========== block2895963 (miRNA) [miRNAunknown_cloningOK_randfoldOK] ========== #randfold block2895963: 0.004 #forester #identity: 0.00 block2895963 TGATCAGTGCCTTTCTGAGTAGA #rat_gr954837_libT5S1 23 3 block2895963 CAGTGCCTTTCTGAGTAGA #rat_gr304592_libT5S1 19 2 block2895963 TGATCAGTGCCTTTCTGAGT #rat_gr954834_libT5S1 20 2 block2895963 TGATCAGTGCCTTTCTGAGTAGAG #rat_gr954838_libT5S1 24 1 block2895963 TGATCAGTGCCTTTCTGAGTAGA #rat_gr954837_libT1S2 23 1 block2895963 TGATCAGTGCCTTTCTGAGTAG #rat_gr954836_libT3S2 22 1 block2895963 TGATCAGTGCCTTTCTGAGTAG #rat_gr954836_libT5S1 22 1 block2895963 TGATCAGTGCCTTTCTGAGTA #rat_gr954835_libT2S2 21 1 block2895963 GATCAGTGCCTTTCTGAGT #rat_gr519912_libT1S2 19 1 block2895963 TGATCAGTGCCTTTCTGAGT #rat_gr954834_libT1S1 20 1 block2895963 TGATCAGTGCCTTTCTGA #rat_gr954833_libT5S1 18 1 block2895963 aagggcttggatgcagtgccctatttagaacggtgctggtgtgatgaatgaagttTGATCAGTGCCTTTCTGAGTAGAGtaaggcttaccacattct ************************************************************************************************* block2895963 ................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.............. #ENSRNOT00000062157 ENSRNOG00000040404 block2895963 .((((..(((..((..(((.((((((((((.((..(((((..(((.......)))..)))))..)).)))))))))).)))..))...)))..)))) 1.000 -34.90 # #block2895963 chromosome:X:152868872:152868968:-1 Same_strand|Exonic_non-coding|ENSRNOT00000062157|ENSRNOG00000040404 ## ENSRNOG00000040404|miRNA|| ========== block7023 [novel_cloningHIGH_mirtron_randfoldOK] ========== #randfold block7023: 0.004 randfold mouseZ2p5_block7023: 0.002 #forester mouseZ2p5_block7023: 0.966832 #identity: 98.86 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT1S1 21 460 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT1S2 21 388 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT1S1 19 97 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT1S2 20 84 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT1S1 20 81 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT1S2 19 74 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT1S1 18 67 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT1S2 18 66 block7023 TGAGCACCACCCCTCTCTCAGA #rat_gr943181_libT1S2 22 27 block7023 TGAGCACCACCCCTCTCTCAGA #rat_gr943181_libT1S1 22 22 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT3S1 21 16 block7023 TGAGCACCACCCCTCTCTCAGAT #rat_gr943182_libT1S1 23 13 block7023 TGAGCACCACCCCTCTCTCAGAT #rat_gr943182_libT1S2 23 13 block7023 GAGCACCACCCCTCTCTCAG #rat_gr507164_libT1S1 20 6 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT3S2 21 5 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT5S1 21 5 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT2S1 21 4 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT3S1 20 4 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT3S2 19 4 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT4S2 21 3 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT3S1 19 3 block7023 TGAGCACCACCCCTCTCTCAGA #rat_gr943181_libT2S1 22 2 block7023 TGAGCACCACCCCTCTCTCAGA #rat_gr943181_libT3S1 22 2 block7023 TGAGCACCACCCCTCTCTCAGA #rat_gr943181_libT3S2 22 2 block7023 AGCACCACCCCTCTCTCAG #rat_gr150654_libT1S2 19 2 block7023 GAGCACCACCCCTCTCTCAG #rat_gr507164_libT1S2 20 2 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT5S2 21 2 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT3S2 20 2 block7023 CTGAGCACCACCCCTCTCTCA #rat_gr438634_libT1S1 21 2 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT2S1 19 2 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT4S2 18 2 block7023 CTGAGCACCACCCCTCTC #rat_gr438631_libT1S1 18 2 block7023 AGCACCACCCCTCTCTCAGAT #rat_gr150656_libT1S1 21 1 block7023 GAGCACCACCCCTCTCTCAGAT #rat_gr507165_libT1S2 22 1 block7023 AGCACCACCCCTCTCTCAGA #rat_gr150655_libT1S2 20 1 block7023 CTGAGCACCACCCCTCTCTCAGA #rat_gr438635_libT1S1 23 1 block7023 GCACCACCCCTCTCTCAG #rat_gr529751_libT1S1 18 1 block7023 AGCACCACCCCTCTCTCAG #rat_gr150654_libT1S1 19 1 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT2S2 21 1 block7023 TGAGCACCACCCCTCTCTCAG #rat_gr943180_libT4S1 21 1 block7023 AGCACCACCCCTCTCTCA #rat_gr150653_libT1S1 18 1 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT4S2 20 1 block7023 TGAGCACCACCCCTCTCTCA #rat_gr943179_libT5S1 20 1 block7023 CTGAGCACCACCCCTCTCTCA #rat_gr438634_libT2S2 21 1 block7023 TCTGAGCACCACCCCTCTCTCA #rat_gr905092_libT1S1 22 1 block7023 GAGCACCACCCCTCTCTC #rat_gr507163_libT1S2 18 1 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT4S2 19 1 block7023 TGAGCACCACCCCTCTCTC #rat_gr943178_libT5S2 19 1 block7023 CTGAGCACCACCCCTCTCTC #rat_gr438633_libT1S1 20 1 block7023 CTGAGCACCACCCCTCTCTC #rat_gr438633_libT1S2 20 1 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT2S1 18 1 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT3S1 18 1 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT5S1 18 1 block7023 TGAGCACCACCCCTCTCT #rat_gr943177_libT5S2 18 1 block7023 CTGAGCACCACCCCTCTCT #rat_gr438632_libT1S1 19 1 block7023 CTGACTTCCAAGGTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCCGCTCTTGTTCTGAGCACCACCCCTCTCTCAGATGGTGGCAG mouseZ2p5 ------------GTGGGAAGAGGGGTGGGGCCCGGGACTGTACCCATGTGAGGACTATTCTTGAGTCCTGCTCTTGTTCTGAGCACCACCCCTCTCTCAG---------- ******************************************************** ******************************* block7023 >>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000024072 ENSRNOG00000017893 LOC685297 block7023 (((.((.(((...((((.((((((((((.((.((((((.........(((.(((((.......))))))))....)))))).)).))))))))))))))..))).))))) 0.910 -50.32 # mouseZ2p5 .((((.((((((((((.((.((((((.........((.((((((.......))))))))....)))))).)).)))))))))))))). 0.534 -42.72 # #block7023 chromosome:10:14493066:14493175:-1 Same_strand|Boundary_coding|ENSRNOT00000024072|ENSRNOG00000017893 ## ENSRNOG00000017893|protein_coding|LOC685297| #mouseZ2p5 chromosome:17:25382466:25382615:-1 Same_strand|Boundary_coding|ENSMUST00000056357|ENSMUSG00000047507|protein_coding|BAI1-associated protein 3 Gene [Source:MGI Symbol;Acc:MGI:2685783] ========== block15416 [novel_cloningOK_randfoldOK] ========== #randfold block15416: 0.001 randfold mouseZ11p5_block15416: 0.001 #forester mouseZ11p5_block15416: 0.68697 #identity: 86.67 block15416 TCCCATCTTCTCAGAGCCACGAC #rat_gr840263_libT2S1 23 2 block15416 TCCCATCTTCTCAGAGCCAC #rat_gr840261_libT3S1 20 2 block15416 TCCCATCTTCTCAGAGCCACGAC #rat_gr840263_libT2S2 23 1 block15416 TCCCATCTTCTCAGAGCCACGAC #rat_gr840263_libT3S1 23 1 block15416 TCCCATCTTCTCAGAGCCACGAC #rat_gr840263_libT5S1 23 1 block15416 TCCCATCTTCTCAGAGCCACGAC #rat_gr840263_libT5S2 23 1 block15416 CTCCCATCTTCTCAGAGCCACGAC #rat_gr422713_libT5S2 24 1 block15416 TCCCATCTTCTCAGAGCCACG #rat_gr840262_libT2S1 21 1 block15416 TCCCATCTTCTCAGAGCCACG #rat_gr840262_libT3S1 21 1 block15416 TCCCATCTTCTCAGAGCCAC #rat_gr840261_libT2S1 20 1 block15416 TCCCATCTTCTCAGAGCCAC #rat_gr840261_libT5S1 20 1 block15416 TCCCATCTTCTCAGAGCCAC #rat_gr840261_libT5S2 20 1 block15416 CTCCCATCTTCTCAGAGCCAC #rat_gr422712_libT1S1 21 1 block15416 CTCCCATCTTCTCAGAGCCAC #rat_gr422712_libT3S2 21 1 block15416 CTCCCATCTTCTCAGAGCCAC #rat_gr422712_libT5S2 21 1 block15416 TCCCATCTTCTCAGAGCCA #rat_gr840260_libT2S2 19 1 block15416 TCCCATCTTCTCAGAGCC #rat_gr840259_libT2S1 18 1 block15416 AGAGCTGCCCACGGCTTTATTTATGAGTCTGGCTTTGAGAAGCTGGGGAGAGGTAACCTGCTTC-CTCCCATCTTCTCAGAGCCACGACTCAAGAAGAAAAGGGTGCTC mouseZ11p5 ---------------------------TGTGGCTTTGAGGAGTTGGGAAGAGGTAACCCACTTCTCTCCCATCTTCTCCGAGCCATGA--------------------- * ********** ** **** ********** **** ************* ****** ** block15416 .((((.((((....((((.....(((((((((((((((((((.((((..(((((.....))))) ..)))).))))))))))))).)))))).))))....)))))))) 1.000 -58.40 # mouseZ11p5 .(((((((.((((((.(((((((((((.....)))))).))))).)))))).))))))).. 1.000 -33.60 # #block15416 chromosome:10:35815151:35815258:-1 intergenic #mouseZ11p5 chromosome:11:50069432:50069579:-1 Same_strand|Exonic_non-coding|ENSMUST00000102771|ENSMUSG00000050567|protein_coding|mastermind like 1 (Drosophila) Gene [Source:MGI (curated);Acc:Maml1-001] ========== block82617 [novel_cloningOK_randfoldOK] ========== #randfold block82617: 0.001 randfold humanZ12p8_block82617: 0.001 randfold mouseZ28p8_block82617: 0.001 #forester humanZ12p8_block82617: 0.62838 forester mouseZ28p8_block82617: 0.897116 #identity: 90.28 block82617 CCAGGGCCTGTCTCCCCTCCT #rat_gr334031_libT5S2 21 5 block82617 CCAGGGCCTGTCTCCCCTCC #rat_gr334030_libT3S1 20 3 block82617 CCAGGGCCTGTCTCCCCTCC #rat_gr334030_libT5S2 20 2 block82617 CCAGGGCCTGTCTCCCCTCCT #rat_gr334031_libT1S1 21 2 block82617 CCAGGGCCTGTCTCCCCTCCT #rat_gr334031_libT3S1 21 2 block82617 CCCAGGGCCTGTCTCCCCTCCT #rat_gr344324_libT1S1 22 1 block82617 CCAGGGCCTGTCTCCCCT #rat_gr334029_libT5S2 18 1 block82617 CCAGGGCCTGTCTCCCCTCC #rat_gr334030_libT1S2 20 1 block82617 CCAGGGCCTGTCTCCCCTCC #rat_gr334030_libT3S2 20 1 block82617 CCAGGGCCTGTCTCCCCTCC #rat_gr334030_libT4S2 20 1 block82617 CCAGGGCCTGTCTCCCCTCCT #rat_gr334031_libT3S2 21 1 block82617 CCAGGGCCTGTCTCCCCTCCT #rat_gr334031_libT4S2 21 1 block82617 ------------TGGTGCTTCAGCCCTGGCCCCTGGGGGGAGCAGGTCTCGGGGTTATCAAGGGCTGGAAAT--GTGATCCCAGGGCCTGTCTCCCCTCCTGGGCAGGGCGGACATGCCTTGGTGCCAG humanZ12p8 GGTGCCTCCAATTGGTGCTTCAGCCCTGGCCCCTGTGGGGAACAGGTCTTGGGGTCATGAAGGGCTGGAAACAAGTGACCCCAGGGCCTGTCTCCCTTCTTGGGTAGGGCAGACATGCCTTGGTGCC-- mouseZ28p8 --------------------------------CTGGGGGGAGCAGGTCTCGGGGTTATCAAGGGCTGGAAAC--ACGATCCCAGGGCCTGTCTCCCCTCCT---------------------------- *** ***** ******* ***** ** ************ ** ***************** ** * block82617 (((..((((.(((((.((((..((((((((((((((..((((((((.............. ))))))))..)))))).))))))))..))))))))).))........))..))). 0.750 -64.54 # humanZ12p8 ((..((.......((((..((.(((((.((((....((((((((((((((((((((((.......((....)).))))))))))))))))).)))))....))))))))).))..))))..))..)) 0.923 -69.70 # mouseZ28p8 ..((((((((((((((..((((((.........((....) ).))))))..)))))).)))))))).. 0.938 -36.80 # #block82617 chromosome:10:64476780:64476894:1 intergenic #humanZ12p8 chromosome:17:24100871:24100997:1 Same_strand|Exonic_non-coding|ENST00000262395|ENSG00000076604|protein_coding|TNF receptor-associated factor 4 (Cysteine-rich domain associated with RING and Traf domains protein 1)(Malignant 62)(RING finger protein 83) [Source:UniProtKB/Swiss-Prot;Acc:Q9BUZ4] ## Same_strand|Boundary_non-coding|ENST00000394925|ENSG00000076604|protein_coding|TNF receptor-associated factor 4 (Cysteine-rich domain associated with RING and Traf domains protein 1)(Malignant 62)(RING finger protein 83) [Source:UniProtKB/Swiss-Prot;Acc:Q9BUZ4] #mouseZ28p8 chromosome:11:77973121:77973275:-1 Same_strand|Exonic_non-coding|ENSMUST00000017530|ENSMUSG00000017386|protein_coding|Tnf receptor associated factor 4 Gene [Source:MGI (curated);Acc:Traf4-001] ========== block440715 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block440715: 0.001 #forester #identity: 0.00 block440715 TCGATGCCCACCTCTTCCCAG #rat_gr888520_libT4S1 21 8 block440715 TCGATGCCCACCTCTTCCCA #rat_gr888519_libT4S1 20 8 block440715 CTCGATGCCCACCTCTTCCCAG #rat_gr427558_libT4S1 22 4 block440715 TCGATGCCCACCTCTTCCC #rat_gr888518_libT4S1 19 3 block440715 CTCGATGCCCACCTCTTCCCA #rat_gr427557_libT4S2 21 2 block440715 TCGATGCCCACCTCTTCC #rat_gr888517_libT4S1 18 2 block440715 TCGATGCCCACCTCTTCCCAGG #rat_gr888521_libT4S1 22 1 block440715 TCGATGCCCACCTCTTCCCAG #rat_gr888520_libT4S2 21 1 block440715 TCGATGCCCACCTCTTCCCA #rat_gr888519_libT4S2 20 1 block440715 CTCGATGCCCACCTCTTCCCA #rat_gr427557_libT4S1 21 1 block440715 TCGATGCCCACCTCTTCCC #rat_gr888518_libT4S2 19 1 block440715 CTCGATGCCCACCTCTTCCC #rat_gr427556_libT4S1 20 1 block440715 CTCGATGCCCACCTCTTCCC #rat_gr427556_libT4S2 20 1 block440715 CTCGATGCCCACCTCTTCC #rat_gr427555_libT4S1 19 1 block440715 TCCTCGATGCCCACCTCTTC #rat_gr874528_libT4S1 20 1 block440715 ggccaagggagcatgctgggcctggggtaaggggatggcagaggagaaagctgatccacttcCTCGATGCCCACCTCTTCCCAGgccaagaatgccctggcc ****************************************************************************************************** block440715 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000024186 ENSRNOG00000016983 Myh7 block440715 ((((..(((.((((.((.(((((((((..(((((..((((((((((.............))))))..))))..)))))))))))))).)).))))))))))) 1.000 -53.62 # #block440715 chromosome:15:33078393:33078494:-1 Same_strand|Boundary_coding|ENSRNOT00000024186|ENSRNOG00000016983 ## ENSRNOG00000016983|protein_coding|Myh7|Myosin-7 (Myosin heavy chain 7) (Myosin heavy chain, cardiac muscle beta isoform) (MyHC-beta) (Myosin heavy chain slow isoform) (MyHC- slow). [Source:UniProtKB/Swiss-Prot;Acc:P02564] ========== block747712 [novel_cloningOK_randfoldOK] ========== #randfold block747712: 0.001 #forester #identity: 0.00 block747712 TCTGCCTGGTGTGAAGCCCT #rat_gr906508_libT1S2 20 3 block747712 TCTGCCTGGTGTGAAGCCCTG #rat_gr906509_libT3S1 21 2 block747712 TCTGCCTGGTGTGAAGCCCTG #rat_gr906509_libT4S2 21 2 block747712 TCTGCCTGGTGTGAAGCC #rat_gr906506_libT3S2 18 1 block747712 TCTGCCTGGTGTGAAGCCC #rat_gr906507_libT3S2 19 1 block747712 TCTGCCTGGTGTGAAGCCCTG #rat_gr906509_libT5S1 21 1 block747712 TCTGCCTGGTGTGAAGCCCTGC #rat_gr906510_libT3S1 22 1 block747712 TCTGCCTGGTGTGAAGCCCTGC #rat_gr906510_libT3S2 22 1 block747712 aggcacaaccaccaggagtgttcggccggcgTCTGCCTGGTGTGAAGCCCTGCtctaccgtctgcatggctcctcactgggcaggcgccgctgggcccgtagtggtcagct *************************************************************************************************************** block747712 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000019351 ENSRNOG00000013774 Lmnb1 block747712 .(((...(((((..((...((((((.(((((((((((..(((...((((.(((..........))).))))...)))..)))))))))))))))))))...)))))..))) 1.000 -60.20 # #block747712 chromosome:18:52499001:52499111:1 Same_strand|Intronic_coding|ENSRNOT00000019351|ENSRNOG00000013774 ## ENSRNOG00000013774|protein_coding|Lmnb1|Lamin-B1. [Source:UniProtKB/Swiss-Prot;Acc:P70615] ========== block913509 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block913509: 0.002 #forester #identity: 0.00 block913509 TCACCATTTCCACCTTCCCAGT #rat_gr813209_libT1S1 22 5 block913509 TCACCATTTCCACCTTCCCAG #rat_gr813208_libT1S1 21 3 block913509 TCACCATTTCCACCTTCCCAG #rat_gr813208_libT1S2 21 3 block913509 TCACCATTTCCACCTTCC #rat_gr813205_libT1S2 18 2 block913509 TCACCATTTCCACCTTCCCAGT #rat_gr813209_libT1S2 22 1 block913509 TCACCATTTCCACCTTCCCA #rat_gr813207_libT1S1 20 1 block913509 TCACCATTTCCACCTTCCCA #rat_gr813207_libT1S2 20 1 block913509 TCACCATTTCCACCTTCCC #rat_gr813206_libT1S2 19 1 block913509 tggggcttaggtgggcagagaacatgggagggagtgaagtgcatgcattctgagtaaggaaaacagaaagttgaccTCACCATTTCCACCTTCCCAGTgtcctaatctacctgggctttg ************************************************************************************************************************ block913509 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027119 ENSRNOG00000020009 Npas4 block913509 .((((((((((((((...((.(((((((((((...((((((............((.(((..(((.....)))..))).))))))))..)))))))).))).))..)))))))))))))). 0.400 -43.60 # #block913509 chromosome:1:207600547:207600666:-1 Same_strand|Boundary_coding|ENSRNOT00000027119|ENSRNOG00000020009 ## ENSRNOG00000020009|protein_coding|Npas4|Neuronal PAS domain-containing protein 4 (Neuronal PAS4) (HLH-PAS transcription factor NXF). [Source:UniProtKB/Swiss-Prot;Acc:Q8CJH6] ========== block978236 [novel_cloningOK_shortStem_mirtron_randfoldOK] ========== #randfold block978236: 0.001 #forester #identity: 0.00 block978236 CCCCCTCCTCCCTCCTGACAGT #rat_gr351094_libT1S1 22 3 block978236 CCCCCTCCTCCCTCCTGACA #rat_gr351092_libT1S1 20 2 block978236 CCCCCTCCTCCCTCCTGACAGT #rat_gr351094_libT5S1 22 2 block978236 CCCCCTCCTCCCTCCTGAC #rat_gr351091_libT2S2 19 1 block978236 CCCCCTCCTCCCTCCTGACAG #rat_gr351093_libT1S1 21 1 block978236 CCCCCTCCTCCCTCCTGACAG #rat_gr351093_libT5S1 21 1 block978236 CCCCCTCCTCCCTCCTGACAGT #rat_gr351094_libT1S2 22 1 block978236 ggtggctgtgaagatcaccccgaggagggggggggcaggaccctcgccgggggcaacatcctgtccccaaggcatgggtgactcctgacCCCCCTCCTCCCTCCTGACAGTaccc ******************************************************************************************************************* block978236 >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> #ENSRNOT00000028290 ENSRNOG00000020848 ADCK4_RAT block978236 >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>> #ENSRNOT00000057220 ENSRNOG00000020848 ADCK4_RAT block978236 (((.(((((..((........((((((((((((((((((((((..((((((((((......)))))))..)))..)))....))))).)))))))))))).)))).)))))))). 0.460 -65.60 # #block978236 chromosome:1:82319032:82319146:1 Same_strand|Boundary_coding|ENSRNOT00000057220|ENSRNOG00000020848 ## ENSRNOG00000020848|protein_coding|ADCK4_RAT|Uncharacterized aarF domain-containing protein kinase 4 (EC 2.7.11.-). [Source:UniProtKB/Swiss-Prot;Acc:Q6AY19] ========== block1030047 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block1030047: 0.009 #forester #identity: 0.00 block1030047 TTGGCCTCGGCTCTCCTCCCAG #rat_gr1143166_libT5S1 22 4 block1030047 TTGGCCTCGGCTCTCCTCCCAG #rat_gr1143166_libT5S2 22 4 block1030047 TTGGCCTCGGCTCTCCTC #rat_gr1143162_libT5S2 18 2 block1030047 TTGGCCTCGGCTCTCCTCCCA #rat_gr1143165_libT5S1 21 2 block1030047 CTTGGCCTCGGCTCTCCTC #rat_gr466263_libT5S1 19 1 block1030047 CTTGGCCTCGGCTCTCCTCCC #rat_gr466264_libT5S2 21 1 block1030047 CTTGGCCTCGGCTCTCCTCCCA #rat_gr466265_libT5S1 22 1 block1030047 CTTGGCCTCGGCTCTCCTCCCA #rat_gr466265_libT5S2 22 1 block1030047 CTTGGCCTCGGCTCTCCTCCCAG #rat_gr466266_libT5S2 23 1 block1030047 TTGGCCTCGGCTCTCCTC #rat_gr1143162_libT2S2 18 1 block1030047 TTGGCCTCGGCTCTCCTCC #rat_gr1143163_libT5S1 19 1 block1030047 TTGGCCTCGGCTCTCCTCCC #rat_gr1143164_libT5S1 20 1 block1030047 TTGGCCTCGGCTCTCCTCCC #rat_gr1143164_libT5S2 20 1 block1030047 TTGGCCTCGGCTCTCCTCCCA #rat_gr1143165_libT5S2 21 1 block1030047 TTGGCCTCGGCTCTCCTCCCAG #rat_gr1143166_libT3S2 22 1 block1030047 TGGCCTCGGCTCTCCTCCCA #rat_gr1012327_libT2S2 20 1 block1030047 GGCCTCGGCTCTCCTCCCAG #rat_gr596869_libT5S2 20 1 block1030047 ctccttggcaagagtagggttaccctcctgggggagcgtgggggcagaggtcacagcctcagcaaccTTGGCCTCGGCTCTCCTCCCAGgaccacgactttgagccgctgagg ***************************************************************************************************************** block1030047 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000024112 ENSRNOG00000017901 Acy3 block1030047 (((..((((.(((((..((......(((((((((((.((.(((((.(((((....((....)).))))).))))).)).)))).)))))))))...)))))..))))..))). 0.690 -54.30 # #block1030047 chromosome:1:206572373:206572485:1 Same_strand|Intronic_coding|ENSRNOT00000024112|ENSRNOG00000017901 ## ENSRNOG00000017901|protein_coding|Acy3|aspartoacylase-3 [Source:RefSeq_peptide;Acc:NP_001009603] ========== block1137124 [novel_cloningOK_randfoldOK] ========== #randfold block1137124: 0.001 #forester #identity: 0.00 block1137124 TCTGGCCCATCTCTTTAGACCT #rat_gr907679_libT3S1 22 10 block1137124 TCTGGCCCATCTCTTTAGACCT #rat_gr907679_libT5S1 22 3 block1137124 TCTGGCCCATCTCTTTAGACCT #rat_gr907679_libT4S2 22 2 block1137124 TCTGGCCCATCTCTTTAGA #rat_gr907677_libT1S1 19 2 block1137124 TCTGGCCCATCTCTTTAGAC #rat_gr907678_libT3S1 20 1 block1137124 TCTGGCCCATCTCTTTAGA #rat_gr907677_libT5S2 19 1 block1137124 acaccaagtgctcataactTCTGGCCCATCTCTTTAGACCTaattgtttatattttgaaaggtgagggggctggagagatggctcagaggttaggagcactatgtg ********************************************************************************************************** block1137124 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000025506 ENSRNOG00000018746 NP_001099874.1 block1137124 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000025445 ENSRNOG00000018746 NP_001099874.1 block1137124 .(((..(((((((.(((((((((..((((((((((((.(((.((..((((.....))))..)).)))...))))))))))))..))))))))).)))))))..))) 1.000 -52.70 # #block1137124 chromosome:2:31616024:31616129:-1 Same_strand|Intronic_coding|ENSRNOT00000025506|ENSRNOG00000018746 ## ENSRNOG00000018746|protein_coding|NP_001099874.1|solute carrier family 30 (zinc transporter), member 5 [Source:RefSeq_peptide;Acc:NP_001099874] ========== block1311102 [novel_cloningHIGH_mirtron_randfoldOK] ========== #randfold block1311102: 0.002 #forester #identity: 0.00 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT1S1 21 17 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT1S2 21 14 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT2S1 21 8 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT5S1 22 8 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT3S1 21 7 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT5S1 21 7 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT1S1 19 6 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT5S1 19 5 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT2S2 21 5 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT1S1 22 5 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT1S1 18 4 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT1S1 20 4 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT1S2 20 4 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT4S2 20 4 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT4S2 21 4 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT2S1 22 4 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT3S2 22 4 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT1S2 18 3 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT3S1 19 3 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT4S2 19 3 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT2S2 20 3 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT4S1 21 3 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT5S2 21 3 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT4S2 22 3 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT5S2 22 3 block1311102 CCCTCCCCCTCACTGCACA #rat_gr360019_libT3S2 19 3 block1311102 CTCCCTCCCCCTCACTGCACAGA #rat_gr423985_libT5S2 23 2 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT2S1 18 2 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT1S2 19 2 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT2S2 19 2 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT3S1 20 2 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT3S2 20 2 block1311102 CTCCCTCCCCCTCACTGC #rat_gr423983_libT4S2 18 1 block1311102 CTCCCTCCCCCTCACTGC #rat_gr423983_libT5S1 18 1 block1311102 CTCCCTCCCCCTCACTGCAC #rat_gr423984_libT1S2 20 1 block1311102 CTCCCTCCCCCTCACTGCACAGA #rat_gr423985_libT5S1 23 1 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT2S2 18 1 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT4S2 18 1 block1311102 TCCCTCCCCCTCACTGCA #rat_gr854979_libT5S2 18 1 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT2S1 19 1 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT3S2 19 1 block1311102 TCCCTCCCCCTCACTGCAC #rat_gr854980_libT5S2 19 1 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT4S1 20 1 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT5S1 20 1 block1311102 TCCCTCCCCCTCACTGCACA #rat_gr854981_libT5S2 20 1 block1311102 TCCCTCCCCCTCACTGCACAG #rat_gr854982_libT3S2 21 1 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT1S2 22 1 block1311102 TCCCTCCCCCTCACTGCACAGA #rat_gr854983_libT3S1 22 1 block1311102 TCCCTCCCCCTCACTGCACAGAG #rat_gr854984_libT1S1 23 1 block1311102 TCCCTCCCCCTCACTGCACAGAG #rat_gr854984_libT1S2 23 1 block1311102 TCCCTCCCCCTCACTGCACAGAG #rat_gr854984_libT4S2 23 1 block1311102 gctcaggactgcccagtgtgcagtggtgtgaggagggggcgtatcctaggcatcacactacctcTCCCTCCCCCTCACTGCACAGAgttgggctggtcacagcc ******************************************************************************************************** block1311102 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027793 ENSRNOG00000020500 LOC365842 block1311102 (((...((((((((((((((((((((.....((((((((.......(((........)))...))))))))...))))))))))...)))))).))))..))). 1.000 -46.00 # #block1311102 chromosome:2:181255559:181255662:1 Same_strand|Boundary_coding|ENSRNOT00000027793|ENSRNOG00000020500 ## ENSRNOG00000020500|protein_coding|LOC365842|CDC-like kinase 2 [Source:RefSeq_peptide;Acc:NP_001014276] ========== block1598968 [novel_cloningOK_shortStem_mirtron_randfoldOK] ========== #randfold block1598968: 0.002 #forester #identity: 0.00 block1598968 TCATTCCACCTTCCCTCCCAC #rat_gr824901_libT2S2 21 4 block1598968 TCATTCCACCTTCCCTCCCA #rat_gr824900_libT2S2 20 4 block1598968 TCATTCCACCTTCCCTCCCACAG #rat_gr824903_libT3S1 23 3 block1598968 TCATTCCACCTTCCCTCCCACA #rat_gr824902_libT1S2 22 2 block1598968 TCATTCCACCTTCCCTCCCAC #rat_gr824901_libT1S1 21 2 block1598968 TCATTCCACCTTCCCTCCCACAG #rat_gr824903_libT1S2 23 1 block1598968 TCATTCCACCTTCCCTCCCACAG #rat_gr824903_libT2S1 23 1 block1598968 TCATTCCACCTTCCCTCCCACAG #rat_gr824903_libT4S2 23 1 block1598968 TCATTCCACCTTCCCTCCCACAG #rat_gr824903_libT5S1 23 1 block1598968 CATTCCACCTTCCCTCCCACA #rat_gr315666_libT3S2 21 1 block1598968 TCATTCCACCTTCCCTCCCACA #rat_gr824902_libT3S1 22 1 block1598968 CTCATTCCACCTTCCCTCCCACA #rat_gr420530_libT1S1 23 1 block1598968 TCTCATTCCACCTTCCCTCCCACA #rat_gr896741_libT5S2 24 1 block1598968 TCATTCCACCTTCCCTCCCAC #rat_gr824901_libT3S1 21 1 block1598968 TCATTCCACCTTCCCTCCCAC #rat_gr824901_libT4S2 21 1 block1598968 CTCATTCCACCTTCCCTCCCAC #rat_gr420529_libT5S1 22 1 block1598968 TCTCATTCCACCTTCCCTCC #rat_gr896740_libT4S1 20 1 block1598968 accaatgggaggagggctgggaggaaaggagagagttctggaagcatcctcTCATTCCACCTTCCCTCCCACAGgtg ***************************************************************************** block1598968 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>> #ENSRNOT00000026184 ENSRNOG00000019264 Ltbr block1598968 (((..(((((((((((.(((((.((.((((....(((.....))).)))).)).))))))))))).)))))..))). 1.000 -33.80 # #block1598968 chromosome:4:161432738:161432814:-1 Same_strand|Intronic_coding|ENSRNOT00000026184|ENSRNOG00000019264 ## ENSRNOG00000019264|protein_coding|Ltbr|lymphotoxin B receptor [Source:RefSeq_peptide;Acc:NP_001008316] ========== block1791104 [novel_cloningHIGH_mirtron_randfoldOK] ========== #randfold block1791104: 0.002 #forester #identity: 0.00 block1791104 CCTGACTTCTCTCTTCATGCAG #rat_gr377717_libT1S1 22 13 block1791104 CCTGACTTCTCTCTTCATGCAG #rat_gr377717_libT1S2 22 7 block1791104 CTGACTTCTCTCTTCATGCAGT #rat_gr438027_libT1S1 22 5 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT1S1 21 4 block1791104 ACCTGACTTCTCTCTTCATGCAG #rat_gr106846_libT1S1 23 4 block1791104 CCTGACTTCTCTCTTCATGCA #rat_gr377716_libT1S1 21 4 block1791104 CCTGACTTCTCTCTTCATGCAG #rat_gr377717_libT5S2 22 3 block1791104 ACCTGACTTCTCTCTTCATGCA #rat_gr106845_libT1S1 22 3 block1791104 ACCTGACTTCTCTCTTCA #rat_gr106841_libT1S2 18 3 block1791104 CCTGACTTCTCTCTTCATGCAG #rat_gr377717_libT4S2 22 2 block1791104 CCTGACTTCTCTCTTCATGCAG #rat_gr377717_libT5S1 22 2 block1791104 ACCTGACTTCTCTCTTCATGCAG #rat_gr106846_libT4S2 23 2 block1791104 CTGACTTCTCTCTTCATGCA #rat_gr438025_libT1S1 20 2 block1791104 CCTGACTTCTCTCTTCATGCA #rat_gr377716_libT4S1 21 2 block1791104 CCTGACTTCTCTCTTCATGCA #rat_gr377716_libT5S2 21 2 block1791104 ACCTGACTTCTCTCTTCATGCA #rat_gr106845_libT1S2 22 2 block1791104 CCTGACTTCTCTCTTCATGC #rat_gr377715_libT1S2 20 2 block1791104 CCTGACTTCTCTCTTCATG #rat_gr377714_libT1S2 19 2 block1791104 CCTGACTTCTCTCTTCATG #rat_gr377714_libT4S2 19 2 block1791104 CTGACTTCTCTCTTCATGCAGT #rat_gr438027_libT4S2 22 1 block1791104 CCTGACTTCTCTCTTCATGCAGT #rat_gr377718_libT1S1 23 1 block1791104 CCTGACTTCTCTCTTCATGCAGT #rat_gr377718_libT4S2 23 1 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT1S2 21 1 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT3S1 21 1 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT4S1 21 1 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT4S2 21 1 block1791104 CTGACTTCTCTCTTCATGCAG #rat_gr438026_libT5S2 21 1 block1791104 ACCTGACTTCTCTCTTCATGCAG #rat_gr106846_libT3S1 23 1 block1791104 ACCTGACTTCTCTCTTCATGCAG #rat_gr106846_libT5S1 23 1 block1791104 CTGACTTCTCTCTTCATGCA #rat_gr438025_libT5S1 20 1 block1791104 CCTGACTTCTCTCTTCATGCA #rat_gr377716_libT1S2 21 1 block1791104 ACCTGACTTCTCTCTTCATGCA #rat_gr106845_libT4S2 22 1 block1791104 CCTGACTTCTCTCTTCATGC #rat_gr377715_libT4S1 20 1 block1791104 CCTGACTTCTCTCTTCATGC #rat_gr377715_libT5S1 20 1 block1791104 ACCTGACTTCTCTCTTCATGC #rat_gr106844_libT1S1 21 1 block1791104 ACCTGACTTCTCTCTTCATGC #rat_gr106844_libT1S2 21 1 block1791104 ACCTGACTTCTCTCTTCATGC #rat_gr106844_libT2S2 21 1 block1791104 AACCTGACTTCTCTCTTCATGC #rat_gr34752_libT1S1 22 1 block1791104 CTGACTTCTCTCTTCATG #rat_gr438024_libT2S1 18 1 block1791104 CTGACTTCTCTCTTCATG #rat_gr438024_libT4S1 18 1 block1791104 CCTGACTTCTCTCTTCATG #rat_gr377714_libT1S1 19 1 block1791104 CCTGACTTCTCTCTTCATG #rat_gr377714_libT3S1 19 1 block1791104 CCTGACTTCTCTCTTCATG #rat_gr377714_libT4S1 19 1 block1791104 ACCTGACTTCTCTCTTCATG #rat_gr106843_libT4S1 20 1 block1791104 CCTGACTTCTCTCTTCAT #rat_gr377713_libT1S1 18 1 block1791104 CCTGACTTCTCTCTTCAT #rat_gr377713_libT3S2 18 1 block1791104 CCTGACTTCTCTCTTCAT #rat_gr377713_libT4S1 18 1 block1791104 CCTGACTTCTCTCTTCAT #rat_gr377713_libT4S2 18 1 block1791104 CCTGACTTCTCTCTTCAT #rat_gr377713_libT5S2 18 1 block1791104 ACCTGACTTCTCTCTTCAT #rat_gr106842_libT1S1 19 1 block1791104 ACCTGACTTCTCTCTTCAT #rat_gr106842_libT5S1 19 1 block1791104 ACCTGACTTCTCTCTTCA #rat_gr106841_libT3S1 18 1 block1791104 ACCTGACTTCTCTCTTCA #rat_gr106841_libT5S2 18 1 block1791104 AACCTGACTTCTCTCTTCA #rat_gr34751_libT4S2 19 1 block1791104 cactaatggtgagcatgaagagttcagatcacgttcatgaagtgctgatgaACCTGACTTCTCTCTTCATGCAGTtgtctatcttggtgc ****************************************************************************************** block1791104 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000017740 ENSRNOG00000013255 Dnajc8 block1791104 ((((((.(((((((((((((((...((.(((.((((((.........)))))).)))))...)))))))))).....)).))))))))). 0.980 -29.60 # #block1791104 chromosome:5:152608900:152608989:-1 Same_strand|Boundary_coding|ENSRNOT00000017740|ENSRNOG00000013255 ## ENSRNOG00000013255|protein_coding|Dnajc8|DnaJ (Hsp40) homolog, subfamily C, member 8 Gene [Source:MGI (curated);Acc:Dnajc8-006] ========== block1837880 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block1837880: 0.001 #forester #identity: 0.00 block1837880 ATACCATTTACCTTTCTCCCA #rat_gr208391_libT1S1 21 3 block1837880 ATACCATTTACCTTTCTCCCA #rat_gr208391_libT5S1 21 3 block1837880 ATACCATTTACCTTTCTCCCAG #rat_gr208392_libT3S1 22 3 block1837880 ATACCATTTACCTTTCTCCCAG #rat_gr208392_libT3S2 22 2 block1837880 ATACCATTTACCTTTCTC #rat_gr208389_libT5S2 18 1 block1837880 ATACCATTTACCTTTCTCCC #rat_gr208390_libT5S1 20 1 block1837880 ATACCATTTACCTTTCTCCCA #rat_gr208391_libT2S2 21 1 block1837880 ATACCATTTACCTTTCTCCCAG #rat_gr208392_libT4S2 22 1 block1837880 ACCATTTACCTTTCTCCCAG #rat_gr93673_libT1S1 20 1 block1837880 gtcaggtgagcgattagtggtggtttctgggagtggagtagatgggaggctgcaggagtaaccATACCATTTACCTTTCTCCCAGaacaacagctggtgcagctgacccaaca ***************************************************************************************************************** block1837880 >>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000023411 ENSRNOG00000017253 NP_001101427.1 block1837880 ((..(((.(((.((((((.((...(((((((((.((.((((((((..((.(((....))).))...))))))))))..)))))))))..)).))))))...))).)))..)). 1.000 -48.00 # #block1837880 chromosome:5:59974635:59974747:1 Same_strand|Intronic_coding|ENSRNOT00000023411|ENSRNOG00000017253 ## ENSRNOG00000017253|protein_coding|NP_001101427.1| ========== block1961412 [novel_cloningOK_randfoldOK] ========== #randfold block1961412: 0.002 #forester #identity: 0.00 block1961412 AGAAGCCTAAGTCTGCTCTGAC #rat_gr134389_libT5S1 22 4 block1961412 AGAAGCCTAAGTCTGCTCTGACT #rat_gr134390_libT5S1 23 3 block1961412 AGAAGCCTAAGTCTGCTCTGAC #rat_gr134389_libT5S2 22 2 block1961412 GAGAAGCCTAAGTCTGCTCTGAC #rat_gr503419_libT5S2 23 2 block1961412 GAAGCCTAAGTCTGCTCTGACT #rat_gr486450_libT3S1 22 1 block1961412 AGAAGCCTAAGTCTGCTCTGACT #rat_gr134390_libT3S2 23 1 block1961412 AGAAGCCTAAGTCTGCTCTGAC #rat_gr134389_libT3S1 22 1 block1961412 GAGAAGCCTAAGTCTGCTCTGAC #rat_gr503419_libT3S1 23 1 block1961412 GAGAAGCCTAAGTCTGCTCTGAC #rat_gr503419_libT5S1 23 1 block1961412 AGAAGCCTAAGTCTGCTCTGA #rat_gr134388_libT3S2 21 1 block1961412 AGAAGCCTAAGTCTGCTCT #rat_gr134387_libT5S2 19 1 block1961412 GAGAAGCCTAAGTCTGCTC #rat_gr503418_libT5S1 19 1 block1961412 GAGAAGCCTAAGTCTGCTC #rat_gr503418_libT5S2 19 1 block1961412 gctgaaccctccttcccagcctagagcaggcttaactctttcctccctgcctagGAGAAGCCTAAGTCTGCTCTGACTaaagaggccagc ****************************************************************************************** block1961412 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000005990 ENSRNOG00000004309 Actn1_v3 block1961412 ((((...((((.((...((..(((((((((((((.((.((((((........))))))))..))))))))))))).)))).)))).)))) 0.990 -32.20 # #block1961412 chromosome:6:103141587:103141676:-1 Same_strand|Boundary_non-coding|ENSRNOT00000040528|ENSRNOG00000004309 ## Same_strand|Intronic_non-coding|ENSRNOT00000005990|ENSRNOG00000004309 ## ENSRNOG00000004309|protein_coding|Actn1_v3|Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform) (Non-muscle alpha-actinin-1) (F-actin cross-linking protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9Z1P2] ========== block2150313 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block2150313: 0.010 #forester #identity: 0.00 block2150313 AGCTGATCACTCTCCCTACAG #rat_gr165570_libT5S1 21 7 block2150313 AGCTGATCACTCTCCCTACAG #rat_gr165570_libT5S2 21 5 block2150313 AGCTGATCACTCTCCCTACAG #rat_gr165570_libT2S1 21 3 block2150313 AGCTGATCACTCTCCCTAC #rat_gr165568_libT5S1 19 3 block2150313 AGCTGATCACTCTCCCTACA #rat_gr165569_libT5S2 20 2 block2150313 AGCTGATCACTCTCCCTAC #rat_gr165568_libT5S2 19 2 block2150313 AGCTGATCACTCTCCCTACAGG #rat_gr165571_libT2S2 22 1 block2150313 CTGATCACTCTCCCTACAG #rat_gr440145_libT3S1 19 1 block2150313 AGCTGATCACTCTCCCTACAG #rat_gr165570_libT1S1 21 1 block2150313 AGCTGATCACTCTCCCTACAG #rat_gr165570_libT4S1 21 1 block2150313 AGCTGATCACTCTCCCTACA #rat_gr165569_libT1S1 20 1 block2150313 AGCTGATCACTCTCCCTACA #rat_gr165569_libT2S2 20 1 block2150313 AGCTGATCACTCTCCCTACA #rat_gr165569_libT5S1 20 1 block2150313 AGCTGATCACTCTCCCTAC #rat_gr165568_libT2S1 19 1 block2150313 AGCTGATCACTCTCCCTAC #rat_gr165568_libT3S1 19 1 block2150313 AGCTGATCACTCTCCCTA #rat_gr165567_libT5S1 18 1 block2150313 AGCTGATCACTCTCCCTA #rat_gr165567_libT5S2 18 1 block2150313 ccctggtgtgagtgccctgcgctgaatgtgtagggagagtggggtggcccaggcggtccgctgtggAGCTGATCACTCTCCCTACAGgtgccacttctgcaggtgtcgggg *************************************************************************************************************** block2150313 >>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000010637 ENSRNOG00000007939 Naprt1 block2150313 (((((........((((((((.((.((.((((((((((((((..(((((((((((...)))).))).)))).)))))))))))))).))..))....)))))).))))))) 0.750 -53.30 # #block2150313 chromosome:7:113868033:113868143:-1 Same_strand|Boundary_coding|ENSRNOT00000010637|ENSRNOG00000007939 ## ENSRNOG00000007939|protein_coding|Naprt1|Nicotinate phosphoribosyltransferase (EC 2.4.2.11) (NAPRTase) (Nicotinate phosphoribosyltransferase domain-containing protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q6XQN1] ========== block2150508 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block2150508: 0.009 randfold mouseZ8p69_block2150508: 0.048 #forester mouseZ8p69_block2150508: 0.496574 #identity: 88.54 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT1S2 21 6 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT4S1 21 4 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT5S1 21 4 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT1S1 21 3 block2150508 TCTGACTCTTGCCTCCCACAGA #rat_gr904894_libT1S1 22 2 block2150508 TCTGACTCTTGCCTCCCAC #rat_gr904891_libT3S1 19 2 block2150508 TCTGACTCTTGCCTCCCAC #rat_gr904891_libT3S2 19 2 block2150508 TCTGACTCTTGCCTCCCA #rat_gr904890_libT1S1 18 2 block2150508 CTGACTCTTGCCTCCCACAGA #rat_gr437820_libT5S1 21 1 block2150508 TCTGACTCTTGCCTCCCACAGA #rat_gr904894_libT5S1 22 1 block2150508 CTGACTCTTGCCTCCCACAG #rat_gr437819_libT1S1 20 1 block2150508 CTGACTCTTGCCTCCCACAG #rat_gr437819_libT1S2 20 1 block2150508 CTGACTCTTGCCTCCCACAG #rat_gr437819_libT4S2 20 1 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT2S2 21 1 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT3S1 21 1 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT3S2 21 1 block2150508 TCTGACTCTTGCCTCCCACAG #rat_gr904893_libT5S2 21 1 block2150508 TCTGACTCTTGCCTCCCACA #rat_gr904892_libT1S1 20 1 block2150508 TCTGACTCTTGCCTCCCACA #rat_gr904892_libT1S2 20 1 block2150508 TCTGACTCTTGCCTCCCACA #rat_gr904892_libT4S2 20 1 block2150508 TCTGACTCTTGCCTCCCAC #rat_gr904891_libT4S1 19 1 block2150508 TCTGACTCTTGCCTCCCAC #rat_gr904891_libT5S2 19 1 block2150508 TCTCTGACTCTTGCCTCCCAC #rat_gr902638_libT3S2 21 1 block2150508 TCTGACTCTTGCCTCCCA #rat_gr904890_libT1S2 18 1 block2150508 TCTGACTCTTGCCTCCCA #rat_gr904890_libT2S1 18 1 block2150508 TCTGACTCTTGCCTCCCA #rat_gr904890_libT4S1 18 1 block2150508 TCTGACTCTTGCCTCCCA #rat_gr904890_libT5S1 18 1 block2150508 GGTTGCTCTTGGCTCAGCCTTGAATGGTGGGTGGGTGAAGTAGAGAGACCAGCATGGGTCTCTGACTCTTGCCTCCCACAGAAGACCCTGGACAGCAGAGCAGTCC mouseZ8p69 ---TGCTGTTGGCTGGGCCCTGAATGGTGGGC-GGTGAAACAGAGAGCTTAGCATGGGTCTCTGACTC-TGCCTCCCACAGAAGACGCTGGACAGCAGAGC----- **** ****** *** *********** ****** ****** ****************** ***************** ************** block2150508 >>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000045280 ENSRNOG00000032574 RGD1565055_predicted block2150508 >>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000052080 ENSRNOG00000032574 RGD1565055_predicted block2150508 >>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000047338 ENSRNOG00000032574 RGD1565055_predicted block2150508 (((((((((..((((((..((.....(((((.(((((((((..(((((((......))))))).))).)))))))))))....))..)))...)))))))))).)) 0.960 -42.80 # mouseZ8p69 ((((((((((......(((..(((..((( ((.....((((((.((......)).))))))...) ))))..)))))).....)))).)))))).... 0.802 -36.90 # #block2150508 chromosome:7:114095545:114095650:-1 Same_strand|Boundary_coding|ENSRNOT00000052080|ENSRNOG00000032574 ## ENSRNOG00000032574|protein_coding|RGD1565055_predicted| #mouseZ8p69 chromosome:15:75895238:75895333:-1 Same_strand|Boundary_coding|ENSMUST00000063747|ENSMUSG00000022568|protein_coding|scribbled homolog (Drosophila) Gene [Source:MGI (curated);Acc:Scrib-003] ========== block2309589 [novel_cloningOK_randfoldOK] ========== #randfold block2309589: 0.001 randfold human59p73_block2309589: 0.045 #forester human59p73_block2309589: 0.419204 #identity: 70.18 block2309589 TCAGACAGCTGAGTCACTCTG #rat_gr816443_libT3S2 21 4 block2309589 TCAGACAGCTGAGTCACTCTGC #rat_gr816444_libT3S2 22 2 block2309589 TCAGACAGCTGAGTCACTCTG #rat_gr816443_libT2S1 21 2 block2309589 TCAGACAGCTGAGTCACTCTG #rat_gr816443_libT3S1 21 2 block2309589 TCAGACAGCTGAGTCACTCTG #rat_gr816443_libT5S2 21 2 block2309589 TCAGACAGCTGAGTCACTC #rat_gr816441_libT2S2 19 2 block2309589 TCAGACAGCTGAGTCACTCTGC #rat_gr816444_libT5S2 22 1 block2309589 TCAGACAGCTGAGTCACTCTG #rat_gr816443_libT4S2 21 1 block2309589 TCAGACAGCTGAGTCACTCT #rat_gr816442_libT1S1 20 1 block2309589 TCAGACAGCTGAGTCACTCT #rat_gr816442_libT3S1 20 1 block2309589 TCAGACAGCTGAGTCACTCT #rat_gr816442_libT5S2 20 1 block2309589 TGTCAGACAGCTGAGTCACTCT #rat_gr1078026_libT4S2 22 1 block2309589 TCAGACAGCTGAGTCACTC #rat_gr816441_libT3S1 19 1 block2309589 TCAGACAGCTGAGTCACT #rat_gr816440_libT3S1 18 1 block2309589 TCAGACAGCTGAGTCACT #rat_gr816440_libT3S2 18 1 block2309589 GGTGACAGTTTGCAATGTGACTCAGCTATCTGAACAGTCACCCCAATGTCAGACAGCTGAGTCACTCTGCAAATTGTCACCC human59p73 ATTG---------AATGGGA-GCAGCCAACTGGC---TCATCCACTTGTCAGACAGCTGAGTCATTTGAT------------ ** **** ** **** * *** *** ** ****************** * block2309589 ((((((((((((((..(((((((((((.((((.(((..........))))))).)))))))))))..)))))))))))))). 1.000 -51.00 # human59p73 ((.. (((((.. .((((...((((( ..........)))))...))))..)))))..)) 0.721 -16.50 # #block2309589 chromosome:8:55466026:55466107:-1 intergenic #human59p73 chromosome:2:141965691:141965812:1 Opposite_strand|Intronic_coding|ENST00000389484|ENSG00000168702|protein_coding|Low-density lipoprotein receptor-related protein 1B Precursor (Low-density lipoprotein receptor-related protein-deleted in tumor)(LRP-DIT) [Source:UniProtKB/Swiss-Prot;Acc:Q9NZR2] ========== block2352273 [novel_cloningOK_randfoldOK] ========== #randfold block2352273: 0.005 randfold mouseZ5p74_block2352273: 0.031 #forester mouseZ5p74_block2352273: 0.683977 #identity: 83.05 block2352273 ATAACCCTTACCACAGAACCTGTC #rat_gr205524_libT1S1 24 2 block2352273 ATAACCCTTACCACAGAACCTG #rat_gr205523_libT1S2 22 2 block2352273 ATAACCCTTACCACAGAACCTG #rat_gr205523_libT4S1 22 2 block2352273 ATAACCCTTACCACAGAACCT #rat_gr205522_libT4S2 21 2 block2352273 ATAACCCTTACCACAGAACCTGTC #rat_gr205524_libT3S2 24 1 block2352273 ATAACCCTTACCACAGAACCT #rat_gr205522_libT5S2 21 1 block2352273 ATAACCCTTACCACAGAAC #rat_gr205521_libT3S1 19 1 block2352273 ATAACCCTTACCACAGAAC #rat_gr205521_libT5S2 19 1 block2352273 TTCCTCTGAAGCTTTTGTGCCTGGCAGACATAACCCTTACCACAGAACCTGTCAGCAGGA-TGTCACAGGACCTGGGTGAATGGGTTGTGCCTGCCTGTCCTCACCACTGCCAGGGAAG mouseZ5p74 -----------------------------ATAACCCTTGCCACAGAAACTGTCAACAGGGCTGTACCAGTACCTGGGCGAGTGGGCTGT------------------------------ ********* ******** ****** **** *** *** ******* ** **** *** block2352273 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000056453 ENSRNOG00000011491 NP_001102246.1 block2352273 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000015344 ENSRNOG00000011491 NP_001102246.1 block2352273 ((((.(((..((....(((...(((((.(((((((((((((.(((..(((((..((.... .)).)))))..))))))))..)))))))).)))))......)))....))))))))). 0.780 -47.10 # mouseZ5p74 ....((((((((.(((..((((...(((....)))..))))..))))))))).))..... 0.804 -21.30 # #block2352273 chromosome:8:109223934:109224051:-1 Same_strand|Boundary_non-coding|ENSRNOT00000015534|ENSRNOG00000011491 ## Same_strand|Intronic_coding|ENSRNOT00000015344|ENSRNOG00000011491 ## Same_strand|Intronic_non-coding|ENSRNOT00000056453|ENSRNOG00000011491 ## ENSRNOG00000011491|protein_coding|NP_001102246.1|DnaJ (Hsp40) homolog, subfamily C, member 13 [Source:RefSeq_peptide;Acc:NP_001102246] #mouseZ5p74 chromosome:9:104066692:104066849:-1 Same_strand|Intronic_coding|ENSMUST00000035170|ENSMUSG00000032560|protein_coding|DnaJ (Hsp40) homolog, subfamily C, member 13 Gene [Source:MGI Symbol;Acc:MGI:2676368] ========== block2664282 [novel_cloningOK_mirtron_randfoldOK] ========== #randfold block2664282: 0.001 randfold mouseZ5p79_block2664282: 0.001 #forester mouseZ5p79_block2664282: 0.883573 #identity: 96.92 block2664282 ACTACCCACTTCCATCTCCACAG #rat_gr115420_libT3S2 23 3 block2664282 ACTACCCACTTCCATCTCCACAG #rat_gr115420_libT4S2 23 2 block2664282 ACTACCCACTTCCATCTCCACA #rat_gr115419_libT4S2 22 2 block2664282 ACTACCCACTTCCATCTCCACA #rat_gr115419_libT1S1 22 1 block2664282 ACTACCCACTTCCATCTCCACA #rat_gr115419_libT2S2 22 1 block2664282 ACTACCCACTTCCATCTCCACA #rat_gr115419_libT5S2 22 1 block2664282 ACTACCCACTTCCATCTCCAC #rat_gr115418_libT1S1 21 1 block2664282 ACTACCCACTTCCATCTCCAC #rat_gr115418_libT3S2 21 1 block2664282 ACTACCCACTTCCATCTCCA #rat_gr115417_libT3S1 20 1 block2664282 ACTACCCACTTCCATCTC #rat_gr115416_libT1S2 18 1 block2664282 GAGTGAGCCTTATATCTTAGAGAGTTGGGGAGGTGGGAGGGAGAGCTGAAATAGTCTCCAGATAATTCACTACCCACTTCCATCTCCACAGCTACCTCCACGCCAAGAACATCATTCA mouseZ5p79 -------------------------TGGGGAGGTGGGAGGGATAGCTGAAATAGTCTCCAGACAATTCACTACCCACTTCCATCTCCACA---------------------------- ***************** ******************* *************************** block2664282 >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000039911 ENSRNOG00000010838 Araf block2664282 >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000049528 ENSRNOG00000010838 Araf block2664282 >>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000015559 ENSRNOG00000010838 Araf block2664282 ((((((.............((((((((.(((((((((((((..((.((((...(((....)))..))))))..)).))))))))))).)))))..))).............)))))). 0.870 -40.67 # mouseZ5p79 ...(((((((((((((.(((.((((...(((....)))..))))))).)).)))))))))))... 1.000 -29.30 # #block2664282 chromosome:X:12559544:12559661:-1 Same_strand|Intronic_coding|ENSRNOT00000015559|ENSRNOG00000010838 ## ENSRNOG00000010838|protein_coding|Araf|A-Raf proto-oncogene serine/threonine-protein kinase (EC 2.7.11.1). [Source:UniProtKB/Swiss-Prot;Acc:P14056] #mouseZ5p79 chromosome:X:20434893:20435050:1 Same_strand|Boundary_non-coding|ENSMUST00000120356|ENSMUSG00000001127|protein_coding|v-raf murine sarcoma 3611 viral oncogene homolog Gene [Source:MGI (curated);Acc:Araf-001] ## Same_strand|Boundary_coding|ENSMUST00000001155|ENSMUSG00000001127|protein_coding|v-raf murine sarcoma 3611 viral oncogene homolog Gene [Source:MGI (curated);Acc:Araf-001] ========== block2704919 [novel_cloningOK_randfoldOK] ========== #randfold block2704919: 0.007 randfold human284p79_block2704919: 0.040 #forester human284p79_block2704919: 0.323538 #identity: 67.65 block2704919 TGGGGGCAGGCCGGATCTAGTG #rat_gr1040533_libT5S1 22 3 block2704919 TGGGGGCAGGCCGGATCTAG #rat_gr1040531_libT1S1 20 2 block2704919 TGGGGGCAGGCCGGATCTAG #rat_gr1040531_libT5S2 20 2 block2704919 TGGGGGCAGGCCGGATCTA #rat_gr1040530_libT1S2 19 2 block2704919 TGGGGGCAGGCCGGATCTAGTG #rat_gr1040533_libT1S2 22 1 block2704919 TGGGGGCAGGCCGGATCTAGTG #rat_gr1040533_libT3S1 22 1 block2704919 TGGGGGCAGGCCGGATCTAGT #rat_gr1040532_libT5S1 21 1 block2704919 TGGGGGCAGGCCGGATCTAG #rat_gr1040531_libT3S1 20 1 block2704919 TGGGGGCAGGCCGGATCTAG #rat_gr1040531_libT3S2 20 1 block2704919 TGGGGGCAGGCCGGATCTAG #rat_gr1040531_libT5S1 20 1 block2704919 TGGGGGCAGGCCGGATCT #rat_gr1040529_libT1S1 18 1 block2704919 TGGGGGCAGGCCGGATCT #rat_gr1040529_libT1S2 18 1 block2704919 TGGGGGCAGGCCGGATCT #rat_gr1040529_libT5S2 18 1 block2704919 GGAAGGTGGGTGAGGAGGGCTCCTCAGTCCCTGGGGGCAGGCCGGATCTAGTGGTGACGAGAGAGC-CCTAGATGTGGTCCCTGCGCCCATAGGACAGGTGAGCGCCAGCCCAGACTGGCC human284p79 -------------------------------AGGGGGCAGGCCGGAGTTGAGGATGATGTTTGATCACCGCAATGTCAGCCGTGAGCC------------GTGCTCC--------CTGGC- ************** * * *** * ** * ** **** ** ** *** * ** ** ***** block2704919 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000059031 ENSRNOG00000004257 Ctps2 block2704919 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000059030 ENSRNOG00000004257 Ctps2 block2704919 ((.((.(((((..((...((((.((.((((.((((.((((((((.((((((.(((.........)) ))))))).)))..))))).))))..)))).)).)))).)).)))))..))..)) 0.700 -57.80 # human284p79 ((((((((((((((.((((.((.((((.....)))))).)))).....)))...))) .)))))) ))... 0.999 -29.90 # #block2704919 chromosome:X:52534661:52534780:-1 Same_strand|Intronic_non-coding|ENSRNOT00000059031|ENSRNOG00000004257 ## Same_strand|Boundary_non-coding|ENSRNOT00000005669|ENSRNOG00000004257 ## Same_strand|Intronic_coding|ENSRNOT00000059030|ENSRNOG00000004257 ## ENSRNOG00000004257|protein_coding|Ctps2|CTP synthase 2 (EC 6.3.4.2) (UTP--ammonia ligase 2) (CTP synthetase 2). [Source:UniProtKB/Swiss-Prot;Acc:Q5U2N0] #human284p79 chromosome:5:175070841:175070909:1 intergenic ========== block2835051 [novel_cloningOK_randfoldOK] ========== #randfold block2835051: 0.001 #forester #identity: 0.00 block2835051 TTACCTTGTCCAAAAGCATCTC #rat_gr1101694_libT3S1 22 2 block2835051 TTACCTTGTCCAAAAGCATC #rat_gr1101693_libT4S1 20 2 block2835051 TTACCTTGTCCAAAAGCATC #rat_gr1101693_libT5S1 20 2 block2835051 TTACCTTGTCCAAAAGCATCTC #rat_gr1101694_libT3S2 22 1 block2835051 TTACCTTGTCCAAAAGCATC #rat_gr1101693_libT2S2 20 1 block2835051 TTACCTTGTCCAAAAGCATC #rat_gr1101693_libT3S1 20 1 block2835051 TTACCTTGTCCAAAAGCA #rat_gr1101692_libT1S2 18 1 block2835051 TTACCTTGTCCAAAAGCA #rat_gr1101692_libT2S1 18 1 block2835051 TTACCTTGTCCAAAAGCA #rat_gr1101692_libT3S2 18 1 block2835051 ctgtcagtccacggaggcatcaccagagatgcttctggacaatgggaaaatagatctctagaaattaatgTTACCTTGTCCAAAAGCATCTCtggtgctgccagaagtttatctgttcat ************************************************************************************************************************ block2835051 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000046779 ENSRNOG00000037484 block2835051 .((.(((...((...((((.((((((((((((((.(((((((.((....((.(((........))).))....))))))))).)))))))))))))).))))....))....)))..)). 0.430 -47.70 # #block2835051 chromosome:X:139996899:139997018:-1 Opposite_strand|Intronic_coding|ENSRNOT00000046779|ENSRNOG00000037484 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000056740|ENSRNOG00000037484 ## ENSRNOG00000037484|protein_coding|| ========== block2895936 [novel_cloningHIGH_randfoldOK] ========== #randfold block2895936: 0.001 #forester #identity: 0.00 block2895936 AAAGATGCCACGCTATGTAGATC #rat_gr16298_libT5S1 23 62 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT5S1 21 49 block2895936 AAAGATGCCACGCTATGTAG #rat_gr16295_libT5S1 20 25 block2895936 AAAGATGCCACGCTATGTAGAT #rat_gr16297_libT5S1 22 7 block2895936 AAAGATGCCACGCTATGTAGATC #rat_gr16298_libT1S2 23 5 block2895936 AAGATGCCACGCTATGTAGATC #rat_gr43941_libT5S1 22 4 block2895936 AAGATGCCACGCTATGTAGAT #rat_gr43940_libT5S1 21 4 block2895936 AAGATGCCACGCTATGTAGA #rat_gr43939_libT5S1 20 2 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT1S2 21 2 block2895936 AAAGATGCCACGCTATGT #rat_gr16293_libT5S1 18 2 block2895936 AAGATGCCACGCTATGTAGA #rat_gr43939_libT1S1 20 1 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT1S1 21 1 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT2S1 21 1 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT2S2 21 1 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT3S2 21 1 block2895936 AAAGATGCCACGCTATGTAGA #rat_gr16296_libT4S1 21 1 block2895936 GAAAGATGCCACGCTATGTAGA #rat_gr479829_libT5S1 22 1 block2895936 AAGATGCCACGCTATGTA #rat_gr43938_libT5S1 18 1 block2895936 AAAGATGCCACGCTATGTA #rat_gr16294_libT2S2 19 1 block2895936 AAAGATGCCACGCTATGTA #rat_gr16294_libT5S1 19 1 block2895936 aatgtctcatgtgcattggtctacatagattggtacctatcatgtaaaataagtgtgAAAGATGCCACGCTATGTAGATCaacgctcatgacattc ************************************************************************************************ block2895936 ((((((..(((.((.(((((((((((((..(((((.((.((((...........)))).)).)))))..))))))))))))).)).))))))))). 1.000 -38.10 # #block2895936 chromosome:X:152842633:152842728:-1 intergenic ========== block182671 [novel_cloningOK_randfoldOK] ========== #randfold block182671: 0.001 #forester #identity: 0.00 block182671 GTCCCCACCGTGGTTGCAGA #rat_gr636926_libT1S2 20 2 block182671 GTCCCCACCGTGGTTGCAGA #rat_gr636926_libT1S2 20 2 block182671 TGTCCCCACCGTGGTTGCAGACA #rat_gr1079589_libT1S1 23 1 block182671 TGTCCCCACCGTGGTTGCAGACA #rat_gr1079589_libT1S1 23 1 block182671 GTCCCCACCGTGGTTGCAGAC #rat_gr636927_libT5S1 21 1 block182671 GTCCCCACCGTGGTTGCAGAC #rat_gr636927_libT5S1 21 1 block182671 TGTCCCCACCGTGGTTGCAGAC #rat_gr1079588_libT3S2 22 1 block182671 TGTCCCCACCGTGGTTGCAGAC #rat_gr1079588_libT3S2 22 1 block182671 TGTCCCCACCGTGGTTGCAGA #rat_gr1079587_libT3S2 21 1 block182671 TGTCCCCACCGTGGTTGCAGA #rat_gr1079587_libT3S2 21 1 block182671 ccaccatggttgcagacatgtgctacgtgcTGTCCCCACCGTGGTTGCAGACAtgtgctacgtgcTGTCCCCACCGTGGTTGCAGACAtgtgctatgtgctgtccccactgtggt ******************************************************************************************************************* block182671 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001412 ENSRNOG00000001065 Pscd3 block182671 ((((..(((..(((((((((.((.(((((((((..((((.((((..((((.((((.....))))))))..)))).))))..)))).)))))))))))).))))..)))..)))). 1.000 -57.40 # #block182671 chromosome:12:11178279:11178393:-1 Same_strand|Intronic_coding|ENSRNOT00000001412|ENSRNOG00000001065 ## ENSRNOG00000001065|protein_coding|Pscd3|Cytohesin-3 (PH, SEC7 and coiled-coil domain-containing protein 3) (SEC7 homolog C) (rSec7-3). [Source:UniProtKB/Swiss-Prot;Acc:P97696] ## {Repeats: trf 52 75 0 class=trf} ========== block182672 [novel_cloningOK_randfoldOK] ========== #randfold block182672: 0.001 #forester #identity: 0.00 block182672 GTCCCCACCGTGGTTGCAGA #rat_gr636926_libT1S2 20 2 block182672 GTCCCCACCGTGGTTGCAGA #rat_gr636926_libT1S2 20 2 block182672 TGTCCCCACCGTGGTTGCAGACA #rat_gr1079589_libT1S1 23 1 block182672 TGTCCCCACCGTGGTTGCAGACA #rat_gr1079589_libT1S1 23 1 block182672 GTCCCCACCGTGGTTGCAGAC #rat_gr636927_libT5S1 21 1 block182672 GTCCCCACCGTGGTTGCAGAC #rat_gr636927_libT5S1 21 1 block182672 TGTCCCCACCGTGGTTGCAGAC #rat_gr1079588_libT3S2 22 1 block182672 TGTCCCCACCGTGGTTGCAGAC #rat_gr1079588_libT3S2 22 1 block182672 TGTCCCCACCGTGGTTGCAGA #rat_gr1079587_libT3S2 21 1 block182672 TGTCCCCACCGTGGTTGCAGA #rat_gr1079587_libT3S2 21 1 block182672 cccaccatggttgcagacatgtgctacgtgcTGTCCCCACCGTGGTTGCAGACAtgtgctacgtgcTGTCCCCACCGTGGTTGCAGACAtgtgctatgtgctgtccccactgtgg ******************************************************************************************************************* block182672 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001412 ENSRNOG00000001065 Pscd3 block182672 .((((..(((..(((((((((.((.(((((((((..((((.((((..((((.((((.....))))))))..)))).))))..)))).)))))))))))).))))..)))..)))) 1.000 -57.10 # #block182672 chromosome:12:11178280:11178394:-1 Same_strand|Intronic_coding|ENSRNOT00000001412|ENSRNOG00000001065 ## ENSRNOG00000001065|protein_coding|Pscd3|Cytohesin-3 (PH, SEC7 and coiled-coil domain-containing protein 3) (SEC7 homolog C) (rSec7-3). [Source:UniProtKB/Swiss-Prot;Acc:P97696] ## {Repeats: trf 87 110 0 class=trf} ========== block283058 [novel_cloningOK_randfoldOK] ========== #randfold block283058: 0.002 #forester #identity: 0.00 block283058 TACCTCCAGAGCAGGAAGTGG #rat_gr750863_libT3S1 21 2 block283058 TACCTCCAGAGCAGGAAGTGG #rat_gr750863_libT4S2 21 2 block283058 TACCTCCAGAGCAGGAAGTGGA #rat_gr750864_libT4S2 22 1 block283058 ACCTCCAGAGCAGGAAGTGG #rat_gr105786_libT4S1 20 1 block283058 TACCTCCAGAGCAGGAAGTGG #rat_gr750863_libT3S2 21 1 block283058 TACCTCCAGAGCAGGAAGTGG #rat_gr750863_libT4S1 21 1 block283058 TACCTCCAGAGCAGGAAGTG #rat_gr750862_libT3S1 20 1 block283058 TACCTCCAGAGCAGGAAG #rat_gr750861_libT4S1 18 1 block283058 agcagccttccccgtagccttctcacttcctgctgtggaggcagctagctcgctaggctcagttgcTACCTCCAGAGCAGGAAGTGGAggtgtgcgtgctc ***************************************************************************************************** block283058 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004783 ENSRNOG00000003583 Smyd2 block283058 ((((........((((..((((.(((((((((((.(((((((((((((((.....)))).))))))...))))).)))))))))))))))..)))))))). 1.000 -51.90 # #block283058 chromosome:13:106191144:106191244:-1 Same_strand|Intronic_coding|ENSRNOT00000004783|ENSRNOG00000003583 ## ENSRNOG00000003583|protein_coding|Smyd2|SET and MYND domain-containing protein 2. [Source:UniProtKB/Swiss-Prot;Acc:Q7M6Z3] ========== block735436 [novel_cloningHIGH_randfoldOK] ========== #randfold block735436: 0.004 #forester #identity: 0.00 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT3S1 23 23 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT3S2 23 18 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT4S2 23 12 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT4S2 22 4 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT5S2 23 4 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT3S1 21 3 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT2S1 22 3 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT4S1 22 3 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT2S2 23 3 block735436 ATACCAGGATGTCAGCATAGTT #rat_gr208318_libT3S2 22 3 block735436 CTATACCAGGATGTCAGC #rat_gr414482_libT3S2 18 2 block735436 TATACCAGGATGTCAGCA #rat_gr791612_libT3S1 18 2 block735436 TATACCAGGATGTCAGCA #rat_gr791612_libT3S2 18 2 block735436 TATACCAGGATGTCAGCA #rat_gr791612_libT4S1 18 2 block735436 TATACCAGGATGTCAGCAT #rat_gr791613_libT3S1 19 2 block735436 TATACCAGGATGTCAGCATA #rat_gr791614_libT3S2 20 2 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT4S1 21 2 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT4S2 21 2 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT1S1 22 2 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT3S1 22 2 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT5S1 23 2 block735436 ACTATACCAGGATGTCAGC #rat_gr115987_libT3S2 19 1 block735436 ACTATACCAGGATGTCAGCA #rat_gr115988_libT3S1 20 1 block735436 CTATACCAGGATGTCAGC #rat_gr414482_libT3S1 18 1 block735436 TATACCAGGATGTCAGCA #rat_gr791612_libT2S1 18 1 block735436 TATACCAGGATGTCAGCA #rat_gr791612_libT4S2 18 1 block735436 TATACCAGGATGTCAGCAT #rat_gr791613_libT3S2 19 1 block735436 TATACCAGGATGTCAGCAT #rat_gr791613_libT4S2 19 1 block735436 TATACCAGGATGTCAGCATA #rat_gr791614_libT2S1 20 1 block735436 TATACCAGGATGTCAGCATA #rat_gr791614_libT4S1 20 1 block735436 TATACCAGGATGTCAGCATA #rat_gr791614_libT4S2 20 1 block735436 TATACCAGGATGTCAGCATA #rat_gr791614_libT5S2 20 1 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT1S1 21 1 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT1S2 21 1 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT2S2 21 1 block735436 TATACCAGGATGTCAGCATAG #rat_gr791615_libT3S2 21 1 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT1S2 22 1 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT2S2 22 1 block735436 TATACCAGGATGTCAGCATAGT #rat_gr791616_libT5S1 22 1 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT2S1 23 1 block735436 TATACCAGGATGTCAGCATAGTT #rat_gr791617_libT4S1 23 1 block735436 ATACCAGGATGTCAGCATAG #rat_gr208316_libT1S2 20 1 block735436 ATACCAGGATGTCAGCATAG #rat_gr208316_libT3S1 20 1 block735436 ATACCAGGATGTCAGCATAGT #rat_gr208317_libT3S1 21 1 block735436 ATACCAGGATGTCAGCATAGTT #rat_gr208318_libT2S2 22 1 block735436 ATACCAGGATGTCAGCATAGTT #rat_gr208318_libT5S2 22 1 block735436 TACCAGGATGTCAGCATAGT #rat_gr747968_libT3S1 20 1 block735436 TACCAGGATGTCAGCATAGTT #rat_gr747969_libT3S1 21 1 block735436 TACCAGGATGTCAGCATAGTT #rat_gr747969_libT4S1 21 1 block735436 ACCAGGATGTCAGCATAGT #rat_gr91688_libT4S2 19 1 block735436 ACCAGGATGTCAGCATAGTT #rat_gr91689_libT3S1 20 1 block735436 ACCAGGATGTCAGCATAGTT #rat_gr91689_libT3S2 20 1 block735436 CCAGGATGTCAGCATAGTT #rat_gr333493_libT3S2 19 1 block735436 gggagaaaagcagccaatagctggttggcattctgggcctggttcatgccaactctgttgttaacTATACCAGGATGTCAGCATAGTTgcttaccca ************************************************************************************************* block735436 (((....(((((((...((....(((((((((((((...(((((.((..((....))..)).)))))..))))))))))))).))))))))).))). 0.770 -35.00 # #block735436 chromosome:18:28178215:28178311:1 intergenic ========== sblock10007 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10007: 0.002 randfold humanZ7p81_sblock10007: 0.001 randfold mouseZ22p81_sblock10007: 0.001 #forester humanZ7p81_sblock10007: 0.772196 forester mouseZ22p81_sblock10007: 0.824705 #identity: 91.72 sblock10007 CTTCAACCTTAAGGGGGCCTC #rat_gr459792_libT1S1 21 6 sblock10007 CTTCAACCTTAAGGGGGCCTCA #rat_gr459793_libT1S2 22 5 sblock10007 CTTCAACCTTAAGGGGGCCTCA #rat_gr459793_libT1S1 22 3 sblock10007 CTTCAACCTTAAGGGGGCCTC #rat_gr459792_libT1S2 21 3 sblock10007 CTTCAACCTTAAGGGGGCCTC #rat_gr459792_libT4S2 21 3 sblock10007 CTTCAACCTTAAGGGGGCCT #rat_gr459791_libT1S2 20 3 sblock10007 CTTCAACCTTAAGGGGGCC #rat_gr459790_libT1S1 19 3 sblock10007 CTTCAACCTTAAGGGGGCCTC #rat_gr459792_libT4S1 21 2 sblock10007 CTTCAACCTTAAGGGGGCC #rat_gr459790_libT5S2 19 2 sblock10007 CCTTAAGGGGGCCTCAGGGAG #rat_gr382448_libT3S2 21 1 sblock10007 TCAACCTTAAGGGGGCCTCAGG #rat_gr806771_libT1S1 22 1 sblock10007 CTTCAACCTTAAGGGGGCCTCA #rat_gr459793_libT4S2 22 1 sblock10007 CTTCAACCTTAAGGGGGCCTCA #rat_gr459793_libT5S2 22 1 sblock10007 TTCAACCTTAAGGGGGCCTC #rat_gr1107641_libT1S2 20 1 sblock10007 TTCAACCTTAAGGGGGCCTC #rat_gr1107641_libT4S2 20 1 sblock10007 CTTCAACCTTAAGGGGGCCTC #rat_gr459792_libT3S2 21 1 sblock10007 TTCAACCTTAAGGGGGCCT #rat_gr1107640_libT1S1 19 1 sblock10007 CTTCAACCTTAAGGGGGCCT #rat_gr459791_libT1S1 20 1 sblock10007 CTTCAACCTTAAGGGGGCCT #rat_gr459791_libT4S2 20 1 sblock10007 TTCAACCTTAAGGGGGCC #rat_gr1107639_libT1S1 18 1 sblock10007 CTTCAACCTTAAGGGGGCC #rat_gr459790_libT1S2 19 1 sblock10007 CTTCAACCTTAAGGGGGCC #rat_gr459790_libT3S2 19 1 sblock10007 CTTCAACCTTAAGGGGGCC #rat_gr459790_libT4S1 19 1 sblock10007 CTTCAACCTTAAGGGGGC #rat_gr459789_libT2S1 18 1 sblock10007 GGCCTCCGCAGGGTTGAAGCT #rat_gr596830_libT1S2 21 3 sblock10007 TGGCCTCCGCAGGGTTGAAGCT #rat_gr1012291_libT1S1 22 3 sblock10007 GGCCTCCGCAGGGTTGAAGCT #rat_gr596830_libT1S1 21 2 sblock10007 GGCCTCCGCAGGGTTGAAGCT #rat_gr596830_libT3S1 21 2 sblock10007 CTCCGCAGGGTTGAAGCT #rat_gr424702_libT1S1 18 1 sblock10007 TGGCCTCCGCAGGGTTGAAGCT #rat_gr1012291_libT5S1 22 1 sblock10007 GGCCTCCGCAGGGTTGAA #rat_gr596829_libT3S1 18 1 sblock10007 TGGCCTCCGCAGGGTTGA #rat_gr1012290_libT1S1 18 1 sblock10007 CCATCACCACACGACTGGATTTTGGCCTCCGCAGGGTTGAAGCTGCTAGAGAAGCTTCAACCTTAAGGGGGCCTCAGGGAGAGAGGAGTGG humanZ7p81 -------------------TTTCGGCCTCTGCAGGGTGTAAGCTGCTAAAGAAGCTTCAACCTTAAGGGGGCCTCA--------------- mouseZ22p81 --------------------TTTGGCCTCCGCGGGGTTGAAGCTGCTAGAGACGCTTCAACCTTAAGGGGGCCTCA--------------- ** ****** ** **** ********* *** *********************** sblock10007 ...................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #ENSRNOT00000010876 ENSRNOG00000008225 sblock10007 ((((..((......((((.....(((((((..((((((((((((........))))))))))))..))))))))))).......)).)))) 0.810 -40.02 # humanZ7p81 ....(((((((..(((((..(((((........)))))..)))))..)))))))... 1.000 -25.60 # mouseZ22p81 ...(((((((..(((((((((((..........)))))))))))..)))))))... 1.000 -31.90 # #sblock10007 chromosome:6:76163538:76163628:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000010876|ENSRNOG00000008225 ## intergenic ## ENSRNOG00000008225|pseudogene|| #humanZ7p81 chromosome:14:35348148:35348278:-1 Same_strand|Boundary_non-coding|ENST00000389698|ENSG00000174373|protein_coding|GTPase-activating Rap/Ran-GAP domain-like 1 (GAP-related-interacting partner to E12)(GRIPE)(Tuberin-like protein 1) [Source:UniProtKB/Swiss-Prot;Acc:Q6GYQ0] ## {SimpF: oe = 0.78 0 CpG,rank = 1 -1 FirstEF} #mouseZ22p81 chromosome:12:56922030:56922160:-1 Same_strand|Boundary_non-coding|ENSMUST00000110687|ENSMUSG00000021027|protein_coding|GTPase activating RANGAP domain-like 1 Gene [Source:MGI Symbol;Acc:MGI:1931050] ## Opposite_strand|Boundary_non-coding|ENSMUST00000061934|ENSMUSG00000046747|pseudogene| ## {SimpF: oe = 0.97 1 CpG, 1 Eponine} ========== sblock10242 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10242: 0.001 #forester #identity: 0.00 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT3S2 22 6 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT3S2 24 6 sblock10242 CCATAGAAGTCATCCCACA #rat_gr335683_libT2S1 19 4 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT2S1 22 4 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT3S1 22 4 sblock10242 CCATAGAAGTCATCCCACAGTGC #rat_gr335687_libT2S2 23 4 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT2S1 24 4 sblock10242 CCATAGAAGTCATCCCAC #rat_gr335682_libT2S1 18 3 sblock10242 CCATAGAAGTCATCCCACA #rat_gr335683_libT3S1 19 3 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT5S1 20 3 sblock10242 CCATAGAAGTCATCCCACAGT #rat_gr335685_libT3S1 21 3 sblock10242 CCATAGAAGTCATCCCAC #rat_gr335682_libT4S2 18 2 sblock10242 CCATAGAAGTCATCCCAC #rat_gr335682_libT5S1 18 2 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT2S1 20 2 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT3S1 20 2 sblock10242 CCATAGAAGTCATCCCACAGT #rat_gr335685_libT2S1 21 2 sblock10242 CCATAGAAGTCATCCCACAGT #rat_gr335685_libT2S2 21 2 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT1S1 22 2 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT2S2 22 2 sblock10242 CCATAGAAGTCATCCCACAGTGC #rat_gr335687_libT3S2 23 2 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT3S1 24 2 sblock10242 CCATAGAAGTCATCCCAC #rat_gr335682_libT3S1 18 1 sblock10242 CCATAGAAGTCATCCCAC #rat_gr335682_libT3S2 18 1 sblock10242 CCATAGAAGTCATCCCACA #rat_gr335683_libT3S2 19 1 sblock10242 CCATAGAAGTCATCCCACA #rat_gr335683_libT4S1 19 1 sblock10242 CCATAGAAGTCATCCCACA #rat_gr335683_libT4S2 19 1 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT3S2 20 1 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT4S2 20 1 sblock10242 CCATAGAAGTCATCCCACAG #rat_gr335684_libT5S2 20 1 sblock10242 CCATAGAAGTCATCCCACAGT #rat_gr335685_libT5S2 21 1 sblock10242 CCATAGAAGTCATCCCACAGTG #rat_gr335686_libT5S1 22 1 sblock10242 CCATAGAAGTCATCCCACAGTGC #rat_gr335687_libT4S2 23 1 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT4S1 24 1 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT4S2 24 1 sblock10242 CCATAGAAGTCATCCCACAGTGCC #rat_gr335688_libT5S1 24 1 sblock10242 CATAGAAGTCATCCCACA #rat_gr307583_libT5S2 18 1 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT3S1 21 4 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT2S1 21 3 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT2S2 21 2 sblock10242 CACTGTGGAGGGTTTCTAT #rat_gr284862_libT3S1 19 1 sblock10242 CACTGTGGAGGGTTTCTATGTC #rat_gr284863_libT3S1 22 1 sblock10242 CACTGTGGAGGGTTTCTATGTC #rat_gr284863_libT3S2 22 1 sblock10242 ACTGTGGAGGGTTTCTAT #rat_gr127259_libT2S2 18 1 sblock10242 ACTGTGGAGGGTTTCTAT #rat_gr127259_libT5S1 18 1 sblock10242 ACTGTGGAGGGTTTCTATG #rat_gr127260_libT3S1 19 1 sblock10242 ACTGTGGAGGGTTTCTATG #rat_gr127260_libT5S2 19 1 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT1S2 21 1 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT3S2 21 1 sblock10242 ACTGTGGAGGGTTTCTATGTC #rat_gr127261_libT5S2 21 1 sblock10242 ACTGTGGAGGGTTTCTATGTCA #rat_gr127262_libT3S1 22 1 sblock10242 CTGTGGAGGGTTTCTATGTC #rat_gr455961_libT3S1 20 1 sblock10242 CTGTGGAGGGTTTCTATGTC #rat_gr455961_libT3S2 20 1 sblock10242 gcagctggaccttcacccgggctgtCCATAGAAGTCATCCCACAGTGCCttcaaggagggcatcggcACTGTGGAGGGTTTCTATGTCagcctgagtggtacagatccatgctg ****************************************************************************************************************** sblock10242 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000020178 ENSRNOG00000014879 Ttc7 sblock10242 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061747 ENSRNOG00000014879 Ttc7 sblock10242 .((((((((.((((((.(((((((..((((((((((...((((((((((...............))))))))))..)))))))))).))))))).))))...)).)))).)))) 1.000 -55.66 # #sblock10242 chromosome:6:10867923:10868036:1 Same_strand|Intronic_coding|ENSRNOT00000061747|ENSRNOG00000014879 ## ENSRNOG00000014879|protein_coding|Ttc7|Ttc7 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G027] ========== sblock10772 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10772: 0.001 #forester #identity: 0.00 sblock10772 TATCCAGGGTAGACACTCAGA #rat_gr794255_libT2S1 21 2 sblock10772 ACTGTGTCAATCCAGGGTAGAC #rat_gr127353_libT3S1 22 1 sblock10772 agggcagacactcagaacctgagACTGTGTCAATCCAGGGTAGACactcagaacctgagactgtgtcTATCCAGGGTAGACACTCAGAacctgaggcagcatatgtcct ************************************************************************************************************* sblock10772 ((((((....(((((...((((....(((((.((((.((((((((((((((...))))....)))))))))).)))).)))))))))...)))))........)))))) 0.970 -45.20 # #sblock10772 chromosome:7:22452263:22452371:-1 intergenic ## {Repeats: trf 12 33 0 class=trf,trf 6 27 0 class=trf,trf 55 77 0 class=trf,trf 49 71 0 class=trf} ========== sblock10893 [novel_cloningOK_multiarm_DicerOK_randfoldOK] ========== #randfold sblock10893: 0.004 #forester #identity: 0.00 sblock10893 TAGAAAAGCAGCAGAGCTTG #rat_gr757260_libT1S1 20 1 sblock10893 TCCCCAGAGGTAGAAAAGCAGCAGAG #rat_gr843557_libT5S1 26 1 sblock10893 TGCTATTTCTTAATCCGGAGA #rat_gr971716_libT5S1 21 15 sblock10893 CTGCTATTTCTTAATCCGGAGA #rat_gr444585_libT5S1 22 8 sblock10893 TGCTATTTCTTAATCCGGAGAA #rat_gr971717_libT5S1 22 2 sblock10893 TGCTATTTCTTAATCCGGAGA #rat_gr971716_libT1S2 21 2 sblock10893 TGCTATTTCTTAATCCGGAG #rat_gr971715_libT5S1 20 2 sblock10893 CTGCTATTTCTTAATCCGGAG #rat_gr444584_libT5S1 21 2 sblock10893 GCTATTTCTTAATCCGGAGA #rat_gr567708_libT5S1 20 1 sblock10893 CTGCTATTTCTTAATCCG #rat_gr444583_libT5S1 18 1 sblock10893 tggcaagtctCTGCTATTTCTTAATCCGGAGAatttgaggtagaagagctgggtcacaaagtctccccagaggtagaaaagcagcagagcttgct *********************************************************************************************** sblock10893 .((((((.(((((((.(((((...((.(((((.((((.(((((.....)))..)).)))).)))))...))...)))))...))))))))))))) 0.980 -32.90 # #sblock10893 chromosome:7:96046923:96047017:-1 intergenic ========== sblock12415 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12415: 0.008 randfold mouseZ39p85_sblock12415: 0.028 #forester mouseZ39p85_sblock12415: 0.754706 #identity: 95.35 sblock12415 CTGGAAACCTGCCTCCTTTC #rat_gr445954_libT1S1 20 1 sblock12415 AAGGC--CTCTAGGTTTCCACTAC #rat_gr51046_libT1S1 22 2 sblock12415 GCTGCCCGGTCCCTGGAAACCTGCCTCCTTTCTTTTTATTTCATACTGGAAAGGC--CTCTAGGTTTCCACTACAAACTTCCCGCCGC mouseZ39p85 GCTGCCCAGTCCCTGGAAACCAGTCTCCTTTCTTTTTATTTCATACTGGAAAGGCCTCTCTGGGTTTCCACTACAAACTTCCCGCCGC ******* ************* * ******************************* **** ************************** sblock12415 ((.((..(((...((((((((((...(((((((..............))))))). ...))))))))))......)))....)).)) 0.970 -22.14 # mouseZ39p85 ((.((..(((...((((((((((...(((((((..............))))))).....)))).))))))......)))....)).)) 0.929 -20.24 # #sblock12415 chromosome:9:37604262:37604347:1 intergenic #mouseZ39p85 chromosome:1:38685061:38685148:1 Opposite_strand|Intronic_non-coding|ENSMUST00000027250|ENSMUSG00000037138|protein_coding|AF4/FMR2 family, member 3 Gene [Source:MGI (curated);Acc:Aff3-002] ## Opposite_strand|Boundary_non-coding|ENSMUST00000095027|ENSMUSG00000037138|protein_coding|AF4/FMR2 family, member 3 Gene [Source:MGI (curated);Acc:Aff3-002] ========== sblock12458 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12458: 0.003 #forester #identity: 0.00 sblock12458 AGCTGTGTGTATGCAGGCA #rat_gr167397_libT2S2 19 2 sblock12458 AGCTGTGTGTATGCAGGC #rat_gr167396_libT5S1 18 1 sblock12458 AGCTGTGTGTATGCAGGCA #rat_gr167397_libT5S1 19 1 sblock12458 AGCTGTGTGTATGCAGGCAATG #rat_gr167398_libT1S2 22 1 sblock12458 AGCTGTGTGTATGCAGGCAATGG #rat_gr167399_libT3S1 23 1 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT4S2 21 10 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT3S1 21 8 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT4S2 19 5 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT4S2 20 5 sblock12458 CAGCCTGCTCACACCCAGCCTC #rat_gr294533_libT4S2 22 5 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT3S1 20 4 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT2S2 21 4 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT4S1 21 4 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT1S1 20 3 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT2S2 20 3 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT4S1 20 3 sblock12458 CAGCCTGCTCACACCCAGCCTC #rat_gr294533_libT4S1 22 3 sblock12458 CAGCCTGCTCACACCCAG #rat_gr294529_libT4S2 18 2 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT1S1 19 2 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT2S2 19 2 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT3S1 19 2 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT4S1 19 2 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT5S1 19 2 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT5S1 20 2 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT1S1 21 2 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT5S2 21 2 sblock12458 CAGCCTGCTCACACCCAGCCTC #rat_gr294533_libT3S1 22 2 sblock12458 CCAGCCTGCTCACACCCAG #rat_gr332378_libT3S1 19 1 sblock12458 CCAGCCTGCTCACACCCAG #rat_gr332378_libT4S1 19 1 sblock12458 CAGCCTGCTCACACCCAG #rat_gr294529_libT3S1 18 1 sblock12458 CAGCCTGCTCACACCCAGC #rat_gr294530_libT5S2 19 1 sblock12458 CAGCCTGCTCACACCCAGCC #rat_gr294531_libT1S2 20 1 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT3S2 21 1 sblock12458 CAGCCTGCTCACACCCAGCCT #rat_gr294532_libT5S1 21 1 sblock12458 CAGCCTGCTCACACCCAGCCTC #rat_gr294533_libT3S2 22 1 sblock12458 CAGCCTGCTCACACCCAGCCTC #rat_gr294533_libT5S2 22 1 sblock12458 AGCCTGCTCACACCCAGCCT #rat_gr160522_libT3S1 20 1 sblock12458 gcatgacagggagtccgggagctgtgtgtatgcaggcaatggagaaggtgttaagtgtttcCAGCCTGCTCACACCCAGCCTCgaacacatccctcattgtt ****************************************************************************************************** sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042562 ENSRNOG00000031232 Nrp2 sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048645 ENSRNOG00000031232 Nrp2 sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047847 ENSRNOG00000031232 Nrp2 sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000043803 ENSRNOG00000031232 Nrp2 sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047568 ENSRNOG00000031232 Nrp2 sblock12458 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000050917 ENSRNOG00000031232 Nrp2 sblock12458 (((....(((((((.((((.((((.((((..((((((..((((((............))))))))))))..)))).)))))))).))...)))))...))). 1.000 -41.50 # #sblock12458 chromosome:9:61355069:61355170:1 Same_strand|Intronic_coding|ENSRNOT00000047568|ENSRNOG00000031232 ## ENSRNOG00000031232|protein_coding|Nrp2|Neuropilin-2 precursor (Vascular endothelial cell growth factor 165 receptor 2). [Source:UniProtKB/Swiss-Prot;Acc:O35276] ========== sblock12672 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12672: 0.002 randfold mouse18p86_sblock12672: 0.002 #forester mouse18p86_sblock12672: 0.841993 #identity: 95.00 sblock12672 AACCCAGGTTTGGAGTATCGG #rat_gr32548_libT4S2 21 1 sblock12672 AACCCAGGTTTGGAGTATCGG #rat_gr32548_libT5S1 21 1 sblock12672 AACCCAGGTTTGGAGTATCG #rat_gr32547_libT3S1 20 1 sblock12672 AGATGTTCCATCCATGGGTTTG #rat_gr148147_libT1S1 22 2 sblock12672 GCTATGAGGTTAGTAGTGCTCCAGATGTTCCATCCATGGGTTTGGTCAGTAGCCACAGAATAAACCCAGGTTTGGAGTATCGGCAGCATTTGCTTCTTCGTGG mouse18p86 ----------------------AGATGTTCCACCCATGGGTTTGGTCAGTAGCCACAGAGTAAACCCAAGTTTGGAGTATCG--------------------- ********** ************************** ******** ************* sblock12672 .((((((((..(((((((((((.(((((((((.((.((((((((.((.((....)).)).))))))))))..))))))))))).)))))).))).)))))))) 1.000 -42.50 # mouse18p86 .(((((((((....((((((((.((.((....)).)).))))))))....))))))))). 1.000 -22.10 # #sblock12672 chromosome:X:71865181:71865283:-1 intergenic #mouse18p86 chromosome:5:24794877:24795019:-1 Same_strand|Exonic_coding|ENSMUST00000088250|ENSMUSG00000038056|protein_coding|myeloid/lymphoid or mixed-lineage leukemia 3 Gene [Source:MGI Symbol;Acc:MGI:2444959] ========== sblock12689 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12689: 0.001 #forester #identity: 0.00 sblock12689 ATGTAGTACTGAGTCTGTC #rat_gr236378_libT2S2 19 11 sblock12689 ATGTAGTACTGAGTCTGTC #rat_gr236378_libT2S1 19 8 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT2S1 21 6 sblock12689 TGTAGTACTGAGTCTGTC #rat_gr1076454_libT2S1 18 6 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT2S1 22 5 sblock12689 ATGTAGTACTGAGTCTGT #rat_gr236377_libT2S2 18 5 sblock12689 ATGTAGTACTGAGTCTGTCGTGC #rat_gr236382_libT2S1 23 4 sblock12689 TGTAGTACTGAGTCTGTC #rat_gr1076454_libT1S1 18 3 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT3S1 21 2 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT4S2 21 2 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT5S1 21 2 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT2S2 22 2 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT4S2 22 2 sblock12689 ATGTAGTACTGAGTCTGTCGT #rat_gr236380_libT2S1 21 2 sblock12689 ATGTAGTACTGAGTCTGTCGT #rat_gr236380_libT3S1 21 2 sblock12689 ATGTAGTACTGAGTCTGTCGT #rat_gr236380_libT5S1 21 2 sblock12689 ATGTAGTACTGAGTCTGTCG #rat_gr236379_libT2S1 20 2 sblock12689 TGTAGTACTGAGTCTGTC #rat_gr1076454_libT4S1 18 2 sblock12689 ATGTAGTACTGAGTCTGTC #rat_gr236378_libT5S2 19 2 sblock12689 ATGTAGTACTGAGTCTGT #rat_gr236377_libT2S1 18 2 sblock12689 ATGTAGTACTGAGTCTGT #rat_gr236377_libT5S2 18 2 sblock12689 ATGTAGTACTGAGTCTGTCGTGCA #rat_gr236383_libT2S1 24 1 sblock12689 ATGTAGTACTGAGTCTGTCGTGCA #rat_gr236383_libT2S2 24 1 sblock12689 TGTAGTACTGAGTCTGTCGTGC #rat_gr1076458_libT5S1 22 1 sblock12689 GTAGTACTGAGTCTGTCGTG #rat_gr630549_libT2S2 20 1 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT1S2 21 1 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT2S2 21 1 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT3S2 21 1 sblock12689 TGTAGTACTGAGTCTGTCGTG #rat_gr1076457_libT5S2 21 1 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT1S1 22 1 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT3S1 22 1 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT5S1 22 1 sblock12689 ATGTAGTACTGAGTCTGTCGTG #rat_gr236381_libT5S2 22 1 sblock12689 TGTAGTACTGAGTCTGTCGT #rat_gr1076456_libT2S1 20 1 sblock12689 ATGTAGTACTGAGTCTGTCGT #rat_gr236380_libT5S2 21 1 sblock12689 TGTAGTACTGAGTCTGTCG #rat_gr1076455_libT2S1 19 1 sblock12689 TGTAGTACTGAGTCTGTCG #rat_gr1076455_libT2S2 19 1 sblock12689 TGTAGTACTGAGTCTGTCG #rat_gr1076455_libT3S2 19 1 sblock12689 TGTAGTACTGAGTCTGTCG #rat_gr1076455_libT4S1 19 1 sblock12689 ATGTAGTACTGAGTCTGTCG #rat_gr236379_libT5S2 20 1 sblock12689 TGTAGTACTGAGTCTGTC #rat_gr1076454_libT3S1 18 1 sblock12689 ATGTAGTACTGAGTCTGTC #rat_gr236378_libT1S2 19 1 sblock12689 ATGTAGTACTGAGTCTGTC #rat_gr236378_libT5S1 19 1 sblock12689 ATGTAGTACTGAGTCTGT #rat_gr236377_libT4S2 18 1 sblock12689 AATGTAGTACTGAGTCTG #rat_gr63921_libT4S2 18 1 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT2S1 22 2923 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT2S2 22 2527 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT5S1 22 1364 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT5S2 22 890 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT3S1 22 682 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT1S1 22 399 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT2S1 19 360 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT2S2 19 358 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT3S2 22 342 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT4S2 22 341 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT2S1 18 297 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT2S2 18 294 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT4S1 22 249 sblock12689 TGACAGACTTAGTACTACATGA #rat_gr932135_libT1S2 22 247 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT2S1 21 227 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT2S2 21 210 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT2S2 20 174 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT2S1 20 152 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT5S1 18 132 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT5S1 19 130 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT5S2 19 103 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT2S2 24 99 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT3S1 19 89 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT3S1 18 85 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT5S2 18 85 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT2S1 24 83 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT4S2 19 72 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT5S1 21 63 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT5S2 21 58 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT5S1 20 55 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT3S1 21 54 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT3S2 19 54 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT4S2 18 53 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT1S1 19 47 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT3S1 20 45 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT4S2 21 41 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT5S2 20 41 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT2S2 21 40 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT1S1 18 40 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT1S2 19 38 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT2S1 21 36 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT1S1 20 36 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT4S1 18 35 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT1S1 21 30 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT5S1 21 28 sblock12689 TGACAGACTTAGTACTACA #rat_gr932132_libT4S1 19 27 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT3S2 18 27 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT5S1 24 26 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT3S2 21 26 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT1S2 20 26 sblock12689 TGACAGACTTAGTACTAC #rat_gr932131_libT1S2 18 26 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT4S2 20 24 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT4S1 21 22 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT3S2 20 20 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT4S2 24 18 sblock12689 TGACAGACTTAGTACTACATG #rat_gr932134_libT1S2 21 16 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT3S1 24 13 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT3S2 24 13 sblock12689 TGACAGACTTAGTACTACAT #rat_gr932133_libT4S1 20 11 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT5S2 24 10 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT1S2 24 9 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT3S1 21 9 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT5S2 21 9 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT1S1 24 8 sblock12689 GACAGACTTAGTACTACATG #rat_gr493215_libT2S1 20 8 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT2S1 23 6 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT5S2 23 6 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT4S2 21 5 sblock12689 GACAGACTTAGTACTACATG #rat_gr493215_libT2S2 20 5 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT3S2 21 4 sblock12689 GACAGACTTAGTACTACAT #rat_gr493214_libT5S2 19 4 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT2S2 18 4 sblock12689 TGACAGACTTAGTACTACATGATC #rat_gr932137_libT4S1 24 3 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT5S1 23 3 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT1S1 21 3 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT1S2 21 3 sblock12689 GACAGACTTAGTACTACAT #rat_gr493214_libT2S1 19 3 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT2S1 18 3 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT5S2 18 3 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT2S2 23 2 sblock12689 GACAGACTTAGTACTACATG #rat_gr493215_libT5S1 20 2 sblock12689 GTGACAGACTTAGTACTACATG #rat_gr643846_libT1S2 22 2 sblock12689 GACAGACTTAGTACTACAT #rat_gr493214_libT1S1 19 2 sblock12689 GACAGACTTAGTACTACAT #rat_gr493214_libT2S2 19 2 sblock12689 GTGACAGACTTAGTACTACAT #rat_gr643845_libT2S2 21 2 sblock12689 CGTGACAGACTTAGTACTACAT #rat_gr404736_libT5S2 22 2 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT1S1 18 2 sblock12689 GACAGACTTAGTACTACATGATC #rat_gr493218_libT2S1 23 1 sblock12689 GACAGACTTAGTACTACATGATC #rat_gr493218_libT5S1 23 1 sblock12689 GACAGACTTAGTACTACATGAT #rat_gr493217_libT2S2 22 1 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT1S1 23 1 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT1S2 23 1 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT3S1 23 1 sblock12689 TGACAGACTTAGTACTACATGAT #rat_gr932136_libT4S2 23 1 sblock12689 GACAGACTTAGTACTACATGA #rat_gr493216_libT4S1 21 1 sblock12689 GTGACAGACTTAGTACTACATGA #rat_gr643847_libT3S1 23 1 sblock12689 ACAGACTTAGTACTACATG #rat_gr77200_libT3S1 19 1 sblock12689 GACAGACTTAGTACTACATG #rat_gr493215_libT3S1 20 1 sblock12689 GACAGACTTAGTACTACATG #rat_gr493215_libT3S2 20 1 sblock12689 GTGACAGACTTAGTACTACATG #rat_gr643846_libT2S1 22 1 sblock12689 GTGACAGACTTAGTACTACAT #rat_gr643845_libT2S1 21 1 sblock12689 GTGACAGACTTAGTACTACAT #rat_gr643845_libT3S1 21 1 sblock12689 GTGACAGACTTAGTACTACAT #rat_gr643845_libT5S1 21 1 sblock12689 GTGACAGACTTAGTACTACAT #rat_gr643845_libT5S2 21 1 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT3S2 18 1 sblock12689 GACAGACTTAGTACTACA #rat_gr493213_libT5S1 18 1 sblock12689 GTGACAGACTTAGTACTACA #rat_gr643844_libT2S2 20 1 sblock12689 GTGACAGACTTAGTACTACA #rat_gr643844_libT5S2 20 1 sblock12689 ctcagaagaaagcctttttctctctgcgTGACAGACTTAGTACTACATGAtccatgttaatgaaactaatgtagtactgagtctgtcgtgcagtgagtaaaaaaatccaaagaga ******************************************************************************************************************* sblock12689 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003714 ENSRNOG00000002751 Zdhhc15 sblock12689 (((....((.....((((((((.(((((((((((((((((((((((((....(((....)))......))))))))))))))))))))))))).))).)))))..))....))). 0.430 -47.00 # #sblock12689 chromosome:X:92588220:92588334:-1 Same_strand|Intronic_coding|ENSRNOT00000003714|ENSRNOG00000002751 ## ENSRNOG00000002751|protein_coding|Zdhhc15|Palmitoyltransferase ZDHHC15 (EC 2.3.1.-) (Zinc finger DHHC domain- containing protein 15) (DHHC-15). [Source:UniProtKB/Swiss-Prot;Acc:Q2TGJ4] ========== sblock12740 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK] ========== #randfold sblock12740: 0.001 #forester #identity: 0.00 sblock12740 TGAACGGCCCTTGTTGTGAGG #rat_gr925561_libT5S2 21 9 sblock12740 TGAACGGCCCTTGTTGTGAGG #rat_gr925561_libT5S1 21 8 sblock12740 TGAACGGCCCTTGTTGTGAG #rat_gr925560_libT5S1 20 8 sblock12740 TGAACGGCCCTTGTTGTGAG #rat_gr925560_libT5S2 20 8 sblock12740 TGAACGGCCCTTGTTGTGA #rat_gr925559_libT5S1 19 7 sblock12740 TGAACGGCCCTTGTTGTGA #rat_gr925559_libT4S2 19 4 sblock12740 TGAACGGCCCTTGTTGTGA #rat_gr925559_libT5S2 19 4 sblock12740 TGAACGGCCCTTGTTGTG #rat_gr925558_libT5S1 18 3 sblock12740 TGAACGGCCCTTGTTGTGAGG #rat_gr925561_libT4S1 21 2 sblock12740 TGAACGGCCCTTGTTGTGAG #rat_gr925560_libT2S1 20 2 sblock12740 TGAACGGCCCTTGTTGTGAG #rat_gr925560_libT4S1 20 2 sblock12740 TGAACGGCCCTTGTTGTG #rat_gr925558_libT4S2 18 2 sblock12740 TGAACGGCCCTTGTTGTGAGG #rat_gr925561_libT3S1 21 1 sblock12740 TGAACGGCCCTTGTTGTGAGG #rat_gr925561_libT4S2 21 1 sblock12740 TGAACGGCCCTTGTTGTGAG #rat_gr925560_libT4S2 20 1 sblock12740 TGAACGGCCCTTGTTGTGA #rat_gr925559_libT1S2 19 1 sblock12740 TGAACGGCCCTTGTTGTG #rat_gr925558_libT4S1 18 1 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT5S2 21 39 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT5S1 21 19 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT5S2 22 13 sblock12740 TTCACAAGAAGGTGTCTTTCATG #rat_gr1109417_libT5S2 23 9 sblock12740 TTCACAAGAAGGTGTCTTTCATG #rat_gr1109417_libT5S1 23 8 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT4S2 21 7 sblock12740 TTCACAAGAAGGTGTCTT #rat_gr1109412_libT5S1 18 7 sblock12740 TTCACAAGAAGGTGTCTTTC #rat_gr1109414_libT5S2 20 5 sblock12740 TTCACAAGAAGGTGTCTT #rat_gr1109412_libT5S2 18 5 sblock12740 TTCACAAGAAGGTGTCTTTCATG #rat_gr1109417_libT4S1 23 4 sblock12740 TTCACAAGAAGGTGTCTTTCATG #rat_gr1109417_libT4S2 23 4 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT4S1 21 3 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT5S1 22 2 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT3S2 21 2 sblock12740 TTCACAAGAAGGTGTCTTTC #rat_gr1109414_libT5S1 20 2 sblock12740 TTCACAAGAAGGTGTCTTTCATG #rat_gr1109417_libT3S1 23 1 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT2S2 22 1 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT3S2 22 1 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT4S1 22 1 sblock12740 TTCACAAGAAGGTGTCTTTCAT #rat_gr1109416_libT4S2 22 1 sblock12740 TCACAAGAAGGTGTCTTTCA #rat_gr810124_libT5S2 20 1 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT2S1 21 1 sblock12740 TTCACAAGAAGGTGTCTTTCA #rat_gr1109415_libT3S1 21 1 sblock12740 TTCACAAGAAGGTGTCTTTC #rat_gr1109414_libT4S1 20 1 sblock12740 TTCACAAGAAGGTGTCTTT #rat_gr1109413_libT3S2 19 1 sblock12740 TTCACAAGAAGGTGTCTTT #rat_gr1109413_libT4S1 19 1 sblock12740 TTCACAAGAAGGTGTCTTT #rat_gr1109413_libT4S2 19 1 sblock12740 TTCACAAGAAGGTGTCTT #rat_gr1109412_libT4S2 18 1 sblock12740 gccacatggagcaaatctgtgtgcagtgcttTTCACAAGAAGGTGTCTTTCATggggattaaaacatgaacggcccttgttgtgaggagtaatgtacaacatgtaatgcctgtgtggt ********************************************************************************************************************** sblock12740 (((((((((.(((.((.((((((((.((((((((((((.((((.(((.((((((..........)))))).))))))).)))))))))))).)))))).)).))..)))))))))))) 1.000 -55.70 # #sblock12740 chromosome:X:154164067:154164184:-1 intergenic ========== sblock1792 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock1792: 0.001 #forester #identity: 0.00 sblock1792 GGAGGACAGCAGACTCAGGTC #rat_gr588577_libT1S2 21 3 sblock1792 CGGAGGACAGCAGACTCA #rat_gr397306_libT1S1 18 1 sblock1792 CCTGAGTCTGCGCTCCTCTCCA #rat_gr378072_libT1S1 22 1 sblock1792 cagtcccttcctCGGAGGACAGCAGACTCAGGTCgaaatcgggaCCTGAGTCTGCGCTCCTCTCCAgccctagact **************************************************************************** sblock1792 -------------------------------------------------------------------------------------- #ENSRNOT00000046359 ENSRNOG00000020961 LOC687564 sblock1792 .((((........((((((..(((((((((((((........)))))))))))))..)))))).........)))) 1.000 -37.63 # #sblock1792 chromosome:1:85634969:85635044:1 Opposite_strand|Intronic_non-coding|ENSRNOT00000046359|ENSRNOG00000020961 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000028477|ENSRNOG00000020961 ## ENSRNOG00000020961|protein_coding|LOC687564| ========== sblock2275 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock2275: 0.001 randfold human101p88_sblock2275: 0.013 randfold mouseZ64p88_sblock2275: 0.067 #forester human101p88_sblock2275: 0.317802 forester mouseZ64p88_sblock2275: 0.593302 #identity: 76.92 sblock2275 GGT-TGGGCCCTGG-AAGAACTA #rat_gr625546_libT3S2 21 1 sblock2275 TGTTCTTCCCGTGCAGAA-GCAGC #rat_gr1092661_libT4S2 23 1 sblock2275 TGTTCTTCCCGTGCAGAA-GCAGC #rat_gr1092661_libT5S2 23 1 sblock2275 TGTTCTTCCCGTGCAGAA-GCAG #rat_gr1092660_libT3S2 22 1 sblock2275 TGTTCTTCCCGTGCAGAA #rat_gr1092659_libT1S1 18 1 sblock2275 TGCACCAAACACCAGTGGGCTTGTTCTTCCCGTGCAGAA-GCAGCAGAGATATCAGGCTGGT-TGGGCCCTGG-AAGAACTAGCCACTTGGTGTGACTGGGCAG human101p88 ---------------------TGCTCTTCCA---------GGAGCAAGACCAACGTGTGGGT-TGGGCCCTGGAAAGAAGTC---------------------- mouseZ64p88 ---------------------TGTTCTTCCCAACTAGAAGGCAGCAGAGATATCAGGCTGGCATGGGCCCTGG-AAGAAAT----------------------- ** ****** * **** * * * ** ********** ***** * sblock2275 ++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++ ++++++++++ +++++++++++++++++++++++++++++++++++ #ENSRNOT00000004416 ENSRNOG00000003234 Mgrn1 sblock2275 ++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++ ++++++++++ +++++++++++++++++++++++++++++++++++ #ENSRNOT00000040619 ENSRNOG00000003234 Mgrn1 sblock2275 (((.(((.(((((((..((((.((((((((...((..(( .((((.((....))..)))).) )..))...)) )))))).))))..)))))))...)))))). 1.000 -47.20 # human101p88 .((((((((( ((.((..((((........))) )..))))))))).)).)). 1.000 -20.90 # mouseZ64p88 ..(((((((...(((....(((((.((....))..))).)).))).....)) ))))).. 0.840 -15.10 # #sblock2275 chromosome:10:10778320:10778420:-1 Same_strand|Boundary_non-coding|ENSRNOT00000037009|ENSRNOG00000003234 ## Same_strand|Intronic_coding|ENSRNOT00000040619|ENSRNOG00000003234 ## ENSRNOG00000003234|protein_coding|Mgrn1|Probable E3 ubiquitin-protein ligase MGRN1 (EC 6.3.2.-) (Mahogunin RING finger protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIQ4] #human101p88 chromosome:14:99973231:99973371:-1 Opposite_strand|Intronic_coding|ENST00000335290|ENSG00000176473|protein_coding|WD repeat-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q64LD2] #mouseZ64p88 chromosome:16:4913375:4913515:1 Same_strand|Intronic_coding|ENSMUST00000070658|ENSMUSG00000022517|protein_coding|mahogunin, ring finger 1 Gene [Source:MGI Symbol;Acc:MGI:2447670] ========== sblock2545 [novel_multiarm_DicerOK_mirtron_randfoldOK] ========== #randfold sblock2545: 0.002 #forester #identity: 0.00 sblock2545 TAGTGCAACCCCTGTCCCCACA #rat_gr786591_libT1S1 22 1 sblock2545 TTGGGGCAGTGGCTGGATGGGA #rat_gr1144796_libT1S1 22 1 sblock2545 tctggtatatcaggcttgctgtgatTTGGGGCAGTGGCTGGATGGGAggggactcacagccctatctcTAGTGCAACCCCTGTCCCCACAggtctagagcctgagatccaga **************************************************************************************************************** sblock2545 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000005977 ENSRNOG00000004430 NP_001101780.1 sblock2545 (((((....((((((((.(((((....(((((((.((.((.((.(((((((........)))...)))).)).)).)).)))))))))))).....))))))))...))))) 0.960 -50.80 # #sblock2545 chromosome:10:109478589:109478700:-1 Same_strand|Intronic_coding|ENSRNOT00000005977|ENSRNOG00000004430 ## ENSRNOG00000004430|protein_coding|NP_001101780.1|5-azacytidine induced gene 1 [Source:RefSeq_peptide;Acc:NP_001101780] ========== sblock3286 [novel_cloningOK_multiarm_DicerOK] ========== #randfold sblock3286: 0.012 #forester #identity: 0.00 sblock3286 TGGGCACTTATTTCCTGACAGAC #rat_gr1034759_libT4S2 23 4 sblock3286 TGGGCACTTATTTCCTGACAG #rat_gr1034758_libT4S2 21 4 sblock3286 TGGGCACTTATTTCCTGACAGAC #rat_gr1034759_libT4S1 23 3 sblock3286 TGGGCACTTATTTCCTGACAGAC #rat_gr1034759_libT5S1 23 2 sblock3286 TGGGCACTTATTTCCTGACAGAC #rat_gr1034759_libT3S1 23 1 sblock3286 CTGGGCACTTATTTCCTG #rat_gr450570_libT4S1 18 1 sblock3286 AGTCAGGACATTGTGACCAG #rat_gr196547_libT4S2 20 4 sblock3286 AGTCAGGACATTGTGACCAGGA #rat_gr196549_libT4S1 22 2 sblock3286 AGTCAGGACATTGTGACCAGGA #rat_gr196549_libT5S2 22 2 sblock3286 AGTCAGGACATTGTGACCAGG #rat_gr196548_libT1S1 21 2 sblock3286 AGTCAGGACATTGTGACCAGG #rat_gr196548_libT4S2 21 2 sblock3286 AGTCAGGACATTGTGACCAG #rat_gr196547_libT1S1 20 2 sblock3286 AGTCAGGACATTGTGACCAG #rat_gr196547_libT3S1 20 2 sblock3286 AGTCAGGACATTGTGACCAGGAA #rat_gr196550_libT4S1 23 1 sblock3286 AGTCAGGACATTGTGACCAGGAA #rat_gr196550_libT4S2 23 1 sblock3286 AGTCAGGACATTGTGACCAGGAA #rat_gr196550_libT5S1 23 1 sblock3286 AGTCAGGACATTGTGACCAGGA #rat_gr196549_libT4S2 22 1 sblock3286 AGTCAGGACATTGTGACCAGGA #rat_gr196549_libT5S1 22 1 sblock3286 AGTCAGGACATTGTGACCAGG #rat_gr196548_libT3S1 21 1 sblock3286 AGTCAGGACATTGTGACCAGG #rat_gr196548_libT5S2 21 1 sblock3286 AGTCAGGACATTGTGACCAG #rat_gr196547_libT1S2 20 1 sblock3286 AGTCAGGACATTGTGACC #rat_gr196546_libT1S1 18 1 sblock3286 AGTCAGGACATTGTGACC #rat_gr196546_libT5S2 18 1 sblock3286 gccaccctgatctcatggggtcAGTCAGGACATTGTGACCAGGAagtactttgcatggttcTGGGCACTTATTTCCTGACAGACgccagaacagagtgctgggctggt ************************************************************************************************************ sblock3286 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001490 ENSRNOG00000001128 RGD1566317_predicted sblock3286 (((((((....(((.(((.(((.(((((((.((.(((.((((((.((.....))....)))))).)))..)).))))))).))).))).....)))....))).)))) 0.990 -43.60 # #sblock3286 chromosome:12:39675898:39676005:-1 Same_strand|Intronic_coding|ENSRNOT00000001490|ENSRNOG00000001128 ## ENSRNOG00000001128|protein_coding|RGD1566317_predicted| ========== sblock508 [MANUAL_level1] ========== #randfold sblock508: 0.001 randfold mouseZ79p92_sblock508: 0.002 #forester mouseZ79p92_sblock508: 0.942259 #identity: 95.16 sblock508 TAGGCTAGAAAGAGGTTGG #rat_gr779101_libT1S1 19 45 sblock508 TAGGCTAGAAAGAGGTTG #rat_gr779100_libT1S1 18 22 sblock508 TAGGCTAGAAAGAGGTTGGGGA #rat_gr779104_libT1S1 22 19 sblock508 TAGGCTAGAAAGAGGTTGGG #rat_gr779102_libT1S1 20 19 sblock508 TAGGCTAGAAAGAGGTTGGG #rat_gr779102_libT1S2 20 18 sblock508 TAGGCTAGAAAGAGGTTGG #rat_gr779101_libT1S2 19 18 sblock508 TAGGCTAGAAAGAGGTTG #rat_gr779100_libT1S2 18 14 sblock508 TAGGCTAGAAAGAGGTTGGGGA #rat_gr779104_libT1S2 22 5 sblock508 TAGGCTAGAAAGAGGTTGGGG #rat_gr779103_libT1S1 21 4 sblock508 TAGGCTAGAAAGAGGTTGGGG #rat_gr779103_libT1S2 21 2 sblock508 CCAGCTTCCTTCCAGCCCTTG #rat_gr333057_libT1S2 21 3 sblock508 CCAGCTTCCTTCCAGCCCTT #rat_gr333056_libT1S2 20 2 sblock508 CCAGCTTCCTTCCAGCCCTTGA #rat_gr333058_libT1S1 22 1 sblock508 CCAGCTTCCTTCCAGCCCTTGA #rat_gr333058_libT1S2 22 1 sblock508 CCAGCTTCCTTCCAGCCCTT #rat_gr333056_libT1S1 20 1 sblock508 CCAGCTTCCTTCCAGCCC #rat_gr333055_libT1S1 18 1 sblock508 CCAGCTTCCTTCCAGCCC #rat_gr333055_libT1S2 18 1 sblock508 TGAGCGATCGATCCCCAT #rat_gr944285_libT1S2 18 2 sblock508 GAGCGATCGATCCCCATCC #rat_gr509704_libT1S1 19 1 sblock508 CCTGCTGAGCGATCGATCCCCATCCCAGCTTCCTTCCAGCCCTTGATGTTTCAGTATGCACATAGGCTAGAAAGAGGTTGGGGATGGGGAAAGATGAGAGCATCGGATGCAGG mouseZ79p92 ----------------------TCCCAGCTTCCTTCCAGCCCTTGATGTTTTAGTACGCACATAGGCTAGAGAGAGGTTGGGGA----------------------------- ***************************** **** ************** ************ sblock508 ((((((((((.(((..((((((((((((((((.(((.((((..((.(((........)))))..)))).))).))))))))).)))))))..)))....)).)))...))))) 0.910 -52.70 # mouseZ79p92 ((((((((((.(((.((((..((.(((........)))))..)))).))).)))))))))). 1.000 -27.10 # #sblock508 chromosome:1:65425840:65425952:-1 intergenic #mouseZ79p92 chromosome:7:6756267:6756419:1 Same_strand|Intronic_non-coding|ENSMUST00000054055|ENSMUSG00000051527|protein_coding|ubiquitin specific peptidase 29 Gene [Source:MGI Symbol;Acc:MGI:1888998] ========== sblock5255 [novel_cloningHIGH_multiarm_DicerOK_mirtron] ========== #randfold sblock5255: 0.022 #forester #identity: 0.00 sblock5255 GTAGGGAGAGTGGGGCATTG #rat_gr630398_libT1S2 20 1 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT1S1 22 8 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT1S1 20 7 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT3S1 22 5 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT4S1 22 5 sblock5255 AAGGCTCTTCTTTCCTTGC #rat_gr51578_libT1S1 19 4 sblock5255 AAGGCTCTTCTTTCCTTGC #rat_gr51578_libT1S2 19 4 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT1S1 21 4 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT4S2 22 4 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT5S1 22 4 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT1S2 21 3 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT5S2 21 3 sblock5255 AAGGCTCTTCTTTCCTTG #rat_gr51577_libT4S2 18 2 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT1S2 20 2 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT3S1 20 2 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT4S2 20 2 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT5S1 20 2 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT3S2 21 2 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT5S2 22 2 sblock5255 AAGGCTCTTCTTTCCTTG #rat_gr51577_libT1S2 18 1 sblock5255 AAGGCTCTTCTTTCCTTG #rat_gr51577_libT4S1 18 1 sblock5255 AAGGCTCTTCTTTCCTTG #rat_gr51577_libT5S2 18 1 sblock5255 AAGGCTCTTCTTTCCTTGC #rat_gr51578_libT3S2 19 1 sblock5255 AAGGCTCTTCTTTCCTTGC #rat_gr51578_libT4S1 19 1 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT2S2 20 1 sblock5255 AAGGCTCTTCTTTCCTTGCA #rat_gr51579_libT3S2 20 1 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT2S2 21 1 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT4S1 21 1 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT4S2 21 1 sblock5255 AAGGCTCTTCTTTCCTTGCAG #rat_gr51580_libT5S1 21 1 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT1S2 22 1 sblock5255 AAGGCTCTTCTTTCCTTGCAGT #rat_gr51581_libT3S2 22 1 sblock5255 cctgaagaaatcgagaactatggtagggagagtggggcattggagctgcacagaggagggtcaggcctctgggtggtagaaccAAGGCTCTTCTTTCCTTGCAGTgcaccgaatcgg ********************************************************************************************************************* sblock5255 >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> #ENSRNOT00000018114 ENSRNOG00000012771 LOC688806 sblock5255 .((((.....(((...(((...((((((((((.(((((.((((..((((.((((((.........))))))....))))..)))).))))).)))))))))))))....))).)))) 0.930 -44.30 # #sblock5255 chromosome:17:15151552:15151668:1 Same_strand|Boundary_coding|ENSRNOT00000018114|ENSRNOG00000012771 ## ENSRNOG00000012771|protein_coding|LOC688806|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:RefSeq_peptide;Acc:NP_001101516] ========== sblock5924 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock5924: 0.002 #forester #identity: 0.00 sblock5924 ATCCCTCAAGCTTTCCCCAG #rat_gr220539_libT1S2 20 1 sblock5924 TGGGAAATGCAAAGAGGGAAG #rat_gr1020742_libT1S1 21 1 sblock5924 gttccaaacagcttcactattatctgtcttctgtATCCCTCAAGCTTTCCCCAGtgaacacagcacccTGGGAAATGCAAAGAGGGAAGacagagaggagcatggggtggga **************************************************************************************************************** sblock5924 -------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000025424 ENSRNOG00000018801 Klhdc4 sblock5924 .(((((..(((((((.......(((((((......((((((..((((((((..(((.......)))...)))))).))...)))))))))))))..))))).))...))))) 0.990 -40.30 # #sblock5924 chromosome:19:52056159:52056270:1 Opposite_strand|Intronic_coding|ENSRNOT00000025424|ENSRNOG00000018801 ## ENSRNOG00000018801|protein_coding|Klhdc4|kelch domain containing 4 Gene [Source:MGI Symbol;Acc:MGI:2384569] ========== sblock646 (miRNA) [MANUAL_level1] ========== #randfold sblock646: 0.001 randfold mouse86p94_sblock646: 0.001 #forester mouse86p94_sblock646: 0.842098 #identity: 90.77 sblock646 GATATAACCAAAGCCCGACTGT #rat_gr519189_libT1S2 22 122 sblock646 GATATAACCAAAGCCCGAC #rat_gr519186_libT1S1 19 44 sblock646 GATATAACCAAAGCCCGACT #rat_gr519187_libT1S1 20 43 sblock646 GATATAACCAAAGCCCGACTGT #rat_gr519189_libT1S1 22 40 sblock646 GATATAACCAAAGCCCGAC #rat_gr519186_libT1S2 19 32 sblock646 GATATAACCAAAGCCCGACTG #rat_gr519188_libT1S1 21 26 sblock646 GATATAACCAAAGCCCGACTG #rat_gr519188_libT1S2 21 26 sblock646 GATATAACCAAAGCCCGACT #rat_gr519187_libT1S2 20 13 sblock646 ATAACCAAAGCCCGACTGT #rat_gr205449_libT1S2 19 8 sblock646 GATATAACCAAAGCCCGACTGTT #rat_gr519190_libT1S2 23 7 sblock646 GATATAACCAAAGCCCGA #rat_gr519185_libT1S2 18 5 sblock646 GATATAACCAAAGCCCGA #rat_gr519185_libT1S1 18 4 sblock646 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S1 18 2 sblock646 GATATAACCAAAGCCCGACTGTT #rat_gr519190_libT2S1 23 1 sblock646 ATAACCAAAGCCCGACTGT #rat_gr205449_libT1S1 19 1 sblock646 TATAACCAAAGCCCGACTGT #rat_gr790571_libT1S2 20 1 sblock646 ATATAACCAAAGCCCGACTGT #rat_gr210942_libT1S2 21 1 sblock646 GATATAACCAAAGCCCGACTGT #rat_gr519189_libT2S1 22 1 sblock646 GGATATAACCAAAGCCCGACTGT #rat_gr590277_libT1S2 23 1 sblock646 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S2 18 1 sblock646 GATATAACCAAAGCCCGAC #rat_gr519186_libT5S2 19 1 sblock646 TGGATATAACCAAAGCCCGAC #rat_gr1005587_libT1S1 21 1 sblock646 CTGGATATAACCAAAGCCCGAC #rat_gr447880_libT1S1 22 1 sblock646 TGGATATAACCAAAGCCC #rat_gr1005586_libT1S2 18 1 sblock646 CTGGATATAACCAAAGCCC #rat_gr447879_libT1S1 19 1 sblock646 CTGGATATAACCAAAGCCC #rat_gr447879_libT1S2 19 1 sblock646 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S1 19 17 sblock646 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S1 18 17 sblock646 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S2 19 15 sblock646 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S1 23 9 sblock646 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S2 23 5 sblock646 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S1 20 4 sblock646 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S1 22 3 sblock646 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S2 22 3 sblock646 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S1 18 3 sblock646 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S2 18 3 sblock646 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S1 21 2 sblock646 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S2 21 2 sblock646 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S1 20 2 sblock646 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S2 20 2 sblock646 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S2 20 2 sblock646 AGGCTGCTGGTTATATTCC #rat_gr182866_libT1S1 19 1 sblock646 AGTCAGGCTGCTGGTTATATT #rat_gr196577_libT1S2 21 1 sblock646 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S2 18 1 sblock646 AGAGACCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTCTCTGGTCCTGGATATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGTGTCT mouse86p94 ----------TCAGTCAGGCTTCTGGCTATATTCCAGGACTTACCTGGTCCTGGATATAACCAAAGCCTGACTAT----------------------- *********** **** *************** ************************ **** * sblock646 .......(((.(((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))))..................... 0.450 -40.80 # mouse86p94 ..((((((((((.(((.((((.(((((((((.....))))))))))))).))))))))))))).. 1.000 -38.60 # #sblock646 chromosome:1:115319456:115319553:-1 intergenic #mouse86p94 chromosome:7:68880382:68880519:-1 Same_strand|Boundary_non-coding|ENSMUST00000104677|ENSMUSG00000077869|miRNA| ========== sblock647 [MANUAL_level1] ========== #randfold sblock647: 0.001 randfold mouse111p94_sblock647: 0.001 #forester mouse111p94_sblock647: 0.848406 #identity: 90.77 sblock647 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S2 22 288 sblock647 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S1 19 193 sblock647 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S1 22 139 sblock647 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S1 20 131 sblock647 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S2 19 131 sblock647 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S1 21 59 sblock647 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S2 20 42 sblock647 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S2 21 27 sblock647 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S2 18 19 sblock647 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S1 18 17 sblock647 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S2 23 10 sblock647 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S1 23 7 sblock647 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S2 19 4 sblock647 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S1 21 2 sblock647 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S1 18 2 sblock647 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S1 18 2 sblock647 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S1 19 1 sblock647 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S2 21 1 sblock647 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT3S1 22 1 sblock647 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S2 18 1 sblock647 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S2 18 1 sblock647 GGTATAACCAAAGCCCGAC #rat_gr618625_libT2S2 19 1 sblock647 GGTATAACCAAAGCCCGAC #rat_gr618625_libT5S2 19 1 sblock647 TGGGTATAACCAAAGCCCGAC #rat_gr1057770_libT1S2 21 1 sblock647 GGTCCTGGGTATAACCAAAG #rat_gr619879_libT1S2 20 1 sblock647 TGGTCCTGGGTATAACCAA #rat_gr1064354_libT1S2 19 1 sblock647 AGTCAGGCTACTGGTTATA #rat_gr196565_libT1S2 19 3 sblock647 AGTCAGGCTACTGGTTATATTCC #rat_gr196567_libT1S2 23 1 sblock647 AGTCAGGCTACTGGTTATAT #rat_gr196566_libT1S2 20 1 sblock647 AGTCAGGCTACTGGTTAT #rat_gr196564_libT1S1 18 1 sblock647 GAGATCTGATCAGTCAGGCTACTGGTTATATTCCAGGACTAATCTGGTCCTGGGTATAACCAAAGCCCGACTGAATGGTGTTA mouse111p94 ---------TCAGTCAGGCTTCTGGCTATATTCCAGGACATACCTGGTCCTGGGTATAACCAAAGCCCGACTGT--------- *********** **** ************* * ****************************** sblock647 ((.(((...((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))..))).)). 1.000 -42.10 # mouse111p94 .(((((.(((((.(((.((((.((((((((.......)))))))))))).)))))))).))))). 1.000 -33.90 # #sblock647 chromosome:1:115329931:115330013:-1 intergenic #mouse111p94 chromosome:7:68884207:68884329:-1 intergenic ========== sblock650 [MANUAL_level1] ========== #randfold sblock650: 0.003 randfold mouseZ1p95_sblock650: 0.001 #forester mouseZ1p95_sblock650: 0.758892 #identity: 91.80 sblock650 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S1 19 193 sblock650 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S1 20 131 sblock650 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S2 19 131 sblock650 GGTATAACCAAAGCCCGACTGT #rat_gr618630_libT1S2 22 124 sblock650 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S1 21 59 sblock650 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S2 20 42 sblock650 GGTATAACCAAAGCCCGACTGT #rat_gr618630_libT1S1 22 27 sblock650 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S2 21 27 sblock650 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S2 18 19 sblock650 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S1 18 17 sblock650 ATAACCAAAGCCCGACTGT #rat_gr205449_libT1S2 19 8 sblock650 GGTATAACCAAAGCCCGACTGTT #rat_gr618631_libT1S2 23 4 sblock650 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S1 18 2 sblock650 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S1 18 2 sblock650 ATAACCAAAGCCCGACTGT #rat_gr205449_libT1S1 19 1 sblock650 TATAACCAAAGCCCGACTGT #rat_gr790571_libT1S2 20 1 sblock650 GTATAACCAAAGCCCGACTGT #rat_gr630942_libT1S2 21 1 sblock650 GGTATAACCAAAGCCCGACTGT #rat_gr618630_libT4S2 22 1 sblock650 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S2 18 1 sblock650 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S2 18 1 sblock650 GGTATAACCAAAGCCCGAC #rat_gr618625_libT2S2 19 1 sblock650 GGTATAACCAAAGCCCGAC #rat_gr618625_libT5S2 19 1 sblock650 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S1 19 17 sblock650 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S1 18 17 sblock650 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S2 19 15 sblock650 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S1 23 9 sblock650 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S2 23 5 sblock650 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S1 20 4 sblock650 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S1 22 3 sblock650 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S2 22 3 sblock650 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S1 18 3 sblock650 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S2 18 3 sblock650 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S1 21 2 sblock650 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S2 21 2 sblock650 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S1 20 2 sblock650 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S2 20 2 sblock650 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S2 20 2 sblock650 AGGCTGCTGGTTATATTCC #rat_gr182866_libT1S1 19 1 sblock650 AGTCAGGCTGCTGGTTATATT #rat_gr196577_libT1S2 21 1 sblock650 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S2 18 1 sblock650 TGGGGAGAGATCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTATCT-GTCCTAGGTATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGAGTCTGCAA mouseZ1p95 ---------------TCAGTCAGGCTTCTGGT--TATTGCAGGACTCATCTGGTCCTGGGTATAACT-AAGCCCGACTGT--------------------------- *********** ***** **** ******* **** ***** ******** ************ sblock650 ((.(((....(((...(((((.((((..((((((((((..(((((...... ))))).)))))))))).)))).))))).............))).....))).)). 0.450 -35.79 # mouseZ1p95 .(((((.((((..(((( (((..(((((((.....)))))))...)))))) ))))).))))). 1.000 -29.00 # #sblock650 chromosome:1:115346737:115346842:-1 intergenic #mouseZ1p95 chromosome:7:68882358:68882503:-1 intergenic ========== sblock651 [MANUAL_level1] ========== #randfold sblock651: 0.001 randfold mouse1p95_sblock651: 0.001 #forester mouse1p95_sblock651: 0.805461 #identity: 87.69 sblock651 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S2 22 288 sblock651 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S1 19 193 sblock651 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S1 22 139 sblock651 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S1 20 131 sblock651 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S2 19 131 sblock651 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S1 21 59 sblock651 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S2 20 42 sblock651 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S2 21 27 sblock651 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S2 18 19 sblock651 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S1 18 17 sblock651 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S2 23 10 sblock651 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S1 23 7 sblock651 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S2 19 4 sblock651 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S1 21 2 sblock651 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S1 18 2 sblock651 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S1 18 2 sblock651 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S1 19 1 sblock651 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S2 21 1 sblock651 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT3S1 22 1 sblock651 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S2 18 1 sblock651 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S2 18 1 sblock651 GGTATAACCAAAGCCCGAC #rat_gr618625_libT2S2 19 1 sblock651 GGTATAACCAAAGCCCGAC #rat_gr618625_libT5S2 19 1 sblock651 TGGGTATAACCAAAGCCCGAC #rat_gr1057770_libT1S2 21 1 sblock651 AGTCAGGCTACTGGTTATA #rat_gr196565_libT1S2 19 3 sblock651 AGTCAGGCTACTGGTTATATTCC #rat_gr196567_libT1S2 23 1 sblock651 AGTCAGGCTACTGGTTATAT #rat_gr196566_libT1S2 20 1 sblock651 AGTCAGGCTACTGGTTAT #rat_gr196564_libT1S1 18 1 sblock651 TCTGCAGGGAAAGATCTGATCAGTCAGGCTACTGGTTATATTCCAGGACTTGTCCAGTCCTGGGTATAACCAAAGCCCGACTGAATGGTGTTAAATAAAAGA mouse1p95 -------------------TCAGTCAGGCTTCTGGCTATATTCCAGGACATACCTGGTCCTGGGTATAACCAAAGCCCGACTGT------------------ *********** **** ************* * * *************************** sblock651 (((.......((.(((...((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))..))).)).......))) 0.470 -41.94 # mouse1p95 .(((((.(((((.(((.((((.((((((((.......)))))))))))).)))))))).))))). 1.000 -33.90 # #sblock651 chromosome:1:115352667:115352768:-1 intergenic #mouse1p95 chromosome:7:68884198:68884339:-1 intergenic ========== sblock652 [MANUAL_level1] ========== #randfold sblock652: 0.001 randfold mouse21p95_sblock652: 0.001 #forester mouse21p95_sblock652: 0.849421 #identity: 92.31 sblock652 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S2 22 288 sblock652 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S1 19 193 sblock652 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT1S1 22 139 sblock652 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S1 20 131 sblock652 GGTATAACCAAAGCCCGAC #rat_gr618625_libT1S2 19 131 sblock652 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S1 21 59 sblock652 GGTATAACCAAAGCCCGACT #rat_gr618626_libT1S2 20 42 sblock652 GGTATAACCAAAGCCCGACTG #rat_gr618627_libT1S2 21 27 sblock652 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S2 18 19 sblock652 GGTATAACCAAAGCCCGA #rat_gr618624_libT1S1 18 17 sblock652 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S2 23 10 sblock652 GGTATAACCAAAGCCCGACTGAA #rat_gr618629_libT1S1 23 7 sblock652 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S2 19 4 sblock652 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S1 21 2 sblock652 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S1 18 2 sblock652 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S1 18 2 sblock652 ATAACCAAAGCCCGACTGA #rat_gr205448_libT1S1 19 1 sblock652 GTATAACCAAAGCCCGACTGA #rat_gr630941_libT1S2 21 1 sblock652 GGTATAACCAAAGCCCGACTGA #rat_gr618628_libT3S1 22 1 sblock652 ATAACCAAAGCCCGACTG #rat_gr205447_libT1S2 18 1 sblock652 GTATAACCAAAGCCCGAC #rat_gr630940_libT1S2 18 1 sblock652 GGTATAACCAAAGCCCGAC #rat_gr618625_libT2S2 19 1 sblock652 GGTATAACCAAAGCCCGAC #rat_gr618625_libT5S2 19 1 sblock652 TGGGTATAACCAAAGCCCGAC #rat_gr1057770_libT1S2 21 1 sblock652 GGTCCTGGGTATAACCAAAG #rat_gr619879_libT1S2 20 1 sblock652 TGGTCCTGGGTATAACCAA #rat_gr1064354_libT1S2 19 1 sblock652 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S1 19 17 sblock652 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S1 18 17 sblock652 AGTCAGGCTGCTGGTTATA #rat_gr196575_libT1S2 19 15 sblock652 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S1 23 9 sblock652 AGTCAGGCTGCTGGTTATATTCC #rat_gr196579_libT1S2 23 5 sblock652 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S1 20 4 sblock652 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S1 22 3 sblock652 AGTCAGGCTGCTGGTTATATTC #rat_gr196578_libT1S2 22 3 sblock652 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S1 18 3 sblock652 AGTCAGGCTGCTGGTTAT #rat_gr196574_libT1S2 18 3 sblock652 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S1 21 2 sblock652 TCAGGCTGCTGGTTATATTCC #rat_gr819419_libT1S2 21 2 sblock652 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S1 20 2 sblock652 TCAGGCTGCTGGTTATATTC #rat_gr819418_libT1S2 20 2 sblock652 AGTCAGGCTGCTGGTTATAT #rat_gr196576_libT1S2 20 2 sblock652 AGGCTGCTGGTTATATTCC #rat_gr182866_libT1S1 19 1 sblock652 AGTCAGGCTGCTGGTTATATT #rat_gr196577_libT1S2 21 1 sblock652 TCAGGCTGCTGGTTATAT #rat_gr819417_libT1S2 18 1 sblock652 TTGTCTGCAAGGAGAGATCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTAATCTGGTCCTGGGTATAACCAAAGCCCGACTGAATGGTGTTAAATAAAAGAACAGT mouse21p95 ----------------------TCAGTCAGGCTTCTGGCTATATTCCAGGACATACCTGGTCCTGGGTATAACCAAAGCCCGACT-----------------------GT *********** **** ************* * ***************************** ** sblock652 ((((((.......((.(((...((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))..))).)).......))).))). 0.900 -46.04 # mouse21p95 .(((((.(((((.(((.((((.((((((((.......)))))))))))).)))))))).)))) ). 1.000 -33.90 # #sblock652 chromosome:1:115354288:115354397:-1 intergenic #mouse21p95 chromosome:7:68884193:68884342:-1 intergenic ========== sblock706 [novel_cloningOK_multiarm_DicerOK] ========== #randfold sblock706: 0.027 randfold mouseZ35p95_sblock706: 0.005 #forester mouseZ35p95_sblock706: 0.742237 #identity: 90.67 sblock706 TCTCAGCAAAGTATTGGGTAGA #rat_gr896027_libT5S1 22 18 sblock706 TCTCAGCAAAGTATTGGGT #rat_gr896026_libT5S1 19 3 sblock706 TCTCAGCAAAGTATTGGGTAGA #rat_gr896027_libT1S2 22 2 sblock706 CAGCAAAGTATTGGGTAGA #rat_gr290703_libT5S1 19 1 sblock706 TCTCAGCAAAGTATTGGGTAGA #rat_gr896027_libT2S1 22 1 sblock706 TCTCAGCAAAGTATTGGGTAGA #rat_gr896027_libT4S1 22 1 sblock706 TCTCAGCAAAGTATTGGG #rat_gr896025_libT1S2 18 1 sblock706 TGCCTTGTGAGAGCTGAGGA #rat_gr969519_libT5S1 20 3 sblock706 TGTGAGAGCTGAGGATTTC #rat_gr1083717_libT3S2 19 1 sblock706 ----------------CGGTCACTCCTCCCTGCCTTGTGAGAGCTGAGGATTTCAGCTGAGTATCTCAGCAAAGTATTGGGTAGATGGACAGTCCA----- mouseZ35p95 TCCTCACAACATGGGCTGCTCACTCCTCCCTGCCTTGTGAGAGCTGAGAACTTC-----AATATCTCAGCAATGTATCGGGTAGATGGACAGTCCAGAGGG * ***************************** * *** * *********** **** ****************** sblock706 .((....(((...((((((.(((...(((((((..(((....)))..)))))))....))).))))))..)))....)). 0.960 -26.60 # mouseZ35p95 .((((......(((((((.....(((...((((((.(((...(((((((..... ....)))))))....))).))))))..)))))))))))))). 0.970 -35.30 # #sblock706 chromosome:1:128997597:128997676:-1 intergenic #mouseZ35p95 chromosome:7:80927688:80927783:-1 intergenic ========== sblock9904 [novel_multiarm_DicerOK_randfoldOK] ========== #randfold sblock9904: 0.001 randfold mouseZ21p98_sblock9904: 0.002 #forester mouseZ21p98_sblock9904: 0.906727 #identity: 90.70 sblock9904 CCAGCTTGAGTTAACACAGTGA #rat_gr333077_libT1S2 22 3 sblock9904 CCAGCTTGAGTTAACACAGTGA #rat_gr333077_libT5S1 22 1 sblock9904 CCAGCTTGAGTTAACACAGTGA #rat_gr333077_libT5S2 22 1 sblock9904 ACTGTGTTGACCAACCTGGA #rat_gr127444_libT1S1 20 1 sblock9904 TCAAGAATTTATGAGGTTTCTACCACCCCACTGTGTTGACCAACCTGGAATCACTTTAATTTCCCAGCTTGAGTTAACACAGTGAAGGTGGCCGGAAATTGACTTCAGATCTGGA mouseZ21p98 --------------GGTTTCTGCCATCCCGCTGTGTCGACCAACCTGGAGTCACTTTAATTTCCCAGCTTGAGTTAACACAGTGAAGATAGCTGGAAATT--------------- ******* *** *** ****** ************ ************************************* * ** ******* sblock9904 ((.(((.....((((((((((.(((((.(((((((((((((((.((((...............)))).))).))))))))))))..)))))..)))....)))))))..))).)) 0.990 -41.86 # mouseZ21p98 .((((((((.(((.((((((((..(((((.((((...............)))).))).))..))))))))..))).)).)))))). 0.999 -29.56 # #sblock9904 chromosome:6:6148141:6148255:-1 intergenic #mouseZ21p98 chromosome:17:83228957:83229042:-1 intergenic