ENSRNOG00000035463|miRNA|rno-mir-29b-1|rno-mir-29b-1 [Source:miRBase;Acc:MI0000864] ## {ASMIR: rno-mir-29b-1-as}

rno-mir-382-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-382-as 5arm	0	0	0	1	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-382-as 5arm	0	0	0	0.000	0	0	0	0	0	0

block1981450 (Antisense miRBase rno-mir-382-as) [miRBaseNonMapped_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-382-as	0.016	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	30	2	5arm	1	nd	0.32	3	1	1	na	na

Families
Member of family novel129 (seed AGUGUUG): rno-mir-382, block1645924_cand

		reads	miRBase family seed
seed	-------------------------------AGUGUUG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------------AAGTGTTGTCCGTGAATGATTC-------------------------------------------------------------------------------	22	1
rat	GTCCTTAGAGGTAGCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACAGAAAAGCAGAGACA---------------
human	------------------TGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCATAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCA-------------------------------
mouse	-------------GCATTTGGTACTGAAAAAAGTGTTGTCCGTGAATGATTCGTCACAAGTAAAGCGAATCCACCACGAACAACTTCTCTTCAAGTACCACAGAAAAGCAGAGACAAGACAGACAAAGGGC
	************************************ *****************************************
	........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................. .....	ENSRNOT00000053748 ENSRNOG00000035625 rno-mir-382
rat	(((((........((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))))....)).)))).))).	0.630 -29.40
human	.(((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))).	1.000 -27.70
mouse	((.((((((((((((......(((((.((((...(((((((..........)))))))...)))).))))).....)))).))))))....)).))......................	0.990 -28.40

rat	chromosome:6:134415246:134415361:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053748\|ENSRNOG00000035625 ## ENSRNOG00000035625\|miRNA\|rno-mir-382\|rno-mir-382 [Source:miRBase;Acc:MI0003548] ## {ASMIR: rno-mir-382-as}
human	chromosome:14:100590393:100590474:-1	Opposite_strand\|Boundary_non-coding\|ENST00000385009\|ENSG00000207742\|miRNA\|hsa-mir-382 [Source:miRBase;Acc:MI0000790] ## {ASMIR: hsa-mir-382-as}
mouse	chromosome:12:110971947:110972064:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083494\|ENSMUSG00000065428\|miRNA\|mmu-mir-382 [Source:miRBase;Acc:MI0000799] ## {ASMIR: mmu-mir-382-as}

miRBaseNonMapped_randfoldOK_nonpairedHIGH_bulgeHIGH (2 loci)

rno-mir-218-1-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-218-1-as 3arm	0	0	1	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-218-1-as 3arm	0	0	0.000	0	0	0	0	0	0	0.000

block406701 (Antisense miRBase rno-mir-218-1-as) [miRBaseNonMapped_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-218-1-as	0.002	no	no	0.40/0.43	20/21/1.00	0.5	0.0	2	0	2	0	27	1	3arm	1	nd	0.33	4	2	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AUGGUUA----------------------------------------	1	novel
seed	--------------------------------------------------------------------UGGUUAG---------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T5S2
	-------------------------------------------------------------------ATGGTTAGATCAAGCACAAC---------------------------	20	-	1
	------------------------------------------------------------------CATGGTTAGATCAAGCACAAC---------------------------	21	1	-
rat	TGTAGAAAGCTGCGTGACGTTCCATGGTGCTTGACGGAACCATGTTTTACTCATACCTCGCAAGCACATGGTTAGATCAAGCACAACAGAAAATCTCGCTACGTTATCACTACA
human	-----------------------ATGGTGCTTGACGGAACCATGTTTTACTCATACCTCGCAACCACATGGTTAGATCAAGCACAAC---------------------------
mouse	-----------------------ATGGTGCTTGACGGAACCATGTTTTTCTCATACCTCGCAAGCACATGGTTAGATCAAGCACAAC---------------------------
	*********************** ********** *********************
	----------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000005477 ENSRNOG00000003840 Slit2
	.....<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.........	ENSRNOT00000053609 ENSRNOG00000035486 rno-mir-218-1
rat	.((((..(((.(((.((..(((....((((((((...((((((((....................))))))))...))))))))....)))..)).)))...)))....)))).	1.000 -33.65
human	...((((((((...((((((((....................))))))))...))))))))...	1.000 -21.35
mouse	...((((((((...((((((((.(((............))).))))))))...))))))))...	1.000 -21.70

rat	chromosome:14:67642357:67642470:1	Opposite_strand\|Intronic_coding\|ENSRNOT00000005477\|ENSRNOG00000003840 ## Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053609\|ENSRNOG00000035486 ## ENSRNOG00000035486\|miRNA\|rno-mir-218-1\|rno-mir-218-1 [Source:miRBase;Acc:MI0000958] ## ENSRNOG00000003840\|protein_coding\|Slit2\|Slit homolog 2 protein precursor (Slit-2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q9WVC1] ## {ASMIR: rno-mir-218-1-as}
human	chromosome:4:20138972:20139125:-1	Opposite_strand\|Intronic_coding\|ENST00000273739\|ENSG00000145147\|protein_coding\|Slit homolog 2 protein Precursor (Slit-2) [Contains Slit homolog 2 protein N-product;Slit homolog 2 protein C-product] [Source:UniProtKB/Swiss-Prot;Acc:O94813] ## Opposite_strand\|Boundary_non-coding\|ENST00000384999\|ENSG00000207732\|miRNA\|hsa-mir-218-1 [Source:miRBase;Acc:MI0000294] ## {ASMIR: hsa-mir-218-1-as}
mouse	chromosome:5:48615157:48615310:-1	Opposite_strand\|Intronic_coding\|ENSMUST00000033967\|ENSMUSG00000031558\|protein_coding\|slit homolog 2 (Drosophila) Gene [Source:MGI Symbol;Acc:MGI:1315205] ## Opposite_strand\|Boundary_non-coding\|ENSMUST00000083669\|ENSMUSG00000065603\|miRNA\|mmu-mir-218-1 [Source:miRBase;Acc:MI0000700] ## {ASMIR: mmu-mir-218-1-as}

rno-mir-122-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-122-as 3arm	0	0	0	0	2	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-122-as 3arm	0	0	0	0	0.000	0	0	0	0	0

block711636 (Antisense miRBase rno-mir-122-as) [miRBaseNonMapped_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-122-as	0.001	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	27	6	3arm	1	nd	0.35	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------ACACCAU---------------------------------------------------	2	novel
		len	cloning frequencies
			T3S1
	--------------------------------------------------------------------------AACACCATTGTCACACTCCA---------------------------------------	20	2
rat	------------GTAGACGGATAGCCTAGCAGTAGCTGTTTAGTGTGATGATGGCGTTTGATGTTTTGGACACAAACACCATTGTCACACTCCAGAGCTCTGCTAAGGAGAGTCTGT-AGGC-----------
human	GACATTTATCGAG-GGAAGGATTGCCTAGCAGTAGCTATTTAGTGTGATAATGGCGTTTGATAGTTTAGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAACTCTGT-AGCCACGAAGGTGTT
mouse	-------GTGGAGTGGACGGATTGCCTAGCAGTAGCTATTTAGTGTGATAATGGCGTTTGATGGTTTGGACACAAACACCATTGTCACACTCCACAGCTCTGCTAAGGAAAGTCTGTCAGGCAC---------
	* ********** ******* ******** * ************************ ************ * *** *
	----- --------------------------------------------------------------------------------------------------------- ---- -----	ENSRNOT00000045098 ENSRNOG00000030321 LOC502176
	..... ...........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......... .... .....	ENSRNOT00000053725 ENSRNOG00000035602 rno-mir-122
rat	((..((((((..((((((((.((((....(((((((..((((.(((((.((((...))))))))).))))..)))))))....)))))))))).))...)))))) ..))	1.000 -50.90
human	(((((((.(((.. ((.((..((.((((((((.((((....(((((((((((((.(((((...((....)).))))).)))))))))))))....)))))))))).)).))..)).. ..)).))))))))))	0.998 -51.60
mouse	.....((.(((((((..((((((((.((((....(((((((((((((.(((((.((.......))))))).)))))))))))))....)))))))))).))...)))))))..))..	1.000 -54.30

rat	chromosome:18:61512734:61512842:-1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053725\|ENSRNOG00000035602 ## Opposite_strand\|Intronic_coding\|ENSRNOT00000045098\|ENSRNOG00000030321 ## ENSRNOG00000030321\|protein_coding\|LOC502176\|Ab1-331. [Source:UniProtKB/TrEMBL;Acc:Q7TP86] ## ENSRNOG00000035602\|miRNA\|rno-mir-122\|rno-mir-122 [Source:miRBase;Acc:MI0000891] ## {ASMIR: rno-mir-122-as}
human	chromosome:18:54269262:54269392:-1	Opposite_strand\|Boundary_non-coding\|ENST00000385044\|ENSG00000207778\|miRNA\|hsa-mir-122 [Source:miRBase;Acc:MI0000442] ## {ASMIR: hsa-mir-122-as}
mouse	chromosome:18:65408490:65408606:-1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083468\|ENSMUSG00000065402\|miRNA\|mmu-mir-122 [Source:miRBase;Acc:MI0000256] ## {ASMIR: mmu-mir-122-as}

miRBaseNonMapped_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)

rno-mir-182

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-182 3arm	1551	73	489	418	129	195	48	89	971	1895
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-182 3arm	0.052	0.003	0.026	0.025	0.006	0.015	0.004	0.005	0.064	0.126

block1544439 (miRBaseNonMapped rno-mir-182) [miRBaseNonMapped_cloningHIGH_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseNonMapped rno-mir-182	0.325	no	no	0.39/0.55	18/25/0.78	0.0	1.2	3237	0	10	0	4	-3	3arm	1	nd	0.42	5	5858	10	na	na

		reads	miRBase family seed
seed	-----------------------------------UUGGCAA--------------------	5034	miR-182
seed	--------------------------------------GCAAUGG-----------------	330	novel
seed	---------------------------------------CAAUGGU----------------	226	novel
seed	-------------------------------------GGCAAUG------------------	160	novel
seed	------------------------------------UGGCAAU-------------------	78	novel
seed	----------------------------------------AAUGGUA---------------	22	novel
seed	-----------------------------------------AUGGUAG--------------	8	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	----------------------------------TTTGGCAATGGTAGAACTCACAC-----	23	401	3	53	67	21	26	3	3	294	604
	----------------------------------TTTGGCAATGGTAGAACTCACACC----	24	245	7	24	80	11	24	1	1	235	402
	----------------------------------TTTGGCAATGGTAGAACTCAC-------	21	389	6	78	49	7	22	-	1	113	268
	----------------------------------TTTGGCAATGGTAGAACTC---------	19	202	3	130	37	6	12	-	3	150	197
	----------------------------------TTTGGCAATGGTAGAACTCA--------	20	123	-	62	16	5	3	-	-	55	157
	----------------------------------TTTGGCAATGGTAGAACT----------	18	53	1	33	11	2	2	-	-	43	121
	-------------------------------------GGCAATGGTAGAACTCACAC-----	20	33	20	30	36	22	23	13	23	16	18
	--------------------------------------GCAATGGTAGAACTCACAC-----	19	18	13	29	30	20	19	9	18	9	14
	----------------------------------TTTGGCAATGGTAGAACTCACA------	22	41	1	12	12	-	7	-	-	24	72
	------------------------------------TGGCAATGGTAGAACTCACAC-----	21	5	2	15	25	8	19	2	15	7	5
	-------------------------------------GGCAATGGTAGAACTCAC-------	18	3	2	5	7	5	4	1	2	-	7
	-------------------------------------GGCAATGGTAGAACTCACACC----	21	6	3	-	7	4	1	3	5	3	3
	--------------------------------------GCAATGGTAGAACTCACACC----	20	4	5	2	4	2	5	2	5	1	2
	-----------------------------------TTGGCAATGGTAGAACTCACACC----	23	1	2	-	6	1	4	-	-	4	11
	-----------------------------------TTGGCAATGGTAGAACTCACAC-----	22	5	1	3	3	2	4	2	4	1	3
	------------------------------------TGGCAATGGTAGAACTCACACC----	22	4	2	1	8	2	3	2	1	3	1
	-------------------------------------GGCAATGGTAGAACTCACA------	19	4	-	2	5	2	6	-	1	3	1
	---------------------------------------CAATGGTAGAACTCACAC-----	18	3	1	2	2	1	1	5	2	2	1
	--------------------------------------GCAATGGTAGAACTCACA------	18	3	1	3	-	3	1	-	-	3	1
	------------------------------------TGGCAATGGTAGAACTCAC-------	19	-	-	1	5	2	3	-	2	1	-
	------------------------------------TGGCAATGGTAGAACTCACA------	20	3	-	2	-	2	1	2	1	1	1
	-----------------------------------TTGGCAATGGTAGAACTCAC-------	20	1	-	-	1	-	1	-	1	1	3
	----------------------------------------AATGGTAGAACTCACACC----	18	2	-	-	4	1	-	-	1	-	-
	-----------------------------------TTGGCAATGGTAGAACTCACA------	21	-	-	1	1	-	1	-	-	1	1
	-----------------------------------TTGGCAATGGTAGAACTC---------	18	1	-	-	-	-	2	1	-	-	-
	-----------------------------------TTGGCAATGGTAGAACTCA--------	19	1	-	1	-	-	-	-	-	-	2
	------------------------------------TGGCAATGGTAGAACTCA--------	18	-	-	-	2	-	-	1	-	-	-
	---------------------------------------CAATGGTAGAACTCACACC----	19	-	-	-	-	-	1	1	-	-	-
	-------------------------------------GGCAATGGTAGAACTCACACCG---	22	-	-	-	-	-	-	-	-	1	-
rno-miR-182	----------------------------------TTTGGCAATGGTAGAACTCACACCG---	25	-	-	-	-	-	-	-	-	-	-
rat	acgcgggtctagctgccggaggcctcccaccgttTTTGGCAATGGTAGAACTCACACCggta
	**************************************************************
rat	((.(((((....((((((...(((.............)))..)))))).....)).))))).	0.970 -18.22

rat

chromosome:4:57071295:57071356:-1

intergenic

miRBaseNonMapped_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK (1 loci)

rno-mir-219-2-as

Cloning frequencies
absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-219-2-as 5arm	4	3	2	3	1	3	2	9	3	4
rno-mir-219-2-as 3arm	0.500	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-219-2-as 5arm	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
rno-mir-219-2-as 3arm	0.000	0	0	0	0	0	0	0	0	0

sblock7836 (Antisense miRBase rno-mir-219-2-as) [miRBaseNonMapped_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS rno-mir-219-2-as	0.010	no	no	0.39/0.52	18/24/0.71	0.1 0.0	1.1 0.0	34 1	0 0	10 1	0 0	18 22	-1 15	5arm 3arm	1 2	nd nd	0.14 0.22	3 3	35	10	4	-2

Families
Member of family novel153 (seed GAAUUGC): rno-mir-219-1, rno-mir-219-2

		reads	miRBase family seed
seed	-------------------GAUGUCC--------------------------------------------------------------------------	32	novel
seed	--------------------AUGUCCA-------------------------------------------------------------------------	2	novel
seed	-------------------------------------------------------------GAAUUGC--------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	------------------AGATGTCCAGCCACAATTCTCG------------------------------------------------------------	22	2	1	-	1	-	-	2	-	3	1
	------------------AGATGTCCAGCCACAATTCTC-------------------------------------------------------------	21	1	-	1	1	-	2	-	3	-	1
	------------------AGATGTCCAGCCACAATTC---------------------------------------------------------------	19	1	1	-	1	1	-	-	2	-	1
	------------------AGATGTCCAGCCACAATTCT--------------------------------------------------------------	20	-	-	1	-	-	1	-	1	-	-
	-------------------GATGTCCAGCCACAATTCTCG------------------------------------------------------------	21	-	1	-	-	-	-	-	-	-	-
	------------------AGATGTCCAGCCACAATTCTCGG-----------------------------------------------------------	23	-	-	-	-	-	-	-	1	-	-
	-------------------GATGTCCAGCCACAATTC---------------------------------------------------------------	18	-	-	-	-	-	-	-	1	-	-
	------------------AGATGTCCAGCCACAATT----------------------------------------------------------------	18	-	-	-	-	-	-	-	1	-	-
	------------------AGATGTCCAGCCACAATTCTCGGT----------------------------------------------------------	24	-	-	-	-	-	-	-	-	-	1
	------------------------------------------------------------AGAATTGCGTTTGGACAA----------------------	18	1	-	-	-	-	-	-	-	-	-
rat	AGACCGGAGCTCAACCACAGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCAGTGGTGAAGCCCCTGAGTT
human	------------------AGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCA-------------------
mouse	------------------AGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATC--------------------
	**************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000060969 ENSRNOG00000026604 Ceecam1
	........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......	ENSRNOT00000053575 ENSRNOG00000035452 rno-mir-219-2
rat	.((((((.(((..(((((.(((((((((...((((((((((....)))............)))))))...))))))).)).)))))..)))..))).)))	0.740 -33.40
human	.(((((((((...((((((((((....)))............)))))))...))))))).)).	0.744 -17.80
mouse	...(((((((...((((((((((....)))............)))))))...)))))))...	0.744 -16.80

rat	chromosome:3:8833902:8834001:1	Opposite_strand\|Exonic_non-coding\|ENSRNOT00000053575\|ENSRNOG00000035452 ## Same_strand\|Boundary_non-coding\|ENSRNOT00000035930\|ENSRNOG00000026604 ## Same_strand\|Intronic_non-coding\|ENSRNOT00000060969\|ENSRNOG00000026604 ## ENSRNOG00000035452\|miRNA\|rno-mir-219-2\|rno-mir-219-2 [Source:miRBase;Acc:MI0000960] ## ENSRNOG00000026604\|protein_coding\|Ceecam1\|Glycosyltransferase 25 family member 3 (Cerebral endothelial cell adhesion molecule 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5U309] ## {SimpF: oe = 0.79 1 CpG} ## {ASMIR: rno-mir-219-2-as}
human	chromosome:9:130194696:130194835:1	Opposite_strand\|Boundary_non-coding\|ENST00000385220\|ENSG00000207955\|miRNA\|hsa-mir-219-2 [Source:miRBase;Acc:MI0000740] ## {SimpF: oe = 0.85 0 CpG,rank = 4 1 FirstEF,rank = 1 1 FirstEF} ## {ASMIR: hsa-mir-219-2-as}
mouse	chromosome:2:29701129:29701268:1	Opposite_strand\|Boundary_non-coding\|ENSMUST00000083551\|ENSMUSG00000065485\|miRNA\|mmu-mir-219-2 [Source:miRBase;Acc:MI0000741] ## {SimpF: oe = 0.79 1 CpG} ## {ASMIR: mmu-mir-219-2-as}

Back to summary page

other non-annotated miRBase miRNAs:

Page 1

Page 4

Page 6

miR-Intess™