miR-Intess™

other non-annotated miRBase miRNAs

miRBaseNonMapped_cloningOK_multiarm_DicerNOK_loopOverlap_randfoldOK (1 loci)

miRBaseNonMapped_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (1 loci)

rno-mir-150-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-150-as 3arm	0	1	0	0	0	1	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-150-as 3arm	0	0.000	0	0	0	0.000	0	0	0	0

block867763 (Antisense miRBase rno-mir-150-as) [miRBaseNonMapped_lenNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-150-as

0.037

no

no

0.62/0.63

19/24/0.50

2.5

0.0

2

0

2

0

11

-6

3arm

1

nd

0.32

4

2

2

na

na

		reads	miRBase family seed
seed	-------------------------UACCAGG---------------------------	1	novel
seed	------------------------------GGGUCUG----------------------	1	novel
		len	cloning frequencies
			T1S2	T3S2
	------------------------GTACCAGGGTCTGAGGCACAGCAC-----------	24	-	1
	-----------------------------AGGGTCTGAGGCACAGCAC-----------	19	1	-
rat	cccaagtccctgtcccccaggcctGTACCAGGGTCTGAGGCACAGCACtggtacaaggg
	***********************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000027992 ENSRNOG00000020623 LOC361571
	..<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	ENSRNOT00000053683 ENSRNOG00000035560 rno-mir-150
rat	(((..((((((((.((.(((((((......))))))).)).))))....)).))..)))	0.910 -23.10

rat

chromosome:1:95596100:95596158:-1

Same_strand|Boundary_non-coding|ENSRNOT00000056286|ENSRNOG00000020623 ## Opposite_strand|Exonic_non-coding|ENSRNOT00000053683|ENSRNOG00000035560 ## Same_strand|Intronic_non-coding|ENSRNOT00000027992|ENSRNOG00000020623 ## ENSRNOG00000035560|miRNA|rno-mir-150|rno-mir-150 [Source:miRBase;Acc:MI0000920] ## ENSRNOG00000020623|protein_coding|LOC361571|Aldehyde dehydrogenase family 16 member A1. [Source:UniProtKB/Swiss-Prot;Acc:Q3T1L0] ## {ASMIR: rno-mir-150-as}

miRBaseNonMapped_lenNOK_5varHIGH_randfoldOK (1 loci)

rno-mir-376a-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376a-as 5arm	0	0	0	1	0	0	0	0	1	2
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-376a-as 5arm	0	0	0	0.000	0	0	0	0	0.000	0.000

block1981445 (Antisense miRBase rno-mir-376a-as) [miRBaseNonMapped_lenNOK_5varHIGH_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-376a-as

0.010

no

no

0.42/0.45

19/21/0.50

1.2

0.0

4

0

3

0

31

6

5arm

1

nd

0.15

2

4

3

na

na

		reads	miRBase family seed
seed	----------------------------------UGGAUUU-------------------------------------------------------------------------------	2	novel
seed	--------------------------------CGUGGAU---------------------------------------------------------------------------------	1	novel
seed	---------------------------------GUGGAUU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2	T5S1	T5S2
	---------------------------------GTGGATTTTCCTCTACGAT--------------------------------------------------------------------	19	1	-	1
	--------------------------------CGTGGATTTTCCTCTACGAT--------------------------------------------------------------------	20	-	1	-
	-------------------------------ACGTGGATTTTCCTCTACGAT--------------------------------------------------------------------	21	-	-	1
rat	GTGGTTTCCCAAGCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATATCAAAGAACAACTCGATCCAG
human	-------------------------------ACGTGGATTTTCCTCTATGATTAATCATAAATAATGTACTCATAGAAGGAGAATCTACCT-----------------------------
mouse	------------GCAGCATTTGATACTGAAAACGTGGATTTTCCTCTACGATTAGTCATTAATATTGTACTCATAGAAGGAGAATCTACCTTTTAAATATCA------------------
	***************** ***** **** **** **************************
	.........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.......................	ENSRNOT00000053651 ENSRNOG00000035528 rno-mir-376a
rat	.(((..((..........(((((((...((((.(((((((((((((((.((...((((.......)).)))).)))).))))))))))).))))...))))))).........)).))).	0.780 -28.11
human	..((((((((((((((((((.....(((.....)))...))))))).)))))))))))..	1.000 -22.90
mouse	........(((((...((((.(((((((((((((((.((...((((.......)).)))).)))).))))))))))).))))...)))))	0.994 -23.00

rat	chromosome:6:134404672:134404791:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053651|ENSRNOG00000035528 ## ENSRNOG00000035528|miRNA|rno-mir-376a|rno-mir-376a [Source:miRBase;Acc:MI0003545] ## {ASMIR: rno-mir-376a-as}
human	chromosome:14:100576827:100576986:-1	intergenic ## {ASMIR: hsa-mir-376a-1-as}
mouse	chromosome:12:110961984:110962073:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000093571|ENSMUSG00000076043|miRNA|mmu-mir-376a [Source:miRBase;Acc:MI0000793] ## {ASMIR: mmu-mir-376a-as}

miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK (1 loci)

rno-mir-130a-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-130a-as 5arm	0	0	1	0	0	1	0	0	0	0
rno-mir-130a-as 3arm	4.500	1.500	0	1.500	17.500	8.500	3	8.500	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-130a-as 5arm	0	0	0.000	0	0	0.000	0	0	0	0
rno-mir-130a-as 3arm	0.000	0.000	0	0.000	0.001	0.001	0.000	0.000	0	0

sblock7914 (Antisense miRBase rno-mir-130a-as) [miRBaseNonMapped_lenNOK_cloningHIGH_multiarm_DicerOK_shortStem_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-130a-as

0.002

no

no

0.33/0.45

18/23/0.59

0.0 0.0

0.0 1.5

2 33

0 0

2 7

0 0

6 4

7 8

5arm 3arm

1 2

nd nd

0.18 0.21

2 2

59

8

1

2

		reads	miRBase family seed
seed	------------------------------------------------AGCACAA-------------------------	54	novel
seed	-------------------------------------------------GCACAAU------------------------	3	novel
seed	-------GCCCUUU------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2
	-----------------------------------------------TAGCACAATGTGAAAAGA---------------	18	2	2	-	-	2	6	2	2
	-----------------------------------------------TAGCACAATGTGAAAAGAGC-------------	20	-	-	-	-	9	2	1	3
	-----------------------------------------------TAGCACAATGTGAAAAGAGCTCC----------	23	3	-	-	-	3	3	-	1
	-----------------------------------------------TAGCACAATGTGAAAAGAG--------------	19	1	1	-	1	3	1	-	1
	-----------------------------------------------TAGCACAATGTGAAAAGAGCTC-----------	22	-	-	-	1	-	-	1	3
	------TGCCCTTTTAACATTGCACTGC----------------------------------------------------	22	-	-	1	-	-	1	-	-
	------------------------------------------------AGCACAATGTGAAAAGAGCTCC----------	22	-	-	-	-	2	-	-	-
	------------------------------------------------AGCACAATGTGAAAAGAGCTC-----------	21	-	-	-	-	1	-	-	-
rat	GGCCGATGCCCTTTTAACATTGCACTGCTCGGTACACGTGTAGACAGTAGCACAATGTGAAAAGAGCTCCGGCC------
human	GGCCAATGCCCTTTTAACATTGCACTGCTAGTGACAGGTGCAGACAGTAGCACAATGTGAAAAGAGCTCTGGCCAGCAGC
mouse	-----ATGCCCTTTTAACATTGCACTGCTCGGTACACGT-TAGACAGTAGCACAATGTGAAAAGAGCTC-----------
	************************ *  *** **  ****************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<      <<<<<	ENSRNOT00000053693 ENSRNOG00000035570 rno-mir-130a
rat	(((((..((.(((((.((((((..(((((...(((....)))...)))))..)))))).))))).))..)))))	1.000 -29.70
human	(((((..((.(((((.((((((...(((((.((...........)).))))))))))).))))).))..)))))......	0.952 -29.60
mouse	..((.(((((.(((((((((((((((.....)). .)).)))).)))..)))).))))).))..	0.999 -16.80

rat	chromosome:3:67949601:67949674:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053693|ENSRNOG00000035570 ## ENSRNOG00000035570|miRNA|rno-mir-130a|rno-mir-130a [Source:miRBase;Acc:MI0000903] ## {ASMIR: rno-mir-130a-as}
human	chromosome:11:57165248:57165327:-1	Opposite_strand|Exonic_non-coding|ENST00000385274|ENSG00000208009|miRNA|hsa-mir-130a [Source:miRBase;Acc:MI0000448] ## {ASMIR: hsa-mir-130a-as}
mouse	chromosome:2:84581247:84581360:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083550|ENSMUSG00000065484|miRNA|mmu-mir-130a [Source:miRBase;Acc:MI0000156] ## {ASMIR: mmu-mir-130a-as}

miRBaseNonMapped_lenNOK_cloningOK (1 loci)

rno-let-7a-2-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7a-2-as 3arm	2	2.500	0.500	1	0	0	0	0.500	2.500	2.500
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-let-7a-2-as 3arm	0.000	0.000	0.000	0.000	0	0	0	0.000	0.000	0.000

block2301627 (Antisense miRBase rno-let-7a-2-as) [miRBaseNonMapped_lenNOK_cloningOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-let-7a-2-as

0.190

no

no

0.36/0.42

18/22/0.13

0.2

0.4

16

0

7

0

26

0

3arm

2

nd

0.28

1

23

7

na

na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UAUACAA------------------------------------------------	21	let-7b*
seed	------------------------------------------------------------------------------------ACUAUAC--------------------------------------------------	2	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T4S2	T5S1	T5S2
	-------------------------------------------------------------------------------------CTATACAACCTACTACCT--------------------------------------	18	3	3	-	1	1	4	2
	-------------------------------------------------------------------------------------CTATACAACCTACTACCTC-------------------------------------	19	-	2	1	1	-	1	1
	-----------------------------------------------------------------------------------AACTATACAACCTACTACCTCA------------------------------------	22	-	-	-	-	-	-	2
	-------------------------------------------------------------------------------------CTATACAACCTACTACCTCA------------------------------------	20	1	-	-	-	-	-	-
rat	-----------------GTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGTTGTAACTCTAAACTATACAACCTACTACCTCAGCCTGGGAGCATGCCGTCACAGTGGC----------
human	-------TTCTCACCATGTTGTTTAGTGCAAGACCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGATGTAATTCTAAACTATACAACCTACTACCTCAACCTGGGAGCATGCAGTCACAATGGCTGGAA-----
mouse	TAGCTCGTTCTTGCCATGTTGCTTTGTGCAAGTCCCAAGGAAAGCTAGGAGGCTGTACAGTTATCTCCCTTGATGTAACTCTAAACTATACAACCTACTACCTCAACCTGGGAACATGCAGTCACAATGGCTGGAGAGCTA
	**** ** ******* *************************************** ***** ************************** ******* ***** ****** ****
	.....                 ........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..........          .....	ENSRNOT00000053671 ENSRNOG00000035548 rno-let-7a-2
rat	((..((.((.(((.(((((.(((..((.(((.(((.((((.((((.....................)))).)))).))).))).))...)))))).)).)))...)).))..))	0.920 -29.80
human	.(((..((((..((....((((....(((.(((..((.(((.(((.((((.(((((((......)))).........))).)))).))).))).))...)))))).)))).....))..))))..))).	0.927 -29.80
mouse	((((((..(((.(((((((.((....((((..((((.(((..((.(((.(((.((((.(((((((......)))).........))).)))).))).))).))...)))))))...)))))).))).)))).)))))))))	0.985 -43.80

rat	chromosome:8:44525759:44525872:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053671|ENSRNOG00000035548 ## ENSRNOG00000035548|miRNA|rno-let-7a-2|rno-let-7a-2 [Source:miRBase;Acc:MI0000828] ## {ASMIR: rno-let-7a-2-as}
human	chromosome:11:121522410:121522538:1	Opposite_strand|Boundary_non-coding|ENST00000362105|ENSG00000198975|miRNA|hsa-let-7a-2 [Source:miRBase;Acc:MI0000061] ## {ASMIR: hsa-let-7a-2-as}
mouse	chromosome:9:41344779:41344919:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083680|ENSMUSG00000065614|miRNA|mmu-let-7a-2 [Source:miRBase;Acc:MI0000557] ## {ASMIR: mmu-let-7a-2-as}

miRBaseNonMapped_lenNOK_cloningOK_randfoldOK_bulgeHIGH (1 loci)

rno-mir-191-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-191-as 5arm	1	1	0	0	6	7	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-191-as 5arm	0.000	0.000	0	0	0.000	0.001	0	0	0	0

block2356090 (Antisense miRBase rno-mir-191-as) [miRBaseNonMapped_lenNOK_cloningOK_randfoldOK_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-191-as

0.001

no

no

0.44/0.52

18/23/0.60

0.0

0.9

9

0

4

0

28

8

5arm

1

nd

0.24

4

15

4

na

na

		reads	miRBase family seed
seed	------------------------------------------------AACGAAA----------------------------------------------------------------------------------------------------	15	novel
		len	cloning frequencies
			T1S1	T1S2	T3S1	T3S2
	-----------------------------------------------GAACGAAATCCAAGTGCAGC----------------------------------------------------------------------------------------	20	-	-	1	4
	-----------------------------------------------GAACGAAATCCAAGTGCA------------------------------------------------------------------------------------------	18	1	-	3	-
	-----------------------------------------------GAACGAAATCCAAGTGCAGCT---------------------------------------------------------------------------------------	21	-	1	-	2
	-----------------------------------------------GAACGAAATCCAAGTGCAG-----------------------------------------------------------------------------------------	19	-	-	1	1
	-----------------------------------------------GAACGAAATCCAAGTGCAGCTGG-------------------------------------------------------------------------------------	23	-	-	1	-
rat	-------------------CAGGGCGCTGCTCAGGCAGGAGAGCAGGGAACGAAATCCAAGTGCAGCTGGAATGCTCTGGAGACAACAGCTGCTTTTGGGATTCCGTTGCCCGCTGTCCAGCCATTGGAGGAGGGCTCT----------------
mouse	GAGACCACATTATCTGGGCCAGGGCGCTGCTCAGGCAGGAGAGCAGGGAACGAAATCCAAGTGCAGCTGGAATGCTCTGGAGACAACAGCTGCTTTTGGGATTCCGTTGCCCGCTGTCCAGCCATTGGAGGAGGGCTCTTGCTCCCAGGTCACTC
	************************************************************************************************************************
	.....                   .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................                .....	ENSRNOT00000053579 ENSRNOG00000035456 rno-mir-191
rat	.(((((.((.(((.(((.(((.(((.((.((((.(((((....(((((((...((((....)).)).))))))).....))))).)))).)).))).))).)))....))).)).)))))	0.990 -60.40
mouse	..((((.........((((.(((((.((.(((.(((.(((.(((.((.((((.(((((....(((((((...((((....)).)).))))))).....))))).)))).)).))).))).)))....))).)).))))).))))...))))....	0.974 -70.60

rat	chromosome:8:113614344:113614463:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053579|ENSRNOG00000035456 ## ENSRNOG00000035456|miRNA|rno-mir-191|rno-mir-191 [Source:miRBase;Acc:MI0000934] ## {ASMIR: rno-mir-191-as}
mouse	chromosome:9:108470610:108470764:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083681|ENSMUSG00000065615|miRNA|mmu-mir-191 [Source:miRBase;Acc:MI0000233] ## {ASMIR: mmu-mir-191-as}

miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK (1 loci)

rno-mir-541-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-541-as 3arm	0	1	3	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-541-as 3arm	0	0.000	0.000	0	0	0	0	0	0	0

block1981452 (Antisense miRBase rno-mir-541-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-541-as

0.001

no

no

0.50/0.50

18/18/0.00

0.0

0.0

4

0

2

0

30

-2

3arm_loop

1

nd

0.28

3

4

2

na

na

Clusters

Located in cluster 64: rno-mir-541, rno-mir-409, rno-mir-412, rno-mir-369

Families

Member of family miR-122 (seed GGAGUGU): rno-mir-122, rno-mir-541, block435912_cand, block1251548_cand, block1623670_cand, block2486258_cand

		reads	miRBase family seed
seed	---------------------------------------------------------GGAGUGU----------------------------------------	4	miR-122
		len	cloning frequencies
			T1S2	T2S1
	--------------------------------------------------------TGGAGTGTGACCAACATC------------------------------	18	1	3
rat	gacttaggccataagcagagtatggattctgtgttcgccactcattttaaaattctTGGAGTGTGACCAACATCagaatcccttctctgattttggcaagagtt
	********************************************************************************************************
	............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............	ENSRNOT00000054594 ENSRNOG00000036486 rno-mir-541
rat	(((((..((((....(((((...((((((((((((((.(((((...............))))))))...))).))))))))...)))))....))))..)))))	1.000 -38.96

rat

chromosome:6:134423733:134423836:-1

Opposite_strand|Exonic_non-coding|ENSRNOT00000054594|ENSRNOG00000036486 ## ENSRNOG00000036486|miRNA|rno-mir-541|rno-mir-541 [Source:miRBase;Acc:MI0003527] ## {ASMIR: rno-mir-541-as}

miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_bulgeHIGH (1 loci)

rno-mir-145-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-145-as 3arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-145-as 3arm	0	0	0	0	0	0	0	0	0	0.000

block750146 (Antisense miRBase rno-mir-145-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-145-as

0.001

no

no

0.52/0.52

25/25/0.00

0.0

0.0

1

0

1

0

28

-2

3arm_loop

1

nd

0.28

5

1

1

na

na

Families

Member of family miR-541 (seed AGGGAUU): rno-mir-541, rno-mir-145

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------AGGGAUU----------------------------------------------------------------	1	miR-541
		len	cloning frequencies
			T5S2
	------------------------------------------------------------------------------------AAGGGATTCCTGGGAAAACTGGACC-----------------------------------------------	25	1
rat	-----------------AGGCAGATCCAGCTGTTAAGCCATGACCTCAAGAACAGTATTTCCAGGAATCCCCATCTTAGCATCCAAGGGATTCCTGGGAAAACTGGACCGTGAGGACAAGGTGGGAGAGAGATGCCT-------------------
human	ACTGTGGGGTGGGAAGGAGGCAAATCCAGCTGTGAAACCATGACCTCAAGAACAGTATTTCCAGGAATCCCCATCTTAGCATCTAAGGGATTCCTGGGAAAACTGGACCGTGAGGACAAGGTGGGAGCGAGTGGCCTTCAGCGCCAAGGCCGCCGT
mouse	---------------------------------------------------ACAGTATTTCCAGGAATCCCCATCTTAGCATCCAAGGGATTCCTGGGAAAACTGG--------------------------------------------------
	******************************** **********************
	.....                 ..................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..............                   .....	ENSRNOT00000053597 ENSRNOG00000035474 rno-mir-145
rat	(((((.......((.((..(((.((.(((((....((((.((((((((((((((...............)))))))))))))).)))).....))))).)).)))..)).))...)))))	0.990 -51.66
human	....((((((.((..((((((...((..(((.....(((.((.(((((....((((.((((((((((((((....((((...)))))))))))))))))).)))).....))))).)).)))...)))))...))))))....))...))).))).	0.860 -63.30
mouse	.((((.((((((((((((((...............)))))))))))))).)))).	1.000 -28.46

rat	chromosome:18:57623729:57623848:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053597|ENSRNOG00000035474 ## ENSRNOG00000035474|miRNA|rno-mir-145|rno-mir-145 [Source:miRBase;Acc:MI0000918] ## {ASMIR: rno-mir-145-as}
human	chromosome:5:148790369:148790524:-1	Opposite_strand|Boundary_non-coding|ENST00000384967|ENSG00000207700|miRNA|hsa-mir-145 [Source:miRBase;Acc:MI0000461] ## {ASMIR: hsa-mir-145-as}
mouse	chromosome:18:61807432:61807591:1	Opposite_strand|Boundary_non-coding|ENSMUST00000083658|ENSMUSG00000065592|miRNA|mmu-mir-145 [Source:miRBase;Acc:MI0000169] ## {ASMIR: mmu-mir-145-as}

miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH (1 loci)

rno-mir-17-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-17-1-as 3arm	0	0	0	0	0	1	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-17-1-as 3arm	0	0	0	0	0	0.000	0	0	0	0

block466802 (Antisense miRBase rno-mir-17-1-as) [miRBaseNonMapped_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-17-1-as

0.009

no

no

0.47/0.47

19/19/0.00

0.0

0.0

1

0

1

0

27

-2

3arm_loop

1

nd

0.32

3

1

1

na

na

		reads	miRBase family seed
seed	----------------------------------------------------CCACUAC--------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	---------------------------------------------------ACCACTACCTGCACTGTAA---------------------------	19	1
rat	ggcagctgtcagcacaatgccacaagtgccttcactgcagtagatgcacacACCACTACCTGCACTGTAAgcactttgacattatcctgaccggtcg
	*************************************************************************************************
	............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...........	ENSRNOT00000053780 ENSRNOG00000035657 rno-mir-17-1
rat	(((....(((((...((((.((.((((((...((.((((((((.((.......)))))).)))).))...)))))))).))))...)))))..))).	0.990 -29.40

rat

chromosome:15:99853729:99853825:-1

Opposite_strand|Exonic_non-coding|ENSRNOT00000053780|ENSRNOG00000035657 ## ENSRNOG00000035657|miRNA|rno-mir-17-1|rno-mir-17-1 [Source:miRBase;Acc:MI0000845] ## {ASMIR: rno-mir-17-1-as}

miRBaseNonMapped_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (1 loci)

rno-mir-9-2-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-2-as 5arm	0.333	0.333	0	0	0	0	0	0	0	0
rno-mir-9-2-as 3arm	3.333	0.333	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-2-as 5arm	0.000	0.000	0	0	0	0	0	0	0	0
rno-mir-9-2-as 3arm	0.000	0.000	0	0	0	0	0	0	0	0

sblock6315 (Antisense miRBase rno-mir-9-2-as) [miRBaseNonMapped_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-9-2-as

0.001

no

no

0.32/0.39

18/23/0.57

0.0 2.0

0.5 0.8

2 5

0 0

2 2

0 0

34 29

2 -4

5arm 3arm

3 3

nd nd

0.11 0.06

1 1

7

2

-6

-1

Families

Member of family novel57 (seed UCGGUUA): rno-mir-9-3, rno-mir-9-1, rno-mir-9-2

		reads	miRBase family seed
seed	------------------------------------------------------------------CACUCAU----------------------------------------------------	3	novel
seed	-------------------------------------UCGGUUA---------------------------------------------------------------------------------	2	novel
seed	----------------------------------------------------------------------CAUACAG------------------------------------------------	1	novel
seed	------------------------------------------------------------------------UACAGCU----------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	-----------------------------------------------------------------ACACTCATACAGCTAGATAACCA-------------------------------------	23	3	-
	------------------------------------TTCGGTTATCTAGCTTTA-----------------------------------------------------------------------	18	-	1
	-----------------------------------------------------------------------ATACAGCTAGATAACCAA------------------------------------	18	1	-
	---------------------------------------------------------------------TCATACAGCTAGATAACCAAAG----------------------------------	22	-	1
	------------------------------------TTCGGTTATCTAGCTTTAT----------------------------------------------------------------------	19	1	-
rat	--AGCACTCCTCGGTGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTCCCTCACAAGGCTGT-----
human	------------GGCGATCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTC-------------------
mouse	GGAACGTTCCTCGGTGACCTTGAAGGAGTTTTTACTTTCGGTTATCTAGCTTTATGAAGACCAATACACTCATACAGCTAGATAACCAAAGATAACAACTCGCTTCCCTCACAAGGCTGCCTTCC
	** ** ****************************************************************************************
	.....  ..................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............     .....	ENSRNOT00000053751 ENSRNOG00000035628 rno-mir-9-2
rat	.(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).))).)))	1.000 -42.20
human	.........(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))	0.984 -34.80
mouse	((((.((.(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).)))..)).))))	0.935 -46.70

rat	chromosome:2:12259488:12259605:1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053751|ENSRNOG00000035628 ## ENSRNOG00000035628|miRNA|rno-mir-9-2|rno-mir-9-2 [Source:miRBase;Acc:MI0000840] ## {ASMIR: rno-mir-9-2-as}
human	chromosome:5:87998419:87998512:1	Opposite_strand|Boundary_non-coding|ENST00000384838|ENSG00000207570|miRNA|hsa-mir-9-2 [Source:miRBase;Acc:MI0000467] ## {ASMIR: hsa-mir-9-2-as}
mouse	chromosome:13:83878393:83878517:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083490|ENSMUSG00000065424|miRNA|mmu-mir-9-2 [Source:miRBase;Acc:MI0000157] ## {ASMIR: mmu-mir-9-2-as}

miRBaseNonMapped_lenNOK_multiarm_DicerNOK_randfoldOK (1 loci)

rno-mir-9-1-as

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-1-as 5arm	0.333	0.333	0	0	0	0	0	0	0	0
rno-mir-9-1-as 3arm	0.333	0.333	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
rno-mir-9-1-as 5arm	0.000	0.000	0	0	0	0	0	0	0	0
rno-mir-9-1-as 3arm	0.000	0.000	0	0	0	0	0	0	0	0

sblock6143 (Antisense miRBase rno-mir-9-1-as) [miRBaseNonMapped_lenNOK_multiarm_DicerNOK_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

miRBaseAS rno-mir-9-1-as

0.001

no

no

0.32/0.36

18/22/0.25

0.0 1.0

0.5 1.0

2 2

0 0

2 2

0 0

26 25

2 0

5arm 3arm

3 3

nd nd

0.11 0.06

1 1

4

2

-2

2

Families

Member of family novel152 (seed CAUACAG): rno-mir-9-3, rno-mir-9-1

		reads	miRBase family seed
seed	---------------------------UCGGUUA--------------------------------------------------------------------------	2	novel
seed	--------------------------------------------------------------CAUACAG---------------------------------------	1	novel
seed	----------------------------------------------------------------UACAGCU-------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	---------------------------------------------------------------ATACAGCTAGATAACCAA---------------------------	18	1	-
	--------------------------TTCGGTTATCTAGCTTTA----------------------------------------------------------------	18	-	1
	--------------------------TTCGGTTATCTAGCTTTAT---------------------------------------------------------------	19	1	-
	-------------------------------------------------------------TCATACAGCTAGATAACCAAAG-------------------------	22	-	1
rat	GCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCCGCCTCCTGGC
human	GCGCAGTGTATGGGGTTATTTTTACTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAGATAACAACCAACCCC----------
mouse	------------------------CTTTCGGTTATCTAGCTTTATGAAGACTCCACACCACTCATACAGCTAGATAACCAAAG-------------------------
	***********************************************************
	...............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..............	ENSRNOT00000053674 ENSRNOG00000035551 rno-mir-9-1
rat	((.(((....(((((((.((.(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).))..)))))))....)))))	0.980 -38.34
human	...........((((((.((.(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).))..))))))	0.901 -32.84
mouse	((((.((((((((((((.(((((..............))))).))))))))))))))))	1.000 -23.24

rat	chromosome:2:180293000:180293107:-1	Opposite_strand|Exonic_non-coding|ENSRNOT00000053674|ENSRNOG00000035551 ## ENSRNOG00000035551|miRNA|rno-mir-9-1|rno-mir-9-1 [Source:miRBase;Acc:MI0000838] ## {ASMIR: rno-mir-9-1-as}
human	chromosome:1:154656747:154656844:1	Opposite_strand|Intronic_coding|ENST00000368244|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## Opposite_strand|Boundary_non-coding|ENST00000368242|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## Opposite_strand|Intronic_non-coding|ENST00000368243|ENSG00000125462|protein_coding|Protein CROC-4 (Contingent replication of cDNA 4) [Source:UniProtKB/Swiss-Prot;Acc:Q13536] ## {SimpF: rank = 1 -1 FirstEF,oe = 0.88 0 CpG} ## {ASMIR: hsa-mir-9-1-as}
mouse	chromosome:3:88019481:88019628:-1	Opposite_strand|Boundary_non-coding|ENSMUST00000083570|ENSMUSG00000065504|miRNA|mmu-mir-9-1 [Source:miRBase;Acc:MI0000720] ## {SimpF: oe = 0.80 -1 CpG} ## {ASMIR: mmu-mir-9-1-as}

Back to summary page

other non-annotated miRBase miRNAs:

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