confident novel miRNAs
novel_multiarm_DicerOK_randfoldOK (7 loci)
sblock12415_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12415_novel 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12415_novel 3arm | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12415_novel 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12415_novel 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock12415 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.50/0.55 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 12 14 | 1 3 | 5arm 3arm | 1 1 | nd nd | 0.15 0.41 | 3 5 | 3 | 1 | 2 | 3 |
| Member of family novel78 (seed UGGAAAC): hsa-mir-147b, sblock12415_novel |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------AGGC--CUC---------------------------- | 2 | novel |
| seed | -------------UGGAAAC-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------------------------AAGGC--CTCTAGGTTTCCACTAC-------------- | 22 | 2 | |
| ------------CTGGAAACCTGCCTCCTTTC-------------------------------------------------------- | 20 | 1 | |
| rat | GCTGCCCGGTCCCTGGAAACCTGCCTCCTTTCTTTTTATTTCATACTGGAAAGGC--CTCTAGGTTTCCACTACAAACTTCCCGCCGC | ||
| mouse | GCTGCCCAGTCCCTGGAAACCAGTCTCCTTTCTTTTTATTTCATACTGGAAAGGCCTCTCTGGGTTTCCACTACAAACTTCCCGCCGC | ||
| ******* ************* * ******************************* **** ************************** | |||
| rat | ((.((..(((...((((((((((...(((((((..............))))))). ...))))))))))......)))....)).)) | 0.970 -22.14 | |
| mouse | ((.((..(((...((((((((((...(((((((..............))))))).....)))).))))))......)))....)).)) | 0.929 -20.24 |
| rat | chromosome:9:37604262:37604347:1 | intergenic |
| mouse | chromosome:1:38685061:38685148:1 | Opposite_strand|Intronic_non-coding|ENSMUST00000027250|ENSMUSG00000037138|protein_coding|AF4/FMR2 family, member 3 Gene [Source:MGI (curated);Acc:Aff3-002] ## Opposite_strand|Boundary_non-coding|ENSMUST00000095027|ENSMUSG00000037138|protein_coding|AF4/FMR2 family, member 3 Gene [Source:MGI (curated);Acc:Aff3-002] |
sblock12672_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12672_novel 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12672_novel 3arm | 0 | 0 | 0 | 0 | 0.500 | 0 | 0 | 0.500 | 0.500 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12672_novel 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12672_novel 3arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0.000 | 0.000 | 0 |
sblock12672 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.45/0.52 | 20/22/1.00 | 0.0 0.0 | 0.0 0.7 | 2 3 | 0 0 | 1 3 | 0 0 | 22 20 | 6 8 | 5arm 3arm | 2 2 | nd nd | 0.14 0.10 | 1 2 | 5 | 4 | 2 | 1 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------ACCCAGG--------------------------------- | 3 | novel | |||
| seed | -----------------------GAUGUUC------------------------------------------------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------AACCCAGGTTTGGAGTATCGG-------------------- | 21 | - | - | 1 | 1 | |
| ----------------------AGATGTTCCATCCATGGGTTTG----------------------------------------------------------- | 22 | 2 | - | - | - | |
| --------------------------------------------------------------AACCCAGGTTTGGAGTATCG--------------------- | 20 | - | 1 | - | - | |
| rat | GCTATGAGGTTAGTAGTGCTCCAGATGTTCCATCCATGGGTTTGGTCAGTAGCCACAGAATAAACCCAGGTTTGGAGTATCGGCAGCATTTGCTTCTTCGTGG | |||||
| mouse | ----------------------AGATGTTCCACCCATGGGTTTGGTCAGTAGCCACAGAGTAAACCCAAGTTTGGAGTATCG--------------------- | |||||
| ********** ************************** ******** ************* | ||||||
| rat | .((((((((..(((((((((((.(((((((((.((.((((((((.((.((....)).)).))))))))))..))))))))))).)))))).))).)))))))) | 1.000 -42.50 | ||||
| mouse | .(((((((((....((((((((.((.((....)).)).))))))))....))))))))). | 1.000 -22.10 | ||||
| rat | chromosome:X:71865181:71865283:-1 | intergenic |
| mouse | chromosome:5:24794877:24795019:-1 | Same_strand|Exonic_coding|ENSMUST00000088250|ENSMUSG00000038056|protein_coding|myeloid/lymphoid or mixed-lineage leukemia 3 Gene [Source:MGI Symbol;Acc:MGI:2444959] |
sblock1792_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock1792_novel 5arm | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock1792_novel 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock1792_novel 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock1792_novel 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock1792 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.61/0.64 | 18/22/0.80 | 0.2 0.0 | 1.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 12 10 | 0 2 | 5arm 3arm | 1 1 | nd nd | 0.11 0.27 | 2 4 | 5 | 2 | 2 | 2 |
| Member of family novel99 (seed GGAGGAC): sblock1792_novel, block914183_cand |
| reads | miRBase family seed | |||
| seed | --------------GAGGACA------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------------------------CUGAGUC------------------------ | 1 | novel | |
| seed | -------------GGAGGAC-------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------GGAGGACAGCAGACTCAGGTC------------------------------------------ | 21 | - | 3 | |
| --------------------------------------------CCTGAGTCTGCGCTCCTCTCCA---------- | 22 | 1 | - | |
| ------------CGGAGGACAGCAGACTCA---------------------------------------------- | 18 | 1 | - | |
| rat | cagtcccttcctCGGAGGACAGCAGACTCAGGTCgaaatcgggaCCTGAGTCTGCGCTCCTCTCCAgccctagact | |||
| **************************************************************************** | ||||
| -------------------------------------------------------------------------------------- | ENSRNOT00000046359 ENSRNOG00000020961 LOC687564 | |||
| rat | .((((........((((((..(((((((((((((........)))))))))))))..)))))).........)))) | 1.000 -37.63 | ||
| rat | chromosome:1:85634969:85635044:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000046359|ENSRNOG00000020961 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000028477|ENSRNOG00000020961 ## ENSRNOG00000020961|protein_coding|LOC687564| |
sblock2275_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2275_novel 5arm | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 1 |
| sblock2275_novel 3arm | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2275_novel 5arm | 0.000 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 |
| sblock2275_novel 3arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
sblock2275 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.57 | 18/23/0.80 | 0.0 0.0 | 3.5 0.0 | 4 1 | 0 0 | 4 1 | 0 0 | 21 22 | 3 7 | 5arm 3arm | 1 1 | nd nd | 0.27 0.33 | 3 3 | 5 | 4 | 3 | 1 |
| Member of family miR-22* (seed GUUCUUC): sblock2275_novel, block1531406_cand |
| reads | miRBase family seed | |||||
| seed | ----------------------GUUCUUC--------------------------------------------------------------------------- | 4 | miR-22* | |||
| seed | ------------------------------------------------------------GU-UGGGC------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T3S2 | T4S2 | T5S2 | |||
| ---------------------TGTTCTTCCCGTGCAGAA-GCAGC----------------------------------------------------------- | 23 | - | - | 1 | 1 | |
| ---------------------TGTTCTTCCCGTGCAGAA----------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ---------------------TGTTCTTCCCGTGCAGAA-GCAG------------------------------------------------------------ | 22 | - | 1 | - | - | |
| -----------------------------------------------------------GGT-TGGGCCCTGG-AAGAACTA---------------------- | 21 | - | 1 | - | - | |
| rat | TGCACCAAACACCAGTGGGCTTGTTCTTCCCGTGCAGAA-GCAGCAGAGATATCAGGCTGGT-TGGGCCCTGG-AAGAACTAGCCACTTGGTGTGACTGGGCAG | |||||
| human | ---------------------TGCTCTTCCA---------GGAGCAAGACCAACGTGTGGGT-TGGGCCCTGGAAAGAAGTC---------------------- | |||||
| mouse | ---------------------TGTTCTTCCCAACTAGAAGGCAGCAGAGATATCAGGCTGGCATGGGCCCTGG-AAGAAAT----------------------- | |||||
| ** ****** * **** * * * ** ********** ***** * | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++ ++++++++++ +++++++++++++++++++++++++++++++++++ | ENSRNOT00000004416 ENSRNOG00000003234 Mgrn1 | |||||
| ++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++ ++++++++++ +++++++++++++++++++++++++++++++++++ | ENSRNOT00000040619 ENSRNOG00000003234 Mgrn1 | |||||
| rat | (((.(((.(((((((..((((.((((((((...((..(( .((((.((....))..)))).) )..))...)) )))))).))))..)))))))...)))))). | 1.000 -47.20 | ||||
| human | .((((((((( ((.((..((((........))) )..))))))))).)).)). | 1.000 -20.90 | ||||
| mouse | ..(((((((...(((....(((((.((....))..))).)).))).....)) ))))).. | 0.840 -15.10 | ||||
| rat | chromosome:10:10778320:10778420:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000037009|ENSRNOG00000003234 ## Same_strand|Intronic_coding|ENSRNOT00000040619|ENSRNOG00000003234 ## ENSRNOG00000003234|protein_coding|Mgrn1|Probable E3 ubiquitin-protein ligase MGRN1 (EC 6.3.2.-) (Mahogunin RING finger protein 1). [Source:UniProtKB/Swiss-Prot;Acc:Q5XIQ4] |
| human | chromosome:14:99973231:99973371:-1 | Opposite_strand|Intronic_coding|ENST00000335290|ENSG00000176473|protein_coding|WD repeat-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q64LD2] |
| mouse | chromosome:16:4913375:4913515:1 | Same_strand|Intronic_coding|ENSMUST00000070658|ENSMUSG00000022517|protein_coding|mahogunin, ring finger 1 Gene [Source:MGI Symbol;Acc:MGI:2447670] |
sblock5924_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5924_novel 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock5924_novel 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5924_novel 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock5924_novel 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock5924 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.48/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 23 | 2 5 | 5arm 3arm | 1 1 | nd nd | 0.20 0.19 | 2 3 | 2 | 2 | 2 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------GGGAAAU------------------------------------ | 1 | novel | |
| seed | -----------------------------------UCCCUCA---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------ATCCCTCAAGCTTTCCCCAG---------------------------------------------------------- | 20 | - | 1 | |
| --------------------------------------------------------------------TGGGAAATGCAAAGAGGGAAG----------------------- | 21 | 1 | - | |
| rat | gttccaaacagcttcactattatctgtcttctgtATCCCTCAAGCTTTCCCCAGtgaacacagcacccTGGGAAATGCAAAGAGGGAAGacagagaggagcatggggtggga | |||
| **************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000025424 ENSRNOG00000018801 Klhdc4 | |||
| rat | .(((((..(((((((.......(((((((......((((((..((((((((..(((.......)))...)))))).))...)))))))))))))..))))).))...))))) | 0.990 -40.30 | ||
| rat | chromosome:19:52056159:52056270:1 | Opposite_strand|Intronic_coding|ENSRNOT00000025424|ENSRNOG00000018801 ## ENSRNOG00000018801|protein_coding|Klhdc4|kelch domain containing 4 Gene [Source:MGI Symbol;Acc:MGI:2384569] |
sblock9904_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9904_novel 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9904_novel 3arm | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9904_novel 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9904_novel 3arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.000 |
sblock9904 [novel_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.45/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 5 | 0 0 | 1 3 | 0 0 | 29 30 | -1 0 | 5arm_loop 3arm | 1 1 | nd nd | 0.15 0.18 | 2 2 | 6 | 4 | 1 | 2 |
| reads | miRBase family seed | |||||
| seed | ----------------------------------------------------------------CAGCUUG-------------------------------------------- | 5 | novel | |||
| seed | ------------------------------CUGUGUU------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------CCAGCTTGAGTTAACACAGTGA------------------------------ | 22 | - | 3 | 1 | 1 | |
| -----------------------------ACTGTGTTGACCAACCTGGA------------------------------------------------------------------ | 20 | 1 | - | - | - | |
| rat | TCAAGAATTTATGAGGTTTCTACCACCCCACTGTGTTGACCAACCTGGAATCACTTTAATTTCCCAGCTTGAGTTAACACAGTGAAGGTGGCCGGAAATTGACTTCAGATCTGGA | |||||
| mouse | --------------GGTTTCTGCCATCCCGCTGTGTCGACCAACCTGGAGTCACTTTAATTTCCCAGCTTGAGTTAACACAGTGAAGATAGCTGGAAATT--------------- | |||||
| ******* *** *** ****** ************ ************************************* * ** ******* | ||||||
| rat | ((.(((.....((((((((((.(((((.(((((((((((((((.((((...............)))).))).))))))))))))..)))))..)))....)))))))..))).)) | 0.990 -41.86 | ||||
| mouse | .((((((((.(((.((((((((..(((((.((((...............)))).))).))..))))))))..))).)).)))))). | 0.999 -29.56 | ||||
| rat | chromosome:6:6148141:6148255:-1 | intergenic |
| mouse | chromosome:17:83228957:83229042:-1 | intergenic |
sblock508_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock508_novel 5arm | 3.333 | 8.333 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock508_novel 3arm | 109 | 57 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock508_novel 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock508_novel 3arm | 0.004 | 0.002 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock508 [MANUAL_level1]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.44/0.67 | 18/22/0.42 | 0.3 0.0 0.0 | 0.7 1.1 0.8 | 3 10 155 | 0 0 0 | 2 2 2 | 0 0 0 | 5 24 29 | 24 3 5 | 5arm 5arm 3arm | 1 3 3 | nd nd nd | 0.16 0.20 0.16 | 2 2 1 | 179 | 2 | 3 | 3 |
| Member of family novel236 (seed CAGCUUC): sblock508_novel, block228766_cand |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------AGGCUAG------------------------------------------- | 166 | novel | |
| seed | -------------------------CAGCUUC--------------------------------------------------------------------------------- | 10 | novel | |
| seed | ------GAGCGAU---------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -------AGCGAUC--------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| --------------------------------------------------------------TAGGCTAGAAAGAGGTTGG-------------------------------- | 19 | 45 | 18 | |
| --------------------------------------------------------------TAGGCTAGAAAGAGGTTGGG------------------------------- | 20 | 19 | 18 | |
| --------------------------------------------------------------TAGGCTAGAAAGAGGTTG--------------------------------- | 18 | 22 | 14 | |
| --------------------------------------------------------------TAGGCTAGAAAGAGGTTGGGGA----------------------------- | 22 | 19 | 5 | |
| --------------------------------------------------------------TAGGCTAGAAAGAGGTTGGGG------------------------------ | 21 | 4 | 2 | |
| ------------------------CCAGCTTCCTTCCAGCCCTT--------------------------------------------------------------------- | 20 | 1 | 2 | |
| ------------------------CCAGCTTCCTTCCAGCCCTTG-------------------------------------------------------------------- | 21 | - | 3 | |
| ------------------------CCAGCTTCCTTCCAGCCCTTGA------------------------------------------------------------------- | 22 | 1 | 1 | |
| ------------------------CCAGCTTCCTTCCAGCCC----------------------------------------------------------------------- | 18 | 1 | 1 | |
| -----TGAGCGATCGATCCCCAT------------------------------------------------------------------------------------------ | 18 | - | 2 | |
| ------GAGCGATCGATCCCCATCC---------------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | CCTGCTGAGCGATCGATCCCCATCCCAGCTTCCTTCCAGCCCTTGATGTTTCAGTATGCACATAGGCTAGAAAGAGGTTGGGGATGGGGAAAGATGAGAGCATCGGATGCAGG | |||
| mouse | ----------------------TCCCAGCTTCCTTCCAGCCCTTGATGTTTTAGTACGCACATAGGCTAGAGAGAGGTTGGGGA----------------------------- | |||
| ***************************** **** ************** ************ | ||||
| rat | ((((((((((.(((..((((((((((((((((.(((.((((..((.(((........)))))..)))).))).))))))))).)))))))..)))....)).)))...))))) | 0.910 -52.70 | ||
| mouse | ((((((((((.(((.((((..((.(((........)))))..)))).))).)))))))))). | 1.000 -27.10 | ||
| rat | chromosome:1:65425840:65425952:-1 | intergenic |
| mouse | chromosome:7:6756267:6756419:1 | Same_strand|Intronic_non-coding|ENSMUST00000054055|ENSMUSG00000051527|protein_coding|ubiquitin specific peptidase 29 Gene [Source:MGI Symbol;Acc:MGI:1888998] |
sblock646_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock646_novel 5arm | 8.286 | 4.857 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock646_novel 3arm | 160.400 | 210.900 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock646_novel 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock646_novel 3arm | 0.005 | 0.009 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
sblock646 (miRNA) [MANUAL_level1]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.43/0.50 | 18/23/0.67 | 0.0 0.0 | 1.3 0.9 | 58 249 | 0 0 | 2 4 | 0 0 | 12 23 | 6 7 | 5arm 3arm | 7 7 | nd nd | 0.17 0.09 | 2 1 | 477 | 4 | 1 | 2 |
| Member of family miR-410 (seed AUAUAAC): rno-mir-410, sblock646_novel |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------AUAUAAC------------------------------------- | 365 | miR-410 | |||
| seed | -------------GUCAGGC------------------------------------------------------------------------------ | 79 | novel | |||
| seed | ---------------------------------------------------------UAACCAA---------------------------------- | 12 | novel | |||
| seed | ---------------CAGGCUG---------------------------------------------------------------------------- | 12 | novel | |||
| seed | ---------------------------------------------------UGGAUAU---------------------------------------- | 3 | miR-376b | |||
| seed | ----------------------------------------------------GGAUAUA--------------------------------------- | 2 | novel | |||
| seed | -----------------GGCUGCU-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------UAUAACC------------------------------------ | 1 | novel | |||
| seed | -----------------------------------------------------GAUAUAA-------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------------AUAACCA----------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| -----------------------------------------------------GATATAACCAAAGCCCGACTGT----------------------- | 22 | 40 | 122 | 1 | - | |
| -----------------------------------------------------GATATAACCAAAGCCCGAC-------------------------- | 19 | 44 | 32 | - | 1 | |
| -----------------------------------------------------GATATAACCAAAGCCCGACT------------------------- | 20 | 43 | 13 | - | - | |
| -----------------------------------------------------GATATAACCAAAGCCCGACTG------------------------ | 21 | 26 | 26 | - | - | |
| ------------AGTCAGGCTGCTGGTTATA------------------------------------------------------------------- | 19 | 17 | 15 | - | - | |
| ------------AGTCAGGCTGCTGGTTAT-------------------------------------------------------------------- | 18 | 17 | 3 | - | - | |
| ------------AGTCAGGCTGCTGGTTATATTCC--------------------------------------------------------------- | 23 | 9 | 5 | - | - | |
| --------------------------------------------------------ATAACCAAAGCCCGACTGT----------------------- | 19 | 1 | 8 | - | - | |
| -----------------------------------------------------GATATAACCAAAGCCCGA--------------------------- | 18 | 4 | 5 | - | - | |
| -----------------------------------------------------GATATAACCAAAGCCCGACTGTT---------------------- | 23 | - | 7 | 1 | - | |
| ------------AGTCAGGCTGCTGGTTATATTC---------------------------------------------------------------- | 22 | 3 | 3 | - | - | |
| ------------AGTCAGGCTGCTGGTTATAT------------------------------------------------------------------ | 20 | 4 | 2 | - | - | |
| --------------TCAGGCTGCTGGTTATATTC---------------------------------------------------------------- | 20 | 2 | 2 | - | - | |
| --------------TCAGGCTGCTGGTTATAT------------------------------------------------------------------ | 18 | 3 | 1 | - | - | |
| --------------TCAGGCTGCTGGTTATATTCC--------------------------------------------------------------- | 21 | 2 | 2 | - | - | |
| --------------------------------------------------------ATAACCAAAGCCCGACTG------------------------ | 18 | 2 | 1 | - | - | |
| --------------------------------------------------CTGGATATAACCAAAGCCC----------------------------- | 19 | 1 | 1 | - | - | |
| ------------------------------------------------------ATATAACCAAAGCCCGACTGT----------------------- | 21 | - | 1 | - | - | |
| -------------------------------------------------------TATAACCAAAGCCCGACTGT----------------------- | 20 | - | 1 | - | - | |
| ---------------------------------------------------TGGATATAACCAAAGCCC----------------------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------------GGATATAACCAAAGCCCGACTGT----------------------- | 23 | - | 1 | - | - | |
| ------------AGTCAGGCTGCTGGTTATATT----------------------------------------------------------------- | 21 | - | 1 | - | - | |
| ---------------------------------------------------TGGATATAACCAAAGCCCGAC-------------------------- | 21 | 1 | - | - | - | |
| ----------------AGGCTGCTGGTTATATTCC--------------------------------------------------------------- | 19 | 1 | - | - | - | |
| --------------------------------------------------CTGGATATAACCAAAGCCCGAC-------------------------- | 22 | 1 | - | - | - | |
| rat | AGAGACCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTCTCTGGTCCTGGATATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGTGTCT | |||||
| mouse | ----------TCAGTCAGGCTTCTGGCTATATTCCAGGACTTACCTGGTCCTGGATATAACCAAAGCCTGACTAT----------------------- | |||||
| *********** **** *************** ************************ **** * | ||||||
| rat | .......(((.(((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))))..................... | 0.450 -40.80 | ||||
| mouse | ..((((((((((.(((.((((.(((((((((.....))))))))))))).))))))))))))).. | 1.000 -38.60 | ||||
| rat | chromosome:1:115319456:115319553:-1 | intergenic |
| mouse | chromosome:7:68880382:68880519:-1 | Same_strand|Boundary_non-coding|ENSMUST00000104677|ENSMUSG00000077869|miRNA| |
sblock647_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock647_novel 5arm | 0.250 | 1.667 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock647_novel 3arm | 74.667 | 85.537 | 0 | 0.111 | 0.200 | 0 | 0 | 0 | 0 | 0.111 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock647_novel 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock647_novel 3arm | 0.002 | 0.004 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0.000 |
sblock647 [MANUAL_level1]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.40/0.53 | 18/23/0.65 | 0.0 0.5 0.0 | 1.0 1.0 1.4 | 6 2 882 | 0 0 0 | 2 1 5 | 0 0 0 | 11 18 9 | 6 -1 7 | 5arm 3arm 3arm | 4 8 9 | nd nd nd | 0.17 0.05 0.10 | 2 1 1 | 1089 | 5 | 1 | 2 |
| Member of family novel15 (seed GUAUAAC): sblock647_novel, sblock650_novel, sblock651_novel, sblock652_novel, sblock649_cand |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------GUAUAAC----------------------- | 1066 | novel | ||||
| seed | --------------------------------------------------------UAACCAA-------------------- | 8 | novel | ||||
| seed | ------------------------------------------------------UAUAACC---------------------- | 6 | novel | ||||
| seed | ------------GUCAGGC---------------------------------------------------------------- | 6 | novel | ||||
| seed | ---------------------------------------------------GGGUAUA------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------GUCCUGG------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------GGUCCUG------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T5S2 | |||
| ----------------------------------------------------GGTATAACCAAAGCCCGACTGA--------- | 22 | 139 | 288 | - | 1 | - | |
| ----------------------------------------------------GGTATAACCAAAGCCCGAC------------ | 19 | 193 | 131 | 1 | - | 1 | |
| ----------------------------------------------------GGTATAACCAAAGCCCGACT----------- | 20 | 131 | 42 | - | - | - | |
| ----------------------------------------------------GGTATAACCAAAGCCCGACTG---------- | 21 | 59 | 27 | - | - | - | |
| ----------------------------------------------------GGTATAACCAAAGCCCGA------------- | 18 | 17 | 19 | - | - | - | |
| ----------------------------------------------------GGTATAACCAAAGCCCGACTGAA-------- | 23 | 7 | 10 | - | - | - | |
| -------------------------------------------------------ATAACCAAAGCCCGACTGA--------- | 19 | 1 | 4 | - | - | - | |
| -----------------------------------------------------GTATAACCAAAGCCCGAC------------ | 18 | 2 | 1 | - | - | - | |
| -------------------------------------------------------ATAACCAAAGCCCGACTG---------- | 18 | 2 | 1 | - | - | - | |
| -----------AGTCAGGCTACTGGTTATA----------------------------------------------------- | 19 | - | 3 | - | - | - | |
| -----------------------------------------------------GTATAACCAAAGCCCGACTGA--------- | 21 | 2 | 1 | - | - | - | |
| --------------------------------------------TGGTCCTGGGTATAACCAA-------------------- | 19 | - | 1 | - | - | - | |
| -----------AGTCAGGCTACTGGTTATAT---------------------------------------------------- | 20 | - | 1 | - | - | - | |
| -----------AGTCAGGCTACTGGTTATATTCC------------------------------------------------- | 23 | - | 1 | - | - | - | |
| --------------------------------------------------TGGGTATAACCAAAGCCCGAC------------ | 21 | - | 1 | - | - | - | |
| -----------AGTCAGGCTACTGGTTAT------------------------------------------------------ | 18 | 1 | - | - | - | - | |
| ---------------------------------------------GGTCCTGGGTATAACCAAAG------------------ | 20 | - | 1 | - | - | - | |
| rat | GAGATCTGATCAGTCAGGCTACTGGTTATATTCCAGGACTAATCTGGTCCTGGGTATAACCAAAGCCCGACTGAATGGTGTTA | ||||||
| mouse | ---------TCAGTCAGGCTTCTGGCTATATTCCAGGACATACCTGGTCCTGGGTATAACCAAAGCCCGACTGT--------- | ||||||
| *********** **** ************* * ****************************** | |||||||
| rat | ((.(((...((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))..))).)). | 1.000 -42.10 | |||||
| mouse | .(((((.(((((.(((.((((.((((((((.......)))))))))))).)))))))).))))). | 1.000 -33.90 | |||||
| rat | chromosome:1:115329931:115330013:-1 | intergenic |
| mouse | chromosome:7:68884207:68884329:-1 | intergenic |
sblock650_novel
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock650_novel 5arm | 8.286 | 4.857 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock650_novel 3arm | 51.817 | 58.594 | 0 | 0.111 | 0 | 0 | 0 | 0.250 | 0 | 0.111 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock650_novel 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock650_novel 3arm | 0.002 | 0.003 | 0 | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0.000 |
sblock650 [MANUAL_level1]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.43/0.53 | 18/23/0.51 | 0.0 0.0 | 1.3 1.0 | 58 638 | 0 0 | 2 5 | 0 0 | 17 27 | 5 6 | 5arm 3arm | 7 9 | nd nd | 0.16 0.10 | 2 1 | 886 | 5 | 2 | 2 |
| Member of family novel15 (seed GUAUAAC): sblock647_novel, sblock650_novel, sblock651_novel, sblock652_novel, sblock649_cand |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------------GUAUAAC----------------------------------------- | 777 | novel | ||||
| seed | ------------------GUCAGGC---------------------------------------------------------------------------------- | 79 | novel | ||||
| seed | --------------------------------------------------------------UAACCAA-------------------------------------- | 12 | novel | ||||
| seed | --------------------CAGGCUG-------------------------------------------------------------------------------- | 12 | novel | ||||
| seed | ------------------------------------------------------------UAUAACC---------------------------------------- | 4 | novel | ||||
| seed | -------------------------------------------------------------AUAACCA--------------------------------------- | 1 | novel | ||||
| seed | ----------------------GGCUGCU------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S2 | |||
| ----------------------------------------------------------GGTATAACCAAAGCCCGAC------------------------------ | 19 | 193 | 131 | 1 | - | 1 | |
| ----------------------------------------------------------GGTATAACCAAAGCCCGACT----------------------------- | 20 | 131 | 42 | - | - | - | |
| ----------------------------------------------------------GGTATAACCAAAGCCCGACTGT--------------------------- | 22 | 27 | 124 | - | 1 | - | |
| ----------------------------------------------------------GGTATAACCAAAGCCCGACTG---------------------------- | 21 | 59 | 27 | - | - | - | |
| ----------------------------------------------------------GGTATAACCAAAGCCCGA------------------------------- | 18 | 17 | 19 | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTATA----------------------------------------------------------------------- | 19 | 17 | 15 | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTAT------------------------------------------------------------------------ | 18 | 17 | 3 | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTATATTCC------------------------------------------------------------------- | 23 | 9 | 5 | - | - | - | |
| -------------------------------------------------------------ATAACCAAAGCCCGACTGT--------------------------- | 19 | 1 | 8 | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTATAT---------------------------------------------------------------------- | 20 | 4 | 2 | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTATATTC-------------------------------------------------------------------- | 22 | 3 | 3 | - | - | - | |
| ----------------------------------------------------------GGTATAACCAAAGCCCGACTGTT-------------------------- | 23 | - | 4 | - | - | - | |
| -------------------TCAGGCTGCTGGTTATATTCC------------------------------------------------------------------- | 21 | 2 | 2 | - | - | - | |
| -------------------TCAGGCTGCTGGTTATATTC-------------------------------------------------------------------- | 20 | 2 | 2 | - | - | - | |
| -------------------TCAGGCTGCTGGTTATAT---------------------------------------------------------------------- | 18 | 3 | 1 | - | - | - | |
| -----------------------------------------------------------GTATAACCAAAGCCCGAC------------------------------ | 18 | 2 | 1 | - | - | - | |
| -------------------------------------------------------------ATAACCAAAGCCCGACTG---------------------------- | 18 | 2 | 1 | - | - | - | |
| ---------------------AGGCTGCTGGTTATATTCC------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| -----------------AGTCAGGCTGCTGGTTATATT--------------------------------------------------------------------- | 21 | - | 1 | - | - | - | |
| ------------------------------------------------------------TATAACCAAAGCCCGACTGT--------------------------- | 20 | - | 1 | - | - | - | |
| -----------------------------------------------------------GTATAACCAAAGCCCGACTGT--------------------------- | 21 | - | 1 | - | - | - | |
| rat | TGGGGAGAGATCTGATCAGTCAGGCTGCTGGTTATATTCCAGGACTTATCT-GTCCTAGGTATAACCAAAGCCCGACTGTTAAATAAAAGTAAGAATGAGTCTGCAA | ||||||
| mouse | ---------------TCAGTCAGGCTTCTGGT--TATTGCAGGACTCATCTGGTCCTGGGTATAACT-AAGCCCGACTGT--------------------------- | ||||||
| *********** ***** **** ******* **** ***** ******** ************ | |||||||
| rat | ((.(((....(((...(((((.((((..((((((((((..(((((...... ))))).)))))))))).)))).))))).............))).....))).)). | 0.450 -35.79 | |||||
| mouse | .(((((.((((..(((( (((..(((((((.....)))))))...)))))) ))))).))))). | 1.000 -29.00 | |||||
| rat | chromosome:1:115346737:115346842:-1 | intergenic |
| mouse | chromosome:7:68882358:68882503:-1 | intergenic |
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