========== block875685 (miRNA) [miRNAunknown_lenNOK_cloningOK_randfoldOK] ========== #randfold block875685: 0.001 randfold mouseZ25p2_block875685: 0.077 #forester mouseZ25p2_block875685: 0.633219 #identity: 87.14 block875685 GATATAGCCAAAGCCCGACTGA #rat_gr519219_libT1S2 22 7 block875685 GATATAGCCAAAGCCCGACT #rat_gr519217_libT1S1 20 3 block875685 GATATAGCCAAAGCCCGAC #rat_gr519216_libT1S1 19 3 block875685 GATATAGCCAAAGCCCGACTG #rat_gr519218_libT1S2 21 1 block875685 GATATAGCCAAAGCCCGAC #rat_gr519216_libT1S2 19 1 block875685 GATATAGCCAAAGCCCGA #rat_gr519215_libT1S2 18 1 block875685 GAGATCTGATCAGTCAGGCTACTGGCTATATTCCAGGACCTATCTGGTCCTGGATATAGCCAAAGCCCGACTGAATGGTGTT------------------ mouseZ25p2 ---------TCAGTCAGGCTGCTGGCTA---TCCATGTCTTGTCTAGTCCTGCATATAGCCAAAGCCAGACTGAATGGTGATAAAGATGTGGGAGAGTAC *********** ******* **** * * * *** ****** ************** ************ * block875685 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000063156 ENSRNOG00000041403 block875685 ((.(((...((((((.((((..((((((((.(((((((((.....))))))))))))))))).)))).))))))..))).)) 1.000 -47.10 # mouseZ25p2 ((((((.((((..(((((( (..((((.............))))))))))).)))).)))))).......................... 0.843 -25.52 # #block875685 chromosome:1:115321251:115321332:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063156|ENSRNOG00000041403 ## ENSRNOG00000041403|miRNA|| #mouseZ25p2 chromosome:7:68839337:68839424:-1 intergenic ========== block969943 (miRNA) [miRNAunknown_randfoldOK] ========== #randfold block969943: 0.001 #forester #identity: 0.00 block969943 AGTGTCACACAGTTTGAGTATC #rat_gr201469_libT2S2 22 3 block969943 gcagttttctccatcggtaacactgcaaactttgcggcacttcttccaaaagaaacaaAGTGTCACACAGTTTGAGTATCacaggtggaaacacttgca *************************************************************************************************** block969943 .............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.............. #ENSRNOT00000062153 ENSRNOG00000040400 block969943 (((((.((.((((((.((...(((.((((((.((.(((((((.(((.....)))...))))))).)).)))))))))...)).)))))))).))).)). 0.980 -30.90 # #block969943 chromosome:1:64273316:64273414:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000062153|ENSRNOG00000040400 ## ENSRNOG00000040400|miRNA|| ========== block2225001 (miRNA) [miRNAunknown_cloningOK_randfoldOK_bulgeHIGH] ========== #randfold block2225001: 0.001 randfold mouse59p3_block2225001: 0.001 #forester mouse59p3_block2225001: 0.372483 #identity: 62.75 block2225001 GCAGCCTCAGTGTTTTCAGGTG #rat_gr534123_libT4S2 22 3 block2225001 GCAGCCTCAGTGTTTTCAGGTG #rat_gr534123_libT5S1 22 2 block2225001 GCAGCCTCAGTGTTTTCAGG #rat_gr534122_libT1S1 20 1 block2225001 GCAGCCTCAGTGTTTTCAGGTG #rat_gr534123_libT3S1 22 1 block2225001 GCAGCCTCAGTGTTTTCAGGTG #rat_gr534123_libT3S2 22 1 block2225001 CAGCCTCAGTGTTTTCAGGTG #rat_gr294348_libT1S2 21 1 block2225001 CAGCCTCAGTGTTTTCAGGTGA #rat_gr294349_libT4S1 22 1 block2225001 GGAAGCTGATGTTCAGTGGGACGCAGCCTCAGTGTTTTCAGGTGATTTGAATGAACACCTGATAAAACTGAGGTATAGTACCACAGAACTTGGAATGCTCCC mouse59p3 ----------------------TCAGCCTCAGTGTTTTCCCTATTTCCACACGGGAACCTG----AGCTGAGGCTCA------------------------- **************** * * * ***** * ****** * block2225001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014703 ENSRNOG00000010865 Cohh1_predicted block2225001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000033021 ENSRNOG00000010865 Cohh1_predicted block2225001 ..............<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................... #ENSRNOT00000063101 ENSRNOG00000041348 block2225001 ((.(((....((((.((((.((...((((((((....(((((((.(((....))))))))))....))))))))...)).)))).)))).......))))). 0.990 -41.70 # mouse59p3 ..(((((((((...(((((...........))))).... .))))))))).. 1.000 -21.00 # #block2225001 chromosome:7:71189228:71189329:1 Opposite_strand|Exonic_non-coding|ENSRNOT00000063101|ENSRNOG00000041348 ## Same_strand|Intronic_coding|ENSRNOT00000033021|ENSRNOG00000010865 ## Same_strand|Boundary_non-coding|ENSRNOT00000014768|ENSRNOG00000010865 ## Same_strand|Intronic_non-coding|ENSRNOT00000014703|ENSRNOG00000010865 ## ENSRNOG00000010865|protein_coding|Cohh1_predicted| ## ENSRNOG00000041348|miRNA|| #mouse59p3 chromosome:11:58454339:58454480:-1 Opposite_strand|Boundary_coding|ENSMUST00000075084|ENSMUSG00000037124|protein_coding|tripartite motif-containing 58 Gene [Source:MGI (curated);Acc:Trim58-001] ========== block1705997 (miRNA) [miRNAunknown_cloningHIGH_Multihit_randfoldOK] ========== #randfold block1705997: 0.001 #forester #identity: 0.00 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT3S1 24 29 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT4S2 24 21 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT3S2 24 18 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT4S1 24 18 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT3S1 22 17 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT2S2 24 13 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT3S2 22 12 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT4S1 22 11 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT4S1 23 11 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT2S1 24 11 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT4S2 22 10 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT2S2 22 8 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT4S2 23 8 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT1S1 22 7 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT3S1 23 7 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT5S2 24 7 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT2S1 22 5 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT2S2 23 5 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT5S1 23 5 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT1S2 24 5 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT5S1 22 4 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT3S2 23 4 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT1S1 24 4 block1705997 TGAGTGTGTGTGTGTGAGTGTGTG #rat_gr953200_libT5S1 24 4 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT1S2 22 3 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT2S1 23 3 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT2S1 25 2 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT3S1 25 2 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT5S1 25 2 block1705997 TGAGTGTGTGTGTGTGAGTGTG #rat_gr953176_libT5S2 22 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT1S1 23 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGT #rat_gr953192_libT1S2 23 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT1S1 25 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT2S2 25 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT3S2 25 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGT #rat_gr953202_libT5S2 25 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGTG #rat_gr953204_libT1S2 26 1 block1705997 TGAGTGTGTGTGTGTGAGTGTGTGTG #rat_gr953204_libT2S1 26 1 block1705997 GAGTGTGTGTGTGTGAGTGTGTG #rat_gr517512_libT2S1 23 1 block1705997 GAGTGTGTGTGTGTGAGTGTGTG #rat_gr517512_libT3S1 23 1 block1705997 GAGTGTGTGTGTGTGAGTGTGTGT #rat_gr517514_libT4S1 24 1 block1705997 agtttgtgtgtgtgTGAGTGTGTGTGTGTGAGTGTGTGtgagtgtgagtgtgagtgtgtgtgtgtgtgtacactaatgggtacactcaccacacacaggct ***************************************************************************************************** block1705997 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000020729 ENSRNOG00000027869 LOC312831 block1705997 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000020512 ENSRNOG00000027869 LOC312831 block1705997 .......................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.......... #ENSRNOT00000063289 ENSRNOG00000041536 block1705997 ((((((((((((.(((((((((..(((...((((((..((........................))..)))))).)))..))))))))))))))))))))) 1.000 -38.76 # #block1705997 chromosome:4:180451416:180451516:1 Opposite_strand|Intronic_coding|ENSRNOT00000020512|ENSRNOG00000027869 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000055542|ENSRNOG00000027869 ## Same_strand|Boundary_non-coding|ENSRNOT00000063289|ENSRNOG00000041536 ## ENSRNOG00000041536|miRNA|| ## ENSRNOG00000027869|protein_coding|LOC312831|Sry-related transcription factor Sox5 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q91WY4] ## {Repeats: trf 30 56 0 class=trf,dust 180451365 180451391 0 class=dust,(TG)n 114 140 1 class=Simple_repeat,(TG)n 2 169 1 class=Simple_repeat} ========== sblock5204 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock5204: 0.001 #forester #identity: 0.00 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT2S1 22 16 sblock5204 CATATACATGCACACATACAC #rat_gr308196_libT2S1 21 6 sblock5204 ATATACATGCACACATACACA #rat_gr211593_libT2S1 21 5 sblock5204 ATATACATGCACACATACA #rat_gr211587_libT2S2 19 4 sblock5204 TATACATGCACACATACACAC #rat_gr791503_libT2S2 21 3 sblock5204 ATATACATGCACACATACACACAC #rat_gr211597_libT2S1 24 2 sblock5204 TATACATGCACACATACACAC #rat_gr791503_libT2S1 21 2 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT2S2 22 2 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT3S1 22 2 sblock5204 CATATACATGCACACATACACAC #rat_gr308199_libT2S1 23 2 sblock5204 CATATACATGCACACATACACAC #rat_gr308199_libT2S2 23 2 sblock5204 ATATACATGCACACATACACA #rat_gr211593_libT2S2 21 2 sblock5204 ATATACATGCACACATACAC #rat_gr211592_libT2S1 20 2 sblock5204 CATATACATGCACACATACAC #rat_gr308196_libT2S2 21 2 sblock5204 ATATACATGCACACATACACACAC #rat_gr211597_libT1S2 24 1 sblock5204 ATATACATGCACACATACACACAC #rat_gr211597_libT3S1 24 1 sblock5204 ATACATGCACACATACACAC #rat_gr208068_libT2S1 20 1 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT1S1 22 1 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT3S2 22 1 sblock5204 ATATACATGCACACATACACAC #rat_gr211596_libT4S1 22 1 sblock5204 ATATACATGCACACATACACA #rat_gr211593_libT3S1 21 1 sblock5204 CATATACATGCACACATACACA #rat_gr308197_libT3S1 22 1 sblock5204 CATATACATGCACACATACACA #rat_gr308197_libT4S2 22 1 sblock5204 ATATACATGCACACATACAC #rat_gr211592_libT2S2 20 1 sblock5204 CATATACATGCACACATACAC #rat_gr308196_libT1S2 21 1 sblock5204 ACATATACATGCACACATACAC #rat_gr83164_libT2S1 22 1 sblock5204 ACATATACATGCACACATACAC #rat_gr83164_libT2S2 22 1 sblock5204 ATATACATGCACACATACA #rat_gr211587_libT2S1 19 1 sblock5204 ATATACATGCACACATACA #rat_gr211587_libT3S2 19 1 sblock5204 ATATACATGCACACATACA #rat_gr211587_libT4S2 19 1 sblock5204 ATATACATGCACACATAC #rat_gr211586_libT2S1 18 1 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT2S1 24 124 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT2S2 22 89 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT2S1 22 86 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT3S1 22 75 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT2S1 18 75 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT2S2 24 68 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT2S2 18 65 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT3S2 22 55 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT3S1 18 49 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT3S1 24 46 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT2S1 23 33 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT2S1 23 31 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT3S2 24 29 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT2S1 21 24 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT2S2 23 22 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT2S2 23 21 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT3S1 21 21 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT3S1 23 19 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT4S2 24 17 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT3S2 23 17 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT4S2 22 17 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT2S1 19 17 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT1S1 24 16 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT3S2 18 16 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT3S1 23 15 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT2S2 21 15 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT5S2 22 14 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT2S1 20 13 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT3S2 23 12 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT3S2 21 12 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT4S1 24 10 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT4S1 22 10 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT2S2 20 10 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT2S2 19 10 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT1S1 22 9 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT3S1 20 9 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT5S1 24 8 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT5S1 22 8 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT4S2 23 7 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT3S2 20 7 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT3S1 19 7 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT4S1 18 7 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT5S1 18 7 sblock5204 ATGTGATGTGTGTATGTAC #rat_gr237625_libT2S2 19 7 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT1S2 23 6 sblock5204 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT1S2 22 6 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT5S1 21 6 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT1S2 18 6 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT1S2 24 5 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT1S1 21 5 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT4S2 21 5 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT3S2 19 5 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT4S1 19 5 sblock5204 ATGTGATGTGTGTATGTACA #rat_gr237626_libT2S2 20 5 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT4S2 18 5 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT5S2 18 5 sblock5204 ATGTGATGTGTGTATGTAC #rat_gr237625_libT2S1 19 5 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT1S1 23 4 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT4S2 23 4 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT5S2 21 4 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT3S2 22 4 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT2S1 21 4 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT2S2 21 4 sblock5204 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT5S2 24 3 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT5S1 23 3 sblock5204 ATGTGATGTGTGTATGTACATGTG #rat_gr237632_libT2S1 24 3 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT1S1 20 3 sblock5204 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT5S1 20 3 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT1S1 19 3 sblock5204 ATGTGATGTGTGTATGTACA #rat_gr237626_libT3S1 20 3 sblock5204 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT2S2 23 2 sblock5204 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT3S1 23 2 sblock5204 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT4S1 23 2 sblock5204 GTGATGTGTGTATGTACATGT #rat_gr645652_libT2S2 21 2 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT1S2 23 2 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT4S1 23 2 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT5S1 23 2 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT1S2 21 2 sblock5204 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT4S1 21 2 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT2S1 22 2 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT3S1 22 2 sblock5204 ATGTGATGTGTGTATGTACA #rat_gr237626_libT2S1 20 2 sblock5204 ATGTGATGTGTGTATGTA #rat_gr237624_libT3S1 18 2 sblock5204 ATGTGCATGTGTGTATGTGAT #rat_gr237723_libT2S2 21 2 sblock5204 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT2S1 25 1 sblock5204 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT2S2 25 1 sblock5204 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT3S1 25 1 sblock5204 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT4S1 25 1 sblock5204 GATGTGTGTATGTACATGTGT #rat_gr523537_libT3S1 21 1 sblock5204 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT2S1 23 1 sblock5204 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT5S1 23 1 sblock5204 ATGTGATGTGTGTATGTACATGTGT #rat_gr237633_libT3S1 25 1 sblock5204 ATGTGATGTGTGTATGTACATGTG #rat_gr237632_libT3S1 24 1 sblock5204 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT1S1 23 1 sblock5204 GTGATGTGTGTATGTACATG #rat_gr645651_libT2S2 20 1 sblock5204 GTGATGTGTGTATGTACATG #rat_gr645651_libT3S2 20 1 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT2S2 22 1 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT4S1 22 1 sblock5204 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT4S2 22 1 sblock5204 GTGATGTGTGTATGTACAT #rat_gr645650_libT2S1 19 1 sblock5204 GTGATGTGTGTATGTACAT #rat_gr645650_libT3S1 19 1 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT1S2 21 1 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT3S2 21 1 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT5S1 21 1 sblock5204 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT5S2 21 1 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT1S2 19 1 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT5S1 19 1 sblock5204 TGTGATGTGTGTATGTACA #rat_gr1084335_libT5S2 19 1 sblock5204 TATGTGATGTGTGTATGTACA #rat_gr798183_libT3S1 21 1 sblock5204 TGTGATGTGTGTATGTAC #rat_gr1084334_libT1S1 18 1 sblock5204 ATGTGATGTGTGTATGTAC #rat_gr237625_libT3S2 19 1 sblock5204 TATGTGATGTGTGTATGTAC #rat_gr798182_libT3S2 20 1 sblock5204 ATGTGATGTGTGTATGTA #rat_gr237624_libT4S1 18 1 sblock5204 TGTGTATGTGATGTGTGTATGT #rat_gr1088116_libT2S2 22 1 sblock5204 gcccttatgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaaacatatacatgcacacatacacacacactggcacaaacacacacacacacacaaaatgg ************************************************************************************************************************ sblock5204 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 sblock5204 ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................... #ENSRNOT00000063004 ENSRNOG00000041251 sblock5204 .((.((.(((.((((..(((((((.((((.(((((((((((...((((((((((((......)))))))))))).)))))))))))......)))).)))))))..)))).))).)).)) 1.000 -50.40 # #sblock5204 chromosome:17:79274098:79274217:-1 Same_strand|Exonic_non-coding|ENSRNOT00000063004|ENSRNOG00000041251 ## Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000041251|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TG)n 2 54 -1 class=Simple_repeat,trf 4 44 0 class=trf,dust 79274131 79274145 0 class=dust,trf 399 425 0 class=trf,(CATATA)n 4 52 -1 class=Simple_repeat,(CATATA)n 8 48 -1 class=Simple_repeat,trf 436 476 0 class=trf,(TG)n 29 54 -1 class=Simple_repeat,dust 79274168 79274208 0 class=dust} ========== sblock5205 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock5205: 0.001 #forester #identity: 0.00 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT2S1 22 16 sblock5205 CATATACATGCACACATACAC #rat_gr308196_libT2S1 21 6 sblock5205 ATATACATGCACACATACACA #rat_gr211593_libT2S1 21 5 sblock5205 ATATACATGCACACATACA #rat_gr211587_libT2S2 19 4 sblock5205 TATACATGCACACATACACAC #rat_gr791503_libT2S2 21 3 sblock5205 ATATACATGCACACATACACACAC #rat_gr211597_libT2S1 24 2 sblock5205 TATACATGCACACATACACAC #rat_gr791503_libT2S1 21 2 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT2S2 22 2 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT3S1 22 2 sblock5205 CATATACATGCACACATACACAC #rat_gr308199_libT2S1 23 2 sblock5205 CATATACATGCACACATACACAC #rat_gr308199_libT2S2 23 2 sblock5205 ATATACATGCACACATACACA #rat_gr211593_libT2S2 21 2 sblock5205 ATATACATGCACACATACAC #rat_gr211592_libT2S1 20 2 sblock5205 CATATACATGCACACATACAC #rat_gr308196_libT2S2 21 2 sblock5205 ATATACATGCACACATACACACAC #rat_gr211597_libT1S2 24 1 sblock5205 ATATACATGCACACATACACACAC #rat_gr211597_libT3S1 24 1 sblock5205 ATACATGCACACATACACAC #rat_gr208068_libT2S1 20 1 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT1S1 22 1 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT3S2 22 1 sblock5205 ATATACATGCACACATACACAC #rat_gr211596_libT4S1 22 1 sblock5205 ATATACATGCACACATACACA #rat_gr211593_libT3S1 21 1 sblock5205 CATATACATGCACACATACACA #rat_gr308197_libT3S1 22 1 sblock5205 CATATACATGCACACATACACA #rat_gr308197_libT4S2 22 1 sblock5205 ATATACATGCACACATACAC #rat_gr211592_libT2S2 20 1 sblock5205 CATATACATGCACACATACAC #rat_gr308196_libT1S2 21 1 sblock5205 ACATATACATGCACACATACAC #rat_gr83164_libT2S1 22 1 sblock5205 ACATATACATGCACACATACAC #rat_gr83164_libT2S2 22 1 sblock5205 ATATACATGCACACATACA #rat_gr211587_libT2S1 19 1 sblock5205 ATATACATGCACACATACA #rat_gr211587_libT3S2 19 1 sblock5205 ATATACATGCACACATACA #rat_gr211587_libT4S2 19 1 sblock5205 ATATACATGCACACATAC #rat_gr211586_libT2S1 18 1 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT2S1 24 124 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT2S2 22 89 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT2S1 22 86 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT3S1 22 75 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT2S1 18 75 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT2S2 24 68 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT2S2 18 65 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT3S2 22 55 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT3S1 18 49 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT3S1 24 46 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT2S1 23 33 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT2S1 23 31 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT3S2 24 29 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT2S1 21 24 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT2S2 23 22 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT2S2 23 21 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT3S1 21 21 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT3S1 23 19 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT4S2 24 17 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT3S2 23 17 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT4S2 22 17 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT2S1 19 17 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT1S1 24 16 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT3S2 18 16 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT3S1 23 15 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT2S2 21 15 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT5S2 22 14 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT2S1 20 13 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT3S2 23 12 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT3S2 21 12 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT4S1 24 10 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT4S1 22 10 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT2S2 20 10 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT2S2 19 10 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT1S1 22 9 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT3S1 20 9 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT5S1 24 8 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT5S1 22 8 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT4S2 23 7 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT3S2 20 7 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT3S1 19 7 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT4S1 18 7 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT5S1 18 7 sblock5205 ATGTGATGTGTGTATGTAC #rat_gr237625_libT2S2 19 7 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT1S2 23 6 sblock5205 TGTGATGTGTGTATGTACATGT #rat_gr1084345_libT1S2 22 6 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT5S1 21 6 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT1S2 18 6 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT1S2 24 5 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT1S1 21 5 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT4S2 21 5 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT3S2 19 5 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT4S1 19 5 sblock5205 ATGTGATGTGTGTATGTACA #rat_gr237626_libT2S2 20 5 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT4S2 18 5 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT5S2 18 5 sblock5205 ATGTGATGTGTGTATGTAC #rat_gr237625_libT2S1 19 5 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT1S1 23 4 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT4S2 23 4 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT5S2 21 4 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT3S2 22 4 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT2S1 21 4 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT2S2 21 4 sblock5205 TGTGATGTGTGTATGTACATGTGT #rat_gr1084347_libT5S2 24 3 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT5S1 23 3 sblock5205 ATGTGATGTGTGTATGTACATGTG #rat_gr237632_libT2S1 24 3 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT1S1 20 3 sblock5205 TGTGATGTGTGTATGTACAT #rat_gr1084343_libT5S1 20 3 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT1S1 19 3 sblock5205 ATGTGATGTGTGTATGTACA #rat_gr237626_libT3S1 20 3 sblock5205 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT2S2 23 2 sblock5205 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT3S1 23 2 sblock5205 TGTGATGTGTGTATGTACATGTG #rat_gr1084346_libT4S1 23 2 sblock5205 GTGATGTGTGTATGTACATGT #rat_gr645652_libT2S2 21 2 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT1S2 23 2 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT4S1 23 2 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT5S1 23 2 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT1S2 21 2 sblock5205 TGTGATGTGTGTATGTACATG #rat_gr1084344_libT4S1 21 2 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT2S1 22 2 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT3S1 22 2 sblock5205 ATGTGATGTGTGTATGTACA #rat_gr237626_libT2S1 20 2 sblock5205 ATGTGATGTGTGTATGTA #rat_gr237624_libT3S1 18 2 sblock5205 ATGTGCATGTGTGTATGTGAT #rat_gr237723_libT2S2 21 2 sblock5205 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT2S1 25 1 sblock5205 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT2S2 25 1 sblock5205 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT3S1 25 1 sblock5205 TGTGATGTGTGTATGTACATGTGTG #rat_gr1084348_libT4S1 25 1 sblock5205 GATGTGTGTATGTACATGTGT #rat_gr523537_libT3S1 21 1 sblock5205 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT2S1 23 1 sblock5205 GTGATGTGTGTATGTACATGTGT #rat_gr645653_libT5S1 23 1 sblock5205 ATGTGATGTGTGTATGTACATGTGT #rat_gr237633_libT3S1 25 1 sblock5205 ATGTGATGTGTGTATGTACATGTG #rat_gr237632_libT3S1 24 1 sblock5205 ATGTGATGTGTGTATGTACATGT #rat_gr237631_libT1S1 23 1 sblock5205 GTGATGTGTGTATGTACATG #rat_gr645651_libT2S2 20 1 sblock5205 GTGATGTGTGTATGTACATG #rat_gr645651_libT3S2 20 1 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT2S2 22 1 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT4S1 22 1 sblock5205 ATGTGATGTGTGTATGTACATG #rat_gr237630_libT4S2 22 1 sblock5205 GTGATGTGTGTATGTACAT #rat_gr645650_libT2S1 19 1 sblock5205 GTGATGTGTGTATGTACAT #rat_gr645650_libT3S1 19 1 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT1S2 21 1 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT3S2 21 1 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT5S1 21 1 sblock5205 ATGTGATGTGTGTATGTACAT #rat_gr237629_libT5S2 21 1 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT1S2 19 1 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT5S1 19 1 sblock5205 TGTGATGTGTGTATGTACA #rat_gr1084335_libT5S2 19 1 sblock5205 TATGTGATGTGTGTATGTACA #rat_gr798183_libT3S1 21 1 sblock5205 TGTGATGTGTGTATGTAC #rat_gr1084334_libT1S1 18 1 sblock5205 ATGTGATGTGTGTATGTAC #rat_gr237625_libT3S2 19 1 sblock5205 TATGTGATGTGTGTATGTAC #rat_gr798182_libT3S2 20 1 sblock5205 ATGTGATGTGTGTATGTA #rat_gr237624_libT4S1 18 1 sblock5205 TGTGTATGTGATGTGTGTATGT #rat_gr1088116_libT2S2 22 1 sblock5205 tgcccttatgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaaacatatacatgcacacatacacacacactggcacaaacacacacaaaatggca ******************************************************************************************************************* sblock5205 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 sblock5205 .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................... #ENSRNOT00000063016 ENSRNOG00000041263 sblock5205 .(((.((.(((.((((....(((((..(((.(((((((((((...((((((((((((......)))))))))))).))))))))))))))..)))))..)))).))).)).))). 1.000 -50.70 # #sblock5205 chromosome:17:79274309:79274423:-1 Same_strand|Boundary_non-coding|ENSRNOT00000063016|ENSRNOG00000041263 ## Same_strand|Exonic_non-coding|ENSRNOT00000063016|ENSRNOG00000041263 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000041263|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TG)n 21 46 -1 class=Simple_repeat,dust 79274373 79274413 0 class=dust,trf 4 44 0 class=trf,trf 641 681 0 class=trf,trf 33 48 0 class=trf,(CATATA)n 4 52 -1 class=Simple_repeat,dust 79274336 79274350 0 class=dust,(CATATA)n 8 48 -1 class=Simple_repeat,(TG)n 2 46 -1 class=Simple_repeat,trf 604 630 0 class=trf} ========== sblock9475 (miRNA) [miRNAunknown_cloningOK_multiarm_DicerNOK_randfoldOK] ========== #randfold sblock9475: 0.001 #forester #identity: 0.00 sblock9475 CTGACAGACATGTACACACACA #rat_gr435737_libT3S1 22 7 sblock9475 CTGACAGACATGTACACACAC #rat_gr435736_libT3S1 21 2 sblock9475 CTGACAGACATGTACACACAC #rat_gr435736_libT4S2 21 2 sblock9475 CTGACAGACATGTACACA #rat_gr435735_libT2S1 18 2 sblock9475 CTGACAGACATGTACACACACA #rat_gr435737_libT2S1 22 1 sblock9475 TGTGTGTGTGTGTCTGTCTTCTG #rat_gr1089549_libT4S1 23 1 sblock9475 TGTGTGTGTGTGTCTGTCTTC #rat_gr1089548_libT3S1 21 1 sblock9475 gtcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcttctggccaccatgcacaCTGACAGACATGTACACACACAtgcaggcacacgtaaggac *************************************************************************************************************** sblock9475 .........<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...................... #ENSRNOT00000063259 ENSRNOG00000041506 sblock9475 (((((..((((((.((((((((((((((..(((.((((((((((((...(((....)))...)))))))))..))).)))..)))))))))))))).))))))...))))) 1.000 -64.00 # #sblock9475 chromosome:5:121903146:121903256:-1 Opposite_strand|Exonic_non-coding|ENSRNOT00000063259|ENSRNOG00000041506 ## ENSRNOG00000041506|miRNA|| ## {Repeats: (CA)n 2 48 -1 class=Simple_repeat,dust 121903210 121903223 0 class=dust,trf 1 18 0 class=trf,(CA)n 2 19 -1 class=Simple_repeat} ========== block5195 [novel_randfoldOK] ========== #randfold block5195: 0.002 #forester #identity: 0.00 block5195 GGAGCTCCCTCGCCTTCAGCTCC #rat_gr588349_libT5S1 23 1 block5195 GGAGCTCCCTCGCCTTCAGC #rat_gr588348_libT5S2 20 1 block5195 ctagatctctagaagctggtggcagggctgctgcctacactccctcagGGAGCTCCCTCGCCTTCAGCTCCcagtggtctg ********************************************************************************* block5195 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000009283 ENSRNOG00000006873 Dnase1 block5195 .((((((.((...((((((.(((((((..(((.(((..........))).))).)))).))).))))))...)).)))))) 0.970 -35.00 # #block5195 chromosome:10:11763853:11763933:-1 Same_strand|Intronic_coding|ENSRNOT00000009283|ENSRNOG00000006873 ## ENSRNOG00000006873|protein_coding|Dnase1|Deoxyribonuclease-1 precursor (EC 3.1.21.1) (Deoxyribonuclease I) (DNase I). [Source:UniProtKB/Swiss-Prot;Acc:P21704] ========== block5868 [novel_mirtron_randfoldOK] ========== #randfold block5868: 0.001 randfold humanZ3p4_block5868: 0.215 #forester humanZ3p4_block5868: 0.368747 #identity: 78.57 block5868 TGAGGACC-CTGTCTTCCTAC #rat_gr945129_libT1S2 20 1 block5868 TGGGTTAAATCCAGGGTGAGGTTTGTGGTAGCTGGGGAGCGTCAAGGTCCAGCAGAAT--GCTGGCTGCTCTGAGGACC-CTGTCTTCCTACAGTTCTTCCTTCGCCCTGGATTCCCAT humanZ3p4 ------------------------GAAGTAGC-----AGC----AGGTCCAGCAGGATGAGCTGATCACCGTGAGGACCTCTCTCCTCCCAC--------------------------- * ***** *** *********** ** **** * ******** ** ** *** ** block5868 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000004589 ENSRNOG00000003455 Zfp13 block5868 ((((...((((((((((((((.....((.((((((((((...((.((((((((((... .....)))))....))))) .))..))))).)))))))..)))))))))))))))))). 0.930 -54.20 # humanZ3p4 ..((.((. ((. ((((((.((.((.(((.....)))))))..)))))))))).))..... 0.489 -16.60 # #block5868 chromosome:10:12851688:12851803:-1 Same_strand|Intronic_coding|ENSRNOT00000004589|ENSRNOG00000003455 ## ENSRNOG00000003455|protein_coding|Zfp13|zinc finger protein 13 Gene [Source:MGI Symbol;Acc:MGI:99159] #humanZ3p4 chromosome:16:3105719:3105874:1 Same_strand|Boundary_coding|ENST00000219091|ENSG00000122386|protein_coding|Zinc finger protein 205 (Zinc finger protein 210) [Source:UniProtKB/Swiss-Prot;Acc:O95201] ========== block6229 [novel_cloningOK_5varHIGH_mirtron_randfoldOK] ========== #randfold block6229: 0.001 #forester #identity: 0.00 block6229 AACCACCCTTGTCCCTTCCCTCA #rat_gr31466_libT5S1 23 2 block6229 ACCCTTGTCCCTTCCCTCAG #rat_gr100591_libT3S1 20 1 block6229 GAACCACCCTTGTCCCTTCCCTCA #rat_gr482756_libT1S2 24 1 block6229 GAACCACCCTTGTCCCTTCCCTCA #rat_gr482756_libT4S1 24 1 block6229 GAACCACCCTTGTCCCTTCCCTC #rat_gr482755_libT1S1 23 1 block6229 GAACCACCCTTGTCCCTTCCCTC #rat_gr482755_libT4S2 23 1 block6229 GAACCACCCTTGTCCCTTCCCT #rat_gr482754_libT2S2 22 1 block6229 GAACCACCCTTGTCCCTTCCC #rat_gr482753_libT1S1 21 1 block6229 GAACCACCCTTGTCCCTTCCC #rat_gr482753_libT1S2 21 1 block6229 gtggttaactcctttcaaaatgcccagttgggaagggaggggtggggctgctaggtgggaatgactgctaGAACCACCCTTGTCCCTTCCCTCAGgggtgcacttggaaggcccgttcat ************************************************************************************************************************ block6229 >+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000008537 ENSRNOG00000006460 RGD1304601 block6229 ((((......((((((((..(((((....((((((((((((((((..((....(((((......)))))))..)))))))..)))))))))....)))))...)))))))).....)))) 0.980 -54.40 # #block6229 chromosome:10:13409755:13409874:-1 Same_strand|Intronic_coding|ENSRNOT00000008537|ENSRNOG00000006460 ## ENSRNOG00000006460|protein_coding|RGD1304601|Putative N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (GlcNAc 6-P deacetylase) (Amidohydrolase domain-containing protein 2). [Source:UniProtKB/Swiss-Prot;Acc:Q5BJY6] ========== block6557 [novel_randfoldOK] ========== #randfold block6557: 0.010 #forester #identity: 0.00 block6557 AGAACAACCACCTCTCAGGA #rat_gr132850_libT5S1 20 1 block6557 ggggaatcctttagcctgtgctgagaagtggctgttttggattgggactggggattggccAGAACAACCACCTCTCAGGAatggccccta ****************************************************************************************** block6557 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004172 ENSRNOG00000002997 Slc9a3r2 block6557 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000043592 ENSRNOG00000002997 Slc9a3r2 block6557 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004066 ENSRNOG00000002997 Slc9a3r2 block6557 ((((.........(((....((((((.((((.((((((((..................)))))))).)))).))))))....))))))). 0.630 -32.37 # #block6557 chromosome:10:13894917:13895006:-1 Same_strand|Intronic_coding|ENSRNOT00000004172|ENSRNOG00000002997 ## ENSRNOG00000002997|protein_coding|Slc9a3r2|Na(+)/H(+) exchange regulatory cofactor NHE-RF2 (NHERF-2) (Tyrosine kinase activator protein 1) (TKA-1) (SRY-interacting protein 1) (SIP- 1) (Solute carrier family 9 isoform A3 regulatory factor 2) (NHE3 kinase A regulatory protein E3KARP) (Sodium-hydroge [Source:UniProtKB/Swiss-Prot;Acc:Q920G2] ========== block6619 [novel_mirtron_randfoldOK] ========== #randfold block6619: 0.001 randfold humanZ1p5_block6619: 0.296 #forester humanZ1p5_block6619: 0.320172 #identity: 63.33 block6619 TCTGACCCTGATTTTATCCCAGG #rat_gr904763_libT1S2 23 1 block6619 TCTGACCCTGATTTTATCCCAG #rat_gr904762_libT5S2 22 1 block6619 --------TACGGGATGGGATGAGGCAGGGGAAAGGACAGACAGCACTTGGGCTTGTCTGACCCTGATTTTATCCCAGGACGTG humanZ1p5 GTGGGCCCCAAGGGCAGGGAAGAGTCGGGGTGGAGTGGAGGC----------CCCATCTGACCCTAGTCTAACCCCAG------ * *** **** *** * *** ** ** * * ********* * * * ***** block6619 +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> #ENSRNOT00000018405 ENSRNOG00000013429 Tbl3 block6619 ((((...(((((((((((((((....(((((...(((......))))))))..))))).))))))))))...)))) 1.000 -34.30 # humanZ1p5 .((((......((((((((.(((...(((((.........)) ))).)))..)))).))))...)))). 0.414 -24.40 # #block6619 chromosome:10:13954910:13954985:-1 Same_strand|Boundary_coding|ENSRNOT00000018405|ENSRNOG00000013429 ## ENSRNOG00000013429|protein_coding|Tbl3|transducin (beta)-like 3 [Source:RefSeq_peptide;Acc:NP_001008278] #humanZ1p5 chromosome:16:1967654:1967769:1 Same_strand|Boundary_coding|ENST00000332704|ENSG00000183751|protein_coding|WD repeat-containing protein SAZD (Transducin beta-like 3 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q12788] ## Same_strand|Boundary_non-coding|ENST00000355082|ENSG00000183751|protein_coding|WD repeat-containing protein SAZD (Transducin beta-like 3 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q12788] ========== block7261 [novel_mirtron_randfoldOK] ========== #randfold block7261: 0.010 #forester #identity: 0.00 block7261 CTGGCCTGCTCACTCCTCCT #rat_gr449240_libT3S1 20 1 block7261 ggggacatggaggggtcagagggtcaggacctagctgctcctgcagggattcCTGGCCTGCTCACTCCTCCTagggcctg ******************************************************************************** block7261 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> #ENSRNOT00000026139 ENSRNOG00000019174 NP_001099243.1 block7261 .(((....((((((((.((.(((((((((((...((((....))))))..))))))))).)).)))))))).....))). 1.000 -41.20 # #block7261 chromosome:10:14990336:14990415:-1 Same_strand|Intronic_coding|ENSRNOT00000026139|ENSRNOG00000019174 ## ENSRNOG00000019174|protein_coding|NP_001099243.1|CTF18, chromosome transmission fidelity factor 18 homolog [Source:RefSeq_peptide;Acc:NP_001099243] ========== block7720 [novel_randfoldOK] ========== #randfold block7720: 0.004 randfold human22p5_block7720: 0.294 randfold mouseZ8p5_block7720: 0.001 #forester human22p5_block7720: 0.423551 forester mouseZ8p5_block7720: 0.735587 #identity: 72.50 block7720 CGCCCCCTGGCGGCTTCATG #rat_gr392928_libT3S2 20 1 block7720 GCAACCTGCAACGATCCAGCGCCCCCTGGCGGCTTCATGGGTTTCAGAACCTCTTGGAG-----CGCAGCCAGGGGGCACAGAGGGCGAAGCCAGGGC human22p5 -------------------CGCCCCCTGGCGGCTTAGAGCG----AGCATCGCTCCGCGACCCACTTAGACGGGGCGTCCCC---------------- mouseZ8p5 -------------------CGCCCCCTGGCGGCCTCTTGTGTTTCAGGACATCTTTGAG-----CTCAGCCAGGGGGCA------------------- ************** * * * ** * ** * * * ** * *** * block7720 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048977 ENSRNOG00000031686 LOC360504 block7720 ....(((((..((.(((...((((((((((.((((((.(((((....)))))..))))) )...)))))))))).....)))))..)).))).. 0.970 -47.90 # human22p5 ((((((((((.((.((.((((( .....)))))...)).)).)).))..))))))..... 0.980 -22.20 # mouseZ8p5 .((((((((((((.(((..(((((....)))))....))) .)).)))))))))). 0.990 -32.00 # #block7720 chromosome:10:15568523:15568615:-1 Same_strand|Intronic_non-coding|ENSRNOT00000048977|ENSRNOG00000031686 ## ENSRNOG00000031686|protein_coding|LOC360504|hemoglobin alpha 2 chain [Source:RefSeq_peptide;Acc:NP_001007723] #human22p5 chromosome:19:45726957:45727015:-1 Opposite_strand|Boundary_non-coding|ENST00000392023|ENSG00000160460|protein_coding|Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3)(Beta-IV spectrin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H254] ## Opposite_strand|Intronic_coding|ENST00000392025|ENSG00000160460|protein_coding|Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3)(Beta-IV spectrin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H254] ## {SimpF: -1 Eponine} #mouseZ8p5 chromosome:11:32199999:32200131:1 Same_strand|Boundary_non-coding|ENSMUST00000020535|ENSMUSG00000020295|protein_coding|hemoglobin, theta 1 Gene [Source:MGI (curated);Acc:Hbq1-001] ========== block7759 [novel_randfoldOK] ========== #randfold block7759: 0.001 randfold human63p5_block7759: 0.280 randfold mouse53p5_block7759: 0.260 #forester human63p5_block7759: 0.423551 forester mouse53p5_block7759: 0.526097 #identity: 66.26 block7759 CGCCCCCTGGCGGCTTCATG #rat_gr392928_libT3S2 20 1 block7759 CGATCCAGCGCCCCCTGGCGGCTTCATGGGTTTCAGAACCTCTTGGAG--CGCAGCCAGGGGGCACAGAGGGCG human63p5 --------CGCCCCCTGGCGGCTTAGAGCG----AGCATCGCTCCGCGACC-CACTTAGACG-------GGGCG mouse53p5 --------CGCCCCCTGGCGGCGCGCCGGGGCGGAGCGGCCCGCCGCAGCCGCAGCCGGCGG-------AGGCG ************** * * ** * * * * ** * * **** block7759 ((.(((...((((((((((.((((((.(((((....)))))..))))) )...)))))))))).....))))) 1.000 -39.50 # human63p5 ((((((((((.((.((.((((( .....)))))...)).) ).)).))..) ))))) 0.990 -21.60 # mouse53p5 (((((((((((((((((.((((.((...)).)))).))).)))...))))).)) .)))) 0.939 -36.90 # #block7759 chromosome:10:15582464:15582535:-1 intergenic #human63p5 chromosome:19:45726932:45727043:-1 Opposite_strand|Boundary_non-coding|ENST00000392023|ENSG00000160460|protein_coding|Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3)(Beta-IV spectrin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H254] ## Opposite_strand|Intronic_coding|ENST00000392025|ENSG00000160460|protein_coding|Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3)(Beta-IV spectrin) [Source:UniProtKB/Swiss-Prot;Acc:Q9H254] ## {SimpF: -1 Eponine, -1 Eponine} #mouse53p5 chromosome:11:104303664:104303775:-1 Same_strand|Boundary_non-coding|ENSMUST00000106977|ENSMUSG00000018412|protein_coding|RIKEN cDNA 1700081L11 gene Gene [Source:MGI Symbol;Acc:MGI:1923969] ## Same_strand|Intronic_non-coding|ENSMUST00000106974|ENSMUSG00000018412|protein_coding|RIKEN cDNA 1700081L11 gene Gene [Source:MGI Symbol;Acc:MGI:1923969] ## {Repeats: dust 0 class=dust,GC_rich -1 class=Low_complexity,trf 0 class=trf} ## {SimpF: oe = 0.77 1 CpG, -1 Eponine, -1 Eponine, 1 Eponine} ========== block7786 [novel_randfoldOK] ========== #randfold block7786: 0.010 #forester #identity: 0.00 block7786 CGCAAGACTGAGTCTATGACAGA #rat_gr391522_libT5S1 23 1 block7786 gcataCGCAAGACTGAGTCTATGACAGAagccccatcctttggcctctctctaggcatgtctctgcagacatgca *************************************************************************** block7786 ((((..(((((((...(((((.((.(((.(((.........))).))).)))))))..)))).)))....)))). 0.950 -23.20 # #block7786 chromosome:10:15590292:15590366:-1 intergenic ========== block8539 [novel_randfoldOK] ========== #randfold block8539: 0.003 #forester #identity: 0.00 block8539 GGGTACTCCCAAGGTTCCTGGT #rat_gr614481_libT3S2 22 1 block8539 ctgctggggaccgaaaGGGTACTCCCAAGGTTCCTGGTgggagtatctgagactgcctggagccttgtgtgaccatgttcgtttcttggtagc ********************************************************************************************* block8539 ((((..((((.((((..(((((...(((((((((.(((((............))))).))))))))).))).))...)))).))))..)))). 1.000 -41.50 # #block8539 chromosome:10:16871039:16871131:-1 intergenic ========== block8667 [novel_randfoldOK] ========== #randfold block8667: 0.010 #forester #identity: 0.00 block8667 TGTCTGTGTCTGGCTTGTCT #rat_gr1082001_libT2S1 20 1 block8667 ctgtctggtgggaggatagagtaagatgttaagatcacagagggtgaatagaggctccttgacctTGTCTGTGTCTGGCTTGTCTccctcctgctctcagacag ******************************************************************************************************** block8667 (((((((..((.((((..(((((((......(((.((((((((((.....(((....))).))))..)))))))))..)))).)))..)))).))..))))))) 1.000 -40.60 # #block8667 chromosome:10:17105384:17105487:-1 intergenic ========== block15863 [novel_randfoldOK] ========== #randfold block15863: 0.004 randfold mouseZ15p5_block15863: 0.007 #forester mouseZ15p5_block15863: 0.720923 #identity: 92.77 block15863 AGGCCCTGAGGACCCTGAGT #rat_gr179825_libT1S2 20 1 block15863 GCAGAAAAAAACGCACAGGGTTATGCAGCTGTTCTCGGGGCTTCCAGAGAGTCAGTTAACGGCTACCTCTATAACAGGCCCTGAGGACCCTGAGTGTCAGAGCTGCG mouseZ15p5 ------------GCACAGGGTTTTGCAGCTGTTCTCGGGGCTTCCGGGGAGTCCGTTAACGGCTACCTCTCTAACAGGCCCTGAGAACCCTGAG------------G ********** ********************** * ***** **************** ************** ******** * block15863 ((((......((((.(((((((...........((((((((((....((((..(((.....)))..)))).....))))))))))))))))).)))).....)))). 0.670 -43.90 # mouseZ15p5 ...((((((...........(((((((((((..((((((.(((....)))....))))))...))))))))))))))))).. . 0.798 -36.90 # #block15863 chromosome:10:36521342:36521448:-1 intergenic #mouseZ15p5 chromosome:11:50757190:50757336:-1 Same_strand|Boundary_non-coding|ENSMUST00000101256|ENSMUSG00000072983|protein_coding|RIKEN cDNA 4933414I15 gene Gene [Source:MGI Symbol;Acc:MGI:1918374] ========== block17727 [novel_randfoldOK] ========== #randfold block17727: 0.003 #forester #identity: 0.00 block17727 CCATGGACGCTGTGGCAGCTT #rat_gr337565_libT3S2 21 1 block17727 cttccagtgttcacttaCCATGGACGCTGTGGCAGCTTccaacagcagcctgctgcctggctgcctcagtgaccagccctcagtaacattctgag *********************************************************************************************** block17727 (((..((((((.(((.....(((.(((((.(((((((.....((((.....))))...))))))).))))).)))......)))))))))..))) 0.840 -36.40 # #block17727 chromosome:10:40117304:40117398:-1 intergenic ========== block19975 [novel_randfoldOK] ========== #randfold block19975: 0.008 randfold humanZ4p5_block19975: 0.101 randfold mouse116p5_block19975: 0.335 #forester humanZ4p5_block19975: 0.565397 forester mouse116p5_block19975: 0.532345 #identity: 92.86 block19975 TGGCCTTGTGGTGGCTCTCC #rat_gr1013211_libT5S1 20 1 block19975 CGACCAGCAGGGCCTCACTTGCCCTTGGCCTTGTGGTGGCTCTCCGTCTTCTTGGGCAGCAACACCGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATGGTC humanZ4p5 -------------------------TGGCCTTGTGGTGGCTCTCCGTCTTCTTGGGCAGCAGTACGGCCT----------------------------------- mouse116p5 ----------------------CCTTGGCCTTGTGGTGGCTCTCGGTCTTCTTCGGCAGCAGTACGGCCTGG--------------------------------- ******************* ******** ******* ** **** block19975 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000033866 ENSRNOG00000022983 Trim17 block19975 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000048642 ENSRNOG00000022983 Trim17 block19975 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000033894 ENSRNOG00000022983 Trim17 block19975 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000058453 ENSRNOG00000022983 Trim17 block19975 .((((((((((((....(((((((....((..(((((((((.((((......)))).)))..))))))..)).....))))))).....)))))))....))))) 1.000 -51.80 # humanZ4p5 .((((..(((.((.((.((((......)))).)))).))))))). 1.000 -16.00 # mouse116p5 ((..((((..(((.((.((.((((......)))).)))).))))))).)) 1.000 -16.10 # #block19975 chromosome:10:45246207:45246311:-1 Opposite_strand|Intronic_coding|ENSRNOT00000058453|ENSRNOG00000022983 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000003885|ENSRNOG00000022983 ## ENSRNOG00000022983|protein_coding|Trim17|Tripartite motif-containing protein 17 (Testis RING finger protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9WV59] ## {SimpF: oe = 0.70 -1 CpG} #humanZ4p5 chromosome:1:226711715:226711859:1 Opposite_strand|Exonic_non-coding|ENST00000366695|ENSG00000181218|protein_coding|Histone H2A type 3 [Source:UniProtKB/Swiss-Prot;Acc:Q7L7L0] ## {SimpF: rank = 2 -1 FirstEF,rank = 3 -1 FirstEF,oe = 0.82 0 CpG,rank = 1 -1 FirstEF} #mouse116p5 chromosome:13:21878703:21878752:1 Opposite_strand|Exonic_coding|ENSMUST00000091751|ENSMUSG00000069309|protein_coding|histone cluster 1, H2an Gene [Source:MGI (curated);Acc:Hist1h2an-001] ## {SimpF: oe = 0.78 1 CpG} ========== block20091 [novel_randfoldOK] ========== #randfold block20091: 0.005 #forester #identity: 0.00 block20091 TCTGAAACTGTTTTCTACAG #rat_gr904087_libT5S1 20 1 block20091 ggtccatactgggttggcaggaagtggggaggcccctgagcctaggcacaggcaatgggtcctcatggttcaggggacatcTCTGAAACTGTTTTCTACAGtgaccc *********************************************************************************************************** block20091 ((((...((((((..(((((....((((((..((((((((((.(((..((.....))...)))...))))))))))...))))))...)))))..)).)))))))). 0.950 -45.90 # #block20091 chromosome:10:45459937:45460043:-1 intergenic ========== block20227 [novel_randfoldOK] ========== #randfold block20227: 0.004 #forester #identity: 0.00 block20227 TGGCTCAGCTCAATAGGGAC #rat_gr1015638_libT2S1 20 1 block20227 gccagagtctgttcgagctttttacaaggctgggcacattctcctggtctgagtagtagccctggctactacaaaggaggatggggcttgTGGCTCAGCTCAATAGGGACttcagc ******************************************************************************************************************** block20227 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000050370 ENSRNOG00000022548 RGD1565729_predicted block20227 ((..(((((((((.(((((..(((((((.((.....(((((((((.......((((((((....))))))))..))))))))))).)))))))...))))))))..))))))..)) 0.840 -46.90 # #block20227 chromosome:10:45691741:45691856:-1 Same_strand|Intronic_non-coding|ENSRNOT00000050370|ENSRNOG00000022548 ## ENSRNOG00000022548|protein_coding|RGD1565729_predicted| ========== block20878 [novel_mirtron_randfoldOK] ========== #randfold block20878: 0.002 #forester #identity: 0.00 block20878 TCTGACTCTTGTCCTGTCCA #rat_gr904900_libT1S1 20 1 block20878 gtggccttccaagatggtgcagggacaggggcagtaggcaggggccggtcatcttaggtccccacctgagccTCTGACTCTTGTCCTGTCCAggagcacctgtctgtgagccac ****************************************************************************************************************** block20878 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000006753 ENSRNOG00000004159 Fliih block20878 ((((.((..((.((((((((..(((((.((((((.((.(((((((........((((((....))))))))))))).)).)))))))))))....))))).)))))..)))))) 0.460 -53.10 # #block20878 chromosome:10:46871817:46871930:-1 Same_strand|Intronic_coding|ENSRNOT00000006753|ENSRNOG00000004159 ## ENSRNOG00000004159|protein_coding|Fliih|flightless I homolog [Source:RefSeq_peptide;Acc:NP_001008280] ========== block22510 [novel_randfoldOK] ========== #randfold block22510: 0.004 #forester #identity: 0.00 block22510 CGTCTGCTTGTGGGTTTTCCT #rat_gr404554_libT2S1 21 1 block22510 gcatggttgtctccagcccctcCGTCTGCTTGTGGGTTTTCCTgtcagctcaggaagacatctcacgagtttttgtacaaacgctggcttaccacgca ************************************************************************************************** block22510 ((.((((.....(((((.....((...(((((((.(((((((((......)))))))))....)))))))...)).......)))))...)))).)). 0.970 -35.30 # #block22510 chromosome:10:50090416:50090513:-1 intergenic ========== block23093 [novel_randfoldOK] ========== #randfold block23093: 0.004 #forester #identity: 0.00 block23093 CAGTCTTGCTTGGTTGCCCA #rat_gr302936_libT1S1 20 1 block23093 acacctCAGTCTTGCTTGGTTGCCCAtcgctacaatcatccataactatttcacattttgattatagttatggcacccatgaggcaagaaaagctgta ************************************************************************************************** block23093 (((.((...((((((((((.((.((((.((((.(((((....................))))).)))).)))))).)))...)))))))..)).))). 0.810 -27.05 # #block23093 chromosome:10:51827650:51827747:-1 intergenic ========== block24589 [novel_mirtron_randfoldOK] ========== #randfold block24589: 0.009 #forester #identity: 0.00 block24589 TCACTCCTCTCCTTCACTTCCAG #rat_gr814747_libT1S2 23 2 block24589 ggggaaggtcaggctgaggaaggcaggggggatgtgcaggctggggctggacctgaacgaacttggcctTCACTCCTCTCCTTCACTTCCAGgttacatggcattttcttctcc ****************************************************************************************************************** block24589 >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000007087 ENSRNOG00000005193 LOC687570 block24589 (((((((((((.(((..(((((..((((((((.(((.((((..((..((........))..))..)))).)))))))).)))...))))).)))....)))).....))))))) 0.980 -48.70 # #block24589 chromosome:10:55746298:55746411:-1 Same_strand|Intronic_coding|ENSRNOT00000007087|ENSRNOG00000005193 ## ENSRNOG00000005193|protein_coding|LOC687570|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) [Source:RefSeq_peptide;Acc:NP_001099261] ========== block24854 [novel_cloningHIGH] ========== #randfold block24854: 0.141 #forester #identity: 0.00 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT3S1 24 34 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT3S2 24 24 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT5S1 24 15 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT3S1 20 12 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT3S1 22 11 block24854 CCATATGATGTGACCTTACTCAG #rat_gr335858_libT3S1 23 8 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT1S2 24 8 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT2S1 24 8 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT5S2 24 8 block24854 CCATATGATGTGACCTTACTCAG #rat_gr335858_libT2S2 23 6 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT1S1 24 6 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT2S2 20 6 block24854 CCATATGATGTGACCTTACTCAG #rat_gr335858_libT5S2 23 5 block24854 CCATATGATGTGACCTTACTCAG #rat_gr335858_libT3S2 23 4 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT3S2 22 4 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT5S2 22 4 block24854 CCATATGATGTGACCTTACTCAG #rat_gr335858_libT5S1 23 3 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT2S2 24 3 block24854 CCATATGATGTGACCTTACTC #rat_gr335856_libT3S1 21 3 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT2S1 22 3 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT5S1 22 3 block24854 CCATATGATGTGACCTTAC #rat_gr335855_libT3S1 19 3 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT3S2 20 3 block24854 ACCATATGATGTGACCTTA #rat_gr92483_libT3S1 19 3 block24854 CCATATGATGTGACCTTACTCA #rat_gr335857_libT3S2 22 2 block24854 ACCATATGATGTGACCTTACTCA #rat_gr92487_libT3S1 23 2 block24854 CCATATGATGTGACCTTACTC #rat_gr335856_libT1S1 21 2 block24854 CCATATGATGTGACCTTAC #rat_gr335855_libT1S2 19 2 block24854 CCATATGATGTGACCTTAC #rat_gr335855_libT5S2 19 2 block24854 ACCATATGATGTGACCTTA #rat_gr92483_libT3S2 19 2 block24854 ACCATATGATGTGACCTT #rat_gr92482_libT2S1 18 2 block24854 ACCATATGATGTGACCTT #rat_gr92482_libT5S2 18 2 block24854 GTGACCTTACTCAGCTGA #rat_gr644170_libT1S1 18 1 block24854 ACCATATGATGTGACCTTACTCAG #rat_gr92488_libT4S1 24 1 block24854 CCATATGATGTGACCTTACTCA #rat_gr335857_libT3S1 22 1 block24854 ACCATATGATGTGACCTTACTCA #rat_gr92487_libT1S2 23 1 block24854 ACCATATGATGTGACCTTACTCA #rat_gr92487_libT5S1 23 1 block24854 CCATATGATGTGACCTTACTC #rat_gr335856_libT3S2 21 1 block24854 CCATATGATGTGACCTTACTC #rat_gr335856_libT5S1 21 1 block24854 ACCATATGATGTGACCTTACTC #rat_gr92486_libT2S2 22 1 block24854 ACCATATGATGTGACCTTACT #rat_gr92485_libT3S2 21 1 block24854 CCATATGATGTGACCTTAC #rat_gr335855_libT2S1 19 1 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT1S1 20 1 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT1S2 20 1 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT2S1 20 1 block24854 ACCATATGATGTGACCTTAC #rat_gr92484_libT5S2 20 1 block24854 ACCATATGATGTGACCTTA #rat_gr92483_libT5S1 19 1 block24854 ACCATATGATGTGACCTT #rat_gr92482_libT3S1 18 1 block24854 ACCATATGATGTGACCTT #rat_gr92482_libT3S2 18 1 block24854 aggagttcaagtgagtgtgggtgacttgcagatgaattgaatagggctaagagctttggacattcctttcttcctcttggctACCATATGATGTGACCTTACTCAGctgatcacc ******************************************************************************************************************* block24854 >>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000012983 ENSRNOG00000009722 Chd3 block24854 .((...(((..((((((.((((.((...((.(((..........(((((((((....((.....)).......)))))))))..))).))..)).))))))))))..)))...)) 0.900 -31.10 # #block24854 chromosome:10:56143487:56143601:-1 Same_strand|Boundary_non-coding|ENSRNOT00000057058|ENSRNOG00000009722 ## Same_strand|Intronic_coding|ENSRNOT00000012983|ENSRNOG00000009722 ## ENSRNOG00000009722|protein_coding|Chd3|Chromodomain helicase DNA-binding protein 3 long isoform (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q2KMK7] ========== block24962 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block24962: 0.010 #forester #identity: 0.00 block24962 TGGGGTGGGGGGGGGTCC #rat_gr1052637_libT1S1 18 5 block24962 TGGGGTGGGGGGGGGTCC #rat_gr1052637_libT2S1 18 5 block24962 TGGGGTGGGGGGGGGTCC #rat_gr1052637_libT3S2 18 1 block24962 TGGGGTGGGGGGGGGTCC #rat_gr1052637_libT5S1 18 1 block24962 TGGGGTGGGGGGGGGTCC #rat_gr1052637_libT5S2 18 1 block24962 ctagaggaggcattgcccgcccttgaagaagccatgcgggtaccagaggctggcactagatggtgccaggagtggggatggggccagccttttgaccTGGGGTGGGGGGGGGTCCtctgg ************************************************************************************************************************ block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000045220 ENSRNOG00000021356 DLP2 block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000029496 ENSRNOG00000021356 DLP2 block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000031194 ENSRNOG00000021356 DLP2 block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047939 ENSRNOG00000021356 DLP2 block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048270 ENSRNOG00000021356 DLP2 block24962 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000045432 ENSRNOG00000021356 DLP2 block24962 (((((((.......((((.(((((......(((...(((((...((((((((((.(((.......(((....)))...))).))))))))))..))))).)))))))).))))))))))) 0.760 -53.31 # #block24962 chromosome:10:56244077:56244196:-1 Same_strand|Intronic_coding|ENSRNOT00000045432|ENSRNOG00000021356 ## ENSRNOG00000021356|protein_coding|DLP2|Dynein axonemal heavy chain-like protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q2KML4] ## {Repeats: dust 56244082 56244099 0 class=dust} ========== block29776 [novel_randfoldOK] ========== #randfold block29776: 0.006 #forester #identity: 0.00 block29776 ACTCAGCAGAGTGTGTGCTCAG #rat_gr116871_libT4S2 22 2 block29776 ccagccaggctgagctgtaactggtactgaggcaggcgctgactgaatcgtgaagtccgaaatgACTCAGCAGAGTGTGTGCTCAGtgagcagacagtggcagcatcttttgga ****************************************************************************************************************** block29776 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000017218 ENSRNOG00000012818 NP_001101754.1 block29776 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048407 ENSRNOG00000012818 NP_001101754.1 block29776 ((((....((((.(((((..(((.((((((((((.((.(((.((((.((((..........)))).))))))).)).))).)))))))..))))))))..)))).....)))). 0.980 -45.20 # #block29776 chromosome:10:65243410:65243523:-1 Same_strand|Boundary_non-coding|ENSRNOT00000056163|ENSRNOG00000012818 ## Same_strand|Intronic_coding|ENSRNOT00000048407|ENSRNOG00000012818 ## ENSRNOG00000012818|protein_coding|NP_001101754.1|kinase suppressor of ras 1 [Source:RefSeq_peptide;Acc:NP_001101754] ========== block30158 [novel_randfoldOK] ========== #randfold block30158: 0.006 #forester #identity: 0.00 block30158 GCAGGCTGCCAGACTGGCCAC #rat_gr535420_libT3S2 21 1 block30158 gtcaagaagctggctccacctgagtggaggtccagaggcagcaaagtcaagctccgggggcaggagcagggGCAGGCTGCCAGACTGGCCACatgggaggacgaagtgagtgtgtggc ********************************************************************************************************************** block30158 ((((....(((.(((((.((((.((((.((((....((((((...(((..(((((.......)))))...)))..)))))).))))..)))).)))).)))....)).)))...)))) 0.790 -50.10 # #block30158 chromosome:10:65888148:65888265:-1 intergenic ========== block32237 [novel_randfoldOK] ========== #randfold block32237: 0.001 randfold mouseZ5p6_block32237: 0.001 #forester mouseZ5p6_block32237: 0.444765 #identity: 82.83 block32237 TCCCACCTCTTTCCCCTTTC #rat_gr838322_libT1S1 20 1 block32237 GGAGAGAGGGAGAGAAGGATAGAGAGGGAGGGAGAGAGGGAGAGAGGGAGGGAGATTTAGGAAGGACTCATCTTCCTCCTCTTCCCTCTCCCACCTCTTTCCCCTTTCCCTCTGTCT mouseZ5p6 ---GAGAGAGAGAAGGGGTTAGTGAGGGACCGAGAGAGGGAAAGA------GAGATTTCGGAGGGATTCCTCTTCCCTCTCTCCCCTCTCCCACCTCATTCCCCTTTC--------- ***** **** ** *** ****** ********** *** ******* *** *** ** ****** **** ************** ********** block32237 (((.((((((((((..(((..((((((..(((((((.((((((...((((((((((..((......)).))))))))))))))))))))))).))))))))).)))))))))).))) 1.000 -70.90 # mouseZ5p6 ..(((((.((((((((....(((((...(((((((((.(((( (..((((.....))))..)))))))))))))))))))....))))).)))..))))) 0.998 -47.40 # #block32237 chromosome:10:70716380:70716496:-1 intergenic #mouseZ5p6 chromosome:11:82335923:82336079:-1 intergenic ## {Repeats: dust 0 class=dust,trf 0 class=trf,CT-rich -1 class=Low_complexity,trf 0 class=trf,trf 0 class=trf} ========== block35596 [novel_randfoldOK] ========== #randfold block35596: 0.001 #forester #identity: 0.00 block35596 CAGGTTGCTGGTCCAATTTC #rat_gr301335_libT3S1 20 1 block35596 gatgtgcattcccagtgCAGGTTGCTGGTCCAATTTCcattcccatctctgagaggagataggaaggcctcattgggtcagccatctaggtgttttcttgcgcatc ********************************************************************************************************** block35596 ((((((((..........((((.((((..(((((..((.((((.((((((....)))))).))))))....)))))..)))).))))...........)))))))) 0.800 -44.70 # #block35596 chromosome:10:76785143:76785248:-1 intergenic ========== block36299 [novel_randfoldOK] ========== #randfold block36299: 0.002 #forester #identity: 0.00 block36299 TGATACCAGCAGCAAGACCTG #rat_gr954254_libT3S1 21 1 block36299 aggcctccttatgactTGATACCAGCAGCAAGACCTGttccttggctttacgacataagctatggcagacttgctgcaagtggataggtgtcaaaagggtgcc ******************************************************************************************************* block36299 .(((.(((((.((((....(((((((((((((..(((((...((((((........)))))).))))).))))))))...))).))...)))).))))).))) 1.000 -40.80 # #block36299 chromosome:10:78422842:78422944:-1 intergenic ========== block37684 [novel_randfoldOK] ========== #randfold block37684: 0.003 #forester #identity: 0.00 block37684 TAAAGTTTGGGATGTAATTC #rat_gr709701_libT2S1 20 1 block37684 ctctgcTAAAGTTTGGGATGTAATTCagccctaacttttgggctagcttatgtccttttttattttaaaaaaga ************************************************************************** block37684 .(((..((((((..(((((((((...(((((........)))))...))))))))).....))))))....))) 0.970 -19.80 # #block37684 chromosome:10:82406473:82406546:-1 intergenic ========== block37744 [novel_randfoldOK] ========== #randfold block37744: 0.008 randfold humanZ1p6_block37744: 0.001 randfold mouseZ6p6_block37744: 0.009 #forester humanZ1p6_block37744: 0.914456 forester mouseZ6p6_block37744: 0.903911 #identity: 97.14 block37744 ATGAGCAGTGGGTGGGTGAG #rat_gr227848_libT3S1 20 1 block37744 ---------------TCTCTTTACTCTCCCCATCCCCCTTCCTCCACTTCCCTGATGTTCTTTCCTGGCACACAAAATATAGGCCAATGAGCAGTGGGTGGGTGAGGAGGATGTGAGAACAAATTTGAGA------------------- humanZ1p6 -----------------------------------------CTCCACTTCCCTGCTGTTCTTTCTTGGCACACAAAATATAGGCCAATGAGCAGTGGGTGGGTGAG------------------------------------------- mouseZ6p6 AGTTGGCCCTTACCATCTCTTTACTCTCCCCATCCCCCTCCCTCCACTTCCCTGATGTTCTTTCCTGGCATACAAAATATAGGCCAATGAGCAGTGGGTGGGTGAGGAGGATGTGAGAACAAATTTGAGAAGTAAAAAAGGGAGCAACT ************* ********* ***** *********************************** block37744 ((((.....((((..(((((....((((.((((..(((..(((((.....((((.............))))..)))))..)))..))))))))))))).))))........)))) 1.000 -36.24 # humanZ1p6 ...((((..((..((((((....(((((.............))))).))))))..))..)))).. 1.000 -27.12 # mouseZ6p6 (((((.(((((((..((((.....((((..(((((.((((..((((...(((...(((((.....((((.............))))..)))))..))))))).)))).))))).))))........)))).)))....))))..))))) 0.986 -47.34 # #block37744 chromosome:10:82543960:82544074:-1 intergenic #humanZ1p6 chromosome:17:46691211:46691365:1 Opposite_strand|Intronic_non-coding|ENST00000405860|ENSG00000011258|protein_coding|MBT domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q05BQ5] #mouseZ6p6 chromosome:11:93748534:93748682:-1 Opposite_strand|Intronic_non-coding|ENSMUST00000063718|ENSMUSG00000059474|protein_coding|mbt domain containing 1 Gene [Source:MGI (curated);Acc:Mbtd1-009] ## Opposite_strand|Boundary_non-coding|ENSMUST00000107852|ENSMUSG00000059474|protein_coding|mbt domain containing 1 Gene [Source:MGI (curated);Acc:Mbtd1-009] ========== block37870 [novel_randfoldOK] ========== #randfold block37870: 0.002 #forester #identity: 0.00 block37870 GCTCTTGGCTTCTGGCTCACTC #rat_gr570832_libT1S1 22 1 block37870 gtaaggaagaccttgagctaataagagccaagaggtccaggctgctgccGCTCTTGGCTTCTGGCTCACTCgcacttgc ******************************************************************************* block37870 (((((...((...(((((((....((((((((((.....(((....))).)))))))))).))))))).))...))))) 0.990 -33.30 # #block37870 chromosome:10:82766221:82766299:-1 intergenic ========== block38544 [novel_randfoldOK] ========== #randfold block38544: 0.001 randfold humanZ2p6_block38544: 0.025 #forester humanZ2p6_block38544: 0.507861 #identity: 79.55 block38544 TGGGAACAGA----AGTGGGGGGG #rat_gr1021604_libT1S1 20 1 block38544 GGGAAGGAGGGACAAGGAAATGAATGAGGTTATGGGAACAGA----AGTGGGGGGGTCTCTCCCTTAGCACCTTTTCCCATTCTAGTAGCTTCTCTCTCCCTGTAACCCTTCCC humanZ2p6 --------------------------------TGGGAACAGAGTAGGGAGGGGGGTCCTAGCCCTCAGCATCTCTTCCCA---------------------------------- ********** * ****** ** **** **** ** ****** block38544 ----------------------------------------------- ------------------------------------------------------------------------- #ENSRNOT00000006875 ENSRNOG00000004686 Spop block38544 (((((((....(((.(((...((..(((((((((((((.((. .((..(((((....)))))..))..)).))))))......)))))))..))))).)))...))))))) 1.000 -41.70 # humanZ2p6 .(((((.(((((((((..(((...)))..))))..)).))).))))). 1.000 -20.10 # #block38544 chromosome:10:84017340:84017449:-1 Opposite_strand|Intronic_coding|ENSRNOT00000006875|ENSRNOG00000004686 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000006230|ENSRNOG00000004686 ## ENSRNOG00000004686|protein_coding|Spop|Spop protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5BJL3] #humanZ2p6 chromosome:17:45201020:45201169:1 intergenic ========== block39076 [novel_randfoldOK] ========== #randfold block39076: 0.009 #forester #identity: 0.00 block39076 TCCTCACACTGTCTCCCCAGG #rat_gr871449_libT2S2 21 1 block39076 gagaaggtctcttggaagaccagaagagggtacagagtttgtggagtgcgaaagctcttacccctacaaattcTCCTCACACTGTCTCCCCAGGtctgcccctc ******************************************************************************************************** block39076 (((..(((..(((((.(((.(((..((((....(((((((((((((.((....)).)).....)))))))))))))))...))))))..)))))...))).))) 0.990 -36.40 # #block39076 chromosome:10:84940752:84940855:-1 intergenic ========== block39297 [novel_randfoldOK] ========== #randfold block39297: 0.001 randfold human137p6_block39297: 0.017 #forester human137p6_block39297: 0.351117 #identity: 78.85 block39297 TAAGCCTCAAGGGGACACGAC #rat_gr723570_libT2S1 21 1 block39297 CGAGGCTCAGCTCTTCTTGCATTCCGGTATTTGTGTTCTCACGAGGCTCTTAGTGCAGTGTCAGTGCTAAGCCTCAAGGGGACACGACCACCAGAGAGTCCTACTTTGAGAATTGCCTCT human137p6 --------AACTGTTCCCAGACG-----------------AGGAGGCTCTTAGCGC----------CTAAGCCTCAAGGGGA-------------------------GAGAC-------- * ** *** * * *********** ** **************** **** block39297 .(((((....(((.....((.(((.(((..((((((((((..((((((..((((((.......))))))))))))..))))))))))..))).))).))........)))....))))). 0.700 -46.62 # human137p6 ..((.(((((....( (((((((.......)) ))...))))..))))) .)).. 1.000 -18.90 # #block39297 chromosome:10:85390641:85390760:-1 intergenic #human137p6 chromosome:12:113248878:113249037:-1 intergenic ========== block39865 [novel_randfoldOK] ========== #randfold block39865: 0.002 #forester #identity: 0.00 block39865 TCCAGTCTGGATACCTTGCAG #rat_gr833898_libT1S1 21 1 block39865 aggcagaagagccagctagtacTCCAGTCTGGATACCTTGCAGgggtcctgcacagggcagactgacttttgcgtgggtccaggagtcaaagggagaggctgacttggttctggcct ********************************************************************************************************************* block39865 ((((...((((((((.((((.((((..(((((((.((.((((((((((((((.....))))...)))))))))).)))))))))........))))..)))).)).)))))).)))) 0.880 -52.40 # #block39865 chromosome:10:86257015:86257131:-1 intergenic ========== block40790 [novel_randfoldOK] ========== #randfold block40790: 0.006 #forester #identity: 0.00 block40790 GCTCTGGTCCTCCGATTTCTTCA #rat_gr570588_libT2S1 23 3 block40790 aggtggcacactatagatggaaggacactgagggctctcacctgggccaggctgttcgtccaGCTCTGGTCCTCCGATTTCTTCAtccacctgacgtctcagttccctacct **************************************************************************************************************** block40790 <<<<<<<<<<<<<<<----------------------------------------------------------------------------------------------------------- #ENSRNOT00000011509 ENSRNOG00000008525 Csf3 block40790 ((((((...(((..(((((..(((....((((((...((....(((((((((((......)))).)))))))...))..))))))....)))..))))).)))...)))))) 0.910 -41.60 # #block40790 chromosome:10:87474493:87474604:-1 Opposite_strand|Intronic_coding|ENSRNOT00000011509|ENSRNOG00000008525 ## ENSRNOG00000008525|protein_coding|Csf3|colony stimulating factor 3 [Source:RefSeq_peptide;Acc:NP_058800] ========== block40843 [novel_randfoldOK] ========== #randfold block40843: 0.001 randfold mouse151p6_block40843: 0.008 #forester mouse151p6_block40843: 0.340318 #identity: 64.81 block40843 ACCAAGATAAAGACTCCCAGA #rat_gr87513_libT2S2 21 3 block40843 ACCAAGATAAAGACTCCCAG #rat_gr87512_libT3S1 20 1 block40843 CTGAGCCTTCTCTAGAAGACGCTAAGGTCTGAGAGTCCAGATCTGGGGTGAATGAAATTATTGCACCAAGATAAAGACTCCCAGACCTCACTCTTCACGAGCTCTAGA mouse151p6 CCAAGACTGATTT-------------TTCTGGTGACTCACGTGT-------------------CACCAAGATAAAGACT----------------------GTCCTGA * ** ** * * **** ** * * **************** ** ** block40843 ---------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000012340 ENSRNOG00000009066 Thra_v2 block40843 ---------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000045939 ENSRNOG00000009066 Thra_v2 block40843 ((((((....((..(((((.....(((((((.(((((...((((..((((((((....)))).)))).))))...))))).)))))))...)))))..)))))).)). 0.930 -38.60 # mouse151p6 .((.(((...((( .(((((((((......)) ))))).)).))).... ))).)). 0.999 -17.30 # #block40843 chromosome:10:87532364:87532471:-1 Opposite_strand|Intronic_coding|ENSRNOT00000045939|ENSRNOG00000009066 ## ENSRNOG00000009066|protein_coding|Thra_v2|Thyroid hormone receptor alpha (Nuclear receptor subfamily 1 group A member 1) (C-erbA-alpha) (c-erbA-1). [Source:UniProtKB/Swiss-Prot;Acc:P63059] #mouse151p6 chromosome:10:95311086:95311233:1 intergenic ========== block40887 [novel_randfoldOK] ========== #randfold block40887: 0.001 #forester #identity: 0.00 block40887 TCAGGACTCTTACTGCTCCCCT #rat_gr818951_libT1S2 22 1 block40887 gtaggtggatgaaaaggagccgttgtggtggcctgaaggttcagcacactgctgtgcactTCAGGACTCTTACTGCTCCCCTtcgcccatctcctgcc ************************************************************************************************** block40887 ((((((((.((((..(((((....((((.(((((((((((.((((.....)))).)).))))))).)).)))).)))))..)))).)))...))))). 1.000 -43.10 # #block40887 chromosome:10:87566224:87566321:-1 intergenic ========== block41546 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block41546: 0.002 #forester #identity: 0.00 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT1S1 18 167 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT1S2 18 98 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT4S2 18 82 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT4S1 18 72 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT3S1 18 46 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT5S1 18 45 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT5S2 18 25 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT3S2 18 23 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT2S1 18 13 block41546 TGGAGAGCCCTTACTGGA #rat_gr997342_libT2S2 18 11 block41546 TGGAGAGCCCTTACTGGACAGA #rat_gr997345_libT3S1 22 1 block41546 TGGAGAGCCCTTACTGGACAG #rat_gr997344_libT1S1 21 1 block41546 TGGAGAGCCCTTACTGGACAG #rat_gr997344_libT2S2 21 1 block41546 TGGAGAGCCCTTACTGGACAG #rat_gr997344_libT5S1 21 1 block41546 TGGAGAGCCCTTACTGGACAG #rat_gr997344_libT5S2 21 1 block41546 TGGAGAGCCCTTACTGGAC #rat_gr997343_libT1S1 19 1 block41546 TGGAGAGCCCTTACTGGAC #rat_gr997343_libT5S2 19 1 block41546 gggttctggagaccaagggctctgtctaggcatgcaagaggcagccagctgtgagctgagcccacgtaggctggtatagtgcgtctcTGGAGAGCCCTTACTGGAcagagccc ***************************************************************************************************************** block41546 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000019037 ENSRNOG00000014099 Ka15 block41546 ((((((((....((((((((((..((((((.(((((.....(((((.((.(((.((...)).))))).)))))......))))).)))))))))))))...))).)))))))) 0.990 -54.20 # #block41546 chromosome:10:89074564:89074676:-1 Same_strand|Intronic_coding|ENSRNOT00000019037|ENSRNOG00000014099 ## ENSRNOG00000014099|protein_coding|Ka15|Keratin, type I cytoskeletal 15 (Cytokeratin-15) (CK-15) (Keratin-15) (K15) (Type I keratin Ka15). [Source:UniProtKB/Swiss-Prot;Acc:Q6IFV3] ========== block41960 [novel_randfoldOK] ========== #randfold block41960: 0.003 #forester #identity: 0.00 block41960 ACAGGATTGGTCATAAGGCC #rat_gr80215_libT1S2 20 1 block41960 gagggtttttttgataggactgcatcaggactcagacccatctttttgtcctctccctgatgaggaacACAGGATTGGTCATAAGGCCtatgctacagcccattactccctc **************************************************************************************************************** block41960 (((((......((((.((...((((.(((.((..((((.(((((....(((((........)))))....))))).))))...)).))))))).....)).))))..))))) 0.990 -36.10 # #block41960 chromosome:10:89652196:89652307:-1 intergenic ========== block42285 [novel_randfoldOK] ========== #randfold block42285: 0.006 randfold mouseZ15p6_block42285: 0.009 #forester mouseZ15p6_block42285: 0.551308 #identity: 87.67 block42285 ATGGTAGGTGGGAGGAGACAC #rat_gr235166_libT4S2 21 1 block42285 TCATCCTAATGGCTGATCCCTGCTTCCTGTCTAATTATGGTGGGCATGAATACCAAGCACACTTTACATGGTAGGTGGGAGGAGACACAGCCCAGGAGA mouseZ15p6 ---------------ATCCCTGCTTCCTGTCTAGTTATGGTGAGCATGAATACCAAGCGCATGCTACGTGGTAGGTGGGAAGAGGCAC----------- ****************** ******** *************** ** *** ************ *** *** block42285 ------------------------------------------------------------------------------------------------------------- #ENSRNOT00000055238 ENSRNOG00000036814 Atp6v0a1 block42285 ------------------------------------------------------------------------------------------------------------- #ENSRNOT00000055237 ENSRNOG00000036814 Atp6v0a1 block42285 ...((((...(((((.(((((.((.((((.(((.....((((.((.((.....)).)).)))).....))))))).)).))).))..))))).)))).. 1.000 -33.60 # mouseZ15p6 ...(((.(((((..((((.(((((...((((((...........)))))).)))))))))..))))))))... 0.999 -27.60 # #block42285 chromosome:10:90067952:90068050:-1 Opposite_strand|Intronic_coding|ENSRNOT00000055238|ENSRNOG00000036814 ## ENSRNOG00000036814|protein_coding|Atp6v0a1|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] #mouseZ15p6 chromosome:11:100919673:100919811:-1 Opposite_strand|Intronic_coding|ENSMUST00000044721|ENSMUSG00000019302|protein_coding|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] ## Opposite_strand|Boundary_non-coding|ENSMUST00000100436|ENSMUSG00000019302|protein_coding|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] ========== block43073 [novel_mirtron_randfoldOK] ========== #randfold block43073: 0.004 #forester #identity: 0.00 block43073 TCTCACCGCCCCTCCCCCCAGC #rat_gr895697_libT1S2 22 2 block43073 CTCACCGCCCCTCCCCCCAG #rat_gr417716_libT1S1 20 2 block43073 TCTCACCGCCCCTCCCCCCAG #rat_gr895696_libT1S1 21 1 block43073 CTCACCGCCCCTCCCCCCA #rat_gr417715_libT1S1 19 1 block43073 TCTCACCGCCCCTCCCCC #rat_gr895694_libT1S2 18 1 block43073 tgttgggtgacttccatgggggtaggggtggcagggtctgggctggattttggtcttcttagcaTCTCACCGCCCCTCCCCCCAGCtatgcagca *********************************************************************************************** block43073 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000028310 ENSRNOG00000020850 Mpp2 block43073 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000055190 ENSRNOG00000020850 Mpp2 block43073 .((((.(((.......((((((.((((((((..(((((((((..((((....)))).))))).))))..)))))))).))))))..))).)))). 0.400 -45.20 # #block43073 chromosome:10:91149184:91149278:-1 Same_strand|Boundary_coding|ENSRNOT00000028310|ENSRNOG00000020850 ## ENSRNOG00000020850|protein_coding|Mpp2|Dlg 2 (Fragment). [Source:UniProtKB/TrEMBL;Acc:O88953] ========== block43164 [novel_mirtron_randfoldOK] ========== #randfold block43164: 0.001 #forester #identity: 0.00 block43164 CGCCTGTCCCTCTTGCGTAG #rat_gr393720_libT1S1 20 4 block43164 CGCCTGTCCCTCTTGCGTAG #rat_gr393720_libT1S2 20 2 block43164 CGCCTGTCCCTCTTGCGTAG #rat_gr393720_libT3S1 20 1 block43164 CGCCTGTCCCTCTTGCGTAG #rat_gr393720_libT4S1 20 1 block43164 CGCCTGTCCCTCTTGCGTAG #rat_gr393720_libT4S2 20 1 block43164 ggctcatacctcaacctgcccagggggcagagcttatgggagcaggctatgtctgctctccctgaaccCGCCTGTCCCTCTTGCGTAGgcaaacactggagct ******************************************************************************************************* block43164 ----------------------------------------------------------------------------------------------------------------- #ENSRNOT00000028375 ENSRNOG00000020902 G6pc3 block43164 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000028381 ENSRNOG00000020905 Hdac5 block43164 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000055188 ENSRNOG00000020905 Hdac5 block43164 (((((.........(((((.((((((((((.(((((.((((((((((...)))))))).)).)))....))))))))))..)).))))).........))))) 0.990 -44.27 # #block43164 chromosome:10:91266878:91266980:-1 Opposite_strand|Intronic_non-coding|ENSRNOT00000028375|ENSRNOG00000020902 ## Same_strand|Intronic_coding|ENSRNOT00000055188|ENSRNOG00000020905 ## Same_strand|Boundary_non-coding|ENSRNOT00000055187|ENSRNOG00000020905 ## ENSRNOG00000020905|protein_coding|Hdac5|Hdac5 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q5RJZ2] ## ENSRNOG00000020902|protein_coding|G6pc3|glucose 6 phosphatase, catalytic, 3 [Source:RefSeq_peptide;Acc:NP_788266] ========== block43684 [novel_mirtron_randfoldOK] ========== #randfold block43684: 0.001 #forester #identity: 0.00 block43684 TGTACTGTGTTCCCTGTCCCA #rat_gr1075758_libT1S1 21 3 block43684 TGTACTGTGTTCCCTGTCCCAG #rat_gr1075759_libT1S1 22 1 block43684 TGTACTGTGTTCCCTGTCCC #rat_gr1075757_libT1S2 20 1 block43684 tctggaggttcggatagggatccaagagtcctcaggaaaacctaaagccTGTACTGTGTTCCCTGTCCCAGgctccaagat ********************************************************************************* block43684 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000034401 ENSRNOG00000002919 Gfap block43684 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000003948 ENSRNOG00000002919 Gfap block43684 (((((((.((.(((((((((..((..(((...((((...........)))).))).)).))))))))).)).))))).)). 1.000 -31.50 # #block43684 chromosome:10:92067241:92067321:-1 Same_strand|Intronic_coding|ENSRNOT00000034401|ENSRNOG00000002919 ## ENSRNOG00000002919|protein_coding|Gfap|Glial fibrillary acidic protein (GFAP). [Source:UniProtKB/Swiss-Prot;Acc:P47819] ========== block45515 [novel_randfoldOK] ========== #randfold block45515: 0.002 randfold mouse286p6_block45515: 0.008 #forester mouse286p6_block45515: 0.353272 #identity: 85.71 block45515 AAGGCAGGAGGGGCCTGGGTAT #rat_gr50668_libT3S2 22 1 block45515 CCTCATGATAAAGGCAGGAGGGGCCTGGGTATGGGATTCCCAGTACCCCTGCCTTACTTCTGCCTCTCCAGTACAGGG mouse286p6 ----------AAGGCAGGAGGGGGCTGGGT------TTCC-----TCTCTGCT---CCTTTGCCTC------------ ************* ****** **** * **** * * ****** block45515 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000015976 ENSRNOG00000011917 Cd79b block45515 (((..((....(((((((((((((..(((((((((...)))).)))))..))))..)))))))))...))....))). 0.920 -34.50 # mouse286p6 .(((((..(((((((.(((. .... .))).))) ))))))))). 1.000 -19.30 # #block45515 chromosome:10:95705633:95705710:-1 Same_strand|Intronic_coding|ENSRNOT00000015976|ENSRNOG00000011917 ## ENSRNOG00000011917|protein_coding|Cd79b|CD79B antigen [Source:RefSeq_peptide;Acc:NP_598217] #mouse286p6 chromosome:15:73979467:73979584:1 intergenic ========== block45598 [novel_randfoldOK] ========== #randfold block45598: 0.004 #forester #identity: 0.00 block45598 TGCCAGCCCTCCAGCTCACCA #rat_gr964559_libT1S2 21 1 block45598 gccacaactgtccctttagggaacaatggttgagaggatgtgctgcaggacctagggaaactccTGCCAGCCCTCCAGCTCACCAtatcccttccccacagcctcgaggca *************************************************************************************************************** block45598 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000017371 ENSRNOG00000012864 RGD1559716_predicted block45598 (((....((((......(((((...((((.((((.(((...((((((((.....((....))))))).)))..)))..)))))))).))))).....))))......))). 0.850 -38.70 # #block45598 chromosome:10:95815230:95815340:-1 Same_strand|Intronic_coding|ENSRNOT00000017371|ENSRNOG00000012864 ## ENSRNOG00000012864|protein_coding|RGD1559716_predicted| ========== block48792 [novel_randfoldOK] ========== #randfold block48792: 0.004 #forester #identity: 0.00 block48792 CGCGGTGCCTCTGCGCATCCAG #rat_gr394727_libT1S1 22 1 block48792 CGCGGTGCCTCTGCGCATCCAG #rat_gr394727_libT1S2 22 1 block48792 CGCGGTGCCTCTGCGCATCC #rat_gr394726_libT1S1 20 1 block48792 TCGCGGTGCCTCTGCGCATCC #rat_gr889300_libT1S1 21 1 block48792 TCGCGGTGCCTCTGCGCA #rat_gr889299_libT1S2 18 1 block48792 aaggccagaatggcccaagggcgcgcagagcccagtagtgccgcggaaagtgtttgcttcTCGCGGTGCCTCTGCGCATCCAGagctttgctgcct ************************************************************************************************ block48792 .(((.(((...(((....((..((((((((.......((((((((..((((....))))..))))))))))))))))..))...)))...)))))) 0.670 -46.01 # #block48792 chromosome:10:102816653:102816748:-1 intergenic ========== block50103 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block50103: 0.007 #forester #identity: 0.00 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT1S2 18 2 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT3S2 18 2 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT5S2 18 2 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT1S1 18 1 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT2S2 18 1 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT3S1 18 1 block50103 GCAGGGGTGGTTCAGTGG #rat_gr535627_libT4S2 18 1 block50103 gctgggccagcatagttgaggttcccctgggctctgatcctgctggggccagcatagttaaggttccccagggtgcagggagcagggtGCAGGGGTGGTTCAGTGGcaggcctgc ******************************************************************************************************************* block50103 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004718 ENSRNOG00000003464 RGD1311422_predicted block50103 ((.(((((.((...((((((...((((((.((((((.(((((((((((((...........))..)))))....))))))..)))))).))))))...)))))).)).))))))) 0.970 -55.30 # #block50103 chromosome:10:105437065:105437179:-1 Same_strand|Intronic_coding|ENSRNOT00000004718|ENSRNOG00000003464 ## ENSRNOG00000003464|protein_coding|RGD1311422_predicted| ## {Repeats: trf 1 7 0 class=trf} ========== block52216 [novel_randfoldOK] ========== #randfold block52216: 0.001 #forester #identity: 0.00 block52216 GCCACAGAAGGAAACAGGAA #rat_gr541742_libT1S1 20 1 block52216 gagaggtaatgcaaaaaggtcaggcaGCCACAGAAGGAAACAGGAAagggtcgtgcaagcccacctcccccctgtctccttgtggctgcatctaagtatgttctt ********************************************************************************************************* block52216 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004524 ENSRNOG00000003386 D11Bwg0517e block52216 (((((...((((....((((...(((((((((..((((.(((((...(((..(((......)))..))).))))).)))))))))))))))))..)))).))))) 0.990 -41.40 # #block52216 chromosome:10:108518224:108518328:-1 Same_strand|Intronic_non-coding|ENSRNOT00000004524|ENSRNOG00000003386 ## Same_strand|Boundary_non-coding|ENSRNOT00000006295|ENSRNOG00000003386 ## ENSRNOG00000003386|protein_coding|D11Bwg0517e|Fox-1 homolog C [Source:UniProtKB/Swiss-Prot;Acc:Q8BIF2] ========== block52622 [novel_randfoldOK] ========== #randfold block52622: 0.002 #forester #identity: 0.00 block52622 CAACCCTGGTCAGGGAACAG #rat_gr264936_libT1S1 20 1 block52622 tctcagagccttgtttCAACCCTGGTCAGGGAACAGgggagagcggaacactaagggtcctcttacctagaggtgattgctgcccctgcctggcacaggaagaagcttttatttgag ********************************************************************************************************************* block52622 .((((((.....(((((...((((((((((...((((((..(((((.((.((..((((......))))..))))..))))).)))))))))))).))))..))))).....)))))) 0.960 -48.30 # #block52622 chromosome:10:109457955:109458071:-1 intergenic ========== block52990 [novel_randfoldOK] ========== #randfold block52990: 0.004 #forester #identity: 0.00 block52990 TAGTCACTGACGGGGTGGAC #rat_gr785220_libT3S1 20 1 block52990 ccccaccactgtggagctgtctggtcatggttcTAGTCACTGACGGGGTGGACctacttggctcctacctcttccctgcctgaaccagcctgcaccagttcccttgggga ************************************************************************************************************** block52990 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000054970 ENSRNOG00000036697 Mafg block52990 (((((.......(((((((...(((..((((((.((.((..((.((((((((((.....)).))).))))).))..)).))))))))))).....)))))))..))))). 0.990 -43.60 # #block52990 chromosome:10:109930580:109930689:-1 Same_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Same_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781] ========== block55934 [novel_randfoldOK] ========== #randfold block55934: 0.001 #forester #identity: 0.00 block55934 ACACCCAGGCCCTTCCTCCA #rat_gr74094_libT2S1 20 1 block55934 atagtggaaccagactccattccagcagACACCCAGGCCCTTCCTCCAacactgccaggtaggaagctggagagaaggccctgggtctgaccctgggagcactggcagtctgctg ******************************************************************************************************************* block55934 .(((..((.((((.((((.......((((..((((((.((((((((((...((((...)))).....))))).))))).))))))))))......))))..))))...))..))) 0.940 -51.62 # #block55934 chromosome:10:5171896:5172010:1 intergenic ========== block56815 [novel_randfoldOK] ========== #randfold block56815: 0.001 randfold mouseZ6p7_block56815: 0.003 #forester mouseZ6p7_block56815: 0.520735 #identity: 80.23 block56815 TTACTCCTGAACCCCTGAATGA #rat_gr1101917_libT4S2 22 1 block56815 GTAATTATATCTTGGCAGAGTGGGGGTAGGGAGTAACAGTATCAGTTTAGGTGTTGTTACTCCTGAACCCCTGAATGAACCAGTCTTATTCTTTATG mouseZ6p7 ---ATTATACATTGGCAGAATGAGAGTAGGAGGTAACAGCATCAGTTTAGGTGTAGTTACTCCTGCA-CCCTCACTGGGTCAGTCATAGT------- ****** ******** ** * ***** ******* ************** ********** * **** * ** ***** ** * block56815 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000050277 ENSRNOG00000025496 Usp7 block56815 ((((..(((..((((((...(((((((.(((((((((((((((......)))))))))))))))..)))))))..))..))))...)))...)))). 0.950 -34.00 # mouseZ6p7 (((((..((((((....((((.((((((.(((((.(((((......))))).))))))))))). ..))))....)))))).))))) 0.829 -29.00 # #block56815 chromosome:10:6921366:6921462:1 Same_strand|Intronic_coding|ENSRNOT00000050277|ENSRNOG00000025496 ## Same_strand|Boundary_non-coding|ENSRNOT00000046232|ENSRNOG00000025496 ## ENSRNOG00000025496|protein_coding|Usp7|Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7) (Deubiquitinating enzyme 7) (Herpesvirus-associated ubiquitin-specific protease) (rHAUSP). [Source:UniProtKB/Swiss-Prot;Acc:Q4VSI4] #mouseZ6p7 chromosome:16:8734820:8734905:-1 Same_strand|Intronic_coding|ENSMUST00000115836|ENSMUSG00000022710|protein_coding|ubiquitin specific peptidase 7 Gene [Source:MGI Symbol;Acc:MGI:2182061] ========== block56843 [novel_randfoldOK] ========== #randfold block56843: 0.010 #forester #identity: 0.00 block56843 ACTCTGCTTTTGTTGGTGTG #rat_gr120478_libT5S1 20 1 block56843 tcagtgcatacccaACTCTGCTTTTGTTGGTGTGtattgtagaccaataaacaagtttatttgtgtgctg ********************************************************************** block56843 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000050277 ENSRNOG00000025496 Usp7 block56843 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046232 ENSRNOG00000025496 Usp7 block56843 .(((..((((...((((.((..(((((((((.((.....)).)))))))))))))))....))))..))) 0.500 -19.60 # #block56843 chromosome:10:6960224:6960293:1 Same_strand|Intronic_non-coding|ENSRNOT00000050277|ENSRNOG00000025496 ## Same_strand|Intronic_coding|ENSRNOT00000046232|ENSRNOG00000025496 ## ENSRNOG00000025496|protein_coding|Usp7|Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15) (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing protease 7) (Deubiquitinating enzyme 7) (Herpesvirus-associated ubiquitin-specific protease) (rHAUSP). [Source:UniProtKB/Swiss-Prot;Acc:Q4VSI4] ========== block57878 [novel_randfoldOK] ========== #randfold block57878: 0.001 #forester #identity: 0.00 block57878 CATGTGCGGGTGTGTGTATG #rat_gr313644_libT2S2 20 2 block57878 agtgaacagaacaaatcccaattcaacatcattctgtgccCATGTGCGGGTGTGTGTATGtgtgtgcactcacacacacttgcacatgtgcttgtgtatgttgatgaacatctgtatgcg ************************************************************************************************************************ block57878 .(((.(((((.....((.....((((((((((.....((.(((((((((((((((((..(((....)))..))))))))))))))))).))..))).))))))).))...))))).))). 0.970 -49.50 # #block57878 chromosome:10:10045221:10045340:1 intergenic ## {Repeats: dust 10045291 10045311 0 class=dust} ========== block59445 [novel_randfoldOK] ========== #randfold block59445: 0.009 #forester #identity: 0.00 block59445 TGGGTGTTGGAACCCAGGGT #rat_gr1059412_libT2S1 20 1 block59445 tctcgatatcacggtgtTGGGTGTTGGAACCCAGGGTgtggtgtactcatcactcctgggtatgggttttggtactttttggaagagaa ***************************************************************************************** block59445 ((((....((.(((....(((((..(((((((((((.((((((....)))))).))).....))))))))..))))).))))).)))). 0.630 -31.30 # #block59445 chromosome:10:12952512:12952600:1 intergenic ========== block60051 [novel_randfoldOK] ========== #randfold block60051: 0.001 #forester #identity: 0.00 block60051 TGGGGTGGGGTTTTTGTTTGT #rat_gr1053577_libT4S2 21 1 block60051 actgcttctgcctgtcaagtgctgggactaaacgtgagtgccaccatgcccagctgttTGGGGTGGGGTTTTTGTTTGTttgtttctatactttttgagacaggtagacatgtagta ********************************************************************************************************************* block60051 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000015092 ENSRNOG00000010771 Q9ERV0_RAT block60051 (((((.(((((((((((((((..(((((.(((((.(((.(((.((((.(((((....)))))))))))).)))...))))))))))..))))).....))))))))))...))))). 1.000 -45.90 # #block60051 chromosome:10:13804052:13804168:1 Same_strand|Intronic_coding|ENSRNOT00000015092|ENSRNOG00000010771 ## ENSRNOG00000010771|protein_coding|Q9ERV0_RAT|Pkd1 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q9ERV0] ========== block61058 [novel_randfoldOK] ========== #randfold block61058: 0.001 randfold mouseZ14p7_block61058: 0.001 #forester mouseZ14p7_block61058: 0.803376 #identity: 98.33 block61058 CTGGTCCCTAATGCATCCCCTGT #rat_gr452080_libT1S2 23 1 block61058 TGTATGACATGCGTGGATGCATCAGGGGCCAGGCTGGGCAAAAGAGAGGCCTGGTCCCTAATGCATCCCCTGTAAGGCAG mouseZ14p7 ----------GCGTGGATGCATC--GGGCCAGGCTGGGCAAAAGAGAGGCCTGGTCCCTAATGCATCCTCTG-------- ************* ******************************************* *** block61058 (((...(((.....((((((((.((((((((((((............)))))))))))).))))))))..)))...))). 0.860 -40.50 # mouseZ14p7 ....((((((((. ((((((((((............))))))))))...)))))))).... 1.000 -31.00 # #block61058 chromosome:10:15402857:15402936:1 intergenic #mouseZ14p7 chromosome:17:26269161:26269280:1 intergenic ========== block62139 [novel_randfoldOK] ========== #randfold block62139: 0.002 #forester #identity: 0.00 block62139 AGTGTTGGAAAACATCCCTCAG #rat_gr202076_libT2S1 22 1 block62139 ttcagtaattcctcacAGTGTTGGAAAACATCCCTCAGagccattttgcttctcagcagccagctctcaggggtgtccccattaccctgcttcgcacagctga ******************************************************************************************************* block62139 ----------------------------------------------------------------------------------------------------------------- #ENSRNOT00000049840 ENSRNOG00000029838 block62139 .(((((.........(((.(((((...((((((((.(((((....(((((....)))))...))))).))))))))..)))..)).))).........))))) 0.440 -32.97 # #block62139 chromosome:10:17480011:17480113:1 Opposite_strand|Intronic_coding|ENSRNOT00000049840|ENSRNOG00000029838 ## ENSRNOG00000029838|protein_coding|| ========== block63721 [novel_randfoldOK] ========== #randfold block63721: 0.005 #forester #identity: 0.00 block63721 TGTGCCACAGTGACACCCAG #rat_gr1085378_libT2S1 20 1 block63721 ccttacttagctgtcaatagtcccagacttgTGTGCCACAGTGACACCCAGtgcgccatattttgggtcaggctgtggacataatagtgtggacacaacagtaagaag ************************************************************************************************************ block63721 ---------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000011922 ENSRNOG00000027341 Odz2 block63721 .(((.(((.(((((.....((.(((.(((..(((((((((((...((((((...........))))))...))))))).))))..))).)))))...))))))))))) 0.960 -36.40 # #block63721 chromosome:10:21418868:21418975:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000037859|ENSRNOG00000027341 ## Opposite_strand|Intronic_coding|ENSRNOT00000011922|ENSRNOG00000027341 ## ENSRNOG00000027341|protein_coding|Odz2|Teneurin-2 (Ten-2) (Tenascin-M2) (Ten-m2) (Protein Odd Oz/ten-m homolog 2) (Neurestin). [Source:UniProtKB/Swiss-Prot;Acc:Q9R1K2] ========== block65268 [novel_randfoldOK] ========== #randfold block65268: 0.001 #forester #identity: 0.00 block65268 CAAAGGTTAAAGCAAGAAGA #rat_gr258695_libT5S2 20 1 block65268 tgaaactcCAAAGGTTAAAGCAAGAAGAtaaatcttcatgctttaatgctttcattttttaa ************************************************************** block65268 (((((....(((((((((((((.(((((....))))).))))))))).))))....))))). 0.990 -16.70 # #block65268 chromosome:10:26272939:26273000:1 intergenic ========== block66652 [novel_randfoldOK] ========== #randfold block66652: 0.001 #forester #identity: 0.00 block66652 TAAGATATCAAGAGGAGGGT #rat_gr722494_libT3S1 20 1 block66652 gagcacattctctagcaaacccttccttcttgatatcaagatatcaaggatatcaagatatcttgatatcTAAGATATCAAGAGGAGGGTgaaggagcttggtggaggggtgtgactt ********************************************************************************************************************** block66652 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047970 ENSRNOG00000028845 Ebf1 block66652 ((((((((((((((.(((((((.(((.((((((((((.(((((((((.(((((....))))))))))))))..)))))))))))))))))........))).))))))).)))).))) 0.990 -51.30 # #block66652 chromosome:10:29937773:29937890:1 Same_strand|Intronic_coding|ENSRNOT00000047970|ENSRNOG00000028845 ## ENSRNOG00000028845|protein_coding|Ebf1|Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) (Olfactory neuronal transcription factor) (Olf-1). [Source:UniProtKB/Swiss-Prot;Acc:Q63398] ## {Repeats: trf 1 13 0 class=trf,trf 1 14 0 class=trf} ========== block69585 [novel_randfoldOK] ========== #randfold block69585: 0.001 randfold human255p7_block69585: 0.038 #forester human255p7_block69585: 0.318244 #identity: 61.90 block69585 GCTGAGACACACTGGGCAGTG #rat_gr571528_libT2S1 21 2 block69585 GCTGGACGGGGCTGCTTGCTTGCTGCCCAGTGTTTTCTAAAGGGCAAAGAGCTGAGACACACTGGGCAGTGCAAGCAGTCCAAGAAGC human255p7 CCT--------CTGC-CGCATGAAGCCCCAAGCCCAGTAATAAATGATGGGCTGAGACTCACTGGGCAGTCT---------------- ** **** ** ** **** * *** * * ******** *********** block69585 (((.....(((((((((((..((((((((((((..(((....(((.....))).))).)))))))))))))))))))))))....))) 1.000 -50.20 # human255p7 ... (((( (.(((((.......((((((...........)))))).....))).)))))))... 0.994 -19.70 # #block69585 chromosome:10:37375138:37375225:1 intergenic #human255p7 chromosome:15:90354942:90355069:1 Same_strand|Intronic_coding|ENST00000318445|ENSG00000176463|protein_coding|Solute carrier organic anion transporter family member 3A1 (Solute carrier family 21 member 11)(Sodium-independent organic anion transporter D)(Organic anion-transporting polypeptide D)(OATP-D)(Organic anion transporter polypeptide-related protein 3)(OATP-RP3)(OATPRP3)(PGE1 transporter) [Source:UniProtKB/Swiss-Prot;Acc:Q9UIG8] ========== block69636 [novel_randfoldOK] ========== #randfold block69636: 0.008 #forester #identity: 0.00 block69636 TGAGATCTTGGTCAGCAACAGG #rat_gr942202_libT1S1 22 1 block69636 ccaccccagtgctcagctatgtgttgcttacagatgctcaggtctttgagaccTGAGATCTTGGTCAGCAACAGGtcattctgcagccatgagcttttagacttgtggg ************************************************************************************************************* block69636 ((((...(((((((((((((.(((((((.((((((.((((((((.....))))))))))))..)).))))))).))........)))..)))))......))).)))). 0.490 -40.10 # #block69636 chromosome:10:37442114:37442222:1 intergenic ========== block70485 [novel_randfoldOK] ========== #randfold block70485: 0.001 randfold human276p7_block70485: 0.484 #forester human276p7_block70485: 0.430601 #identity: 72.58 block70485 CCCGCCGCCTCCGCAGCTTGAG #rat_gr356689_libT1S2 22 1 block70485 CATCCATCCAGGAATGTATCTGCCCGCCGCCTCCGCAGCTTGAGCAGTGATTCGGTGTTGCTCTCG--------CCCTCGGCTGCTGGAGGCGGCGCCCTGGGCCTTGCTGGATGTTTG human276p7 ----------------------CCCGCCGCCTCCGCAGCCCGCGCGCCGG---AGCATGAGTCCCGGCCGGAGCCCCACGGCCGC---GGGCGGCGCC--------------------- ***************** * ** * * * ** ** *** **** ** ********* block70485 ((..(((((((.((.((.......((((((((((((((((((((.((..((.....))..)))))) .....)))))).))))))))))......)).)).)))))))..)) 0.960 -55.62 # human276p7 ..((((((..((((.(((.((..((((( .((....)).)))))....)).....))).)) )))))))).. 0.225 -35.40 # #block70485 chromosome:10:38937288:38937398:1 intergenic #human276p7 chromosome:8:27547422:27547572:1 Same_strand|Boundary_non-coding|ENST00000301904|ENSG00000168077|protein_coding|Scavenger receptor class A member 3 (Cellular stress response gene protein) [Source:UniProtKB/Swiss-Prot;Acc:Q6AZY7] ## Same_strand|Exonic_non-coding|ENST00000337221|ENSG00000168077|protein_coding|Scavenger receptor class A member 3 (Cellular stress response gene protein) [Source:UniProtKB/Swiss-Prot;Acc:Q6AZY7] ## {SimpF: oe = 0.85 0 CpG, -1 Eponine, 1 Eponine, -1 Eponine,rank = 1 -1 FirstEF, -1 Eponine, -1 Eponine} ========== block71535 [novel_randfoldOK] ========== #randfold block71535: 0.004 #forester #identity: 0.00 block71535 GCCACCCCCACCCCCTCCCCC #rat_gr542186_libT1S1 21 1 block71535 gagtcaccagggagaagagactcttggtgggtggggcttggagaaagtttcaaaagctgactccttctcagaGCCACCCCCACCCCCTCCCCCtccgcctgtgcggctct ************************************************************************************************************** block71535 ------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000017486 ENSRNOG00000012840 Sparc block71535 (((((..(((((((..(((......((((((.(((((((.(((((((((.........))))..))))).))))).))))))))..)))...))))..)))...))))). 0.430 -44.00 # #block71535 chromosome:10:40829947:40830056:1 Opposite_strand|Intronic_non-coding|ENSRNOT00000017486|ENSRNOG00000012840 ## ENSRNOG00000012840|protein_coding|Sparc|SPARC precursor (Secreted protein acidic and rich in cysteine) (Osteonectin) (ON) (Basement-membrane protein 40) (BM-40). [Source:UniProtKB/Swiss-Prot;Acc:P16975] ## {Repeats: dust 40830023 40830039 0 class=dust} ========== block72173 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block72173: 0.007 #forester #identity: 0.00 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT5S2 18 18 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT1S2 18 10 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT1S1 18 5 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT5S1 18 5 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT3S1 18 4 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT3S2 18 4 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT4S2 18 4 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT2S1 18 2 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT2S2 18 2 block72173 TGTAAACATCCCCAGCTG #rat_gr1073336_libT4S1 18 2 block72173 TGTAAACATCCCCAGCTGT #rat_gr1073337_libT3S1 19 1 block72173 TGTAAACATCCCCAGCTGT #rat_gr1073337_libT3S2 19 1 block72173 TGTAAACATCCCCAGCTGT #rat_gr1073337_libT4S1 19 1 block72173 TGTAAACATCCCCAGCTGT #rat_gr1073337_libT5S1 19 1 block72173 atggtcacttctgagtgtgaggacagagggatgactctgggaagatgtttcagacTGTAAACATCCCCAGCTGttattgatggctgtcctacaggccataccatt ********************************************************************************************************* block72173 (((((......((.((.(((((((((...((((((.(((((..(((((((((...)).))))))))))))..)))))).....))))))).)).)))).))))). 0.470 -36.20 # #block72173 chromosome:10:42612178:42612282:1 intergenic ========== block72297 [novel_randfoldOK] ========== #randfold block72297: 0.010 randfold mouseZ1p8_block72297: 0.017 #forester mouseZ1p8_block72297: 0.3686 #identity: 86.90 block72297 ACCCCATGCGTGTGCCCTGT #rat_gr96741_libT3S2 20 1 block72297 ATGCGTGTGCCCTGTTTCCCTC #rat_gr231093_libT3S1 22 1 block72297 CATTTGCAAAACACCCCATGCGTGTGCCCTGTTTCCCTCCCCGCCTCACCCGTGTGCAGGGGATTGAATGGAGGGCCATGCACATGTTAAGCTAGTGG- mouseZ1p8 ------------ACCCCATGTGTGTGCCCTGTTCCCTTCCC--CCTTGCTCATGTGCAGGGGGTTGAATGGAGGGCCTTGTGCATGTTAAGCTAGTGGT ******** ************ ** **** *** * * ********** ************** ** **************** block72297 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000003447 ENSRNOG00000002488 Galnt10 block72297 ((((.((..((((.....((((((.(((((..(((..(((((((..((....)).)).)))))..)))...)))))))))))..))))..)).)))). 1.000 -37.40 # mouseZ1p8 ....((((..((.((((...(((.((((( ((((((......))))))))..))).)))))))..))..))))............. 0.871 -33.40 # #block72297 chromosome:10:43270957:43271054:1 Same_strand|Intronic_coding|ENSRNOT00000003447|ENSRNOG00000002488 ## ENSRNOG00000002488|protein_coding|Galnt10|Polypeptide N-acetylgalactosaminyltransferase 10 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 10) (UDP- GalNAc:polypeptide N-acetylgalactosaminyltransferase 10) (Polypeptide GalNAc transferase 10) (GalNAc-T10) (pp-GaNTase 10). [Source:UniProtKB/Swiss-Prot;Acc:Q925R7] #mouseZ1p8 chromosome:11:57492895:57493032:1 Same_strand|Intronic_coding|ENSMUST00000108846|ENSMUSG00000020520|protein_coding|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 Gene [Source:MGI (curated);Acc:Galnt10-001] ========== block72765 [novel_randfoldOK] ========== #randfold block72765: 0.005 #forester #identity: 0.00 block72765 AGACACAGGAGGTCATGTGAG #rat_gr137045_libT3S2 21 1 block72765 tcaagtctctctgatgctctcttgatttcctcttctgacctgacttctatctgtcgggcttttcccctcagggaacttggtctagaAGACACAGGAGGTCATGTGAGaatatgaa ******************************************************************************************************************* block72765 (((.((.((((..(((..((((((......((((((((((....((((..(((..(((.....)))..)))))))...)))).))))))..))))))..)))..)))))).))). 0.410 -36.30 # #block72765 chromosome:10:43982445:43982559:1 intergenic ========== block74683 [novel_randfoldOK] ========== #randfold block74683: 0.009 #forester #identity: 0.00 block74683 CCCTGAGAAAATCTGCCTGC #rat_gr361446_libT2S1 20 1 block74683 cagatagaatcttgcacacatagatgagcttgctggcaggggtctcggggagagacacagaagctggtctggagCCCTGAGAAAATCTGCCTGCttcctagctgtgctgagtggctgg ********************************************************************************************************************** block74683 -------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000032092 ENSRNOG00000002616 NP_001100477.1 block74683 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000027312 ENSRNOG00000027924 2310040C09Rik block74683 (((......((..(((((..(((..((((.....((((((..((((((((..((((.(((...)))))))....))))))))...)))))).)))).)))..))))).))....))). 0.930 -46.90 # #block74683 chromosome:10:47843738:47843855:1 Same_strand|Intronic_coding|ENSRNOT00000027312|ENSRNOG00000027924 ## Opposite_strand|Intronic_coding|ENSRNOT00000032092|ENSRNOG00000002616 ## ENSRNOG00000027924|protein_coding|2310040C09Rik|RIKEN cDNA 2310040C09 gene Gene [Source:MGI Symbol;Acc:MGI:1916890] ## ENSRNOG00000002616|protein_coding|NP_001100477.1|solute carrier family 5 (sodium/glucose cotransporter), member 10 [Source:RefSeq_peptide;Acc:NP_001100477] ========== block77082 [novel_randfoldOK] ========== #randfold block77082: 0.006 #forester #identity: 0.00 block77082 TTTTTTGTGTTCTGGGATTT #rat_gr1200927_libT2S1 20 1 block77082 gcagggattctgggacaaaaagtactctcattaaaggacttgtaTTTTTTGTGTTCTGGGATTTttagca ********************************************************************** block77082 ((((((((((..(((((((((((((..((.......))...))))))))..)))))..)))))))).)). 1.000 -21.50 # #block77082 chromosome:10:54274051:54274120:1 intergenic ## {Repeats: dust 54274136 54274156 0 class=dust} ========== block77086 [novel_randfoldOK] ========== #randfold block77086: 0.003 #forester #identity: 0.00 block77086 ATCAGATGCCTTTCATGTGCCT #rat_gr216093_libT5S1 22 1 block77086 ttcacatccatccccatggcttctgcacATCAGATGCCTTTCATGTGCCTtgcaagttctatgctgggcatcgtggagtgcgtctgtaatcccagcagtccagaggctgagataagtgag ************************************************************************************************************************ block77086 .(((((((((.((...(((((.(((.....(((((((.((((((((((((.(((.......))).))))).))))))).)))))))......))).)).)))..)).)).)))..)))). 0.990 -45.20 # #block77086 chromosome:10:54284853:54284972:1 intergenic ========== block78145 [novel_randfoldOK] ========== #randfold block78145: 0.001 #forester #identity: 0.00 block78145 GCGGGCAGCTGGGAACTGTAGT #rat_gr564623_libT1S2 22 1 block78145 ggggtggcgaggatggaaaaggaactgcagttcccggcagcccatgagcttcgggcagcgccgcGCGGGCAGCTGGGAACTGTAGTtctacgggcgtgctgccgaccct ************************************************************************************************************* block78145 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000013071 ENSRNOG00000009823 NP_001099264.1 block78145 ((((((((.((.(((.....((((((((((((((((((.((((.((.(((......)))....)).)))).)))))))))))))))))).....))).))))).))))) 0.460 -61.10 # #block78145 chromosome:10:56190553:56190661:1 Same_strand|Intronic_coding|ENSRNOT00000013071|ENSRNOG00000009823 ## ENSRNOG00000009823|protein_coding|NP_001099264.1| ========== block78156 [novel_randfoldOK] ========== #randfold block78156: 0.009 randfold mouseZ15p8_block78156: 0.020 #forester mouseZ15p8_block78156: 0.953308 #identity: 96.49 block78156 TGTGTGTGTGTTTGGACCACA #rat_gr1089804_libT2S1 21 1 block78156 CTCCCTTTTCATTTCTGAGTTGCATTTCCTGTCTTGAATACGTCACACTTGACATTTCAAGGTTTTGTGTGTGTGTTTGGACCACAGGAAACAAAGGCTATGAGGCGAGAATGAG mouseZ15p8 -----------------------------CGTCTTGAATATGTCACACTTGACATTTCAAGGTTTTGTGTGTGTGTTTGGACCACA----------------------------- ********** ********************************************* block78156 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000013592 ENSRNOG00000037613 NP_001102299.1 block78156 (((..(((((.((((..((((...((((((((.(((((((((.(((((..(((........)))..))))))))))))))...))))))))....))))..)))).))))).))) 0.900 -33.80 # mouseZ15p8 .(((.((((((((.(((((..(((........)))..)))))))))))))))).... 0.436 -15.70 # #block78156 chromosome:10:56194919:56195033:1 Opposite_strand|Intronic_coding|ENSRNOT00000013592|ENSRNOG00000037613 ## ENSRNOG00000037613|protein_coding|NP_001102299.1|jumonji domain containing 3 [Source:RefSeq_peptide;Acc:NP_001102299] #mouseZ15p8 chromosome:11:69213933:69214087:1 Opposite_strand|Intronic_coding|ENSMUST00000094077|ENSMUSG00000018476|protein_coding|jumonji domain containing 3 Gene [Source:MGI (curated);Acc:Jmjd3-001] ========== block78279 [novel_randfoldOK] ========== #randfold block78279: 0.007 #forester #identity: 0.00 block78279 CAGAAGCCGATAGGAGCAGCC #rat_gr286496_libT2S1 21 1 block78279 tgtgtggttcCAGAAGCCGATAGGAGCAGCCtaaataagacagaagagctgctccattcctgcttctctggaaatggtgtccctcacg **************************************************************************************** block78279 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046490 ENSRNOG00000010756 Tp53 block78279 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014279 ENSRNOG00000010756 Tp53 block78279 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014471 ENSRNOG00000010756 Tp53 block78279 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014890 ENSRNOG00000010756 Tp53 block78279 .(((.((((((((((((.((..((((((((((............)).))))))))..))..)))..)))))))........)).))). 0.820 -31.80 # #block78279 chromosome:10:56406179:56406266:1 Same_strand|Intronic_non-coding|ENSRNOT00000014279|ENSRNOG00000010756 ## ENSRNOG00000010756|protein_coding|Tp53|Cellular tumor antigen p53 (Tumor suppressor p53). [Source:UniProtKB/Swiss-Prot;Acc:P10361] ========== block78714 [novel_mirtron_randfoldOK] ========== #randfold block78714: 0.007 randfold mouseZ26p8_block78714: 0.016 #forester mouseZ26p8_block78714: 0.618683 #identity: 83.93 block78714 TCTTACCCTCTCTTTTCCCAG #rat_gr911116_libT1S2 21 1 block78714 TCCCGTTCCCTTTCCCCTTGAGGGAATTGGGCAGTAAGGGGAACTGACCCTCTTACCCTCTCTTTTCCCAGGGTAACTCAGGTCTGGG mouseZ26p8 ----------------TTTGACGGAATTAGGCGGTAAGGGGACCTGACCTTCTTACCCTCTTTTTTTC--------CCCA-------- **** ****** *** ********* ****** *********** **** * * ** block78714 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000025211 ENSRNOG00000018526 Dlgh4 block78714 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000039956 ENSRNOG00000018526 Dlgh4 block78714 .((((..((.....((((...(((((..(((..((((((((.......))))))))...)))..))))))))).......))..)))) 0.890 -32.00 # mouseZ26p8 ......((((..(((.(((((((((.......))))))))).)))....))) )... 1.000 -16.70 # #block78714 chromosome:10:56876615:56876702:1 Same_strand|Intronic_coding|ENSRNOT00000025211|ENSRNOG00000018526 ## ENSRNOG00000018526|protein_coding|Dlgh4|Disks large homolog 4 (Postsynaptic density protein 95) (PSD-95) (Synapse-associated protein 90) (SAP90). [Source:UniProtKB/Swiss-Prot;Acc:P31016] #mouseZ26p8 chromosome:11:69844276:69844403:1 Same_strand|Boundary_coding|ENSMUST00000108589|ENSMUSG00000020886|protein_coding|discs, large homolog 4 (Drosophila) Gene [Source:MGI (curated);Acc:Dlg4-002] ========== block80362 [novel_randfoldOK] ========== #randfold block80362: 0.003 #forester #identity: 0.00 block80362 AGGAAGAAGAAGAAGATGAG #rat_gr169834_libT5S1 20 1 block80362 tccaacttaactcttccctacctatccacccactccaccccgggtcccacctccacacaagaagaatgggggggagagggagggAGGAAGAAGAAGAAGATGAGgaggag ************************************************************************************************************** block80362 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000026351 ENSRNOG00000019458 Carkl block80362 (((..((((.((((((.((.(((.(((.(((.((((.(((((((.....)))...............)))).)))).))).)))))).))..)))).)).))))..))). 0.830 -41.06 # #block80362 chromosome:10:60089097:60089206:1 Same_strand|Intronic_coding|ENSRNOT00000026351|ENSRNOG00000019458 ## ENSRNOG00000019458|protein_coding|Carkl|carbohydrate kinase-like [Source:RefSeq_peptide;Acc:NP_001028854] ## {Repeats: trf 31 51 0 class=trf,trf 60 80 0 class=trf,GA-rich 15 35 1 class=Low_complexity,dust 60089244 60089264 0 class=dust,trf 87 107 0 class=trf,GA-rich 1 46 1 class=Low_complexity} ========== block81687 [novel_cloningOK_mirtron] ========== #randfold block81687: 0.133 randfold human214p8_block81687: 0.069 randfold mouseZ27p8_block81687: 0.024 #forester human214p8_block81687: 0.305666 forester mouseZ27p8_block81687: 0.844357 #identity: 78.08 block81687 TCATGTGCTTCCTCGCCTCCAG #rat_gr824486_libT1S1 22 3 block81687 TCATGTGCTTCCTCGCCTCC #rat_gr824484_libT1S1 20 2 block81687 TCATGTGCTTCCTCGCCTCC #rat_gr824484_libT3S2 20 2 block81687 TTCATGTGCTTCCTCGCC #rat_gr1113691_libT1S1 18 1 block81687 TTCATGTGCTTCCTCGCC #rat_gr1113691_libT5S1 18 1 block81687 TCATGTGCTTCCTCGCCTC #rat_gr824483_libT3S1 19 1 block81687 TCATGTGCTTCCTCGCCTCCA #rat_gr824485_libT3S1 21 1 block81687 TCATGTGCTTCCTCGCCTCCAG #rat_gr824486_libT1S2 22 1 block81687 TCATGTGCTTCCTCGCCTCCAG #rat_gr824486_libT3S1 22 1 block81687 TCATGTGCTTCCTCGCCTCCAG #rat_gr824486_libT5S1 22 1 block81687 GATCCATCTCTGTGAACAAGTCTTCATGTGCTTCCTCGCCTCCAGCATCACGTTTGCAGGGGGTCCAGGCAGG-GATGGCATCATCGACTTCACATCTGGCTC---------- human214p8 ----------------------TTCATGTGCTTCCTCCTCATCAACCTGCTCCATCTAGAAAGT---GGTAGGAGAAGGC-----------CACA---AGCT----------- mouseZ27p8 -------CTCTGTAACCAAGTCTTCATGTGCTTCCTTGCCTCCAGCATAACGTTTGCAGGGGGTCCAGGCAGG-GACGGCATCATTGACTTCACATCGGGCTCAGAGCTTCTC ************** * ** * * * ** ** ** *** ** *** **** *** block81687 ++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000036666 ENSRNOG00000004072 Myo1c block81687 ((.(((....(((((...((((...((((((((((..((((((.(((.......)))...))....))))..) )).)))).))).)))))))))..))).)) 0.450 -30.10 # human214p8 ....(((((((.(((((.((((.....((......))....) )))))))).)))) .))) .... 0.997 -15.90 # mouseZ27p8 (((((...(((((((...((((((((((((((((((.(((.......)))...))....))))))) )).)))).))).)))))......))...)))))...... 0.890 -35.80 # #block81687 chromosome:10:63006072:63006173:1 Same_strand|Intronic_non-coding|ENSRNOT00000036666|ENSRNOG00000004072 ## ENSRNOG00000004072|protein_coding|Myo1c|myosin IC [Source:RefSeq_peptide;Acc:NP_075580] #human214p8 chromosome:9:134678540:134678681:1 Opposite_strand|Intronic_coding|ENST00000298545|ENSG00000165695|protein_coding|Putative adenylate kinase-like protein C9orf98 (EC 2.7.4.3) [Source:UniProtKB/Swiss-Prot;Acc:Q96MA6] #mouseZ27p8 chromosome:11:75485616:75485720:1 Same_strand|Boundary_coding|ENSMUST00000102505|ENSMUSG00000017774|protein_coding|myosin IC Gene [Source:MGI (curated);Acc:Myo1c-002] ## Same_strand|Boundary_non-coding|ENSMUST00000108427|ENSMUSG00000017774|protein_coding|myosin IC Gene [Source:MGI (curated);Acc:Myo1c-002] ========== block82260 [novel_randfoldOK] ========== #randfold block82260: 0.008 #forester #identity: 0.00 block82260 ACCCTCCCACCCCCACTCCCT #rat_gr99146_libT3S1 21 1 block82260 ccgacACCCTCCCACCCCCACTCCCTttccctaacagagcctgctgagattcagctgtggaagagggagaaagcagggaaatggaactgtggagggagga **************************************************************************************************** block82260 -------------------------------------------------------------------------------------------------------------- #ENSRNOT00000012154 ENSRNOG00000008798 Pipox block82260 ((....((((((((...(((.(((((((((((.......((.((((.....))))...))...)))))).....)))))..)))...)).)))))).)). 0.920 -38.00 # #block82260 chromosome:10:63947682:63947781:1 Opposite_strand|Intronic_non-coding|ENSRNOT00000012154|ENSRNOG00000008798 ## ENSRNOG00000008798|protein_coding|Pipox|pipecolic acid oxidase [Source:RefSeq_peptide;Acc:NP_001012009] ========== block84799 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block84799: 0.001 #forester #identity: 0.00 block84799 AAGCCAGGGGTTGAGCCC #rat_gr46054_libT2S1 18 8 block84799 AAGCCAGGGGTTGAGCCC #rat_gr46054_libT5S1 18 3 block84799 AAGCCAGGGGTTGAGCCC #rat_gr46054_libT4S1 18 2 block84799 GAAGCCAGGGGTTGAGCCC #rat_gr486300_libT5S1 19 1 block84799 ggaacaggctgggtctcaacccgctggtctcctcaggctaagggagctcccagccgactgatgatgagtcctgaatggcagtgtaggAAGCCAGGGGTTGAGCCCagctcgtgcc ******************************************************************************************************************* block84799 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000004609 ENSRNOG00000003276 Myo1d block84799 ((.((..((((((.((((((((.((((..((((((.((((.((((.(((.(((....))).....)))))))...))))..)).))))..))))))))))))))))))..)).)) 0.570 -60.60 # #block84799 chromosome:10:68724217:68724331:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000044178|ENSRNOG00000003276 ## Opposite_strand|Intronic_coding|ENSRNOT00000004609|ENSRNOG00000003276 ## ENSRNOG00000003276|protein_coding|Myo1d|Myosin-Id (Myosin heavy chain myr 4). [Source:UniProtKB/Swiss-Prot;Acc:Q63357] ========== block89547 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block89547: 0.003 #forester #identity: 0.00 block89547 TGGTTTACCGTCCCATACC #rat_gr1070654_libT1S1 19 6 block89547 TGGTTTACCGTCCCATACC #rat_gr1070654_libT1S2 19 3 block89547 TGGTTTACCGTCCCATACC #rat_gr1070654_libT2S2 19 2 block89547 TGGTTTACCGTCCCATAC #rat_gr1070653_libT2S1 18 1 block89547 gacgtcagTGGTTTACCGTCCCATACCtcttcccatgtctacaccgacatttgagatgtatggaacaaaggaacggtggaagaaccaccagtca ********************************************************************************************** block89547 (((....(((((((((((((((((((.((((...(((((......)))))..)))).)))))).......)).))))....)))))))..))). 0.890 -30.71 # #block89547 chromosome:10:78133357:78133450:1 intergenic ========== block93130 [novel_randfoldOK] ========== #randfold block93130: 0.005 randfold mouse230p8_block93130: 0.004 #forester mouse230p8_block93130: 0.874676 #identity: 89.47 block93130 AGGCTGTGTCACTGCGGTGT #rat_gr183297_libT1S1 20 1 block93130 -------------TTTGGCGGGCCTACACGGGGCTGTAAACAGGGGCAGGCTGTGTCACTGCGGTGTGGTGGCTCCCACCGCTGAGTGACACGGTGTCCCTGGATGTCACCAGGGCGCACACCGAGA------------------- mouse230p8 GCACGCGAGGCGGGGCTGCGGGCCTGCGCGGGGCTGTAAACAGGGGCGGGCTGTGTCGCTGCGGTGTGGCGGCTCCCACCGCTGCGTGACACGGTGTCCCTGGGTGTCACCAGCGCGCACACCGAGAGGAACCTGCTTCGATGTGC ******** * ******************* ********* *********** ************** ****************** ********* ************* block93130 (((((...((((....(((((......(((((((..(((((((((((((((((.((.....))))))))..))))))))))))))))))...))).))..)).))...))))). 0.470 -54.70 # mouse230p8 ((((((((((((((.((.(((...((((((.((.((((..(((((((..((((((((((.((((((.((.....))))))))...)))))))))))))))))..)).))))..))))))..)))...))..))))))))).))))) 0.979 -85.40 # #block93130 chromosome:10:86083513:86083626:1 intergenic #mouse230p8 chromosome:8:32200082:32200227:1 Same_strand|Boundary_non-coding|ENSMUST00000036631|ENSMUSG00000039661|protein_coding|dual specificity phosphatase 26 (putative) Gene [Source:MGI Symbol;Acc:MGI:1914209] ## {SimpF: oe = 0.78 1 CpG, 1 Eponine} ========== block93282 [novel_randfoldOK] ========== #randfold block93282: 0.006 #forester #identity: 0.00 block93282 GGGAAGTCCTTCCTGAAGTC #rat_gr602562_libT5S2 20 1 block93282 gagctgggctgcagccaggaccacatcccatccagccttcctttgctcaatatttGGGAAGTCCTTCCTGAAGTCtaacctca *********************************************************************************** block93282 --------------------------------------------------------------------------------------------- #ENSRNOT00000015988 ENSRNOG00000011475 Snip block93282 --------------------------------------------------------------------------------------------- #ENSRNOT00000016070 ENSRNOG00000011475 Snip block93282 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000055405 ENSRNOG00000036894 Mel13 block93282 (((.((((((.(((..(((((....(((((...(((........))).......))))).)))))..))).))))))..))). 1.000 -26.20 # #block93282 chromosome:10:86314708:86314790:1 Opposite_strand|Intronic_coding|ENSRNOT00000016070|ENSRNOG00000011475 ## Same_strand|Intronic_coding|ENSRNOT00000055405|ENSRNOG00000036894 ## ENSRNOG00000036894|protein_coding|Mel13|CDGSH iron sulfur domain 3 Gene [Source:MGI (curated);Acc:Mel13-002] ## ENSRNOG00000011475|protein_coding|Snip|p130Cas-associated protein (p140Cap) (SNAP-25-interacting protein) (SNIP). [Source:UniProtKB/Swiss-Prot;Acc:Q9QXY2] ========== block94028 [novel_randfoldOK] ========== #randfold block94028: 0.005 #forester #identity: 0.00 block94028 ATCACAGGTGGTGGGAGGGA #rat_gr214243_libT1S2 20 1 block94028 acctattgcagttcattctacctactgtgggatgggggcagggatgcacagtgggaagggaactcactagagcttacagtgtgctcctgccATCACAGGTGGTGGGAGGGAggaggagga ************************************************************************************************************************ block94028 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047467 ENSRNOG00000031298 RGD1563281_predicted block94028 .(((.......(((.(((((((..((((((......(((((((..(((((.((..(((....(((....)))))).)).)))))))))))).))))))..))))))))))......))). 0.990 -45.82 # #block94028 chromosome:10:87398226:87398345:1 Same_strand|Intronic_coding|ENSRNOT00000047467|ENSRNOG00000031298 ## Same_strand|Boundary_non-coding|ENSRNOT00000039892|ENSRNOG00000031298 ## ENSRNOG00000031298|protein_coding|RGD1563281_predicted| ## {Repeats: GA-rich 1 3 1 class=Low_complexity,dust 87398401 87398407 0 class=dust,GA-rich 1 90 1 class=Low_complexity,trf 33 37 0 class=trf} ========== block95134 [novel_randfoldOK] ========== #randfold block95134: 0.001 randfold mouseZ36p8_block95134: 0.008 #forester mouseZ36p8_block95134: 0.721472 #identity: 94.12 block95134 TAAGGAGCCAGAGACAGCCACA #rat_gr724395_libT5S1 22 1 block95134 CCCCTGAGTCTCCAGAGCTGTGGGCTGGCTCTGGCTCCTCCTCTGTCTCCACCTCCCGCCAAGATAAGGAGCCAGAGACAGCCACACAGTGAAGAGACTGAGAGG mouseZ36p8 ----------------------GGCTGGCTCTCGCTCCT--TCTGTCTCCACCTCCCGCCAAGGAAAGGAGCCAGAGACAGCCACACAGGGA------------- ********** ****** ********************** ************************ ** block95134 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000023447 ENSRNOG00000016924 Acly block95134 ------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000043172 ENSRNOG00000016924 Acly block95134 .((((.((((((....(((((((((((.(((((((((((..(((.................)))..))))))))))).))))).))))))...)))))).)).)) 1.000 -57.63 # mouseZ36p8 (((((.((((.(((((( (.....(((............)))))))))).)))).)))))......... 0.876 -27.40 # #block95134 chromosome:10:89446503:89446607:1 Opposite_strand|Intronic_coding|ENSRNOT00000023447|ENSRNOG00000016924 ## ENSRNOG00000016924|protein_coding|Acly|ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate (pro-S-)-lyase) (Citrate cleavage enzyme). [Source:UniProtKB/Swiss-Prot;Acc:P16638] #mouseZ36p8 chromosome:11:100364190:100364257:1 Opposite_strand|Intronic_coding|ENSMUST00000100457|ENSMUSG00000020917|protein_coding|ATP citrate lyase Gene [Source:MGI (curated);Acc:Acly-005] ========== block95750 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block95750: 0.002 #forester #identity: 0.00 block95750 CCTCTGTCTCCCTTTCCCTGT #rat_gr376782_libT5S2 21 1 block95750 CCTCTGTCTCCCTTTCCCTGTccagctacgcctcagatgcagcctcaggcctcagtgacatgggagaaggggggcaaatgagga ************************************************************************************ block95750 ++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027804 ENSRNOG00000020441 Wnk4 block95750 ++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027770 ENSRNOG00000020441 Wnk4 block95750 ((((((((((((((((((((((..(((..((((.((.......)).))))...))))))).)))))).))))))))...)))). 1.000 -38.80 # #block95750 chromosome:10:90298072:90298155:1 Same_strand|Boundary_non-coding|ENSRNOT00000027728|ENSRNOG00000020441 ## Same_strand|Intronic_coding|ENSRNOT00000027770|ENSRNOG00000020441 ## Same_strand|Intronic_non-coding|ENSRNOT00000027804|ENSRNOG00000020441 ## ENSRNOG00000020441|protein_coding|Wnk4|Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4). [Source:UniProtKB/Swiss-Prot;Acc:Q7TPK6] ========== block98813 [novel_randfoldOK] ========== #randfold block98813: 0.008 #forester #identity: 0.00 block98813 TTTGAAAGGGGCAAGCTATA #rat_gr1167179_libT5S2 20 1 block98813 ctggtttagacaagcagTTTGAAAGGGGCAAGCTATAtccattgtacatgttaacagttgtgcttgttcctttcctaggtccagt ************************************************************************************* block98813 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> #ENSRNOT00000003601 ENSRNOG00000026364 RGD1309285_predicted block98813 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> #ENSRNOT00000055134 ENSRNOG00000026364 RGD1309285_predicted block98813 (((((((((...........((((((..(((((.(((...(((((........)))))))))))))..))))))))))).)))). 0.780 -26.60 # #block98813 chromosome:10:95308742:95308826:1 Same_strand|Intronic_coding|ENSRNOT00000003601|ENSRNOG00000026364 ## ENSRNOG00000026364|protein_coding|RGD1309285_predicted| ========== block99018 [novel_randfoldOK] ========== #randfold block99018: 0.002 #forester #identity: 0.00 block99018 GCCTCAGGTGGCCGAAGCTCT #rat_gr556371_libT3S2 21 1 block99018 ggggacaaaagaaaaGCCTCAGGTGGCCGAAGCTCTaagaccccatcatcacccagacttgagggttccctagagttactgcagatatatctgaggcgctctggtccccc ************************************************************************************************************** block99018 ------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000014508 ENSRNOG00000010557 Smarcd2 block99018 ((((((...(((...((((((((((((...(((((((.(((((((...((.....))..)).)))))...)))))))...)).....))))))))))..))).)))))). 1.000 -46.10 # #block99018 chromosome:10:95662664:95662773:1 Opposite_strand|Intronic_coding|ENSRNOT00000014508|ENSRNOG00000010557 ## ENSRNOG00000010557|protein_coding|Smarcd2|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 (60 kDa BRG-1/Brm-associated factor subunit B) (BRG1-associated factor 60B). [Source:UniProtKB/Swiss-Prot;Acc:O54772] ========== block102697 [novel_randfoldOK] ========== #randfold block102697: 0.001 randfold mouseZ8p9_block102697: 0.007 #forester mouseZ8p9_block102697: 0.329947 #identity: 84.29 block102697 GCTGCCTCAATCCCTCCTCCTCCC #rat_gr572684_libT3S2 24 1 block102697 CCAGGGGTTGGAGGGAGCTGGGAGGAAGTGGAGGGGAAGCAGAGGTTCATGGGAATTGAGCTGCCTCAATCCCTCCTCCTCCCGCCCTTGAATCAATGAACTCTGG- mouseZ8p9 ----------------GCTGGGAGGAAGTGGAGGGGAAGCAGAGGTTCATGGGAACTGAGCTGCCTCAATTC--------------------TGGAAAAGCCACAGC *************************************** ************** * * * * * * block102697 --------------------------------------------------------------------------------------------------------------- ----- #ENSRNOT00000035607 ENSRNOG00000024711 NP_001101773.1 block102697 (((((((((((((((.((.(((((((...((((((((.((((.(((((....)))))...)))).))...)))))))))))))))))))...)))))...)))))) 1.000 -49.60 # mouseZ8p9 ((((((.......((((..((.((((.(((((....)))))...)))).))..))) ).......)).)))) 0.992 -24.34 # #block102697 chromosome:10:103498189:103498294:1 Opposite_strand|Intronic_coding|ENSRNOT00000035607|ENSRNOG00000024711 ## ENSRNOG00000024711|protein_coding|NP_001101773.1|sidekick homolog 2 [Source:RefSeq_peptide;Acc:NP_001101773] #mouseZ8p9 chromosome:11:113718491:113718561:1 Opposite_strand|Intronic_coding|ENSMUST00000041627|ENSMUSG00000041592|protein_coding|sidekick homolog 2 (chicken) Gene [Source:MGI (curated);Acc:Sdk2-001] ========== block103125 [novel_randfoldOK] ========== #randfold block103125: 0.009 #forester #identity: 0.00 block103125 TGGGTACAGGGGGACCAGCCT #rat_gr1057596_libT2S2 21 1 block103125 gcctggtggtaatcTGGGTACAGGGGGACCAGCCTcctggtaattataggactcctgggaaatggattgtcatggaaggctgtgttctctccacccagtcactgaccatcttccagcg ********************************************************************************************************************** block103125 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000004081 ENSRNOG00000024578 Ttyh2 block103125 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000055042 ENSRNOG00000024578 Ttyh2 block103125 ((..((((((...((((((...(((((((((((((((((..((((.((((...)))).......))))..)).))).))))).)))))))..))))))......)))))).....)). 0.990 -46.30 # #block103125 chromosome:10:104584893:104585010:1 Same_strand|Intronic_coding|ENSRNOT00000055042|ENSRNOG00000024578 ## ENSRNOG00000024578|protein_coding|Ttyh2|tweety homolog 2 (Drosophila) Gene [Source:MGI (curated);Acc:Ttyh2-001] ========== block103134 [novel_randfoldOK] ========== #randfold block103134: 0.001 randfold mouseZ11p9_block103134: 0.001 #forester mouseZ11p9_block103134: 0.814588 #identity: 92.68 block103134 TGCAGAGACACAGCTGGGAT #rat_gr961300_libT2S1 20 1 block103134 TGGTTTTCAGCGGATGCAGAAACCCAGCTGTGTTTCTGGAATAGAAACTGAAGGTCCCTGGACAGGAACAGGCTCCCGTGTCTGCAGAGACACAGCTGGGATTCCTGACCAAAGCC mouseZ11p9 --------------------AACCCAGCTGTGTTTCTGGAATAGAAACCGAAGGTTCCTGGACACGAACAGGCTCCTGTGGCTGCAGAGACACAGCTGGGAC-------------- **************************** ****** ******** *********** *** ******************** block103134 .((((((....((...(((((.((((((((((((((((...((((.((....((..((((........))))..)).)).)))))))))))))))))))).))).)).)))))))) 0.480 -48.20 # mouseZ11p9 ..((((((((((((((((...(((...(((.(((..((((........))))..))).)))))))))))))))))))))).. 0.997 -43.60 # #block103134 chromosome:10:104596078:104596193:1 intergenic #mouseZ11p9 chromosome:11:114580530:114580685:1 Same_strand|Exonic_non-coding|ENSMUST00000045779|ENSMUSG00000034714|protein_coding|tweety homolog 2 (Drosophila) Gene [Source:MGI (curated);Acc:Ttyh2-001] ========== block103914 [novel_randfoldOK] ========== #randfold block103914: 0.007 #forester #identity: 0.00 block103914 TGGCTCTGAGGGCTTGGTAG #rat_gr1017351_libT2S2 20 1 block103914 ttccatcgtgTGGCTCTGAGGGCTTGGTAGcaagtaccttcacctgcccagccaactcagctgggtttgactaagtgggctagccaacaccagtattcagagccattggcacacgggaat ************************************************************************************************************************ block103914 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000005035 ENSRNOG00000003673 Pcnt1 block103914 ((((...((((((((((((((..((((((((........(((...(((((((.......))))))).)))........)))).))))..)).....))))))))....))))...)))). 0.870 -46.09 # #block103914 chromosome:10:105719981:105720100:1 Same_strand|Intronic_non-coding|ENSRNOT00000005035|ENSRNOG00000003673 ## ENSRNOG00000003673|protein_coding|Pcnt1|pericentrin 1 [Source:RefSeq_peptide;Acc:NP_001020572] ========== block104015 [novel_randfoldOK] ========== #randfold block104015: 0.001 randfold mouse104p9_block104015: 0.059 #forester mouse104p9_block104015: 0.364824 #identity: 82.22 block104015 TCCTCAGGCTCTGCCCCATG #rat_gr872627_libT1S1 20 1 block104015 GTCACTACCCCTGGCTGCTTATTCCTCAGGCTCTGCCCCATGCTCTTCAAGCAGGCAGAGCT---ATGG---ATACCACACCAGGGCAAGCACGGC mouse104p9 ----------------------TCCTCAGGCTCTGCCT---------------GGAATAGCTCACATGGGGCATAGCTCACATGGGGA-------- *************** ** * **** **** *** * *** *** * block104015 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++++++++++++ #ENSRNOT00000005684 ENSRNOG00000004032 2310067B10Rik block104015 (((.((..((((((.((.....(((...(((((((((...((((.....))))))))))))) ..)) ).....))))))))..))...))) 0.990 -35.80 # mouse104p9 ((((((((((.((((( .((.....)).....))))).))))....)))))) 0.294 -16.80 # #block104015 chromosome:10:105880318:105880407:1 Same_strand|Intronic_coding|ENSRNOT00000005684|ENSRNOG00000004032 ## ENSRNOG00000004032|protein_coding|2310067B10Rik|RIKEN cDNA 2310067B10 gene Gene [Source:MGI Symbol;Acc:MGI:1919197] #mouse104p9 chromosome:2:131368467:131368596:-1 intergenic ========== block104027 [MANUAL_level2] ========== #randfold block104027: 0.001 #forester #identity: 0.00 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT1S1 21 69 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT1S2 21 56 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT3S1 21 21 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT4S1 21 19 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT2S1 21 17 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT1S1 18 15 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT4S2 21 15 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT1S1 20 12 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT1S1 19 10 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT1S2 18 9 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT1S2 19 9 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT3S2 21 9 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT1S2 20 8 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT5S2 21 8 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT2S2 21 7 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT2S2 18 5 block104027 TCTGTCCCTCTTGGCCCTTAG #rat_gr909429_libT5S1 21 5 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT4S1 18 4 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT3S1 19 4 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT4S1 19 4 block104027 ATCTGTCCCTCTTGGCCCTTA #rat_gr225181_libT1S1 21 3 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT5S2 18 3 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT2S2 19 3 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT4S2 19 3 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT3S1 18 2 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT5S1 18 2 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT2S1 19 2 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT2S2 20 2 block104027 TCTGTCCCTCTTGGCCCTTAGG #rat_gr909430_libT1S2 22 2 block104027 CTGTCCCTCTTGGCCCTTAG #rat_gr454468_libT3S1 20 2 block104027 ATCTGTCCCTCTTGGCCCTTA #rat_gr225181_libT1S2 21 1 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT3S2 18 1 block104027 TCTGTCCCTCTTGGCCCT #rat_gr909424_libT4S2 18 1 block104027 TCTGTCCCTCTTGGCCCTT #rat_gr909427_libT5S1 19 1 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT3S2 20 1 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT4S2 20 1 block104027 TCTGTCCCTCTTGGCCCTTA #rat_gr909428_libT5S2 20 1 block104027 TCTGTCCCTCTTGGCCCTTAGG #rat_gr909430_libT4S2 22 1 block104027 CTGTCCCTCTTGGCCCTT #rat_gr454467_libT1S1 18 1 block104027 TGTCCCTCTTGGCCCTTAG #rat_gr1079750_libT2S2 19 1 block104027 acgtggtccttagtggaggtttgcttgttataggggctaagaggggccaggcgtgcctgtcatcaTCTGTCCCTCTTGGCCCTTAGgctcggcatgctacctatggcatccgta ****************************************************************************************************************** block104027 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000005684 ENSRNOG00000004032 2310067B10Rik block104027 (((.(((((.....((.(((.((((.(((.(((((((((((((((((((((....)))).........))))))))))))))))))))..)))).))).))...)).)))))). 0.970 -51.90 # #block104027 chromosome:10:105897773:105897886:1 Same_strand|Boundary_coding|ENSRNOT00000005684|ENSRNOG00000004032 ## ENSRNOG00000004032|protein_coding|2310067B10Rik|RIKEN cDNA 2310067B10 gene Gene [Source:MGI Symbol;Acc:MGI:1919197] ========== block104393 [novel_randfoldOK] ========== #randfold block104393: 0.008 randfold mouse141p9_block104393: 0.013 #forester mouse141p9_block104393: 0.366838 #identity: 74.47 block104393 GAGGACAGCTGAGTAGGGAG #rat_gr511902_libT4S1 20 1 block104393 CACCGGTGGATCTAAACCCTGCCAGCCCCTCAAC----TCTGAGGACAGCTGAGTAGGGAGGGTCGGAGCCAAAGTGA mouse141p9 AATCTGT------------TAGCAGGTTCTCAACATATTCTGAGGACAGCTGAGTA-------CCAGGAC-------- * * ** * *** ****** ****************** * * * block104393 (((.(((.(((((...((((((((((.(((((.. ..)))))...)))).)))))).)))))...)))...))). 1.000 -31.60 # mouse141p9 ..((((( ((((..(((((((........))))))).)))))... .)))).. 0.999 -14.90 # #block104393 chromosome:10:106548057:106548130:1 intergenic #mouse141p9 chromosome:15:99456010:99456123:1 Opposite_strand|Intronic_coding|ENSMUST00000023756|ENSMUSG00000023015|protein_coding|Rac GTPase-activating protein 1 Gene [Source:MGI Symbol;Acc:MGI:1349423] ========== block104939 [novel_randfoldOK] ========== #randfold block104939: 0.004 #forester #identity: 0.00 block104939 GGTCCTACTGGTGGGTGACTG #rat_gr619780_libT2S2 21 1 block104939 tgctccgccggccttggtactcacattctcagtggagacctcggggcagctcctttgagccttgggcaccctgGGTCCTACTGGTGGGTGACTGcctgcactggagt *********************************************************************************************************** block104939 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003891 ENSRNOG00000002807 Sept9 block104939 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000010365 ENSRNOG00000002807 Sept9 block104939 .((((((...((...((((.((((....(((((((.(((((.(((((.((((....)))).....)).))).))))))))))))...)))).)))).))..)))))) 1.000 -49.50 # #block104939 chromosome:10:107422474:107422580:1 Same_strand|Boundary_non-coding|ENSRNOT00000055000|ENSRNOG00000002807 ## Same_strand|Intronic_coding|ENSRNOT00000003891|ENSRNOG00000002807 ## ENSRNOG00000002807|protein_coding|Sept9|Septin-9 (Eseptin) (Eighth septin) (Septin-like protein) (SLP). [Source:UniProtKB/Swiss-Prot;Acc:Q9QZR6] ========== block105799 [novel_randfoldOK] ========== #randfold block105799: 0.006 #forester #identity: 0.00 block105799 TGCCACCCTGCTTCACTCTT #rat_gr964277_libT1S1 20 1 block105799 CCCTGCTTCACTCTTGACTCCAG #rat_gr362286_libT4S2 23 1 block105799 cgtagtcttcatttgtgctttgccccctggggtgtaggcagtggagtgatggtgggcagtgtgggaagatggcTGCCACCCTGCTTCACTCTTGACTCCAGgcgtggttgaggagctgct ************************************************************************************************************************ block105799 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000005337 ENSRNOG00000003821 RGD1311784_predicted block105799 .((((((((((..........(((.((((((((.((((.((((((((...(((.((((((...........)))))))))..))))))))))))))))))))...))))))))).)))). 0.840 -50.40 # #block105799 chromosome:10:109085247:109085366:1 Same_strand|Intronic_coding|ENSRNOT00000005337|ENSRNOG00000003821 ## ENSRNOG00000003821|protein_coding|RGD1311784_predicted| ========== block106348 [novel_mirtron_randfoldOK] ========== #randfold block106348: 0.006 #forester #identity: 0.00 block106348 TCAGCCTCCACCGCCTACCCA #rat_gr818173_libT3S2 21 1 block106348 tgagtgcaagagggcggtgggtggcgggagctggtgggacagggacgggcccTCAGCCTCCACCGCCTACCCAggccctgtgtgtcaa **************************************************************************************** block106348 -------------------------------------------------------------------------------------------------- #ENSRNOT00000054970 ENSRNOG00000036697 Mafg block106348 >>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> #ENSRNOT00000054953 ENSRNOG00000036685 Npb block106348 (((.((((..((((((((((((((.((..(((((.(((...........))))))))..)).)))))))))...))))).))))))). 1.000 -46.30 # #block106348 chromosome:10:110000077:110000164:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000051462|ENSRNOG00000036697 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000054970|ENSRNOG00000036697 ## Same_strand|Intronic_coding|ENSRNOT00000054953|ENSRNOG00000036685 ## ENSRNOG00000036685|protein_coding|Npb|Neuropeptide B precursor (Preproprotein L7) (rPPL7) [Contains: Neuropeptide B-29 (NPB29) (L7C)]. [Source:UniProtKB/Swiss-Prot;Acc:Q8K4P2] ## ENSRNOG00000036697|protein_coding|Mafg|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Source:RefSeq_peptide;Acc:NP_071781] ========== block108415 [novel_randfoldOK] ========== #randfold block108415: 0.001 #forester #identity: 0.00 block108415 AACACTTTTTTTCAGTTGCCC #rat_gr26728_libT1S2 21 1 block108415 gttgaagggcattaaaagggcaactaaaaaaagtgggtttttttttttttgtaaAACACTTTTTTTCAGTTGCCCttttaatttacttttatact *********************************************************************************************** block108415 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046370 ENSRNOG00000030840 Igsf4d_predicted block108415 ((((((((..(((((((((((((((((((((((((..((.............))..)))))))))).)))))))))))))))...)))))).)). 1.000 -35.22 # #block108415 chromosome:11:4721413:4721507:-1 Same_strand|Intronic_coding|ENSRNOT00000046370|ENSRNOG00000030840 ## ENSRNOG00000030840|protein_coding|Igsf4d_predicted|immunoglobulin superfamily, member 4D [Source:RefSeq_peptide;Acc:NP_001040567] ========== block108627 [novel_randfoldOK] ========== #randfold block108627: 0.005 #forester #identity: 0.00 block108627 TTGTGTTTACAGATGTCACAG #rat_gr1150947_libT1S2 21 1 block108627 aatcacagTTGTGTTTACAGATGTCACAGggctgactttggcaagttaatctaaacttaagaactgaagtgtttgagttagttctatgaatttgtggaaagcttagtaggtt **************************************************************************************************************** block108627 ((((((((((...(((((((((.(((.((..(((((((..(((..(((.(((.......)))..)))..)))..)))))))..)).)))))))))))).))))..)).)))) 0.970 -31.50 # #block108627 chromosome:11:5425378:5425489:-1 intergenic ========== block113823 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block113823: 0.007 #forester #identity: 0.00 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT4S2 18 9 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT1S1 18 7 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT5S1 18 6 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT3S1 18 5 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT3S2 18 5 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT1S2 18 4 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT3S1 19 3 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT2S2 18 3 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT5S2 18 3 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT1S1 19 2 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT4S2 19 2 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT5S2 19 2 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT2S1 18 2 block113823 TGAGGTAGTAGGTTTATT #rat_gr949718_libT4S1 18 2 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT2S2 19 1 block113823 TGAGGTAGTAGGTTTATTT #rat_gr949719_libT5S1 19 1 block113823 agttcctttgtcatagctaaagttcatctactaatcattctaagcctattaaggcaaagaTGAGGTAGTAGGTTTATTTataaaatgtaaatgagc ************************************************************************************************ block113823 .((((.((((.(((.....((((..((((((((.(((.(((..((((....))))..))))))..))))))))..)))).....))))))).)))) 0.930 -24.40 # #block113823 chromosome:11:21279062:21279157:-1 intergenic ========== block114993 [novel_randfoldOK] ========== #randfold block114993: 0.010 #forester #identity: 0.00 block114993 TGATGTCCTCCAACAAATAT #rat_gr956110_libT2S1 20 1 block114993 agttaattaaTGATGTCCTCCAACAAATATgtcgagctagcatatttggttggcggggggattaattatgagc ************************************************************************* block114993 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000049121 ENSRNOG00000006997 App block114993 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042130 ENSRNOG00000006997 App block114993 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048854 ENSRNOG00000006997 App block114993 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000044081 ENSRNOG00000006997 App block114993 .(((...((((...(((((((..(((((((((.......))))))))).......)))))))..))))..))) 0.900 -20.40 # #block114993 chromosome:11:24464705:24464777:-1 Same_strand|Intronic_coding|ENSRNOT00000049121|ENSRNOG00000006997 ## ENSRNOG00000006997|protein_coding|App|Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid [Source:UniProtKB/Swiss-Prot;Acc:P08592] ========== block115001 [novel_cloningOK] ========== #randfold block115001: 0.017 #forester #identity: 0.00 block115001 TTTTTTGGGGGGTGGGGTTTT #rat_gr1199385_libT1S1 21 6 block115001 TTTTTTGGGGGGTGGGGTTTT #rat_gr1199385_libT3S1 21 2 block115001 GGGGGTGGGGTTTTGGTG #rat_gr613228_libT4S2 18 1 block115001 TTTTTTGGGGGGTGGGGTTTTGGT #rat_gr1199386_libT1S1 24 1 block115001 TTTTTTGGGGGGTGGGGTTTT #rat_gr1199385_libT2S1 21 1 block115001 TTTTTTGGGGGGTGGGGTTTT #rat_gr1199385_libT5S1 21 1 block115001 TTTTTTGGGGGGTGGGGTTT #rat_gr1199384_libT1S1 20 1 block115001 gatcaatgggcctctgatttttaagaagctataactaaactctcaggtgagttttttgtaagattaataggagagttgcaaatcatctgggTTTTTTGGGGGGTGGGGTTTTggtgat ********************************************************************************************************************** block115001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000049121 ENSRNOG00000006997 App block115001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042130 ENSRNOG00000006997 App block115001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048854 ENSRNOG00000006997 App block115001 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000044081 ENSRNOG00000006997 App block115001 .((((..(((((((...((..(((((((((.......(((((((..((.((((((....)))))).))..)))))))............)))))))))..))..)))))))...)))) 0.910 -31.61 # #block115001 chromosome:11:24480138:24480255:-1 Same_strand|Intronic_coding|ENSRNOT00000049121|ENSRNOG00000006997 ## ENSRNOG00000006997|protein_coding|App|Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid [Source:UniProtKB/Swiss-Prot;Acc:P08592] ========== block117976 [novel_randfoldOK] ========== #randfold block117976: 0.001 #forester #identity: 0.00 block117976 GTAGCAGCTTCCTGCCTCTGA #rat_gr629852_libT3S1 21 1 block117976 cagtgttccaaggccagagagcagtgaactgcttctgacaaaatgatctgcaGTAGCAGCTTCCTGCCTCTGAatttaacact *********************************************************************************** block117976 --------------------------------------------------------------------------------------------- #ENSRNOT00000002752 ENSRNOG00000002010 Mrps6 block117976 .((((((..(((..(((((.((((.((((((((.(((.((........))))).))))).))))))))))))..))))))))) 1.000 -32.80 # #block117976 chromosome:11:32090450:32090532:-1 Opposite_strand|Intronic_coding|ENSRNOT00000002752|ENSRNOG00000002010 ## ENSRNOG00000002010|protein_coding|Mrps6|mitochondrial ribosomal protein S6 Gene [Source:MGI (curated);Acc:Mrps6-001] ========== block118139 [novel_randfoldOK] ========== #randfold block118139: 0.001 #forester #identity: 0.00 block118139 TGGGCTCTCTAGGGGCACCC #rat_gr1035773_libT3S2 20 1 block118139 gcagtcatctctgaagtgcccctagtcagcccacctgatagtggttgcattctgacagctactgccttgggTGGGCTCTCTAGGGGCACCCtgtgtggacatgaggc *********************************************************************************************************** block118139 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002714 ENSRNOG00000001979 Dscr1 block118139 ((..((((.((((..((((((((((..((((((((((((((((((((((...)).)))))))))..)))))))))))..))))))))))......)))).)))).)) 0.790 -56.10 # #block118139 chromosome:11:32421306:32421412:-1 Same_strand|Intronic_coding|ENSRNOT00000002714|ENSRNOG00000001979 ## Same_strand|Boundary_non-coding|ENSRNOT00000002715|ENSRNOG00000001979 ## ENSRNOG00000001979|protein_coding|Dscr1|Calcipressin-1 (Regulator of calcineurin 1) (Down syndrome critical region protein 1 homolog) (Myocyte-enriched calcineurin-interacting protein 1) (MCIP1). [Source:UniProtKB/Swiss-Prot;Acc:Q6IN33] ========== block118282 [novel_randfoldOK] ========== #randfold block118282: 0.001 #forester #identity: 0.00 block118282 AGCATTCATGAACACACATGTGC #rat_gr156402_libT3S2 23 1 block118282 gtctctgtgtgcgcatgAGCATTCATGAACACACATGTGCattggtgaacacacatgcacatgtgctcatgtgggcacatgcacacacacaagtaca ************************************************************************************************* block118282 ((((.((((((.(((((.((...(((((...(((((((((((..(((....)))))))))))))).)))))...)).))))).))))))..)).)). 1.000 -44.80 # #block118282 chromosome:11:32745306:32745402:-1 intergenic ## {Repeats: trf 18 41 0 class=trf} ========== block119657 [novel_randfoldOK] ========== #randfold block119657: 0.001 #forester #identity: 0.00 block119657 CCATTTTCTCACCCTACCTCCCC #rat_gr338968_libT3S1 23 1 block119657 gtggtgcacaggaagcagaggaagaggaagggcctggggaccaggtgtaactttcagagacctcagatttgcaCCATTTTCTCACCCTACCTCCCCgcctgtctggcacca *************************************************************************************************************** block119657 .((((((.(((...((((.((..((((.((((..((((((...(((((((.(((.((....)).))).)))))))...)))))))))).)))).))..))))))))))))) 1.000 -46.30 # #block119657 chromosome:11:36235744:36235854:-1 intergenic ========== block123066 [novel_randfoldOK] ========== #randfold block123066: 0.003 #forester #identity: 0.00 block123066 AATATTAGGAAGTAAGATTG #rat_gr59345_libT2S1 20 1 block123066 cgtgtgatgtgttgtatgaaaataattaagtggcagtcactaacattaattactaattagtgctaattaattagtagttAATATTAGGAAGTAAGATTGtattcacctcagccagactac ************************************************************************************************************************ block123066 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000044177 ENSRNOG00000001616 NP_001099358.1 block123066 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000043270 ENSRNOG00000001616 NP_001099358.1 block123066 .(((...((.((((..((((.((((((.....((..((.((((.(((((((((((((((((....))))))))))))))))).)))))).))..)))))).))))...))))))...))) 0.930 -30.80 # #block123066 chromosome:11:45495944:45496063:-1 Same_strand|Boundary_non-coding|ENSRNOT00000047213|ENSRNOG00000001616 ## Same_strand|Intronic_coding|ENSRNOT00000043270|ENSRNOG00000001616 ## ENSRNOG00000001616|protein_coding|NP_001099358.1|SUMO1/sentrin specific protease 7 [Source:RefSeq_peptide;Acc:NP_001099358] ========== block130063 [novel_randfoldOK] ========== #randfold block130063: 0.001 #forester #identity: 0.00 block130063 CGAACTTGCTCTCTAATCAG #rat_gr387978_libT5S2 20 1 block130063 GCCTCAGCGAACTTGCTCTCT #rat_gr556313_libT4S2 21 1 block130063 gtcctgtgcttgctctaatcctgcaaaccGCCTCAGCGAACTTGCTCTCTAATCAGcttctatggagctggttggaggcagacgctgaagagccaggaggtagttcagggtcgggatt ********************************************************************************************************************** block130063 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003645 ENSRNOG00000002701 Hgd block130063 ((((((..((((..(((.(((((......(((((((((...((((.(((((((((((((.....))))))))))))))))).))))).)).)))))))..)))..))))..)))))). 0.990 -54.90 # #block130063 chromosome:11:64919173:64919290:-1 Same_strand|Intronic_coding|ENSRNOT00000003645|ENSRNOG00000002701 ## ENSRNOG00000002701|protein_coding|Hgd|homogentisate 1, 2-dioxygenase [Source:RefSeq_peptide;Acc:NP_001012145] ========== block130621 [novel_randfoldOK] ========== #randfold block130621: 0.001 #forester #identity: 0.00 block130621 ACCATATCAATGCAGCCATTT #rat_gr92473_libT5S2 21 1 block130621 ggggacagagttcccaggacaaggctgcaACCATATCAATGCAGCCATTTcagtaccaaggatgtctgaattgatatatgttttcctgtcctggggttccc ***************************************************************************************************** block130621 ((((((......((((((((.(((..(((...((((((((.(((.(((((.........))))).))).)))))))).)))...))))))))))))))))) 0.610 -39.30 # #block130621 chromosome:11:66486025:66486125:-1 intergenic ========== block131510 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block131510: 0.010 #forester #identity: 0.00 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT2S1 19 326 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT2S2 19 186 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT1S1 19 91 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT5S1 19 63 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT4S2 19 42 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT1S2 19 33 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT5S2 19 29 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT2S1 18 23 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT2S2 18 19 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT4S1 19 13 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT3S2 19 10 block131510 AGGCAAGATGCTGGCAGAG #rat_gr176238_libT3S1 19 8 block131510 AGGCAAGATGCTGGCAGAGG #rat_gr176239_libT2S1 20 5 block131510 AGGCAAGATGCTGGCAGAGGAG #rat_gr176241_libT2S1 22 3 block131510 AGGCAAGATGCTGGCAGAGGAG #rat_gr176241_libT2S2 22 3 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT5S2 18 3 block131510 AGGCAAGATGCTGGCAGAGGA #rat_gr176240_libT2S1 21 2 block131510 AGGCAAGATGCTGGCAGAGGA #rat_gr176240_libT2S2 21 2 block131510 AGGCAAGATGCTGGCAGAGG #rat_gr176239_libT2S2 20 2 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT1S1 18 2 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT1S2 18 2 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT4S1 18 2 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT5S1 18 2 block131510 GAGGCAAGATGCTGGCAG #rat_gr512619_libT2S1 18 2 block131510 AGGCAAGATGCTGGCAGAGGAG #rat_gr176241_libT4S1 22 1 block131510 AGGCAAGATGCTGGCAGAGGA #rat_gr176240_libT5S1 21 1 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT3S1 18 1 block131510 AGGCAAGATGCTGGCAGA #rat_gr176234_libT4S2 18 1 block131510 acatgctttattttacctgggcagAGGCAAGATGCTGGCAGAGgagggcgggtgcagcaaatggtccgtttctctgcctaccatgctcctggctttgctctcagaatgaaatgtgt ******************************************************************************************************************** block131510 ------------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000016438 ENSRNOG00000001706 Kalrn block131510 ((((..((((((((....((((((((.((.((.((.(((((((((..((((((.((.....)))))))))))))))))......)))).)).))))))))..))))))))..)))) 1.000 -43.30 # #block131510 chromosome:11:68191464:68191579:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000016340|ENSRNOG00000001706 ## Opposite_strand|Intronic_coding|ENSRNOT00000016438|ENSRNOG00000001706 ## ENSRNOG00000001706|protein_coding|Kalrn|Kalirin (EC 2.7.11.1) (Huntingtin-associated protein-interacting protein) (Protein Duo) (Serine/threonine kinase with Dbl- and pleckstrin homology domain) (PAM COOH-terminal interactor protein 10) (P-CIP10). [Source:UniProtKB/Swiss-Prot;Acc:P97924] ========== block131830 [novel_randfoldOK] ========== #randfold block131830: 0.002 randfold mouse79p10_block131830: 0.010 #forester mouse79p10_block131830: 0.339852 #identity: 70.21 block131830 TTTTGTGGGGGTGGGGG----------------TTT #rat_gr1187690_libT1S2 20 1 block131830 ---GCTCT---AGTCAATTGGCA-------CTGC--CCCTCCTCCCCTCAA----AACAAAGCTATTGCCTGACAAAGCAAAGCTGTTTTTGTGGGGGTGGGGG----------------TTTTGCTCAGTGTGGTGT mouse79p10 GCGACTCTCCAACCCAAAGGGCAGCTCTTCCTGCTTCCTGCTTCCTCTCAAGTGCACCGTCTTTATTGC-------AGATGGGCTTCTTTTGTGGGGGTGGGGGGAGAGGGGGAAGTTGTCTCTAGGCAAAGT--TGT **** * *** **** **** ** * *** ***** * * ****** ** *** ***************** * * ** ** *** block131830 ((.(( (....((((((( ..(( (((..(((((..((( ((...((((.((((........))))))))..))))).)))))..)))) )..))).)))).))).)) 0.990 -41.00 # mouse79p10 ((((((.......((...(((((((((..(((.(((((..(((((...((((.((.((((((....... ))))))))....)))).)))))..)))))..)))..)).)))))))...))...))) ))) 0.968 -50.90 # #block131830 chromosome:11:68807866:68807968:-1 intergenic #mouse79p10 chromosome:2:157550502:157550630:1 intergenic ## {Repeats: trf 0 class=trf,dust 0 class=dust} ========== block132700 [novel_randfoldOK] ========== #randfold block132700: 0.001 #forester #identity: 0.00 block132700 TCATTGCAGCCCTCTGCACA #rat_gr825229_libT2S2 20 2 block132700 TCATTGCAGCCCTCTGCACACAG #rat_gr825230_libT1S2 23 1 block132700 TCATTGCAGCCCTCTGCACACAG #rat_gr825230_libT3S2 23 1 block132700 TCATTGCAGCCCTCTGCACACAG #rat_gr825230_libT4S1 23 1 block132700 TCATTGCAGCCCTCTGCAC #rat_gr825228_libT3S2 19 1 block132700 tggtatctctctctcagcccagTCATTGCAGCCCTCTGCACACAGccaagatatgaaacaggccgtgtgcaggctgcagtgttgggaggagtttcaaggtaaggagattaactgcggcca ************************************************************************************************************************ block132700 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002403 ENSRNOG00000001762 Pcyt1a block132700 .(((((((((..(((..(((((.((((((((((...(((((((.(((.............))).))))))))))))))))))))))..)))...........))))))........))). 0.850 -51.24 # #block132700 chromosome:11:70155093:70155212:-1 Same_strand|Intronic_non-coding|ENSRNOT00000002403|ENSRNOG00000001762 ## ENSRNOG00000001762|protein_coding|Pcyt1a|Choline-phosphate cytidylyltransferase A (EC 2.7.7.15) (Phosphorylcholine transferase A) (CTP:phosphocholine cytidylyltransferase A) (CT A) (CCT A) (CCT-alpha). [Source:UniProtKB/Swiss-Prot;Acc:P19836] ========== block133732 [novel_randfoldOK] ========== #randfold block133732: 0.005 #forester #identity: 0.00 block133732 AGAGCTATTCTCTCTCCAGT #rat_gr143566_libT5S2 20 1 block133732 tttcctggAGAGCTATTCTCTCTCCAGTtaccccagcgcttttggctctgaggtggctcaggttgtgagccgggagatggggggcggggaagaagcactacaaaggaaa ************************************************************************************************************* block133732 .(((((..((.(((..(((.(((((.(((.(((((...((((((((((((((....))))......)))))))))).))))))))))))))))))).))....))))). 1.000 -45.90 # #block133732 chromosome:11:72011129:72011237:-1 intergenic ========== block135044 [novel_randfoldOK] ========== #randfold block135044: 0.008 #forester #identity: 0.00 block135044 GTGAATGGATGACCAACTGG #rat_gr643602_libT3S1 20 1 block135044 tgctcctcagctggatccatgccttttatggggccagcagttactcatgaaatatttaaatagGTGAATGGATGACCAACTGGgcgagtac ******************************************************************************************* block135044 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002649 ENSRNOG00000001930 C3orf6h block135044 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002647 ENSRNOG00000001930 C3orf6h block135044 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000045811 ENSRNOG00000001930 C3orf6h block135044 ((((((((((.(((((((((((((((((((((...........))))))))..........))))..))))))..))).))))).))))). 0.770 -30.30 # #block135044 chromosome:11:75357307:75357397:-1 Same_strand|Intronic_coding|ENSRNOT00000045811|ENSRNOG00000001930 ## ENSRNOG00000001930|protein_coding|C3orf6h|Coiled-coil domain-containing protein 50 (Protein Ymer). [Source:UniProtKB/Swiss-Prot;Acc:Q810U0] ========== block136493 [novel_randfoldOK] ========== #randfold block136493: 0.007 randfold mouseZ9p10_block136493: 0.014 #forester mouseZ9p10_block136493: 0.516526 #identity: 85.71 block136493 CTGAAAGAACTGGGAAACTG #rat_gr433927_libT5S2 20 1 block136493 AGGAAACTGAAAGAACTGGGAAACTGAAACTGTTCTTTGTTCTCTCTCTCTCCCAGAATTGAGGAAGAAGACAGAGAGCTGCCTACTAA-CCAGGGTCTTAGCTTTCACCT------- mouseZ9p10 TGGAAACTGAAAGAACCGGGAAACTGAAACTGTTCTTTGT--TTCCTCTCTCCCAGATTTGAG---GAAGACAGTGAGCTGCTGAGTAACCCGGGGCCTCAGCTTCCACACCTCTGAG *************** *********************** * ************ ***** ******** ******* * *** ** *** ** ***** *** block136493 .................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000043660 ENSRNOG00000028895 NP_001101791.1 block136493 (((....((((((..((((((..(((.....(((((((((..(((..(((..........)))..)))..))))))))).......... .)))..))))))))))))))) 0.530 -34.09 # mouseZ9p10 (((((.((((.....(((((..(((......((((.(((( ((((((............))) )).))))).)))).....)))..)))))....)))).))))).......... 0.941 -36.00 # #block136493 chromosome:11:79438479:79438588:-1 intergenic #mouseZ9p10 chromosome:16:23609961:23610073:1 Same_strand|Boundary_non-coding|ENSMUST00000038423|ENSMUSG00000033355|protein_coding|receptor transporter protein 4 Gene [Source:MGI Symbol;Acc:MGI:1915025] ========== block138767 [novel_mirtron_randfoldOK] ========== #randfold block138767: 0.007 randfold humanZ3p10_block138767: 0.001 randfold mouseZ11p10_block138767: 0.082 #forester humanZ3p10_block138767: 0.903337 forester mouseZ11p10_block138767: 0.681487 #identity: 91.36 block138767 ACCCTCTGGCTTCTCTTCAG #rat_gr99302_libT1S1 20 1 block138767 GCTATTCAGTGGGATAGCAGAAGGGACAGC----TGGGGGAGTTCTGGGGAAGCAGTTGTGACCCTCTGGCTTCTCTTCAGCTGGACATCATGGAGC humanZ3p10 --------------------------CAGC----TGGGGGAGTTCTAGGGAAGCAATTGTGACCCTCTGACTTCTCTTCAGCTG------------- mouseZ11p10 --------------------------CAGCTAGGTAGGGGAGTACTGGGGAAGCAGTTGTGACCCTCTGGCTTTTTTTCAGCTG------------- **** * ******* ** ******** ************* *** * ******** block138767 +++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000002358 ENSRNOG00000001719 Psmd2 block138767 (((.....((((..((((.(((((((.((( ..((((.((((((......)))....)))))))..)))))))))).))))....))))..))) 0.620 -35.00 # humanZ3p10 (((( ((((((((((..((((..((....))..))))..))))))))..)))))) 1.000 -25.10 # mouseZ11p10 (((((.((.((..((((...((((..((....))..))))...))))..))))))))) 1.000 -19.00 # #block138767 chromosome:11:82485393:82485485:-1 Same_strand|Intronic_coding|ENSRNOT00000002358|ENSRNOG00000001719 ## ENSRNOG00000001719|protein_coding|Psmd2|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Source:RefSeq_peptide;Acc:NP_001026809] #humanZ3p10 chromosome:3:185503433:185503486:1 Same_strand|Boundary_coding|ENST00000310118|ENSG00000175166|protein_coding|26S proteasome non-ATPase regulatory subunit 2 (26S proteasome regulatory subunit RPN1)(26S proteasome regulatory subunit S2)(26S proteasome subunit p97)(Tumor necrosis factor type 1 receptor-associated protein 2)(55.11 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q13200] #mouseZ11p10 chromosome:16:20655899:20655956:1 Same_strand|Boundary_coding|ENSMUST00000007212|ENSMUSG00000006998|protein_coding|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 Gene [Source:MGI Symbol;Acc:MGI:1096584] ========== block138890 [novel_randfoldOK] ========== #randfold block138890: 0.004 #forester #identity: 0.00 block138890 AGCTAACCCCAGCAGTGCCACA #rat_gr162899_libT4S1 22 1 block138890 gggtttttcatgtccctgcctctgcactgctagtgttaattcctgatgctcctccacccgcacgtttaggAGCTAACCCCAGCAGTGCCACAtcttatgccc ****************************************************************************************************** block138890 ((((.....((((..........((((((((...((((.((((((((((..........)))...))))))).))))...)))))))).)))).....)))) 0.860 -29.30 # #block138890 chromosome:11:82597424:82597525:-1 intergenic ========== block139314 [novel_cloningHIGH] ========== #randfold block139314: 0.106 #forester #identity: 0.00 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT3S1 22 6 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT2S2 22 5 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT3S1 23 4 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT3S2 22 3 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT4S2 22 3 block139314 TACGTAGATCACAAACACCCA #rat_gr753256_libT4S1 21 3 block139314 TACGTAGATCACAAACACCC #rat_gr753255_libT3S2 20 3 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT4S2 23 2 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT5S2 23 2 block139314 ACGTAGATCACAAACACCCA #rat_gr113653_libT3S2 20 2 block139314 TACGTAGATCACAAACACCCA #rat_gr753256_libT1S2 21 2 block139314 TACGTAGATCACAAACACCCA #rat_gr753256_libT4S2 21 2 block139314 TACGTAGATCACAAACACCC #rat_gr753255_libT4S1 20 2 block139314 TACGTAGATCACAAACACC #rat_gr753254_libT5S2 19 2 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT1S1 23 1 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT2S1 23 1 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT3S2 23 1 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT4S1 23 1 block139314 TACGTAGATCACAAACACCCAAT #rat_gr753258_libT5S1 23 1 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT2S1 22 1 block139314 TACGTAGATCACAAACACCCAA #rat_gr753257_libT4S1 22 1 block139314 TACGTAGATCACAAACACCCA #rat_gr753256_libT3S1 21 1 block139314 TACGTAGATCACAAACACCC #rat_gr753255_libT2S1 20 1 block139314 TACGTAGATCACAAACACCC #rat_gr753255_libT4S2 20 1 block139314 TACGTAGATCACAAACACC #rat_gr753254_libT3S1 19 1 block139314 TACGTAGATCACAAACAC #rat_gr753253_libT1S2 18 1 block139314 TACGTAGATCACAAACAC #rat_gr753253_libT4S2 18 1 block139314 atgagcccctacgttagtatgtgtttgtgtttacatgcagatagtatggttgtgTACGTAGATCACAAACACCCAATgatttttgcagttta ******************************************************************************************** block139314 .(((((......((((....((((((((((((((.(((((((......))).)))).))))).)))))))))....)))).......))))) 0.590 -20.72 # #block139314 chromosome:11:83094399:83094490:-1 intergenic ========== block140175 [novel_randfoldOK] ========== #randfold block140175: 0.010 randfold mouse142p10_block140175: 0.092 #forester mouse142p10_block140175: 0.396394 #identity: 77.27 block140175 AGGCACAGCCACCTTCAGAC #rat_gr176917_libT2S2 20 1 block140175 GTTCTATGCCCCGCAGGCACAGCCACCTTCAGACCAGGAAACTATTTGAGGACTAGTTGGAGCCTGCAGGTCCAATCAGGAATC mouse142p10 --------------AGGCACAGCCACCTTCCCGTGAGGAG------TGAGG-CTCGCTGTGGCCT------------------- **************** **** ***** ** * ** **** block140175 ---------------------------------------------------------------------------------------------- #ENSRNOT00000002576 ENSRNOG00000000281 LOC680409 block140175 (((((.((..((((((((.((((...(((((((..((....)).)))))))....))))..)))))).))..))....))))). 0.830 -29.50 # mouse142p10 (((((((((..((((.((....)).. .)))) ...)))))).))) 1.000 -20.30 # #block140175 chromosome:11:84910286:84910369:-1 Opposite_strand|Intronic_coding|ENSRNOT00000002576|ENSRNOG00000000281 ## ENSRNOG00000000281|protein_coding|LOC680409| #mouse142p10 chromosome:1:133739226:133739349:-1 Opposite_strand|Intronic_coding|ENSMUST00000086559|ENSMUSG00000013275|protein_coding|solute carrier family 41, member 1 Gene [Source:MGI (curated);Acc:Slc41a1-001] ========== block140795 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block140795: 0.002 randfold mouse148p10_block140795: 0.132 #forester mouse148p10_block140795: 0.469134 #identity: 73.44 block140795 TGGGGCACTCAGGAGGCT #rat_gr1038969_libT1S1 18 15 block140795 TGGGGCACTCAGGAGGCTG--CA #rat_gr1038972_libT1S1 21 11 block140795 TGGGGCACTCAGGAGGCTG #rat_gr1038970_libT1S1 19 9 block140795 TGGGGCACTCAGGAGGCT #rat_gr1038969_libT1S2 18 5 block140795 TGGGGCACTCAGGAGGCTG--CAG #rat_gr1038973_libT1S1 22 4 block140795 TGGGGCACTCAGGAGGCTG--CAG #rat_gr1038973_libT1S2 22 2 block140795 TGGGGCACTCAGGAGGCTG--C #rat_gr1038971_libT1S2 20 2 block140795 TGGGGCACTCAGGAGGCTG #rat_gr1038970_libT1S2 19 2 block140795 AGTGGGGCACTCAGGAGGC #rat_gr200863_libT1S1 19 2 block140795 GGGGCACTCAGGAGGCTG--CA #rat_gr610890_libT1S2 20 1 block140795 TGGGGCACTCAGGAGGCTG--CA #rat_gr1038972_libT1S2 21 1 block140795 TGGGGCACTCAGGAGGCTG #rat_gr1038970_libT3S1 19 1 block140795 AGTGGGGCACTCAGGAGGCTG #rat_gr200864_libT5S2 21 1 block140795 TGGGGCACTCAGGAGGCT #rat_gr1038969_libT4S2 18 1 block140795 AGTGGGGCACTCAGGAGG #rat_gr200862_libT1S2 18 1 block140795 GGATCTCTACCCTGGTGGCCGAGTGGGGCACTCAGGAGGCTG--CAGCGACCCCGGTCCTTGCTGCTGCTCCCCAGCACCCCTTTCGGCTCCCTGGAGCCTTCC mouse148p10 ------------------------GGGGCACTCAGGAGGCTGCTCAGTTGCCCAGG--------------CACCAGTTCCTCTGGCTGCTTCCCTGGGGATTCC ****************** *** *** ** * **** ** ** * *** ** * * **** block140795 (((.(((((....((..((((((.((((..((..(((.((.( (((((((....)))...))))).)))))..))..)))).))))))..)))))))...))) 1.000 -48.20 # mouse148p10 ((((..((((((((((.((.(((.(((....) )).........))))).)))))).))))..)))) 0.205 -25.20 # #block140795 chromosome:11:85512671:85512772:-1 intergenic #mouse148p10 chromosome:2:92245959:92246100:1 Opposite_strand|Boundary_non-coding|ENSMUST00000090559|ENSMUSG00000068742|protein_coding|cryptochrome 2 (photolyase-like) Gene [Source:MGI (curated);Acc:Cry2-001] ========== block142556 [novel_randfoldOK] ========== #randfold block142556: 0.001 randfold mouseZ15p10_block142556: 0.002 #forester mouseZ15p10_block142556: 0.700495 #identity: 94.00 block142556 ACCAGCAGCAAAGTAAACAG #rat_gr91168_libT1S1 20 1 block142556 TAGTAGTTGTTTACTAACTGCAGTTGGT-AAACACAAACCAGCAGCAAAGTAAACAGTAACTG mouseZ15p10 ------TTGTTTACTAACTGCAATTGGTAAAACACAGACCAGCAGCAAAGTAAACAA------ **************** ***** ******* ******************* block142556 ((((..(((((((((...(((.(((((( ........)))))).))).)))))))))..)))) 1.000 -21.70 # mouseZ15p10 .((((((((..((((...((((.........))))))))...)))))))). 1.000 -14.90 # #block142556 chromosome:11:2188761:2188822:1 intergenic #mouseZ15p10 chromosome:16:64857610:64857711:1 Same_strand|Exonic_non-coding|ENSMUST00000067744|ENSMUSG00000054604|protein_coding|CGG triplet repeat binding protein 1 Gene [Source:MGI (curated);Acc:Cggbp1-001] ========== block146498 [novel_randfoldOK] ========== #randfold block146498: 0.001 #forester #identity: 0.00 block146498 TTGGAATAAAAATGAATTTT #rat_gr1139662_libT1S1 20 1 block146498 cttttagattggggaatagagctcaagattttaattatttttcatttttattatttttttgctaaTTGGAATAAAAATGAATTTTgttttgctctttcctctgaattgaaag **************************************************************************************************************** block146498 (((((((.((((((((.(((((.((((((............(((((((((((....((.....))....)))))))))))))))))....))))))))).)))).))))))) 0.930 -26.10 # #block146498 chromosome:11:13571766:13571877:1 intergenic ========== block147283 [novel_randfoldOK] ========== #randfold block147283: 0.001 #forester #identity: 0.00 block147283 TGTGCTCTCACTAAACACGG #rat_gr1086076_libT1S2 20 1 block147283 gagggccctggctgagcagggtcctttgtttagtgggatgactggagcacggcactcagatgctgcctggcgcTGTGCTCTCACTAAACACGGactcttctccttgccctt *************************************************************************************************************** block147283 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000009911 ENSRNOG00000001573 NP_001100584.1 block147283 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002150 ENSRNOG00000001573 NP_001100584.1 block147283 ((((((...((..(((.(((((((..(((((((((........((((((((((..((((.......)))).))))))))))))))))))).))))))).))))).)))))) 0.980 -51.60 # #block147283 chromosome:11:15852676:15852786:1 Same_strand|Intronic_non-coding|ENSRNOT00000009911|ENSRNOG00000001573 ## Same_strand|Intronic_coding|ENSRNOT00000002150|ENSRNOG00000001573 ## ENSRNOG00000001573|protein_coding|NP_001100584.1|ubiquitin specific protease 25 [Source:RefSeq_peptide;Acc:NP_001100584] ========== block150185 [novel_randfoldOK] ========== #randfold block150185: 0.006 #forester #identity: 0.00 block150185 CAGCCTGATGGTGCGGCTTGGA #rat_gr294497_libT5S2 22 2 block150185 gcacatgcagttgCAGCCTGATGGTGCGGCTTGGAgtattagggaggagaaagaagggttgcttacctcctacagcgtaacgtccagtgccgggctgtcaggcttcaagtgtggccagcg ************************************************************************************************************************ block150185 ((...((((.(((.(((((((((((.(((((((((.(((..((((((...(((........))).)))))).....)))...))))).)))).))))))))))).))).))))....)). 0.890 -50.40 # #block150185 chromosome:11:24351062:24351181:1 intergenic ========== block151455 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block151455: 0.003 #forester #identity: 0.00 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT1S1 18 3 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT1S2 18 2 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT5S1 18 2 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT5S2 18 2 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT3S2 18 1 block151455 TAACACCACCCAGGGCTA #rat_gr713340_libT4S2 18 1 block151455 TAACACCACCCAGGGCTAT #rat_gr713341_libT1S1 19 1 block151455 TAACACCACCCAGGGCTAT #rat_gr713341_libT2S1 19 1 block151455 TAACACCACCCAGGGCTAT #rat_gr713341_libT4S2 19 1 block151455 tcttttgggattgcacTAACACCACCCAGGGCTATtggaccatgctgcagtttcttccagcagcttctccagagttcatttggagtcagtgttaggcactcatggaaga ************************************************************************************************************* block151455 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000050073 ENSRNOG00000001575 Grik1 block151455 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000046043 ENSRNOG00000001575 Grik1 block151455 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000042581 ENSRNOG00000001575 Grik1 block151455 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000051060 ENSRNOG00000001575 Grik1 block151455 ((((((..((.(((.(((((((.((((((((((.(((((....(((((...........)))))...))))))))))...))).))..)))))))))).))..)))))) 0.840 -38.00 # #block151455 chromosome:11:28037256:28037364:1 Opposite_strand|Intronic_coding|ENSRNOT00000051060|ENSRNOG00000001575 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000002142|ENSRNOG00000001575 ## ENSRNOG00000001575|protein_coding|Grik1|Glutamate receptor, ionotropic kainate 1 precursor (Glutamate receptor 5) (GluR-5) (GluR5). [Source:UniProtKB/Swiss-Prot;Acc:P22756] ========== block152988 [novel_randfoldOK] ========== #randfold block152988: 0.001 #forester #identity: 0.00 block152988 CTCCCCCATGAGCCAATGAGG #rat_gr423089_libT5S1 21 1 block152988 cggaggagagcgggccggtgctcgctgattggctcgtgggtggagcgagcccgtgcggacgCTCCCCCATGAGCCAATGAGGgaagggataaaaggaattggccgctgcgcctcctcc ********************************************************************************************************************** block152988 .(((((((.((((((((((..((.((.(((((((((((((.((((((...((....)).))))))))))))))))))).)).)).............)))))))....)))))))))) 0.950 -68.16 # #block152988 chromosome:11:31620874:31620991:1 intergenic ## {SimpF: oe = 0.89 1 CpG} ========== block153854 [novel_randfoldOK] ========== #randfold block153854: 0.002 randfold mouseZ23p10_block153854: 0.001 #forester mouseZ23p10_block153854: 0.764195 #identity: 87.10 block153854 TGACTGTGTGAGTGTTCACAC #rat_gr938506_libT2S1 21 1 block153854 GGTCTGTATTCAGTGTGTTAATGACTGTGTGAGTGTTCACACCTATATGGATACATGTATGTGTGGGGTCACTTGTACAAGTGCGTCCGCATGTATAGAGGTCA mouseZ23p10 ---------------------TGACTGTGTGAGTGTCCACACCTATATGGATACATGTACGTGTGGTGTTACTTGCACTTGTA--------------------- *************** ********************** ****** ** ***** ** ** block153854 (((((.(((...(((((...(((((((((..((((.((((((.((((((....)))))).))))))...))))..)))).)).))).)))))..))).))))). 1.000 -36.50 # mouseZ23p10 ..((.(((..((((.((((((.((((((....)))))).))))))...))))..)))..)). 1.000 -27.60 # #block153854 chromosome:11:33373383:33373486:1 intergenic #mouseZ23p10 chromosome:16:93117883:93118026:1 intergenic ## {Repeats: trf 0 class=trf} ========== block155563 [novel_randfoldOK] ========== #randfold block155563: 0.001 #forester #identity: 0.00 block155563 AGTACTATGATCTAACTCCC #rat_gr195098_libT1S1 20 2 block155563 agcatgtccttgtcgggagttagtttcatggtctcaccAGTACTATGATCTAACTCCCtaagctattatgaccccaatgc ******************************************************************************** block155563 .(((((((((((..(((((((((..(((((((((....)).))))))).))))))))))))).......)))....)))) 0.880 -25.11 # #block155563 chromosome:11:36857190:36857269:1 intergenic ========== block163900 [novel_lenNOK_cloningHIGH_randfoldOK] ========== #randfold block163900: 0.001 randfold mouseZ25p10_block163900: 0.001 #forester mouseZ25p10_block163900: 1 #identity: 100.00 block163900 CTAAGGCAGGCAGACTTCAG #rat_gr408242_libT1S2 20 36 block163900 CTAAGGCAGGCAGACTTCA #rat_gr408241_libT1S2 19 35 block163900 CTAAGGCAGGCAGACTTCAG #rat_gr408242_libT1S1 20 28 block163900 CTAAGGCAGGCAGACTTCAGTG #rat_gr408244_libT1S2 22 28 block163900 CTAAGGCAGGCAGACTTC #rat_gr408240_libT1S1 18 18 block163900 CTAAGGCAGGCAGACTTCA #rat_gr408241_libT1S1 19 17 block163900 CTAAGGCAGGCAGACTTCAGT #rat_gr408243_libT1S2 21 15 block163900 CTAAGGCAGGCAGACTTC #rat_gr408240_libT1S2 18 12 block163900 CTAAGGCAGGCAGACTTCAGTG #rat_gr408244_libT1S1 22 6 block163900 CTAAGGCAGGCAGACTTCAGT #rat_gr408243_libT1S1 21 3 block163900 CTAAGGCAGGCAGACTTCAGTGT #rat_gr408245_libT1S2 23 3 block163900 CTAAGGCAGGCAGACTTCAGTG #rat_gr408244_libT4S2 22 1 block163900 CTAAGGCAGGCAGACTTCAGTGT #rat_gr408245_libT1S1 23 1 block163900 ---------------CTGGGCAAAGGCTCTCCTAAGGCAGGCAGACTTCAGTGTTGCCCATTTCTCAGTTCTCTGAAGCTTGCTTACCTCCAAAGGGCCTTTGCCATAG----------------- mouseZ25p10 CGATGTAAGGAATAACTGGGCAAAGGCTCTCCTAAGGCAGGCAGACTTCAGTGTTGCCCATTTCTCAGTTCTCTGAAGCTTGCTTACCTCCAAAGGGCCTTTGCCATAGCCCTGTACCTTGTCCCG ********************************************************************************************** block163900 ...((((((((((((....(((.(((((..((((((....((..........))...))))))..))))).)))....)))))))))))).... 1.000 -39.80 # mouseZ25p10 .....(((((.(((.(((((((((((((((....(((.(((((..((((((....((..........))...))))))..))))).)))....)))))))))))).)))...))).)))))..... 0.996 -45.00 # #block163900 chromosome:11:60026016:60026109:1 intergenic #mouseZ25p10 chromosome:16:42303465:42303590:-1 Same_strand|Intronic_coding|ENSMUST00000102817|ENSMUSG00000047261|protein_coding|growth associated protein 43 Gene [Source:MGI (curated);Acc:Gap43-001] ========== block165802 [novel_randfoldOK] ========== #randfold block165802: 0.006 #forester #identity: 0.00 block165802 TCCCTTTCCTTCCTCTCCTC #rat_gr866029_libT1S1 20 1 block165802 TCCCTTTCCTTCCTCTCCTC #rat_gr866029_libT1S2 20 1 block165802 gcattcaaacctTCCCTTTCCTTCCTCTCCTCtcctctgagagagaaaggggtgggtctggaagt ***************************************************************** block165802 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000041715 ENSRNOG00000002496 Stxbp5l_predicted block165802 .........((..(((.((((((.((((.(((......))))))).)))))).)))...)).... 1.000 -23.00 # #block165802 chromosome:11:65126907:65126971:1 Same_strand|Boundary_non-coding|ENSRNOT00000048936|ENSRNOG00000002496 ## Same_strand|Intronic_non-coding|ENSRNOT00000041715|ENSRNOG00000002496 ## ENSRNOG00000002496|protein_coding|Stxbp5l_predicted| ========== block166713 [novel_randfoldOK] ========== #randfold block166713: 0.001 #forester #identity: 0.00 block166713 TTGGAGCCGGGGATGGGGGGG #rat_gr1141977_libT2S2 21 1 block166713 tcctctgccctcagcctcctgtccctccctgtgctccgagtcagaccttgagagtgcagtttagatcctatctatcTTGGAGCCGGGGATGGGGGGGtgggggggggcttggac ****************************************************************************************************************** block166713 (((...((((((..((.(((.(((.((((((.((((((((..(((....((.((......))...))...)))..)))))))))))))).))).))).))..))))))..))). 0.480 -56.30 # #block166713 chromosome:11:67012984:67013097:1 intergenic ## {Repeats: dust 67013078 67013090 0 class=dust} ========== block166875 [novel_randfoldOK] ========== #randfold block166875: 0.008 #forester #identity: 0.00 block166875 CTGCTGAGTTCCCTGTCATCT #rat_gr445118_libT2S1 21 1 block166875 ggggaaggacagacagcaggagacgctcctgcagagggaagcaagtgagtctgtcaccattccatccacatctCTGCTGAGTTCCCTGTCATCTatacccgtacccct ************************************************************************************************************ block166875 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------------------------------------- #ENSRNOT00000049180 ENSRNOG00000002229 Adcy5 block166875 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------------------------------------- #ENSRNOT00000029929 ENSRNOG00000002229 Adcy5 block166875 ((((..((..(((..(((((.((.((((..((((((((((....((((.....))))..))))........)))))).)))))))))))..)))....))...)))). 1.000 -39.00 # #block166875 chromosome:11:67341107:67341214:1 Opposite_strand|Intronic_coding|ENSRNOT00000029929|ENSRNOG00000002229 ## ENSRNOG00000002229|protein_coding|Adcy5|Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5). [Source:UniProtKB/Swiss-Prot;Acc:Q04400] ========== block169731 [novel_randfoldOK] ========== #randfold block169731: 0.005 #forester #identity: 0.00 block169731 TCTTGTAGGAGTCCTTCCTC #rat_gr914345_libT5S2 20 1 block169731 ccttaTCTTGTAGGAGTCCTTCCTCgatcttgcaaggtgccggcatgcagctttgattacaaggtcaggcccagagaccttgcaggcttgtttgaatggtcctgtgaggcagggg ******************************************************************************************************************* block169731 ((((..((..(((((..(((((..(((.((((((((((...(((.((..((((((....)))))))).))).....)))))))))).)))...))).)))))))..))..)))). 0.990 -45.80 # #block169731 chromosome:11:72899003:72899117:1 intergenic ========== block174914 [novel_cloningOK] ========== #randfold block174914: 0.012 #forester #identity: 0.00 block174914 TGACCAAATGACCTATGCTGT #rat_gr933645_libT5S1 21 9 block174914 TGACCTATGCTGTTTTCCAGATATG #rat_gr935371_libT5S1 25 2 block174914 TCCTGACCAAATGACCTAT #rat_gr876221_libT5S1 19 1 block174914 TGACCAAATGACCTATGCTGT #rat_gr933645_libT2S1 21 1 block174914 GACCTATGCTGTTTTCCAGA #rat_gr497078_libT5S1 20 1 block174914 cctgtgccaagagaagggcaatggctggcccagagatggcaaaggcctgggtcaatccTGACCAAATGACCTATGCTGTtttccagatatgcagaccacatcctgtctctttttcacagt ************************************************************************************************************************ block174914 .(((((..((((((.(((...(((((((....(((((((((.(((....(((((....)))))......))).))))))))))))).........)))...))).))))))...))))). 0.760 -39.40 # #block174914 chromosome:11:84966347:84966466:1 intergenic ========== block175072 [novel_randfoldOK] ========== #randfold block175072: 0.009 #forester #identity: 0.00 block175072 TATGAAGCTGCACTTTCCCTC #rat_gr795742_libT1S1 21 1 block175072 gctcatcgagtagccttggttggggctggcttggaTATGAAGCTGCACTTTCCCTCtcctgcccagagaagctgttacttcagttatcctgagctgcttctacctctactctccttgc ********************************************************************************************************************** block175072 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000000311 ENSRNOG00000029216 Dgcr2 block175072 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000043210 ENSRNOG00000029216 Dgcr2 block175072 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000037324 ENSRNOG00000029216 Dgcr2 block175072 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000052250 ENSRNOG00000029216 Dgcr2 block175072 ((.....((((((....(((.(((((.(((((((((((((((..((((((...((((.......))))))).)))..)))))..))))).)))))))))).))).)))))).....)) 1.000 -39.00 # #block175072 chromosome:11:85089492:85089609:1 Same_strand|Intronic_coding|ENSRNOT00000043210|ENSRNOG00000029216 ## ENSRNOG00000029216|protein_coding|Dgcr2|DiGeorge syndrome critical region gene 2 [Source:RefSeq_peptide;Acc:NP_001012146] ========== block175383 [novel_randfoldOK] ========== #randfold block175383: 0.002 #forester #identity: 0.00 block175383 TGGAACTGTCCCTTCTGCTCT #rat_gr982877_libT3S1 21 1 block175383 ggctgaagtatgaagtagaaggacagctcccgggatcctcagtaactTGGAACTGTCCCTTCTGCTCTacacttgcagtc ******************************************************************************** block175383 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002549 ENSRNOG00000001866 Pik4ca block175383 (((((((((.((.(((((((((((((.(((.((............)).))).)))))).))))))).)).)))).))))) 1.000 -32.30 # #block175383 chromosome:11:85646836:85646915:1 Same_strand|Intronic_coding|ENSRNOT00000002549|ENSRNOG00000001866 ## ENSRNOG00000001866|protein_coding|Pik4ca|phosphatidylinositol 4-kinase a [Source:RefSeq_peptide;Acc:NP_071637] ========== block175878 [novel_randfoldOK] ========== #randfold block175878: 0.006 #forester #identity: 0.00 block175878 AGGAGACTTCAGGACACACAC #rat_gr172969_libT2S1 21 1 block175878 ctgtagctAGGAGACTTCAGGACACACACtaaagacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgtgctgaggttgtcattaactaggga ************************************************************************************************************* block175878 ((.(((.(((..((((((((.((((((((.....(((((..((..((..((....))..))..))..)))))..))))))...)).))))))))....))).))).)). 0.710 -33.10 # #block175878 chromosome:11:86608544:86608652:1 intergenic ========== block180410 [novel_randfoldOK] ========== #randfold block180410: 0.002 #forester #identity: 0.00 block180410 TGTTCTGTGTGATTGGGTTAG #rat_gr1092607_libT1S1 21 1 block180410 gcagcatagctatgtctcggtgttatagactagcccatctggcacaggacgtaaacctttatggatgTGTTCTGTGTGATTGGGTTAGgctgttacaacggaaacactacaagcgtgcgc ************************************************************************************************************************ block180410 ((.((((.(((.(((.((.((((.((((.((((((((....((((((((((....((.....))...))))))))))...)))))))).)))).)).)).)).))).....))))))))) 0.710 -43.50 # #block180410 chromosome:12:7567461:7567580:-1 intergenic ========== block180651 [novel_randfoldOK] ========== #randfold block180651: 0.008 #forester #identity: 0.00 block180651 TTTGTATTTCTTTTTTCCTG #rat_gr1172756_libT1S2 20 1 block180651 cccttctcacagggaaggaattagactttgcatgcgcatgctcagtttagatgtttgtttttgtTTTGTATTTCTTTTTTCCTGagaagg ****************************************************************************************** block180651 ---------------------------------------------------------------------------------------------------- #ENSRNOT00000001248 ENSRNOG00000000940 Flt1 block180651 .((((((((..(((((((((....((...(((...(((.((((......)).)).)))...)))...))..)))))))))..)))))))) 0.480 -25.20 # #block180651 chromosome:12:7959059:7959148:-1 Opposite_strand|Intronic_coding|ENSRNOT00000001248|ENSRNOG00000000940 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061189|ENSRNOG00000000940 ## ENSRNOG00000000940|protein_coding|Flt1|Vascular endothelial growth factor receptor 1 precursor (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase receptor FLT) (FLT-1). [Source:UniProtKB/Swiss-Prot;Acc:P53767] ## {Repeats: dust 7959069 7959085 0 class=dust} ========== block183874 [novel_randfoldOK] ========== #randfold block183874: 0.002 randfold mouse474p11_block183874: 0.297 #forester mouse474p11_block183874: 0.443004 #identity: 78.38 block183874 CCTCTTTCCAGGAGACAGGTTCC #rat_gr377116_libT2S2 23 1 block183874 GGGCTCTCCACCAGCATTGTCAGGGGCCTAGTCTC-TCCTGCAAGGAGATCTGACTAGTTGTCAGAACTATGT-----GAAACCTCTTTCCAGGAGACAGGTTCCCCTCTGGCTGGCCCA mouse474p11 ----TCT--------------------TTAGTCTTATCCTGTAAGGTAGTCTGACAAGTTGTTACAACTATATATTTAAAAATCTCTTTCCAGGAGACAAAGTG---------------- *** ****** ***** **** ****** ****** * ****** * *** **************** * block183874 ++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000031149 ENSRNOG00000001103 RGD1560686_predicted block183874 (((((.....((((.......((((((((....(( (((((.((((((.((((((.....))))))....... .....)))))).))))))).)))..)))))))))..))))). 0.550 -44.23 # mouse474p11 .(( ((.(((...(((((.((((((((.((((.....))))..))))...............)))).)))))))))))).. 0.611 -12.96 # #block183874 chromosome:12:12954267:12954380:-1 Same_strand|Intronic_coding|ENSRNOT00000031149|ENSRNOG00000001103 ## ENSRNOG00000001103|protein_coding|RGD1560686_predicted| #mouse474p11 chromosome:4:64005464:64005617:1 intergenic ========== block184157 [novel_randfoldOK] ========== #randfold block184157: 0.001 randfold human460p11_block184157: 0.106 randfold mouse500p11_block184157: 0.372 #forester human460p11_block184157: 0.395883 forester mouse500p11_block184157: 0.381907 #identity: 64.49 block184157 AGGAAGTAGTCAAAGGCTGAG #rat_gr170273_libT1S1 21 1 block184157 GAGGGAATGATATTAACAATTAAAC----AGGAAGTAGTCAAAGGCTGAGGTGTTC----AAGAGCTAATTGTCGGGCTCAGTCCTCGGCTCT-CTGCTGCTTCCCGGTTGGTTATTTGTATTTTCCTT human460p11 -------------------TAAGAC----AGGAAGTAGTCAAAGT------TGGTC----TAGAAT--ATTGTT---CTGAGCCCCTGCCCCTCCCCCTGCTTCCCA---------------TTTCTTG mouse500p11 ----------GATCATAGATAATACTCTGAGGAAGTAGTCAAAGCATGTAGTGTACTTCATGGTAATAGTTGTC-AGCCAAGCACACACAGAT--GGTTGTTCTCCAGGCCACTGTCTAGATT------ * * ** *************** ** * * **** * ** * * ** * ** * block184157 .((((((.(((((.((.((((((.. .((((((((.((.(((((((((..... ..(((((........)))))...))))))).)) .))))))))))...)))))).)).))))))))))) 1.000 -43.50 # human460p11 (((((. .((((((((.....(( .((.. (((((( ...))) )))..))...))........)))))))).. ..))))) 0.998 -18.12 # mouse500p11 ((((.((((((....((((..(((.((..((.....(((.((((.((...((((.......... .)))))).)))))))..) )..)))))..))))....)))))))))) 0.948 -24.20 # #block184157 chromosome:12:13567498:13567617:-1 intergenic #human460p11 chromosome:1:176165178:176165253:1 Opposite_strand|Boundary_non-coding|ENST00000239472|ENSG00000120341|protein_coding|Protein transport protein Sec16B (Protein SEC16 homolog B)(Regucalcin gene promoter region-related protein p117)(RGPR-p117)(Leucine zipper transcription regulator 2) [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7] ## Opposite_strand|Exonic_non-coding|ENST00000308284|ENSG00000120341|protein_coding|Protein transport protein Sec16B (Protein SEC16 homolog B)(Regucalcin gene promoter region-related protein p117)(RGPR-p117)(Leucine zipper transcription regulator 2) [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7] #mouse500p11 chromosome:3:7867289:7867398:-1 intergenic ## {Repeats: AT_rich -1 class=Low_complexity} ========== block187071 [novel_randfoldOK] ========== #randfold block187071: 0.003 randfold human478p11_block187071: 0.068 #forester human478p11_block187071: 0.432769 #identity: 66.00 block187071 GCTGAGCACCCCAGGCTCCAC #rat_gr571585_libT1S1 21 1 block187071 GACAGTGGCCCTAGCTGAGCACCCCAGGCTCCACTTGTCACGATGGGGAGCCTAG---TGGAGTTCAGAAGGGTCTGGTCT human478p11 -------------GCTGAGCACCCCAGG------------AGCTGCAGAGGCCAGATCCCCAGCTGTGGGGGCACAGG--- *************** * ** *** * ** ** * * ** * ** block187071 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++ #ENSRNOT00000001825 ENSRNOG00000001349 Mcm7 block187071 (((...((((((..((((((.((..(((((((.((.........))))))))).. .)).)))))).))))))..))). 1.000 -37.80 # human478p11 .(((.((.(((((.. (((((..((.......))..))))).))))))).))). 1.000 -22.80 # #block187071 chromosome:12:17608087:17608164:-1 Same_strand|Intronic_coding|ENSRNOT00000001825|ENSRNOG00000001349 ## ENSRNOG00000001349|protein_coding|Mcm7|minichromosome maintenance complex component 7 [Source:RefSeq_peptide;Acc:NP_001004203] #human478p11 chromosome:1:116792975:116793092:-1 intergenic ========== block187130 [novel_randfoldOK] ========== #randfold block187130: 0.009 #forester #identity: 0.00 block187130 CAAGGACTTCTGTGTTCCCAGT #rat_gr269959_libT5S2 22 1 block187130 gcctttgtgtgcgccactcagttgggagcagaaagggtctcagggtggcttgagccCAAGGACTTCTGTGTTCCCAGTaaacattcccgcacacccagaggtc ******************************************************************************************************* block187130 (((((((((((((........(((((((((...(((((((..((((.......))))..))))).)).)))))))))..........)))))))..)))))). 0.790 -40.57 # #block187130 chromosome:12:17683349:17683451:-1 intergenic ========== block187997 [novel_randfoldOK] ========== #randfold block187997: 0.009 #forester #identity: 0.00 block187997 TCCCTGATCCTTCCTCCTGTTGC #rat_gr859097_libT1S1 23 1 block187997 ttccagagggccctgtcagggttgggttccatgtggtaggaaagccagggcttttgtctttcagttcaTCCCTGATCCTTCCTCCTGTTGCctctccagtgccctgtgggac **************************************************************************************************************** block187997 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> #ENSRNOT00000001911 ENSRNOG00000001409 Gnb2 block187997 (((((.(((((.(((...(((..((((..((...((.((((....(((((...(((.....))).....))))).)))).))...))..)))))))))).))))).))))). 0.850 -41.60 # #block187997 chromosome:12:19598361:19598472:-1 Same_strand|Intronic_coding|ENSRNOT00000001911|ENSRNOG00000001409 ## ENSRNOG00000001409|protein_coding|Gnb2|Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 (Transducin beta chain 2) (G protein subunit beta-2). [Source:UniProtKB/Swiss-Prot;Acc:P54313] ========== block188259 [novel_randfoldOK] ========== #randfold block188259: 0.001 #forester #identity: 0.00 block188259 CTTACAATTTCTCCCTTTCCCC #rat_gr458250_libT2S2 22 1 block188259 agggtggagactgggatcatggctcagttgatagagagaggggagagtgtggggtgtgccacCTTACAATTTCTCCCTTTCCCCtgatcccttctcttcccagctctaaccct ***************************************************************************************************************** block188259 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000059611 ENSRNOG00000001404 NP_001100601.1 block188259 --------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000059593 ENSRNOG00000024616 MGC125073 block188259 --------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000059592 ENSRNOG00000024616 MGC125073 block188259 --------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000039280 ENSRNOG00000024616 MGC125073 block188259 (((((((((.((((((....((.((((......(((((.(((((((.(((((((((...))))))))).))))))))))))..)))).)).......))))))))))).)))) 0.610 -52.60 # #block188259 chromosome:12:19818117:19818229:-1 Opposite_strand|Intronic_coding|ENSRNOT00000059593|ENSRNOG00000024616 ## Same_strand|Boundary_non-coding|ENSRNOT00000032213|ENSRNOG00000001404 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000001869|ENSRNOG00000024616 ## Same_strand|Intronic_coding|ENSRNOT00000059611|ENSRNOG00000001404 ## ENSRNOG00000001404|protein_coding|NP_001100601.1|HIV-1 Rev binding protein-like [Source:RefSeq_peptide;Acc:NP_001100601] ## ENSRNOG00000024616|protein_coding|MGC125073|similar to TSC22 domain family protein 4 (TSC22-related-inducible leucine zipper protein 2) [Source:RefSeq_peptide;Acc:NP_001037749] ========== block190969 [novel_randfoldOK] ========== #randfold block190969: 0.005 randfold mouseZ6p12_block190969: 0.350 #forester mouseZ6p12_block190969: 0.417465 #identity: 86.05 block190969 CCACTGACCAGAGCCTAAGCTAGG #rat_gr329681_libT1S2 24 1 block190969 CTCATGATGCAAGGCCACTGACCAGAGCCTAAGCTAGGCCCCTGCTGCCTGCTTGGGCCTTCGTGCTAGCTCTTCATGAT mouseZ6p12 --------------CCACTGACCAGAACCTGAGGGAGGCCCCTTCTGCCTGCCTGGG----------------------- ************ *** ** ******** ******** **** block190969 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000059227 ENSRNOG00000001457 Rfc2 block190969 .((((((.((..((.(((.((..((.((((((((.((((.......))))))))))))))))))))).))...)))))). 0.720 -31.50 # mouseZ6p12 .............(((.(((.((((.......)))).)))))) 0.737 -13.20 # #block190969 chromosome:12:23013249:23013328:-1 Same_strand|Boundary_non-coding|ENSRNOT00000001989|ENSRNOG00000001457 ## Same_strand|Intronic_non-coding|ENSRNOT00000059227|ENSRNOG00000001457 ## ENSRNOG00000001457|protein_coding|Rfc2|replication factor C 2 [Source:RefSeq_peptide;Acc:NP_446238] #mouseZ6p12 chromosome:5:135237641:135237760:1 intergenic ========== block193858 [novel_randfoldOK] ========== #randfold block193858: 0.004 #forester #identity: 0.00 block193858 TCAGGCCCGGGATCTTTGCCTCT #rat_gr819288_libT5S1 23 2 block193858 agaaccTCAGGCCCGGGATCTTTGCCTCTgcctcccagggtctgagactccaggcctgggcctctc ****************************************************************** block193858 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000038092 ENSRNOG00000024352 NP_001100607.1 block193858 (((..((((((((.((..((((.(((.(((.....))))))..))))..)).))))))))..))). 0.990 -31.60 # #block193858 chromosome:12:27370551:27370616:-1 Same_strand|Intronic_coding|ENSRNOT00000038092|ENSRNOG00000024352 ## ENSRNOG00000024352|protein_coding|NP_001100607.1|radical S-adenosyl methionine and flavodoxin domains 1 [Source:RefSeq_peptide;Acc:NP_001100607] ========== block193910 [novel_randfoldOK] ========== #randfold block193910: 0.005 randfold human60p12_block193910: 0.007 #forester human60p12_block193910: 0.311952 #identity: 69.33 block193910 CTTTGTGCTGGTTCTGAAGTTCTC #rat_gr474287_libT5S1 24 1 block193910 TGGCTTTGTGCCTTCTTTGTGCTGGCTTTGTGCTGGTTCTGAAGTTCTCGCCTTGCAGGAGGAAGAGCC-CTGTGAGAGCAGCAGCGAGGACGAGCACGGGACCAAGGGTTATCAGAGCCT- human60p12 -------------------------CTTTGTGCTGGTTCTGAA-------------AGGCAGAGTGGCCTCTCTGAGGGTCTCAGCACAGGT---CACAGGCTCAG----TACCAGCCACTG ****************** *** ** *** ** **** * **** * *** ** ** ** *** ** block193910 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>> #ENSRNOT00000038092 ENSRNOG00000024352 NP_001100607.1 block193910 .(((((((.(((((........(((..(((((((.(((((...(((((.((((..((((.........) )))..)).)))).))).))))).)))))))..))))))))...))))))). 0.970 -50.90 # human60p12 ...((.((((((.((((. ..((...(((((((..(((((...)))))...)))) )))..)))))) .))))))))... 1.000 -32.60 # #block193910 chromosome:12:27436680:27436799:-1 Same_strand|Intronic_coding|ENSRNOT00000038092|ENSRNOG00000024352 ## ENSRNOG00000024352|protein_coding|NP_001100607.1|radical S-adenosyl methionine and flavodoxin domains 1 [Source:RefSeq_peptide;Acc:NP_001100607] ## {Repeats: trf 1 9 0 class=trf,trf 1 12 0 class=trf} #human60p12 chromosome:20:38834346:38834505:1 intergenic ========== block196374 [novel_randfoldOK] ========== #randfold block196374: 0.002 #forester #identity: 0.00 block196374 ACCCTGGTATCTCAGCTCCC #rat_gr99742_libT2S2 20 1 block196374 gcccctctggggtgttggggtgccatgggctagagagctgagttaggctaggtagccactcccctctagtgccacccacctgtccctttctACCCTGGTATCTCAGCTCCCtacacggga ************************************************************************************************************************ block196374 .(((...(((((.((((((((((((.(((.(((((((..((..((((...(((.((.(((.......))))).)))..)))))).)))))))))))))))))))))).)))))...))). 0.740 -53.90 # #block196374 chromosome:12:32204528:32204647:-1 intergenic ========== block198023 [novel_randfoldOK] ========== #randfold block198023: 0.001 #forester #identity: 0.00 block198023 GGGAGGAGGGTGGGACATGT #rat_gr604618_libT5S1 20 1 block198023 aagagcctcagcctaggggttgacagccactccccaccctcagtttcttctccagaactcgcctctgagtcactgggtgtggGGGAGGAGGGTGGGACATGTtccccttgaacgggctct ************************************************************************************************************************ block198023 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000057662 ENSRNOG00000001336 RGD1311873 block198023 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001806 ENSRNOG00000001336 RGD1311873 block198023 .(((((((......(((((..((((.......(((((((((..(((((..(((((.(((((....)))))..)))))...)))))..)))))))))...))))))))).....))))))) 0.970 -54.20 # #block198023 chromosome:12:34645520:34645639:-1 Same_strand|Intronic_coding|ENSRNOT00000001806|ENSRNOG00000001336 ## ENSRNOG00000001336|protein_coding|RGD1311873|Calcium release-activated calcium channel protein 1 (Protein orai-1) (Transmembrane protein 142A). [Source:UniProtKB/Swiss-Prot;Acc:Q5M848] ========== block198433 [novel_mirtron_randfoldOK] ========== #randfold block198433: 0.003 #forester #identity: 0.00 block198433 GTGAGAACAGGACTGTGAGC #rat_gr644522_libT3S2 20 1 block198433 gccagcaaacaggaggatgGTGAGAACAGGACTGTGAGCgtgcaagagtgtgtgtgtgcgcgtgcgtgcacgtgtgtagccatcctgtctctctgtcttactcttggcattggt ****************************************************************************************************************** block198433 >>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000011499 ENSRNOG00000008673 NP_001099403.1 block198433 (((((....(((((((((((.(((.((((((..((..(((((((...((..(((....)))..)).))))))).....))..))))))))).)))))...))))))...))))) 0.990 -47.90 # #block198433 chromosome:12:35368962:35369075:-1 Same_strand|Boundary_coding|ENSRNOT00000011499|ENSRNOG00000008673 ## ENSRNOG00000008673|protein_coding|NP_001099403.1|actin related protein 2/3 complex, subunit 3 [Source:RefSeq_peptide;Acc:NP_001099403] ## {Repeats: dust 35369037 35369043 0 class=dust} ========== block198636 [novel_randfoldOK] ========== #randfold block198636: 0.004 #forester #identity: 0.00 block198636 CTGAAAGGGGGAGGGGGAGA #rat_gr434157_libT2S1 20 1 block198636 agcaaacaaggctcttagctgagccgcctctccagccccattactttctctgaaagagccaatcctcagaCTGAAAGGGGGAGGGGGAGAcaaagtggtcacagtaggaggctgtgaggc ************************************************************************************************************************ block198636 .((..((.((.(((((.((((.(((((((((((..((((....((((((((((..((.....)).)))))..)))))))))..)))))).....)))))..))))))))).))))...)) 0.720 -46.60 # #block198636 chromosome:12:35607945:35608064:-1 intergenic ========== block198747 [novel_randfoldOK] ========== #randfold block198747: 0.001 #forester #identity: 0.00 block198747 TGGGGGTGGGGATGGGAGGG #rat_gr1043676_libT2S1 20 1 block198747 TGGGGGTGGGGATGGGAGGG #rat_gr1043676_libT3S1 20 1 block198747 tgggaatgggggtgcagtagggTGGGGGTGGGGATGGGAGGGttggaggtagcttcctgctcccctcctaacccagtcccaaatttcaaaccactcccctctgctgagtcaccatctcct ************************************************************************************************************************ block198747 .((..((((.((..((((((((.((((((((.(((((((((((((((((.(((.....)))..))))).)))))..)))))....))...))))))))))))))))..)).))))..)). 1.000 -66.90 # #block198747 chromosome:12:35771799:35771918:-1 intergenic ========== block199186 [novel_randfoldOK] ========== #randfold block199186: 0.001 #forester #identity: 0.00 block199186 GCATATGCCATAAACACACTCT #rat_gr537022_libT3S1 22 1 block199186 CATATGCCATAAACACACTC #rat_gr308451_libT3S1 20 1 block199186 gactgcagtggtttttttagtattatatacatgaagagtgtgtatatggcatatacatatataatGCATATGCCATAAACACACTCTtcgtggtatataatttgcatcg ************************************************************************************************************* block199186 ((.(((((.............((((((((((((((((((((((.((((((((((.(((.....))).)))))))))).)))))))))))))).))))))))))))))). 0.720 -47.61 # #block199186 chromosome:12:36441185:36441293:-1 intergenic ========== block199383 [novel_randfoldOK] ========== #randfold block199383: 0.005 randfold mouse143p12_block199383: 0.006 #forester mouse143p12_block199383: 0.399222 #identity: 89.19 block199383 CTGAGCTCGGCTTCCAGCTCCTG #rat_gr438982_libT1S2 23 1 block199383 CCTGAGCTCGGCTTCCAGCTCCTG #rat_gr377912_libT3S2 24 1 block199383 TCTATACACTCAGGAGAAG-AGGGGAACTGAGTCAGGAAACCGCCAGAAGGTGGTTGGTGACTCCTGAGCTCGGCTTCCAGCTCCTGCAAACGTTTTAGGC mouse143p12 ------------GTAGAAGAAGGGAAACGGAATCAGGAAACCA-CAGAAGGTGGCTGGTGGCTCCTGAGCTCGGCTTCCATCTCCTGC------------- * ***** **** *** ** ********** ********** ***** ******************* ******* block199383 ((((.((...((((((... ..((((.((((((((((((((((((....)))))))......)))))).))))).))))..)))))).....))..)))). 0.990 -39.40 # mouse143p12 ((((.(((.((((..(((..((((((..((( (...((....)).)))).))))))..)))..)))).))).)))) 0.996 -30.00 # #block199383 chromosome:12:36760498:36760597:-1 intergenic #mouse143p12 chromosome:5:121262342:121262416:-1 Same_strand|Boundary_non-coding|ENSMUST00000111858|ENSMUSG00000001166|protein_coding|2'-5' oligoadenylate synthetase 1C Gene [Source:MGI (curated);Acc:Oas1c-001] ## Same_strand|Intronic_non-coding|ENSMUST00000117193|ENSMUSG00000001166|protein_coding|2'-5' oligoadenylate synthetase 1C Gene [Source:MGI (curated);Acc:Oas1c-001] ========== block199412 [novel_randfoldOK] ========== #randfold block199412: 0.005 randfold mouse152p12_block199412: 0.012 #forester mouse152p12_block199412: 0.553972 #identity: 88.73 block199412 CTGAGCTCGGCTTCCAGCTCCTG #rat_gr438982_libT1S2 23 1 block199412 CCTGAGCTCGGCTTCCAGCTCCTG #rat_gr377912_libT3S2 24 1 block199412 AGGCTCCTGAGCTCGGCTTC #rat_gr182180_libT5S2 20 1 block199412 GTAATCTTTAAACTCAGGAGAAGAGGGGAGACCGATTCAGGAAACTGCAGAAGGTGGCTGGAGGCTCCTGAGCTCGGCTTCCAGCTCCTGCAAACGTTTTAGGCGGAC mouse152p12 ------------------AGAAGAAGGGAAACGGAATCAGGAAACCACAGAAGGTGGCTGGTGGCTCCTGAGCTCGGCTTCCATCTCCT------------------- ****** **** ** ** ********* ************** ********************* ***** block199412 ((...(((.((((.((((((.....(((((.(((((((((((..((.(((.......))).))..))))))).)))))))))..)))))).....)))).)))...)) 0.540 -41.10 # mouse152p12 ((.(((.((((..(((..((((((..((((...((....)).)))).))))))..)))..)))).))).)) 0.996 -26.00 # #block199412 chromosome:12:36805729:36805836:-1 intergenic #mouse152p12 chromosome:5:121262305:121262452:-1 Same_strand|Boundary_non-coding|ENSMUST00000111858|ENSMUSG00000001166|protein_coding|2'-5' oligoadenylate synthetase 1C Gene [Source:MGI (curated);Acc:Oas1c-001] ## {Repeats: dust 0 class=dust} ========== block200765 [novel_randfoldOK] ========== #randfold block200765: 0.004 #forester #identity: 0.00 block200765 GAGCCTTGCTCCCATGGAGAC #rat_gr509579_libT5S2 21 1 block200765 ttggcctttctgcagttcttacGAGCCTTGCTCCCATGGAGACtgcctgtgtgtgctgcagtctcttgggtgcatgctaggaggcaccatgtcatgagagtcca ******************************************************************************************************** block200765 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001490 ENSRNOG00000001128 RGD1566317_predicted block200765 .(((.(((((((((((((((...(((..(((.((((.(((((((((..((....)).))))))))))))).))).)))..)))).))..)).)).))))).))) 0.930 -42.80 # #block200765 chromosome:12:39678907:39679010:-1 Same_strand|Intronic_coding|ENSRNOT00000001490|ENSRNOG00000001128 ## ENSRNOG00000001128|protein_coding|RGD1566317_predicted| ========== block201608 [novel_randfoldOK] ========== #randfold block201608: 0.001 #forester #identity: 0.00 block201608 TGGGGGTGTTTGGGGGTGGG #rat_gr1045353_libT2S1 20 1 block201608 TGGGGGTGTTTGGGGGTGGG #rat_gr1045353_libT2S2 20 1 block201608 agattgaagaTGGGGGTGTTTGGGGGTGGGatgcacacatctctttccaggcagttatcttacaagctacatctgggaggggggggtgtgtgccacccctgatttacctcagtccctgtc ************************************************************************************************************************ block201608 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000001507 ENSRNOG00000001141 RGD1560213_predicted block201608 .(((....(((.((((((.((((((((((.((((((...((((((((((((.((((........))))...))))))))))))..)))))).))))))))))..)))))).)))...))) 1.000 -55.70 # #block201608 chromosome:12:41302207:41302326:-1 Opposite_strand|Intronic_coding|ENSRNOT00000001507|ENSRNOG00000001141 ## ENSRNOG00000001141|protein_coding|RGD1560213_predicted| ========== block202681 [novel_randfoldOK] ========== #randfold block202681: 0.005 randfold human233p12_block202681: 0.070 #forester human233p12_block202681: 0.30891 #identity: 69.84 block202681 TGCCAGCCCTCAGCTCCATCT #rat_gr964558_libT5S2 21 1 block202681 CCTGCTATCTGACCAAGTTGGGGTCAGGGGGTGGAGGGAACGGCACCTGGCCATGCATGGAAGCTGCCAGCCCTCAGCTCCATCTGCCTCAGGTAAGAAATCCAGG human233p12 CCACTGGGCTGACC----TGAGGCTCGTG----------------CATGGCCTTGCAC---CCCTGCCAGCCCCCAGCTCCATCAC-------------------- ** ****** ** ** * * * ***** **** ********** ********** block202681 -------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000001565 ENSRNOG00000001183 Tcf1 block202681 ((((...(((.(((....(((((.((((((((.(((((...((((.((..(((....))).)).))))..))))).)))))..))))))))))).)))....)))) 0.990 -45.20 # human233p12 ....(((((((... ...(((..((( ((......))))) ....)))......)))).))).... 0.950 -19.90 # #block202681 chromosome:12:42920522:42920627:-1 Opposite_strand|Intronic_coding|ENSRNOT00000001565|ENSRNOG00000001183 ## ENSRNOG00000001183|protein_coding|Tcf1|Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1). [Source:UniProtKB/Swiss-Prot;Acc:P15257] #human233p12 chromosome:4:2343483:2343628:-1 Same_strand|Boundary_non-coding|ENST00000342540|ENSG00000159733|protein_coding|Zinc finger FYVE domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9HCC9] ## Same_strand|Intronic_coding|ENST00000290974|ENSG00000159733|protein_coding|Zinc finger FYVE domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9HCC9] ========== block203322 [novel_randfoldOK] ========== #randfold block203322: 0.001 #forester #identity: 0.00 block203322 AGTCCCACCCTCCTCACACTCC #rat_gr197124_libT3S2 22 1 block203322 agcttgatttcattaagagggcttggggtggggacagtgcggggcgggactatgctgggccacacgcAGTCCCACCCTCCTCACACTCCaagcttgcctcttcttgacctcaagt ******************************************************************************************************************* block203322 .((((((..(((..((((((((((((((((((((.......(((.(((((..(((((.....)).)))))))).)))))))..))))))))))...))))))..)))..)))))) 0.990 -55.01 # #block203322 chromosome:12:43862832:43862946:-1 intergenic ========== block203506 [novel_randfoldOK] ========== #randfold block203506: 0.002 #forester #identity: 0.00 block203506 CCGCTGCCCGGCCAGCTTCCAG #rat_gr367668_libT1S1 22 2 block203506 cccctggggctgccggagcagcggggggccttggatcacactCCGCTGCCCGGCCAGCTTCCAGtctaggga ************************************************************************ block203506 ((((((((((((((((.(((((((((..............)))))))))))))).)))).))))....))). 1.000 -42.94 # #block203506 chromosome:12:44153850:44153921:-1 intergenic ========== block205126 [novel_mirtron_randfoldOK] ========== #randfold block205126: 0.001 #forester #identity: 0.00 block205126 TAGCCCCACTGCCTGTGTCTCA #rat_gr770306_libT5S1 22 1 block205126 ctggcagggtaggcacaggggtgggggtggggtgtttgtttctggccctTAGCCCCACTGCCTGTGTCTCAtcagccttatcagc ************************************************************************************* block205126 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>> #ENSRNOT00000056729 ENSRNOG00000037480 Ddx51 block205126 (((..(((((((((((((((((((((.(((((.(((.......)))))))).))))))).))))))))).....)))))..))). 1.000 -45.90 # #block205126 chromosome:12:46157181:46157265:-1 Same_strand|Intronic_coding|ENSRNOT00000056729|ENSRNOG00000037480 ## ENSRNOG00000037480|protein_coding|Ddx51|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 Gene [Source:MGI (curated);Acc:Ddx51-001] ========== block209444 [novel_randfoldOK] ========== #randfold block209444: 0.001 #forester #identity: 0.00 block209444 TAGCTCTTGATAAACACACAC #rat_gr771820_libT5S1 21 2 block209444 gtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagaatggagggatattacTAGCTCTTGATAAACACACACaggct ************************************************************************************************************* block209444 ((.(((((((((.(((..(((((..((.((.................................................)).))..))))).))).))))))))).)). 1.000 -23.09 # #block209444 chromosome:12:5633227:5633335:1 intergenic ========== block211868 [novel_mirtron_randfoldOK] ========== #randfold block211868: 0.008 #forester #identity: 0.00 block211868 CTAGCCTGGTACCCTTCCCCAG #rat_gr412882_libT1S1 22 1 block211868 tcagtgcttcttgagtgtcaggagtcttggaggaggggtgagggctgtgtctggggcgttttagagtaacccCTAGCCTGGTACCCTTCCCCAGctgataataggcggcctgg ***************************************************************************************************************** block211868 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000038143 ENSRNOG00000000999 RGD1309707_predicted block211868 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000031901 ENSRNOG00000000999 RGD1309707_predicted block211868 .(((.(((.((((..((((((.....((((.(((((((((.(((((......((((.(((.......))))))))))))..))))))))))))))))))).)))).)))))). 1.000 -48.10 # #block211868 chromosome:12:10037086:10037198:1 Same_strand|Intronic_non-coding|ENSRNOT00000038143|ENSRNOG00000000999 ## Same_strand|Intronic_coding|ENSRNOT00000031901|ENSRNOG00000000999 ## Same_strand|Boundary_non-coding|ENSRNOT00000038175|ENSRNOG00000000999 ## ENSRNOG00000000999|protein_coding|RGD1309707_predicted|similar to Smad ubiquitination regulatory factor 1 isoform 2 (LOC690516), mRNA [Source:RefSeq_dna;Acc:NM_001109598] ========== block212379 [novel_randfoldOK] ========== #randfold block212379: 0.002 #forester #identity: 0.00 block212379 ACACGCTCAGCAGGGCTTCCAG #rat_gr74853_libT4S2 22 2 block212379 ACACGCTCAGCAGGGCTTCCAGAC #rat_gr74854_libT3S2 24 2 block212379 ACACGCTCAGCAGGGCTTCCAG #rat_gr74853_libT2S2 22 1 block212379 ttcctgcccgtgatcgctctgcagtatggcagccctgtggtggggacgtgagagcagacgctggcctcACACGCTCAGCAGGGCTTCCAGACcccagggcagatccaaggaaaaggaa ********************************************************************************************************************** block212379 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001347 ENSRNOG00000001010 RGD1306873 block212379 .((((..((..((((((((((..((.(((.((((((((....(((..(((((.((........)))))))...))).)))))))).))).))..)))))).))))...))...)))). 1.000 -54.90 # #block212379 chromosome:12:10733766:10733883:1 Same_strand|Intronic_coding|ENSRNOT00000001347|ENSRNOG00000001010 ## ENSRNOG00000001010|protein_coding|RGD1306873| ========== block213497 [novel_randfoldOK] ========== #randfold block213497: 0.001 #forester #identity: 0.00 block213497 TACCCACATGACCCACACAC #rat_gr748704_libT3S1 20 1 block213497 tcacaTACCCACATGACCCACACACgcccacagatgggcggtagtgttagtgggttatggaggggttggga *********************************************************************** block213497 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000034863 ENSRNOG00000024482 LOC686219 block213497 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001478 ENSRNOG00000024482 LOC686219 block213497 ...((.((((.(((((((((((((((((((....)))))....))))..))))))))))...))))))... 1.000 -34.10 # #block213497 chromosome:12:12202870:12202940:1 Same_strand|Boundary_non-coding|ENSRNOT00000038203|ENSRNOG00000024482 ## Same_strand|Intronic_coding|ENSRNOT00000001478|ENSRNOG00000024482 ## ENSRNOG00000024482|protein_coding|LOC686219|zinc finger protein 469 [Source:RefSeq_peptide;Acc:NP_001100593] ========== block213808 [novel_randfoldOK] ========== #randfold block213808: 0.008 #forester #identity: 0.00 block213808 TCTCCGCCTAGTGCGTCGGTG #rat_gr900613_libT3S1 21 1 block213808 gggaacggagtccccgcgcatgcgcaccgacggatacataggcgcatgcgcagaggctcggtagcgcgggtgcctgTCTCCGCCTAGTGCGTCGGTGcgcagggccggtgactcttct ********************************************************************************************************************** block213808 .(((..((((((.(((.((.((((((((((((.((...((((((.....((((..(((((......)))))..))))...)))))))).))))))))))))..))))).))))))))) 0.950 -63.70 # #block213808 chromosome:12:12603721:12603838:1 intergenic ========== block214995 [novel_randfoldOK] ========== #randfold block214995: 0.002 #forester #identity: 0.00 block214995 GTTGCAGTGTTGGAGAGGCA #rat_gr661300_libT2S2 20 1 block214995 GTTGCAGTGTTGGAGAGGCA #rat_gr661300_libT3S2 20 1 block214995 gactattgtcctttttGTTGCAGTGTTGGAGAGGCAggaggtatttgtgcctcatctattactgcaaaaaaattaaataaatgtaacaataaacgtcc ************************************************************************************************** block214995 (((((((((....((((((((((((.((((((((((.(((...))).)))))).)))).)))))))..........)))))....))))))...))). 0.490 -29.00 # #block214995 chromosome:12:14356689:14356786:1 intergenic ========== block215095 [novel_rep_cloningOK_mirtron_randfoldOK] ========== #randfold block215095: 0.002 randfold mouse54p13_block215095: 0.001 #forester mouse54p13_block215095: 0.343016 #identity: 71.67 block215095 TGTCTCCATCTGCTTCCCAC #rat_gr1081109_libT4S2 20 3 block215095 TGTCTCCATCTGCTTCCC #rat_gr1081107_libT1S1 18 2 block215095 TGTCTCCATCTGCTTCCCA #rat_gr1081108_libT1S1 19 2 block215095 TGTCTCCATCTGCTTCCCACA #rat_gr1081110_libT1S2 21 2 block215095 TCTCCATCTGCTTCCCACAG #rat_gr897719_libT5S1 20 2 block215095 TGTCTCCATCTGCTTCCCA #rat_gr1081108_libT3S1 19 1 block215095 TGTCTCCATCTGCTTCCCAC #rat_gr1081109_libT1S2 20 1 block215095 TGTCTCCATCTGCTTCCCACA #rat_gr1081110_libT1S1 21 1 block215095 TGTCTCCATCTGCTTCCCACAG #rat_gr1081111_libT1S1 22 1 block215095 TGTCTCCATCTGCTTCCCACAG #rat_gr1081111_libT4S2 22 1 block215095 TGTCTCCATCTGCTTCCCACAG #rat_gr1081111_libT5S2 22 1 block215095 GTCTCCATCTGCTTCCCACA #rat_gr640721_libT1S1 20 1 block215095 TCTCCATCTGCTTCCCACAGGG #rat_gr897720_libT5S1 22 1 block215095 TCCCAGGGAGGCCTCTTGGTGCCGTGGGAGGCAGAGGGAGGAAGAACCACTAGGGCTTTACCAGGCTGTCTGTCTCCATCTGCTTCCCACAGGGCCCAGACTTCGTGCGAA mouse54p13 -----------------------------AGAGGAGGGAGGCAGAAGGGACAGAGCATCAGCA-----TCTGTCTCCATCTGCTTCCT----------GGCTGT------- * ******** **** ** ** * * ** ******************* * ** block215095 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000051565 ENSRNOG00000001241 Iqce_predicted block215095 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000001667 ENSRNOG00000001241 Iqce_predicted block215095 ((.((.((((.....((((.(((((((((((((((.((((..(((....((.((......))))....)))..)))).))))))))))))..))))))).)))).)).)). 0.990 -53.00 # mouse54p13 ..((..((((((((((.((((((((((....)). )))))).)).)))))))))) ..)).. 1.000 -33.00 # #block215095 chromosome:12:14426250:14426360:1 Same_strand|Boundary_coding|ENSRNOT00000001667|ENSRNOG00000001241 ## ENSRNOG00000001241|protein_coding|Iqce_predicted| #mouse54p13 chromosome:1:39461167:39461317:-1 Same_strand|Intronic_coding|ENSMUST00000054462|ENSMUSG00000003134|protein_coding|TBC1 domain family, member 8 Gene [Source:MGI Symbol;Acc:MGI:1927225] ## {Repeats: MTE2b 1 class=LTR/MaLR,dust 0 class=dust,(TCTCCC)n -1 class=Simple_repeat,trf 0 class=trf,trf 0 class=trf} ========== block215202 [novel_cloningOK_5varHIGH_randfoldOK] ========== #randfold block215202: 0.002 #forester #identity: 0.00 block215202 AGGCAGCAAGCTCCCCTA #rat_gr177727_libT3S1 18 1 block215202 AGCAAGCTCCCCTACAGCC #rat_gr149590_libT4S2 19 1 block215202 CAAGCTCCCCTACAGCCG #rat_gr269624_libT5S2 18 1 block215202 CAAGCTCCCCTACAGCCGCC #rat_gr269625_libT3S1 20 1 block215202 CAAGCTCCCCTACAGCCGCC #rat_gr269625_libT5S1 20 1 block215202 CAAGCTCCCCTACAGCCGCCA #rat_gr269626_libT5S1 21 1 block215202 CAAGCTCCCCTACAGCCGCCAG #rat_gr269627_libT3S1 22 1 block215202 CAAGCTCCCCTACAGCCGCCAG #rat_gr269627_libT3S2 22 1 block215202 AAGCTCCCCTACAGCCGCC #rat_gr48160_libT1S1 19 1 block215202 AAGCTCCCCTACAGCCGCCA #rat_gr48161_libT1S1 20 1 block215202 AAGCTCCCCTACAGCCGCCA #rat_gr48161_libT5S1 20 1 block215202 AAGCTCCCCTACAGCCGCCAG #rat_gr48162_libT1S1 21 1 block215202 AAGCTCCCCTACAGCCGCCAG #rat_gr48162_libT3S1 21 1 block215202 AAGCTCCCCTACAGCCGCCAG #rat_gr48162_libT4S2 21 1 block215202 AAGCTCCCCTACAGCCGCCAGCC #rat_gr48163_libT3S2 23 1 block215202 AAGCTCCCCTACAGCCGCCAGCC #rat_gr48163_libT5S2 23 1 block215202 accctggcattgcagagtgcaaccctagggcgggtggggggtgctcgctgcagAGGCAGCAAGCTCCCCTACAGCCGCCAGCCttcactttgcttttgcgcacaaaagggtc **************************************************************************************************************** block215202 -------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000001682 ENSRNOG00000001250 Lfng block215202 (((((.(((..((((((((.((..((..(((((.(((((((.(((.(((((....))))).))).))))).)).)))))))..))))))))))...))).......))))). 0.980 -56.70 # #block215202 chromosome:12:14502315:14502426:1 Opposite_strand|Intronic_coding|ENSRNOT00000001682|ENSRNOG00000001250 ## ENSRNOG00000001250|protein_coding|Lfng|Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase). [Source:UniProtKB/Swiss-Prot;Acc:Q924T4] ========== block219257 [novel_randfoldOK] ========== #randfold block219257: 0.001 #forester #identity: 0.00 block219257 GCCGTGTCCCTGAGCCTGATG #rat_gr555117_libT1S2 21 1 block219257 gagagccgaactacgactcccatcagcctctgcgacatcctgcctcttgtgggaatctgcGCCGTGTCCCTGAGCCTGATGggagttgtagtttccagggtttcggcaactca ***************************************************************************************************************** block219257 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001924 ENSRNOG00000001420 FIS1_RAT block219257 (((.((((((((((((((((((((((.(((...(((((..((((((....))).....)))..)))))...))).)))))))))))))))))..........)))))..))). 0.970 -52.10 # #block219257 chromosome:12:20817904:20818016:1 Same_strand|Intronic_coding|ENSRNOT00000001924|ENSRNOG00000001420 ## ENSRNOG00000001420|protein_coding|FIS1_RAT|Mitochondrial fission 1 protein (Fis1 homolog) (rFis1) (Tetratricopeptide repeat protein 11) (TPR repeat protein 11). [Source:UniProtKB/Swiss-Prot;Acc:P84817] ========== block219628 [novel_randfoldOK] ========== #randfold block219628: 0.001 #forester #identity: 0.00 block219628 CCCGGAGTCTTCAGGGCTGGGG #rat_gr357212_libT3S1 22 1 block219628 ggcctgtgtacctgctgtgagcctggagctccatcctgggcccatctgctgtgggctgctccaggcagctcctcatggcagattctCCCGGAGTCTTCAGGGCTGGGGcacaggtt ******************************************************************************************************************** block219628 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001932 ENSRNOG00000001424 LOC681658 block219628 .(((((((..((.((......(((((((((((.....(((...((((((((((((((((.....))))))...))))))))))...))))))).))))))))).))..))))))). 0.480 -59.80 # #block219628 chromosome:12:21303455:21303570:1 Same_strand|Boundary_non-coding|ENSRNOT00000059486|ENSRNOG00000001424 ## Same_strand|Intronic_coding|ENSRNOT00000001932|ENSRNOG00000001424 ## ENSRNOG00000001424|protein_coding|LOC681658|Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (CDP2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P53565] ========== block219947 [novel_randfoldOK] ========== #randfold block219947: 0.001 #forester #identity: 0.00 block219947 AATGGCCGCTGGGCTCCCATG #rat_gr63468_libT1S2 21 1 block219947 gtggtctcttactctgtatataAATGGCCGCTGGGCTCCCATGagcgccatttccatttcttacaacagcttttctctggagtctggatttggtgcccatgggatcctggagggccccac ************************************************************************************************************************ block219947 ((((.....................((((.(((((.(((((((.((((((..((((...(((....(((.......))))))..))))..)))))).))))))).)))))..)))))))) 0.420 -46.89 # #block219947 chromosome:12:21634184:21634303:1 intergenic ========== block220608 [novel_randfoldOK] ========== #randfold block220608: 0.005 #forester #identity: 0.00 block220608 GCTGGCTCCTTGTTTTCTAGA #rat_gr574104_libT4S2 21 1 block220608 acagtctgagtgtGCTGGCTCCTTGTTTTCTAGAtttctgcccttctacatatcctctgccgggagggcatggacctggcccattggaaacctagggccgggcactcagctccactg ********************************************************************************************************************* block220608 .((((((((((((.(((((.(((.(((((((((.((..(((((((((.((.......))..)))))))))..)).)))).......)))))..))))))))))))))))....)))) 0.480 -47.01 # #block220608 chromosome:12:22229677:22229793:1 intergenic ========== block227165 [novel_randfoldOK] ========== #randfold block227165: 0.001 #forester #identity: 0.00 block227165 GGGGCGGTGTGAAGAGGAGTGT #rat_gr611324_libT1S1 22 1 block227165 ctagcgtggctccccccaggctgggggggGGGGCGGTGTGAAGAGGAGTGTgggcagtttcttgttctctcctctttcttgctgccctcccccctgcccggccaggaacctcgtctgg ********************************************************************************************************************** block227165 ((((((.((.(((..((.(((.((((((((((((((((.(((((((((...((((((....)))))).)))))))))..))))))))))))))))))).))...))).)).)).)))) 1.000 -72.60 # #block227165 chromosome:12:32598261:32598378:1 intergenic ## {Repeats: dust 32598283 32598287 0 class=dust} ========== block227196 [novel_randfoldOK] ========== #randfold block227196: 0.005 randfold mouseZ14p13_block227196: 0.002 #forester mouseZ14p13_block227196: 0.976531 #identity: 98.51 block227196 TAGGGGTTGGGGGTTACCAG #rat_gr780648_libT1S2 20 2 block227196 TTCAGAATGGTCAGCCTCACCTCCTAGGGGTTGGGGGTTACCAGGGGAAACAGAATTCCCTAAAGGTGGAGCCAGGACCTCTGGAGTCACGTGGCGGTAGAGACTCAGCTCTGAGA mouseZ14p13 -----------------------CTAGGGGTTGGGGGTCACCAGGGGAAACAGAATTCCCTAAAGGTGGAGCCAGGACCTCTGGAGTCAC-------------------------- *************** *************************************************** block227196 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001334 ENSRNOG00000001004 NM_001108334.1 block227196 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000031011 ENSRNOG00000001004 NM_001108334.1 block227196 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003126 ENSRNOG00000001004 NM_001108334.1 block227196 ((((((.(((((.(((((((((((.(((((((..((.(((((.((((((......))))))...)))))..))..)))))))))))....)))).)))...))).))..)))))). 0.970 -47.30 # mouseZ14p13 (((((((((..((.(((((.((((((......))))))...)))))..))..)))))))))...... 1.000 -30.60 # #block227196 chromosome:12:32647847:32647962:1 Same_strand|Intronic_coding|ENSRNOT00000003126|ENSRNOG00000001004 ## ENSRNOG00000001004|protein_coding|NM_001108334.1|nuclear receptor co-repressor 2 (predicted) (Ncor2_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001108334] #mouseZ14p13 chromosome:5:125574965:125575031:-1 Same_strand|Intronic_coding|ENSMUST00000111402|ENSMUSG00000029478|protein_coding|nuclear receptor co-repressor 2 Gene [Source:MGI (curated);Acc:Ncor2-002] ========== block227882 [novel_randfoldOK] ========== #randfold block227882: 0.001 #forester #identity: 0.00 block227882 AACGTCACAGGAAGCTCTGAGTC #rat_gr36893_libT3S1 23 1 block227882 ACGTCACAGGAAGCTCTGAGTCA #rat_gr113722_libT1S2 23 1 block227882 ggtgaagaAACGTCACAGGAAGCTCTGAGTCAtgtgtccagttgggcagcactgacctgggtctcctgtgacccctcata ******************************************************************************** block227882 .((((......(((((((((..(((...(((((((((((....))))).)).))))..)))..)))))))))...)))). 1.000 -34.00 # #block227882 chromosome:12:33612681:33612760:1 intergenic ========== block228766 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block228766: 0.008 #forester #identity: 0.00 block228766 ACAGCTTCTCCCTTCTCTTCCCC #rat_gr79693_libT1S1 23 1 block228766 gtggggtaggtgaggaggcgggaggtggattcactgtgcctcgagatgACAGCTTCTCCCTTCTCTTCCCCaca ************************************************************************** block228766 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> #ENSRNOT00000001773 ENSRNOG00000001309 Camkk2 block228766 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> #ENSRNOT00000001774 ENSRNOG00000001309 Camkk2 block228766 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> #ENSRNOT00000041200 ENSRNOG00000001309 Camkk2 block228766 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> #ENSRNOT00000001778 ENSRNOG00000001309 Camkk2 block228766 ((((((.....(((((((.(((((((....(((((........)).)))..))))))))))))))..)))))). 0.940 -33.80 # #block228766 chromosome:12:34923482:34923555:1 Same_strand|Intronic_coding|ENSRNOT00000001774|ENSRNOG00000001309 ## ENSRNOG00000001309|protein_coding|Camkk2|Calcium/calmodulin-dependent protein kinase kinase 2 (EC 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta). [Source:UniProtKB/Swiss-Prot;Acc:O88831] ========== block228842 [novel_randfoldOK] ========== #randfold block228842: 0.003 #forester #identity: 0.00 block228842 GGCAGGGAGGTGGGGCACTGGGA #rat_gr593901_libT4S1 23 2 block228842 ccagtgacggtgttcactaagttggGGCAGGGAGGTGGGGCACTGGGAtgcctggcactacggcaagcatccaggtgagacccatgaccctggacctaggatggagctccgatgatgg ********************************************************************************************************************** block228842 -------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000001746 ENSRNOG00000001296 P2rx7 block228842 (((....(((.((((......(((((.(((((..(((((.((((.((((((...((......))..)))))).))))...)))))..)))))..)))))....)))).)))....))) 0.990 -52.80 # #block228842 chromosome:12:35088270:35088387:1 Opposite_strand|Intronic_coding|ENSRNOT00000001746|ENSRNOG00000001296 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000057575|ENSRNOG00000001296 ## ENSRNOG00000001296|protein_coding|P2rx7|P2X purinoceptor 7 (ATP receptor) (P2X7) (Purinergic receptor) (P2Z receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q64663] ========== block230181 [novel_randfoldOK] ========== #randfold block230181: 0.004 randfold human214p13_block230181: 0.003 #forester human214p13_block230181: 0.31623 #identity: 64.79 block230181 CCCTTCCTGGTCCCCATCCCG #rat_gr364222_libT5S2 21 1 block230181 CTTTCTGGCAGAGGGAGAAGCCTTAAAACCCTTCCTGGTCCCCATCCCGAAACCATGTCTTCATTTGCTCTGGATGAGGGTT-------CAGGAGAGGCTCAAAATAACTCACCTTTGCGGAGGG human214p13 --------CAG------------------CCTTCCTGGTCCCCATCCT---------CCTGGGACTTCCTTGGAGGAGATTCGCCCAGGCAGGTGGGAGTTGG--------GCCCTGGCTG---- *** ****************** ** * * **** *** * **** * * * ** * ** * block230181 ((((((.((((((((((.((((((........(((((..((((((((.((....(((....)))....)).))))).))).. )))))))))))........))).))))))))))))) 1.000 -45.30 # human214p13 ((( ((..(((((..((((.((( ((((((..((((.....)))).....)))))).)))))))..)))) )....))))) 0.989 -39.10 # #block230181 chromosome:12:37144007:37144124:1 intergenic #human214p13 chromosome:5:175887466:175887543:1 Opposite_strand|Exonic_non-coding|ENST00000274811|ENSG00000146083|protein_coding|RING finger protein 44 [Source:UniProtKB/Swiss-Prot;Acc:Q7L0R7] ========== block230765 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block230765: 0.002 #forester #identity: 0.00 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT1S1 18 6 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT4S1 18 6 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT5S1 18 5 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT2S2 18 3 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT3S1 18 3 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT5S2 18 2 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT2S1 18 1 block230765 GCAGAGGCTATTGTTCCC #rat_gr532602_libT3S2 18 1 block230765 GCAGAGGCTATTGTTCCCA #rat_gr532603_libT1S2 19 1 block230765 GCAGAGGCTATTGTTCCCA #rat_gr532603_libT5S1 19 1 block230765 gcagaattgccttggtgaattgaaaacggctttcactgtcttcattccaggcaGCAGAGGCTATTGTTCCCaaggtctctgct *********************************************************************************** block230765 (((((...(((((((.((((....((..(((((..((((((.......))))))..)))))..))))))))))))).))))). 1.000 -33.20 # #block230765 chromosome:12:38314935:38315017:1 intergenic ========== block232223 [novel_randfoldOK] ========== #randfold block232223: 0.010 #forester #identity: 0.00 block232223 CTGTGCCAATGTCCTGTCACTG #rat_gr455557_libT1S2 22 1 block232223 tcacctgaCTGTGCCAATGTCCTGTCACTGcgagcctttctcctcctgggtgtgggagtcttcagttaaacacaggcaagatgtggcagggtcgtggtga **************************************************************************************************** block232223 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000001507 ENSRNOG00000001141 RGD1560213_predicted block232223 ((((((((((.(((((.((.(((((.((((.(((.(((((.((.....))...))))).))))))).....))))))).....))))).))))).))))) 0.990 -39.60 # #block232223 chromosome:12:41264442:41264541:1 Same_strand|Intronic_coding|ENSRNOT00000001507|ENSRNOG00000001141 ## ENSRNOG00000001141|protein_coding|RGD1560213_predicted| ========== block236387 [novel_mirtron_randfoldOK] ========== #randfold block236387: 0.004 #forester #identity: 0.00 block236387 ATGGTCTCGCCCACGCCCCT #rat_gr235299_libT1S1 20 1 block236387 cagggcggggtgggcgtggcctgtgtcggggtgggcgaggcgcttcggggaggccgaaggagccATGGTCTCGCCCACGCCCCTagggaagaccacgctcatccgggctctg **************************************************************************************************************** block236387 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000056632 ENSRNOG00000037426 Gtpbp6_predicted block236387 ((((((.(((((((((((((((.....(((((((((((((((((((.((....))...)))))....))))))))))).)))...)))....))))))))))))..)))))) 0.970 -66.70 # #block236387 chromosome:12:46724879:46724990:1 Same_strand|Intronic_coding|ENSRNOT00000056632|ENSRNOG00000037426 ## ENSRNOG00000037426|protein_coding|Gtpbp6_predicted| ## {SimpF: oe = 0.82 1 CpG} ========== block249415 [novel_randfoldOK] ========== #randfold block249415: 0.001 #forester #identity: 0.00 block249415 TAGTAGTAGTAGTAAATGTG #rat_gr784631_libT1S2 20 1 block249415 tcatgtactactactactactactactactactactactactactactactactactactactattattattattagtagTAGTAGTAGTAGTAAATGTGtgcatga *********************************************************************************************************** block249415 --------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000050329 ENSRNOG00000029556 RGD1559812_predicted block249415 ((((((((.((...((((((((((((((((((((.((.((.((.((.((.((....)).)).)).)).)).)).))))))))))))))))))))...)))))))))) 0.600 -38.50 # #block249415 chromosome:13:29169897:29170003:-1 Opposite_strand|Intronic_non-coding|ENSRNOT00000050329|ENSRNOG00000029556 ## ENSRNOG00000029556|protein_coding|RGD1559812_predicted|similar to contactin associated protein-like 5 isoform 1 (predicted) (RGD1559812_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001047865] ## {Repeats: trf 1 15 0 class=trf,dust 29169910 29169924 0 class=dust} ========== block253339 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block253339: 0.001 #forester #identity: 0.00 block253339 TACGTGAGATAGATTTCAGGTAC #rat_gr753350_libT1S2 23 3 block253339 ACGTGAGATAGATTTCAG #rat_gr113912_libT1S2 18 2 block253339 CGTGAGATAGATTTCAGGTAC #rat_gr404804_libT1S2 21 1 block253339 TACGTGAGATAGATTTCAGGTAC #rat_gr753350_libT1S1 23 1 block253339 CGTGAGATAGATTTCAGGT #rat_gr404803_libT1S2 19 1 block253339 TACGTGAGATAGATTTCAG #rat_gr753349_libT1S1 19 1 block253339 TACGTGAGATAGATTTCAG #rat_gr753349_libT1S2 19 1 block253339 TACGTGAGATAGATTTCA #rat_gr753348_libT1S1 18 1 block253339 gagcgtgtgagagccatggtgagcaagagcacctgaaatccacctaatggagtttaacactaaaaacTACGTGAGATAGATTTCAGGTACtcttgcccaccatattcttagtgct ******************************************************************************************************************* block253339 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003527 ENSRNOG00000002595 Dpp10 block253339 .(((...((((((..((((((.(((((((.((((((((((...((.(((.(((((........))))).))).))...)))))))))).))))))).)))))).))))))..))) 0.970 -47.50 # #block253339 chromosome:13:35717505:35717619:-1 Same_strand|Intronic_coding|ENSRNOT00000003527|ENSRNOG00000002595 ## ENSRNOG00000002595|protein_coding|Dpp10|Inactive dipeptidyl peptidase 10 (Dipeptidyl peptidase X) (Kv4 potassium channel auxiliary subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q6Q629] ========== block253476 [novel_randfoldOK] ========== #randfold block253476: 0.008 #forester #identity: 0.00 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT1S1 20 1 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT1S2 20 1 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT2S1 20 1 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT2S2 20 1 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT3S1 20 1 block253476 TGGCTCATTTCAACAGGCCA #rat_gr1016796_libT4S1 20 1 block253476 TGGCTCATTTCAACAGGCC #rat_gr1016795_libT4S2 19 1 block253476 TGGCTCATTTCAACAGGC #rat_gr1016794_libT1S1 18 1 block253476 gcgtctacgttccagttgatgtgatgtgtgtttatgaatgcttatgaaggatgcttatcaagttttagcatcctagaagTGGCTCATTTCAACAGGCCAtcagctgaagatgaagca ********************************************************************************************************************* block253476 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003527 ENSRNOG00000002595 Dpp10 block253476 ((.((....((.(((((((((....((.((((.((((.(((((....((((((((...........))))))))..)))))..))))...)))).))))))))))).))..)).)). 0.980 -36.20 # #block253476 chromosome:13:36105881:36105997:-1 Same_strand|Intronic_coding|ENSRNOT00000003527|ENSRNOG00000002595 ## ENSRNOG00000002595|protein_coding|Dpp10|Inactive dipeptidyl peptidase 10 (Dipeptidyl peptidase X) (Kv4 potassium channel auxiliary subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q6Q629] ========== block254351 [novel_randfoldOK] ========== #randfold block254351: 0.001 #forester #identity: 0.00 block254351 AGAGTGACTCAGCAGGACCTG #rat_gr145905_libT1S2 21 1 block254351 cagggcctggagagtgactcagcagggtctggagagtgactcagcagggcctggagagtgactcagcagggtctggAGAGTGACTCAGCAGGACCTGgagaatgactcagcagggcctgg ************************************************************************************************************************ block254351 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000038020 ENSRNOG00000021553 RGD1564507_predicted block254351 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000045003 ENSRNOG00000021553 RGD1564507_predicted block254351 ((((.((((..((((...((..((((..(((..((((.((((..((((.((((..(((...)))..)))).))))..)))).))))..)))..))))..))...))))..)))).)))). 1.000 -59.10 # #block254351 chromosome:13:38625892:38626011:-1 Same_strand|Intronic_coding|ENSRNOT00000038020|ENSRNOG00000021553 ## ENSRNOG00000021553|protein_coding|RGD1564507_predicted| ## {Repeats: trf 105 126 0 class=trf} ========== block255072 [novel_randfoldOK] ========== #randfold block255072: 0.005 #forester #identity: 0.00 block255072 CCAGTACAACAGCAGCAGTGGAGG #rat_gr334448_libT2S2 24 1 block255072 ctctggacagcagagCCAGTACAACAGCAGCAGTGGAGGggtggagggggtggtggaggcgactgtggccaagatcagtcctctatgagtgctggccgtggtggctatgggggagg ******************************************************************************************************************** block255072 ((((...((....(((((.(((..(((((...((((((((.(((....(((..(((......)))..)))....))).))))))))...)))))...))).))))).))..)))). 1.000 -44.80 # #block255072 chromosome:13:40423186:40423301:-1 intergenic ========== block258124 [novel_randfoldOK] ========== #randfold block258124: 0.007 #forester #identity: 0.00 block258124 TGGTGCCTCATTCCCTTCCCCT #rat_gr1066493_libT1S2 22 1 block258124 aggagaaagggcttagaaggagtagaggcttcttgccttccagtccctgcTGGTGCCTCATTCCCTTCCCCTtctattttct ********************************************************************************** block258124 (((((((((((....((((((((.(((((..........(((((....))))).)))))))))).))))))))...)))))) 0.970 -27.10 # #block258124 chromosome:13:46745400:46745481:-1 intergenic ========== block262603 [novel_randfoldOK] ========== #randfold block262603: 0.006 #forester #identity: 0.00 block262603 TCCCTGTTTTTTTTTTTTAG #rat_gr863007_libT5S1 20 1 block262603 taccgttacaaataagatatttaaaaaagttgaatcaggatacagaagtctgctggatttggactagtctTCCCTGTTTTTTTTTTTTAGatgtgcttacttttatggtgt *************************************************************************************************************** block262603 ((((((...((.(((((((((((((((((..(((.((((.....((((...(((((.......))))))))))))))))..))))))))))))).)))).))..)))))). 0.760 -28.20 # #block262603 chromosome:13:57991964:57992074:-1 intergenic ## {Repeats: dust 57991987 57991998 0 class=dust} ========== block268461 [novel_randfoldOK] ========== #randfold block268461: 0.005 randfold mouseZ11p14_block268461: 0.336 #forester mouseZ11p14_block268461: 0.819811 #identity: 95.71 block268461 GAGCGCGAGCC---GGAGCCCGAGC #rat_gr509817_libT2S2 22 1 block268461 TGCCGGGCTTGTGGGTTTCTCAGAGGAGCGCGAGCC---GGAGCCCGAGCAGCGGCCGGAGAGGCGGCCTGAGAGTTAGCGGGCCGGTCTGCGCGTTCCGCAGGAGCAAGCCCACGCCAGGCG mouseZ11p14 -------------------------GAGCGCGAGCCGGAGGAGCCCAAGCAGCGGCCGGAGCGGCGGCCTGAGAGTTAGCGGGCCGGCCTGCGCGTTC------------------------- *********** ******* ************** ************************* ********** block268461 .(((.(((..(((((((((((...(((((((((((( (..(((((...((((((((......))))).....)))..)))))))).)).))))))))....))).))))))))))).))). 0.960 -67.60 # mouseZ11p14 (((((((.((((.....((((..((((((((((......))))).....))).))))))))))...))))))) 0.356 -33.60 # #block268461 chromosome:13:72672761:72672880:-1 intergenic #mouseZ11p14 chromosome:1:159342526:159342685:-1 Opposite_strand|Exonic_non-coding|ENSMUST00000061537|ENSMUSG00000049881|protein_coding|RIKEN cDNA 2810025M15 gene Gene [Source:MGI Symbol;Acc:MGI:1917203] ## {SimpF: oe = 0.90 -1 CpG, -1 Eponine} ========== block268769 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block268769: 0.003 randfold mouseZ13p14_block268769: 0.022 #forester mouseZ13p14_block268769: 0.367717 #identity: 91.03 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT4S2 18 6 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT3S1 18 3 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT3S2 18 3 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT5S2 18 3 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT4S1 18 2 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT1S1 18 1 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT1S2 18 1 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT2S2 18 1 block268769 TGAGATGGGATGAGTCCT #rat_gr942639_libT5S1 18 1 block268769 CTCAGAGAAGAGGTGAGATGGGATGAGTCCTCCCCAAAGTGTCCAGGCAGACTGAAATGGAGGCTA-TTTTAAGGATTCATTCCCATATTTAGTAACTCACAGCATCTGA mouseZ13p14 -------------TGAGATGGGATGATCCCCCCCCCAAATGTCCAGGCAGCCTGGAATGGAGGCTATTTTTAAGGATTCATTCCCATATTTA------------------ ************* ** **** ** *********** *** *********** ************************* block268769 .(((((......(((((((((((((((((((......(((.((((..((...))...)))).))). .....))))))))).))))).........)))))....))))) 0.940 -37.70 # mouseZ13p14 ....((((((((((((..((.(((....((((((...)))))).))).))..........)))).))).)))))..... 0.646 -24.20 # #block268769 chromosome:13:73612831:73612939:-1 intergenic #mouseZ13p14 chromosome:1:160248745:160248893:-1 Same_strand|Intronic_non-coding|ENSMUST00000004133|ENSMUSG00000004031|protein_coding|RIKEN cDNA 6430517E21 gene Gene [Source:MGI Symbol;Acc:MGI:2443333] ## {Repeats: dust 0 class=dust} ========== block270016 [novel_randfoldOK] ========== #randfold block270016: 0.002 #forester #identity: 0.00 block270016 CTGCGGGAGCCGCATCCTGCCTGC #rat_gr444263_libT2S2 24 1 block270016 ggaaaggaaatagCTGCGGGAGCCGCATCCTGCCTGCgctatcggctcctgaggtggaggcagagagggtggagaaggcagagaagggtgccgcagagaaaaaagtgtc ************************************************************************************************************* block270016 .............((((((..(((...((((((((.((((.((.(((((......))).))...)).))))....)))))).))..))).))))))............. 0.980 -38.00 # #block270016 chromosome:13:76700525:76700633:-1 intergenic ========== block271332 [novel_randfoldOK] ========== #randfold block271332: 0.004 #forester #identity: 0.00 block271332 CCTCTAGCTGAAGTGATGGGGA #rat_gr375727_libT2S2 22 1 block271332 agcactggCCTCTAGCTGAAGTGATGGGGAtttggggactgccctgggcggtgccctacccacattgtcactcatgctctggagaatgtgct ******************************************************************************************** block271332 (((((....(((((((((.((((((.(((....(((.((((((...)))))).)))..))).....)))))))).)))..))))...))))) 1.000 -39.80 # #block271332 chromosome:13:79823449:79823540:-1 intergenic ========== block272096 [novel_randfoldOK] ========== #randfold block272096: 0.004 #forester #identity: 0.00 block272096 TCCAGGTCTGGCATCCCTCT #rat_gr833340_libT5S2 20 1 block272096 ggagagggaggaggaggagaaagaagactgcaggatccctggtgggaagtactgatgaccactggacagtactttcatacTCCAGGTCTGGCATCCCTCTgcctctttcctg **************************************************************************************************************** block272096 ((.((((((((.(((((.((........(((.(((..(((((..((((((((((............)))))))))).....)))))))).)))))))))).)))))))))). 0.900 -44.80 # #block272096 chromosome:13:81366996:81367107:-1 intergenic ========== block274080 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block274080: 0.001 #forester #identity: 0.00 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT3S1 18 6 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT3S2 18 3 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT2S2 18 2 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT1S1 18 1 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT4S2 18 1 block274080 TTTTCCAAGTCACTGGCA #rat_gr1181059_libT5S2 18 1 block274080 ggaaggttggagatgctagctggtggagtctttgaggggcattgcccaactttggttctgctcccaTTTTCCAAGTCACTGGCAtcgtgacaccttcc ************************************************************************************************** block274080 ((((((.((..((((((((.((.(((((....((.((((((..(((.......)))..))))))))..)))))...))))))))))....)))))))) 1.000 -42.60 # #block274080 chromosome:13:86071332:86071429:-1 intergenic ========== block274081 [novel_randfoldOK] ========== #randfold block274081: 0.006 #forester #identity: 0.00 block274081 AGCCTACCTGGCGTGGCGTGTC #rat_gr159827_libT5S2 22 1 block274081 AGCCTACCTGGCGTGGCGTG #rat_gr159826_libT5S2 20 1 block274081 tgcctggAGCCTACCTGGCGTGGCGTGTCggctcgcttgtcctctccccagcctgcaccatggcggggtccggctggacttggggcgccgagccgccgcgttttctggaggccttcgggc ************************************************************************************************************************ block274081 .(((((((((((.((.(((((((((..(((((..((((((((.((((((.(((........)))))))...))..))))...)))))))))..)))))))))....)))))).))))))) 0.980 -64.40 # #block274081 chromosome:13:86073779:86073898:-1 intergenic ========== block275562 [novel_cloningOK_mirtron_randfoldOK_nonpairedHIGH] ========== #randfold block275562: 0.003 #forester #identity: 0.00 block275562 TCTGCCTTCTCCTTCCTATCA #rat_gr906553_libT1S2 21 4 block275562 TCTGCCTTCTCCTTCCTATC #rat_gr906552_libT1S1 20 3 block275562 CTGCCTTCTCCTTCCTATCAG #rat_gr443903_libT1S1 21 2 block275562 TCTGCCTTCTCCTTCCTATCAG #rat_gr906554_libT1S1 22 2 block275562 CTGCCTTCTCCTTCCTATCA #rat_gr443902_libT1S1 20 2 block275562 TCTGCCTTCTCCTTCCTATCA #rat_gr906553_libT1S1 21 2 block275562 CTGCCTTCTCCTTCCTATCAG #rat_gr443903_libT1S2 21 1 block275562 TCTGCCTTCTCCTTCCTATCAG #rat_gr906554_libT1S2 22 1 block275562 TCTGCCTTCTCCTTCCTATC #rat_gr906552_libT1S2 20 1 block275562 TCTGCCTTCTCCTTCCTATC #rat_gr906552_libT4S2 20 1 block275562 TCTGCCTTCTCCTTCCTA #rat_gr906551_libT1S1 18 1 block275562 TCTGCCTTCTCCTTCCTA #rat_gr906551_libT1S2 18 1 block275562 ccctagtagtttatcttgacataatttggagagaggaatggggagggagaaaccaacatagctttctcttTCTGCCTTCTCCTTCCTATCAGgtgatcatggtgactgggg *************************************************************************************************************** block275562 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000058143 ENSRNOG00000007290 Atp1a2 block275562 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000009964 ENSRNOG00000007290 Atp1a2 block275562 (((((((....((((.((((((....(((..((..(((.(((((((((((((..........))))))))))).)))))..))..)))....))).))).))))))))))) 0.990 -37.20 # #block275562 chromosome:13:88266897:88267007:-1 Same_strand|Intronic_coding|ENSRNOT00000009964|ENSRNOG00000007290 ## ENSRNOG00000007290|protein_coding|Atp1a2|Sodium/potassium-transporting ATPase subunit alpha-2 precursor (EC 3.6.3.9) (Sodium pump subunit alpha-2) (Na(+)/K(+) ATPase alpha-2 subunit) (Na(+)/K(+) ATPase alpha(+) subunit). [Source:UniProtKB/Swiss-Prot;Acc:P06686] ========== block276796 [novel_randfoldOK] ========== #randfold block276796: 0.001 #forester #identity: 0.00 block276796 AGTCTGGAGGTGGCAGGTGA #rat_gr198452_libT3S1 20 1 block276796 tgaagAGTCTGGAGGTGGCAGGTGAggttggggcagctagaggaggtgtgtgtgggcagcactgggtgagctagcaagtgtccgggggcacatgagccacctgcagcctgttcat ******************************************************************************************************************* block276796 ((((.((.(((.(((((((..(((...((.((((((((((....(((((.((....))))))).......)))))...))))).))..)))....))))))).))).)).)))). 0.570 -47.60 # #block276796 chromosome:13:91671949:91672063:-1 intergenic ========== block277601 [novel_randfoldOK] ========== #randfold block277601: 0.005 #forester #identity: 0.00 block277601 TGACAGCACTCGGTCACTAA #rat_gr932314_libT2S2 20 1 block277601 acattactagcaacgcatgttagtatttggtgctgtcgactgatgacatattacagtgttgtaaacggTGACAGCACTCGGTCACTAAtgttgcaatcttggcagtgtg ************************************************************************************************************* block277601 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000005961 ENSRNOG00000004481 NP_001099445.1 block277601 (((((.((((....((((((((((((..(((((((((.(((((((((((......)))))))...)))))))))))))..)).)))))))).))....)))).))))). 1.000 -37.10 # #block277601 chromosome:13:93691486:93691594:-1 Same_strand|Intronic_coding|ENSRNOT00000005961|ENSRNOG00000004481 ## ENSRNOG00000004481|protein_coding|NP_001099445.1|adenylosuccinate synthetase, non muscle [Source:RefSeq_peptide;Acc:NP_001099445] ========== block278741 [novel_randfoldOK] ========== #randfold block278741: 0.001 #forester #identity: 0.00 block278741 TAGCCAGACCATAGGAGAACAG #rat_gr769891_libT1S1 22 1 block278741 actgactgggtcgttctagatatgtcTAGCCAGACCATAGGAGAACAGtcggcgtttgtctggcctcctagggtctgggaatatctgatgcgacttttatagt ******************************************************************************************************* block278741 ----------------------------------------------------------------------------------------------------------------- #ENSRNOT00000004032 ENSRNOG00000002969 Itpkb block278741 ((((...(((((((..(((((((.((...(((((((.((((((..(((.((.....)).)))..)))))).))))))))))))))))..)))))))...)))) 1.000 -44.70 # #block278741 chromosome:13:96073441:96073543:-1 Opposite_strand|Intronic_coding|ENSRNOT00000004032|ENSRNOG00000002969 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000044891|ENSRNOG00000002969 ## ENSRNOG00000002969|protein_coding|Itpkb|Inositol-trisphosphate 3-kinase B (EC 2.7.1.127) (Inositol 1,4,5- trisphosphate 3-kinase B) (IP3K B) (IP3 3-kinase B) (IP3K-B). [Source:UniProtKB/Swiss-Prot;Acc:P42335] ========== block280302 [novel_randfoldOK] ========== #randfold block280302: 0.002 #forester #identity: 0.00 block280302 AGTGTGTGCAGGTACTCAGA #rat_gr201879_libT3S2 20 1 block280302 gagggaaaggaccacAGTGTGTGCAGGTACTCAGAcaggagtggagggcctggcctgctgggtgcacaggcactccctagtgtaccagtccctcc *********************************************************************************************** block280302 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004834 ENSRNOG00000003635 NP_001099453.1 block280302 ((((((..((..(((((...((((..((((((((.((((...((....))...))))))))))))....))))...)).)))..))..)))))). 1.000 -45.70 # #block280302 chromosome:13:99101852:99101946:-1 Same_strand|Intronic_coding|ENSRNOT00000004834|ENSRNOG00000003635 ## ENSRNOG00000003635|protein_coding|NP_001099453.1|dispatched homolog 1 [Source:RefSeq_peptide;Acc:NP_001099453] ========== block280694 [novel_randfoldOK] ========== #randfold block280694: 0.004 #forester #identity: 0.00 block280694 GCACTGGGCCCTTCCCCCAA #rat_gr531431_libT1S2 20 1 block280694 ccaaggctttggggagattagctttgtgcaaactcagtcattgccaaaaccagctaggattaactggtctgtcagtGCACTGGGCCCTTCCCCCAAagcgtgg ******************************************************************************************************* block280694 (((..(((((((((.((...(((..(((((....(((...............(((((......))))))))....)))))..)))...))))))))))).))) 0.420 -39.96 # #block280694 chromosome:13:100214109:100214211:-1 intergenic ========== block281326 [novel_randfoldOK] ========== #randfold block281326: 0.002 #forester #identity: 0.00 block281326 AACGCCTCCCATTCAGACTT #rat_gr36364_libT1S2 20 1 block281326 gaagttagggAACGCCTCCCATTCAGACTTcagcactacatactaagtgtgaagtctgatgggtgcgggggaagtagtca ******************************************************************************** block281326 ((..........(((..((((.((((((((((.((((........)))))))))))))))))).)))..........)). 0.930 -31.35 # #block281326 chromosome:13:101467106:101467185:-1 intergenic ========== block282289 [novel_randfoldOK] ========== #randfold block282289: 0.005 randfold human106p15_block282289: 0.031 #forester human106p15_block282289: 0.363426 #identity: 68.92 block282289 TGGGGGGTGAGGGGGAACCT #rat_gr1042022_libT1S1 20 1 block282289 AAGGCTAACTTTTCTAGTGGTTCCTGTGGGGGGTGAGGGGGAACCTTTGTGTGTAAGCTCCAGCACCGTTCCCTGCCAAACCTCCCCAGTACCTCCACTGGACAGCTGTCCTT human106p15 --GGAGAGCTC---------------TGGGGGGTGAGGGGGCACCT----------GGTTGAGCCTTGTCTCCTTT--GGCCTCCCA---GCCTCTA--GGCCAGGAG----- ** * ** *************** **** * * *** ** *** ****** **** * ** *** * block282289 ((((.((.((..((((((((...(((.(((((((..((((((((....((((..........)))).))))))..))..)))))))))).....)))))))).)).)).)))) 0.990 -44.40 # human106p15 ((((((..( (((((((((((((((((... ((.....)).))))))))). .)))))))) ).)))). ..))..... 0.986 -35.70 # #block282289 chromosome:13:104104893:104105005:-1 intergenic #human106p15 chromosome:19:54993307:54993380:1 Same_strand|Intronic_coding|ENST00000354293|ENSG00000196961|protein_coding|AP-2 complex subunit alpha-1 (Adapter-related protein complex 2 alpha-1 subunit)(Adaptor protein complex AP-2 subunit alpha-1)(Alpha1-adaptin)(Plasma membrane adaptor HA2/AP2 adaptin alpha A subunit)(Alpha-adaptin A)(Clathrin assembly protein complex 2 alpha-A large chain)(100 kDa coated vesicle protein A) [Source:UniProtKB/Swiss-Prot;Acc:O95782] ========== block282646 [novel_randfoldOK] ========== #randfold block282646: 0.007 #forester #identity: 0.00 block282646 GAGTGGTAATCCTGGCTAGTTCT #rat_gr517330_libT1S1 23 1 block282646 atacgtgtgttggGAGTGGTAATCCTGGCTAGTTCTatcccatgtggcttgaaaagtatattcatgaggcaacttgggctcagaaagaccaaggatacacattcattctcatatgtgt ********************************************************************************************************************** block282646 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000057283 ENSRNOG00000002627 NP_001100669.1 block282646 (((((((((....(((((((.(((((((((..((((..((((.((.(((((((.......))))...))).)).))))...)))))).))).)))))).))))).....))))))))) 0.990 -36.60 # #block282646 chromosome:13:105168412:105168529:-1 Same_strand|Boundary_non-coding|ENSRNOT00000003556|ENSRNOG00000002627 ## Same_strand|Intronic_non-coding|ENSRNOT00000057283|ENSRNOG00000002627 ## ENSRNOG00000002627|protein_coding|NP_001100669.1|potassium channel tetramerisation domain containing 3 [Source:RefSeq_peptide;Acc:NP_001100669] ========== block284919 [novel_randfoldOK] ========== #randfold block284919: 0.003 #forester #identity: 0.00 block284919 CTGACCTTTCTCTTTCCTTCCA #rat_gr437471_libT3S1 22 1 block284919 cagttatatgtagtggaagcaggagggattggtatctggattctcaggtaagggtcttCTGACCTTTCTCTTTCCTTCCAtaaatgaatgctga ********************************************************************************************** block284919 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000010799 ENSRNOG00000008193 Crry block284919 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000057132 ENSRNOG00000008193 Crry block284919 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000057131 ENSRNOG00000008193 Crry block284919 ((((..(((...(((((((..(((((((..(((....(((((((......)))))))....)))..))))))).)))))))..)))...)))). 0.730 -31.70 # #block284919 chromosome:13:111049925:111050018:-1 Same_strand|Intronic_coding|ENSRNOT00000057131|ENSRNOG00000008193 ## ENSRNOG00000008193|protein_coding|Crry|Complement regulatory protein Crry precursor (Antigen 5I2). [Source:UniProtKB/Swiss-Prot;Acc:Q63135] ========== block285182 [novel_randfoldOK] ========== #randfold block285182: 0.003 #forester #identity: 0.00 block285182 GGGTTTTTATTTTATTTTTTT #rat_gr617396_libT2S2 21 1 block285182 actagaataaaataaaatttaagaccaaaacttctaattggtGGGTTTTTATTTTATTTTTTTgtagt ******************************************************************** block285182 ((((.((.((((((((((..((((((...(((.......))).)))))).)))))))))).)).)))) 1.000 -17.40 # #block285182 chromosome:13:519961:520028:1 intergenic ## {Repeats: dust 520006 520023 0 class=dust} ========== block289065 [novel_randfoldOK] ========== #randfold block289065: 0.005 #forester #identity: 0.00 block289065 CTTCCCTAGCAGTGCCAACCAG #rat_gr461644_libT4S2 22 1 block289065 ttgtctctctaaCTTCCCTAGCAGTGCCAACCAGcatcttggctctgactcttcccgttgccttcatgaactgctggtccttactgctcttccgaacatgaagatgaa ************************************************************************************************************ block289065 ((((((.((....(((...(((((((...(((((((((..(((..((........))..))).....))..)))))))...))))))).....)))...)))))))). 0.940 -27.40 # #block289065 chromosome:13:11410505:11410612:1 intergenic ========== block289527 [novel_randfoldOK] ========== #randfold block289527: 0.006 #forester #identity: 0.00 block289527 GGAAGGTTGGAGGTAATCAC #rat_gr582834_libT3S1 20 1 block289527 acatgctcgtgctttcagctcatgtgccagcctctctgcagccttgtgggacatcctgtcacctgtgagagggtgaGGAAGGTTGGAGGTAATCACtgagggagggctcgtccgtgt ********************************************************************************************************************* block289527 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003840 ENSRNOG00000002821 Phlpp block289527 (((((..((.((((((..((((.(((...(((((....(((((((......((((((.(((....))).))))))...))))))))))))...))))))).)))))).))..))))) 0.630 -48.60 # #block289527 chromosome:13:12483337:12483453:1 Same_strand|Intronic_coding|ENSRNOT00000003840|ENSRNOG00000002821 ## ENSRNOG00000002821|protein_coding|Phlpp|PH domain leucine-rich repeat protein phosphatase (EC 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) (Phlpp1). [Source:UniProtKB/Swiss-Prot;Acc:Q9WTR8] ========== block291495 [novel_randfoldOK] ========== #randfold block291495: 0.009 #forester #identity: 0.00 block291495 TATTTTATATTTATATGTCT #rat_gr803211_libT3S2 20 1 block291495 atgctggaaatcatacattatatctgatataaaacatagatcaagtgtgaatggagtgtttttttacaatcTATTTTATATTTATATGTCTgttttttggcat ******************************************************************************************************* block291495 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000041413 ENSRNOG00000032490 Cdh7 block291495 ((((..((((.((.(((.((((...((((((((..((((((....((((((...........))))))))))))))))))))))))))).)).))))..)))) 0.530 -22.70 # #block291495 chromosome:13:16974891:16974993:1 Same_strand|Intronic_coding|ENSRNOT00000041413|ENSRNOG00000032490 ## ENSRNOG00000032490|protein_coding|Cdh7|cadherin 7, type 2 [Source:RefSeq_peptide;Acc:NP_001012755] ## {Repeats: dust 16974955 16974975 0 class=dust} ========== block299725 [novel_randfoldOK] ========== #randfold block299725: 0.008 #forester #identity: 0.00 block299725 TACTCCATCTTCCACTCTTGT #rat_gr754471_libT5S2 21 1 block299725 agaccagtctgtgcttcttgagaccctgtctcaatagaagggaagaggaagggtggggagacacTACTCCATCTTCCACTCTTGTtaggcactgtgtatggagaggtgtaatgggtc ********************************************************************************************************************* block299725 .((((....((..((((((...((..(((((.((((..(((((((((((..((((......))))..))).)))))).))..)))))))))....))...))))))..))...)))) 0.920 -41.60 # #block299725 chromosome:13:31645554:31645670:1 intergenic ========== block300568 [novel_mirtron_randfoldOK] ========== #randfold block300568: 0.004 #forester #identity: 0.00 block300568 TGGTTCTTTTTCACTCTCCCA #rat_gr1069342_libT1S1 21 2 block300568 TGGTTCTTTTTCACTCTCCCAG #rat_gr1069343_libT1S1 22 2 block300568 TGGTTCTTTTTCACTCTCCCAGA #rat_gr1069344_libT1S1 23 1 block300568 agcaaggactggggtagtgtggggaccttttagctttctacttacaTGGTTCTTTTTCACTCTCCCAGAttagcctgcta ******************************************************************************** block300568 ------------------------------------------------------------------------------------------ #ENSRNOT00000023321 ENSRNOG00000030901 block300568 ------------------------------------------------------------------------------------------ #ENSRNOT00000041535 ENSRNOG00000030901 block300568 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>> #ENSRNOT00000003435 ENSRNOG00000002514 LOC304743 block300568 (((.(((.(((((..((((.(((((((....((.......)).....)))))))...))))..))))).....)))))). 1.000 -27.60 # #block300568 chromosome:13:33527769:33527848:1 Opposite_strand|Intronic_coding|ENSRNOT00000023321|ENSRNOG00000030901 ## Same_strand|Boundary_coding|ENSRNOT00000003435|ENSRNOG00000002514 ## ENSRNOG00000002514|protein_coding|LOC304743|Coiled-coil domain-containing protein 93. [Source:UniProtKB/Swiss-Prot;Acc:Q5BJT7] ## ENSRNOG00000030901|protein_coding|| ========== block300617 [novel_randfoldOK] ========== #randfold block300617: 0.004 #forester #identity: 0.00 block300617 TCTTACAAGGCATCTTCTCA #rat_gr910954_libT5S2 20 1 block300617 aacatagaaggtgagactgccttcatagagataaaaacagggaccacagagactcagccagagctcaacTCTTACAAGGCATCTTCTCAtccagactgttg ***************************************************************************************************** block300617 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000023321 ENSRNOG00000030901 block300617 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000041535 ENSRNOG00000030901 block300617 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000037203 ENSRNOG00000025430 Ddx18 block300617 --------------------------------------------------------------------------------------------------------------- #ENSRNOT00000028172 ENSRNOG00000025430 Ddx18 block300617 ((((.....(((((((.((((((...((((..................(((.(((.....))))))..))))...))))))...))))))).....)))). 0.730 -23.95 # #block300617 chromosome:13:33594712:33594812:1 Opposite_strand|Intronic_coding|ENSRNOT00000037203|ENSRNOG00000025430 ## ENSRNOG00000030901|protein_coding|| ## ENSRNOG00000025430|protein_coding|Ddx18|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:RefSeq_peptide;Acc:NP_001006997] ========== block301627 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block301627: 0.010 #forester #identity: 0.00 block301627 TGGGAACATTTGTGTCCA #rat_gr1022039_libT1S1 18 4 block301627 TGGGAACATTTGTGTCCAC #rat_gr1022040_libT1S1 19 3 block301627 TGGGAACATTTGTGTCCA #rat_gr1022039_libT1S2 18 1 block301627 TGGGAACATTTGTGTCCA #rat_gr1022039_libT2S1 18 1 block301627 TGGGAACATTTGTGTCCA #rat_gr1022039_libT3S2 18 1 block301627 ttcactgtgtaaacatcataaaatacagacacaaactcctatggctctcaaaccattatgcagtataatcagtgtgtttgtttgtctcTGGGAACATTTGTGTCCACaggag **************************************************************************************************************** block301627 .((.(((((..................((((((((.(((((.(((...(((((((((((........)).)))).)))))...)))..)))))...))))))))))))))). 0.860 -27.86 # #block301627 chromosome:13:36567720:36567831:1 intergenic ========== block304777 [novel_randfoldOK] ========== #randfold block304777: 0.001 #forester #identity: 0.00 block304777 ACCATGGCTGTGGGTAACACT #rat_gr93271_libT1S2 21 1 block304777 agaaaagcagatgttatccacagtcatggttttctcatctcagggcttgttggtaaaACCATGGCTGTGGGTAACACTattttcta ************************************************************************************** block304777 ------------------------------------------------------------------------------------------------ #ENSRNOT00000031674 ENSRNOG00000006733 RGD1566016_predicted block304777 ((((((..((.((((((((((((((((((((((..((...(((...))).))..)))))))))))))))))))))))).)))))). 1.000 -41.00 # #block304777 chromosome:13:44359326:44359411:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000061008|ENSRNOG00000006733 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000031674|ENSRNOG00000006733 ## ENSRNOG00000006733|protein_coding|RGD1566016_predicted| ========== block306442 [novel_randfoldOK] ========== #randfold block306442: 0.001 #forester #identity: 0.00 block306442 TTTTGGTTGGGTTTTGGTTT #rat_gr1187220_libT1S1 20 1 block306442 ttggtttTTTTGGTTGGGTTTTGGTTTtacgggtgttttgtttttgtttctgttttgtttttgagacagggtctcattctgcaaccctgcttggcccgaaactcactatatagaccag ********************************************************************************************************************** block306442 .((((((...(((.((((((((((((...((((.((..(((...((.(((((((((......)))))))))...))....)))))))))...)))).)))))))))))...)))))). 0.990 -36.00 # #block306442 chromosome:13:47382623:47382740:1 intergenic ## {Repeats: dust 47382658 47382678 0 class=dust} ========== block306652 [novel_randfoldOK] ========== #randfold block306652: 0.001 #forester #identity: 0.00 block306652 AGCCCTTCCTTCTACAGTCCTACT #rat_gr159367_libT1S2 24 1 block306652 ggcttctctcctataaacctcatctAGCCCTTCCTTCTACAGTCCTACTgtcctgctgacagagggaaggactgacagagggaaggaaagagagaaggaatagtgggtgcc *************************************************************************************************************** block306652 (((....(((((((...(((..(((...((((((((((.(((((((.((.((.((....)))).)).)))))))..))))))))))....)))..))).)))).))).))) 1.000 -45.60 # #block306652 chromosome:13:47700006:47700116:1 intergenic ========== block306812 [novel_randfoldOK] ========== #randfold block306812: 0.003 #forester #identity: 0.00 block306812 TCTTTCTCCCTTTTCCTACTTT #rat_gr915571_libT4S1 22 1 block306812 ggtaccaagtcctggggaagggggacatggagtctttttcttttTCTTTCTCCCTTTTCCTACTTTgtcttccc ************************************************************************** block306812 ------------------------------------------------------------------------------------ #ENSRNOT00000006969 ENSRNOG00000005093 RGD1560339_predicted block306812 ((.((.((((...((..((((((((...((((...........)))).))))))))..)).)))).))...)). 1.000 -23.60 # #block306812 chromosome:13:47956633:47956706:1 Opposite_strand|Intronic_coding|ENSRNOT00000006969|ENSRNOG00000005093 ## ENSRNOG00000005093|protein_coding|RGD1560339_predicted| ## {Repeats: CT-rich 10 32 1 class=Low_complexity,CT-rich 3 90 1 class=Low_complexity,dust 47956712 47956734 0 class=dust} ========== block306857 [novel_randfoldOK] ========== #randfold block306857: 0.002 #forester #identity: 0.00 block306857 CTTCCCTCCTTCTTTCCCAG #rat_gr461722_libT4S2 20 1 block306857 gctgggcttggcgagggagggagacacgggggggggggagtagtaggggggaggaggagtcaaggaaactttctatgctgtggctcgctcccCTTCCCTCCTTCTTTCCCAGctggca ********************************************************************************************************************** block306857 (((.(((.(((.(((((((((((....((..((((((((((..(((.((..((...............))..))...)))..)))).))))))..)))))))))))))))))))))). 0.960 -56.96 # #block306857 chromosome:13:48066445:48066562:1 intergenic ========== block307420 [novel_randfoldOK] ========== #randfold block307420: 0.001 #forester #identity: 0.00 block307420 ACCCCAACAGCCCAGGACCAG #rat_gr95717_libT1S2 21 1 block307420 gtgcccacagcccctggtcatagcgtccACCCCAACAGCCCAGGACCAGggagcccacgctcccaagagtcctgggatgtcgcttggtggacctccactatgtaggtgtgggta ****************************************************************************************************************** block307420 .((((((((...((((..(((((.(((((((...(((.((((((((..((((((....))))))....)))))))).))).....))))))).....))))))))))))))))) 1.000 -58.40 # #block307420 chromosome:13:49203602:49203715:1 intergenic ========== block310543 [novel_randfoldOK] ========== #randfold block310543: 0.007 randfold human15p16_block310543: 0.140 #forester human15p16_block310543: 0.32865 #identity: 77.27 block310543 ATCTGGGCATGGGGTCTTC-----------AG #rat_gr225026_libT3S2 21 2 block310543 ACTTGCAGCCTGAGGAAGGCATAAAAAGAGTGATCTGGGCATGGGGTCTTC-----------AGCAGTAGCTA---GGATTCTACTAGTAGATCTTTTGGAGTAACATCTAAGGCTGAGGT human15p16 --------------------------------ATCTGGGCATGGGTTCTTCCCTGTCTGATAAGTGGCGGGTACATGGCACCTCCTAGTA------------------------------- ************* ***** ** * * ** ** ** ****** block310543 ((((.((((((.(((...((...((((((.....((((...(((((((((. (((....)))) ))))))))))))....))))))...))....))).)))))))))) 0.980 -33.20 # human15p16 ..(((((...((((.((..((((((........)))))).....)).))))))))).. 0.946 -17.60 # #block310543 chromosome:13:58076616:58076722:1 intergenic #human15p16 chromosome:19:17762303:17762449:1 intergenic ========== block313902 [novel_randfoldOK] ========== #randfold block313902: 0.009 #forester #identity: 0.00 block313902 TAGCCCCACTGATGTGGCAATGT #rat_gr770305_libT5S1 23 2 block313902 ccatagaacgctgtTAGCCCCACTGATGTGGCAATGTggctcatagactcctccaagaaatggcctccccaagctgtcacatcagtaggagggcagtcaacatgga ********************************************************************************************************** block313902 ((((.....((((((..((..((((((((((((.((.(((.(((...((......))..))))))....))...)))))))))))).))..))))))....)))). 0.890 -35.20 # #block313902 chromosome:13:67459755:67459860:1 intergenic ========== block314182 [novel_randfoldOK] ========== #randfold block314182: 0.003 randfold human27p16_block314182: 0.166 #forester human27p16_block314182: 0.349257 #identity: 59.18 block314182 TTCATTCCATGGTGTGCCGAGA #rat_gr1113824_libT5S2 22 1 block314182 CTTCATCTTGGCACCCACGGGGAAGTGGAATATTCATTCCATGGTGTGCCGAGATCGAGC human27p16 TATTAACAGATCAC-----AGGAGCCAGCTTCCTCATTCCATGGTGTG------TTAGGC * * * *** *** * * *************** * ** block314182 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000038183 ENSRNOG00000027697 Nmnat2_predicted block314182 (((.(((((((((((((...((.((((((...)))))))).))).)))))))))).))). 1.000 -26.60 # human27p16 ..((((((.((((. .((((..((....))..)))).)))).)) )))).. 0.999 -11.20 # #block314182 chromosome:13:67987292:67987351:1 Same_strand|Intronic_coding|ENSRNOT00000038183|ENSRNOG00000027697 ## ENSRNOG00000027697|protein_coding|Nmnat2_predicted|nicotinamide nucleotide adenylyltransferase 2 [Source:RefSeq_peptide;Acc:NP_001041507] #human27p16 chromosome:11:107962715:107962814:-1 Same_strand|Intronic_coding|ENST00000265843|ENSG00000110723|protein_coding|Slp homolog lacking C2 domains b (SlaC2-b)(Exophilin-5) [Source:UniProtKB/Swiss-Prot;Acc:Q8NEV8] ========== block314520 [novel_randfoldOK] ========== #randfold block314520: 0.010 #forester #identity: 0.00 block314520 TGGCTCATCTCAGCTCCTTTG #rat_gr1016673_libT3S1 21 1 block314520 gatacagagagatttctcctgaatgccccatcaggTGGCTCATCTCAGCTCCTTTGctgtggctggaggtgggatggggggaggggggttaaaagttatgtctccatca ************************************************************************************************************* block314520 (((...((((.((..((....(((.((((.((......(((((((((.((((...((....)).)))).)))))))))..)))))).)))...))..)).)))).))). 0.880 -41.70 # #block314520 chromosome:13:68610097:68610205:1 intergenic ========== block314564 [novel_randfoldOK] ========== #randfold block314564: 0.001 #forester #identity: 0.00 block314564 TGCCAACATGCCTTCCACCT #rat_gr963769_libT1S1 20 1 block314564 cctggctcaagtggtgggaggtgtgtttgtccgtgcatgctcatgtctatgtgtatgcatgcgtgagcctatgtgtcccTGCCAACATGCCTTCCACCTgccaagg ********************************************************************************************************** block314564 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003239 ENSRNOG00000002369 Rgs8 block314564 ((((((......(((((((((((((((.((....((((((((((((..((((....))))))))))))....))))....)).))))))))))))))).)))).)) 0.620 -46.90 # #block314564 chromosome:13:68736197:68736302:1 Same_strand|Intronic_non-coding|ENSRNOT00000003239|ENSRNOG00000002369 ## ENSRNOG00000002369|protein_coding|Rgs8|Regulator of G-protein signaling 8 (RGS8). [Source:UniProtKB/Swiss-Prot;Acc:P49804] ========== block315160 [novel_randfoldOK] ========== #randfold block315160: 0.001 #forester #identity: 0.00 block315160 CCTGTGGCGAGTAGGATCCCA #rat_gr381921_libT5S2 21 1 block315160 ctgtcttctcaagcttctcCCTGTGGCGAGTAGGATCCCAtacttccccatggttaccatgctgtggtcaggcactatgggagtctgcccaccacagacagattcaccaaccacagc ********************************************************************************************************************* block315160 ((((...........(((..((((((...((((..((((((((((..(((((((......)))))))..)))...)))))))..))))...))))))..)))..........)))). 0.960 -38.60 # #block315160 chromosome:13:70230335:70230451:1 intergenic ========== block315351 [novel_randfoldOK] ========== #randfold block315351: 0.001 #forester #identity: 0.00 block315351 TTTCTGGAAAAGACTAGCTG #rat_gr1164790_libT4S2 20 1 block315351 gctcacagtcagttccgtccctttccagatagtgacttacTTTCTGGAAAAGACTAGCTGctgccagc ******************************************************************** block315351 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004772 ENSRNOG00000003550 Acbd6 block315351 (((..(((.(((((..(((..((((((((.((((...)))).)))))))).))).))))))))..))) 1.000 -25.50 # #block315351 chromosome:13:70626977:70627044:1 Same_strand|Intronic_coding|ENSRNOT00000004772|ENSRNOG00000003550 ## ENSRNOG00000003550|protein_coding|Acbd6|Acyl-CoA-binding domain-containing protein 6. [Source:UniProtKB/Swiss-Prot;Acc:Q5RJK8] ========== block315361 [novel_randfoldOK] ========== #randfold block315361: 0.001 #forester #identity: 0.00 block315361 TAAGCATGTATATACACACAT #rat_gr723316_libT3S1 21 1 block315361 gagaaataaaaacaatgTAAGCATGTATATACACACATatacatatgtatacagtgcgtgtgtgtacatgctcatgtgtatgtgtggtgctcc ********************************************************************************************* block315361 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004772 ENSRNOG00000003550 Acbd6 block315361 (((..(((...((.((((.(((((((((((((((.(((((((....))))...))).))))))))))))))).))))))...)))....))). 0.990 -31.30 # #block315361 chromosome:13:70641173:70641265:1 Same_strand|Intronic_coding|ENSRNOT00000004772|ENSRNOG00000003550 ## ENSRNOG00000003550|protein_coding|Acbd6|Acyl-CoA-binding domain-containing protein 6. [Source:UniProtKB/Swiss-Prot;Acc:Q5RJK8] ========== block315787 [novel_randfoldOK] ========== #randfold block315787: 0.004 randfold mouse103p16_block315787: 0.002 #forester mouse103p16_block315787: 0.889392 #identity: 94.92 block315787 AGCCGCCGGCAACTCCGGCCCA #rat_gr159525_libT5S2 22 1 block315787 GCTCTGAGGAGTCTGCGTGAGGAGCCGCCGGCAACTCCGGCCCAGAGGGCCTGGGTTTGGGCCGGAGAGGCCGGAGCGGTGCCGGGAGCTCCGAGGCCGGAGCAGAG mouse103p16 ----------------------AGCCGCCGGCAACTCCGGCCCAGAGGGCCTGGGCTTGGGCCGGAGAGACCGGAGCGGCG-------------------------- ********************************* ************* ********* * block315787 ((((((....((((......(((((..((((((.((((((((.....(((((......))))).....))))))))...))))))..))))).)))))))))).... 0.790 -58.90 # mouse103p16 .((((((((...((((((((((...(((....)))))))))))))...)))..))))). 1.000 -39.50 # #block315787 chromosome:13:71546760:71546866:1 intergenic #mouse103p16 chromosome:1:158489001:158489147:1 intergenic ## {SimpF: oe = 0.84 -1 CpG} ========== block322428 [novel_mirtron_randfoldOK] ========== #randfold block322428: 0.002 #forester #identity: 0.00 block322428 CCATTTTGATCCTGTCCGCAG #rat_gr338991_libT2S1 21 1 block322428 gggcagagctgtggggagggttagggaagggggggttgcatggcgtgtatcctggcttgtggtttcggggttccatcttcctcCCATTTTGATCCTGTCCGCAGctgtcaagttgccc ********************************************************************************************************************** block322428 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>> #ENSRNOT00000006141 ENSRNOG00000004414 F11r block322428 (((((((((((((((.((((((((((...((((((....((((.....((((((((.....))..)))))).))))...)))))).)))))))))).)))))))))......)))))) 0.980 -54.40 # #block322428 chromosome:13:87389871:87389988:1 Same_strand|Intronic_coding|ENSRNOT00000006141|ENSRNOG00000004414 ## ENSRNOG00000004414|protein_coding|F11r|Junctional adhesion molecule A precursor (JAM-A) (Junctional adhesion molecule 1) (JAM-1) (CD321 antigen). [Source:UniProtKB/Swiss-Prot;Acc:Q9JHY1] ========== block326532 [novel_randfoldOK] ========== #randfold block326532: 0.003 #forester #identity: 0.00 block326532 CTGGGCCTCTGCAGTGTTTC #rat_gr450720_libT4S1 20 1 block326532 gagcctcCTGGGCCTCTGCAGTGTTTCaccctccttggcagacccttctgggtcccttgcagggtttgacccctgctgagccctgct *************************************************************************************** block326532 ------------------------------------------------------------------------------------------------- #ENSRNOT00000004927 ENSRNOG00000003629 NP_001099450.1 block326532 .(((.....(((.(((.((((.(((..(((((....((..(((((....)))))))....)))))..)))..)))).)))))).))) 0.980 -36.10 # #block326532 chromosome:13:96915548:96915634:1 Opposite_strand|Intronic_coding|ENSRNOT00000004927|ENSRNOG00000003629 ## ENSRNOG00000003629|protein_coding|NP_001099450.1|nuclear VCP-like [Source:RefSeq_peptide;Acc:NP_001099450] ========== block327799 [novel_randfoldOK] ========== #randfold block327799: 0.005 randfold mouseZ17p16_block327799: 0.037 #forester mouseZ17p16_block327799: 0.516582 #identity: 90.91 block327799 CCAGCACTCATAGTCACCTACGAC #rat_gr331707_libT3S1 24 1 block327799 TGGACATTTGCACATGCTGTTGGTGCACTGTGAGGTTGTACTGCTCTGTCCAGCACTCATAGTCACCTACGACTTCTTTGCCCCAGTATAGGTCCAC mouseZ17p16 --------------TGCTG--GCTGCACTGTGAGGTTGTACTGCTCAGTCCAGCACTCGCAGCCACCTACG-------------------------- ***** * *********************** *********** ** ******** block327799 (((((...(((....(((((.((((.((((((((((((.((......)).)))).)))))))))))).)))........))....)))...))))). 0.480 -32.90 # mouseZ17p16 ...(( (((((.....(((((((.(((....))).)))).))))))))))...... 0.981 -20.50 # #block327799 chromosome:13:100152151:100152247:1 intergenic #mouseZ17p16 chromosome:1:185999596:185999732:1 intergenic ========== block328060 [novel_randfoldOK] ========== #randfold block328060: 0.001 #forester #identity: 0.00 block328060 CTGACGTCAGAACTGGCTGT #rat_gr437611_libT5S2 20 1 block328060 gggatgaagtcatcaCTGACGTCAGAACTGGCTGTaaacagcttctggctgtcagtggacagttctgatgctaacaggggcgacttgtttccg ********************************************************************************************* block328060 ((((..(((((.((.(((.(((((((((((((((...(((((.....)))))))))...)))))))))))....))).)).)))))..)))). 0.520 -38.70 # #block328060 chromosome:13:100738158:100738250:1 intergenic ========== block328501 [novel_randfoldOK] ========== #randfold block328501: 0.003 #forester #identity: 0.00 block328501 TAAGGCATGTCTAGGGCAGA #rat_gr726468_libT3S1 20 1 block328501 tatgctgTAAGGCATGTCTAGGGCAGAgacagtatctttcttcttccgtgagcatctctaagcatctggacatctgtcagtctgtcaatctgtcctgaactgcaagttcatacagtataa ************************************************************************************************************************ block328501 (((((((((..(((.((.((((((((((((((............((((.((((........)).))))))...........)))))..))))))))).))))).......))))))))). 0.840 -37.70 # #block328501 chromosome:13:101504870:101504989:1 intergenic ========== block330407 [novel_randfoldOK] ========== #randfold block330407: 0.002 #forester #identity: 0.00 block330407 ACTGTACCCCTGTTCTTTTC #rat_gr126452_libT5S2 20 1 block330407 gggtggggggccgggaaggggacaagtgctgtgggttcactttcggcgcactcccgtgccaacctgaacaaagACTGTACCCCTGTTCTTTTCccttgctccctgccc ************************************************************************************************************ block330407 (((..((((((.((((((((((((.((((.((..(((((..((.(((((......)))))))..)))))....)).))))...))))))))))))..))))))..))) 1.000 -55.40 # #block330407 chromosome:13:106586270:106586377:1 intergenic ========== block330594 [novel_randfoldOK] ========== #randfold block330594: 0.001 #forester #identity: 0.00 block330594 TCCTCACTACACTAGGTGTC #rat_gr871971_libT2S2 20 1 block330594 agacaggagacacagagacagagacagagagaaagggagagacagaaagagacagagagagcaagcacatcttctcttggcgccaTCCTCACTACACTAGGTGTCtcctgtctg ****************************************************************************************************************** block330594 (((((((((((((..((....((...(((.((...((.........((((((.(((.............)))))))))....)).))))).))...))..))))))))))))). 0.970 -36.44 # #block330594 chromosome:13:107162861:107162974:1 intergenic ========== block331916 [novel_randfoldOK] ========== #randfold block331916: 0.005 randfold mouseZ20p16_block331916: 0.026 #forester mouseZ20p16_block331916: 0.325609 #identity: 83.62 block331916 GTACATCTGAGGGTGATGGA #rat_gr628488_libT2S2 20 1 block331916 -------------CCAGACAGACATGTCCCAGAAGGTGTACATCTGAGGGTGATGGAGAAATAGTTTGCCTTCTATT-------------AATCTTTCCGTTGACCCAAGAGTCACATTTTGAATGT-ATGTTGTTCTCTGGA---- mouseZ20p16 AGTCTTCTTTCAATCAGGCACACTTGTTCCAGAAGGTATACATCTGGGGGCAATGGAGAAATAGTTTGCCTTCTATTGTTCTAGAAACTAAATCTCTCCATTGACCAAAGAGCCAAATTTTGAATGTAATGGTGTCTTTTAGAGACT *** ** ** *** ********* ******** *** ************************* ***** *** ****** ***** ** *********** *** *** * * ** block331916 (((((..((((((...(((((.(((.((.(((..(((((((((((((((((........))))) ....)))))))).)))).)))))))).)))))....) )))))....))))). 1.000 -36.30 # mouseZ20p16 ((((.(((.......((((((...((((.((((((((.....(((..((.(((((((((....(((((..(((((......)))))..))))).))))))))).))..))))))...))))))))).....))))))...))))))) 0.867 -37.20 # #block331916 chromosome:13:110520258:110520373:1 intergenic #mouseZ20p16 chromosome:1:196402367:196402513:1 intergenic ========== block331935 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block331935: 0.003 randfold mouseZ21p16_block331935: 0.292 #forester mouseZ21p16_block331935: 0.513122 #identity: 90.32 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT4S2 18 11 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT1S1 18 6 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT4S1 18 5 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT3S2 18 4 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT1S2 18 3 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT2S1 18 3 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT5S1 18 2 block331935 TGGGAGTCCC--TGTGTCCCA #rat_gr1031765_libT1S1 19 2 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT3S1 18 1 block331935 TGGGAGTCCC--TGTGTCCC #rat_gr1031764_libT5S2 18 1 block331935 TGGGAGTCCC--TGTGTCCCA #rat_gr1031765_libT2S2 19 1 block331935 TGGGAGTCCC--TGTGTCCCA #rat_gr1031765_libT5S1 19 1 block331935 TCATATCTTGGGAGTCCC--TGTGTCCCATCATGTTCTGGGAGCTGACAAGTAACAATAGCACTGTCTAGGTAGGAATGGAGGGTGGGAGCAGGAGAGGTCCAGGAAGGAA mouseZ21p16 --------TGGGAGTCCCTGTGTGTCCCGTCATGTTCTGGGGGCTGGCAAGTAACAATAGCACTGTCTAGATAGGAGAGGAAGGTGGAAGCGGGAGAGGTCCA-------- ********** ******** ************ **** *********************** ***** *** ***** *** *********** block331935 +++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000009900 ENSRNOG00000007324 NP_001099458.1 block331935 ((...(((((((..(((( (((.(((((((.((((((.......(((.(((.........))))))......))))))...)))))))))))).))..)))))))..)). 0.990 -38.92 # mouseZ21p16 .(((..(((((((...((((.((...(((((.((((..((...........))...))))...)))))...)).)).))..))))).))..))). 0.866 -27.30 # #block331935 chromosome:13:110574693:110574801:1 Same_strand|Intronic_non-coding|ENSRNOT00000009900|ENSRNOG00000007324 ## ENSRNOG00000007324|protein_coding|NP_001099458.1|plexin A2 [Source:RefSeq_peptide;Acc:NP_001099458] #mouseZ21p16 chromosome:1:196462243:196462391:1 Same_strand|Intronic_non-coding|ENSMUST00000027952|ENSMUSG00000026640|protein_coding|plexin A2 Gene [Source:MGI (curated);Acc:Plxna2-001] ========== block331982 [novel_randfoldOK] ========== #randfold block331982: 0.004 randfold mouseZ22p16_block331982: 0.013 #forester mouseZ22p16_block331982: 0.591101 #identity: 94.50 block331982 TCTCCCACACAGACACATCCACA #rat_gr899143_libT2S2 23 2 block331982 ----------------AGGCCATACTTGCT----GACAGCCTTGGGTGTG-ATGTGTGTAGGAATGGAGATTGTATTTTTCTCTCATCTCCCACACAGACACATCCACAGGGTGACTGACAAGCGTACCTG--------------- mouseZ22p16 AGACTGAATGTTCCAAAGGCCATACTTGCTGACAGACAGCCTTGAGTGTGAAAGTGTGTAGGAGTGGAGATTGTA-TTTTCTCTCATCTCCCACACAGAAACATCCACGGGGTGACTGACAAGCATACCTGGCATTCTTTCAGGCT ************** ********** ***** * ********** *********** *********************** ******** *************** ****** block331982 +++++ ++++++++++++++ ++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ #ENSRNOT00000009900 ENSRNOG00000007324 NP_001099458.1 block331982 (((..((.((((.. ..((.((((((((((( .((((((..(((..(((((.........)))))..)))..))))))..)))))))).))).)).....)))).)).))). 0.980 -39.50 # mouseZ22p16 ...(((((..........((((....((((..(((.((.(((((..(((.....(((((.((((((((((..... ...)))).)).)))).)))))...)))..)).))).)).)))...))))....)))).....)))))... 0.920 -46.26 # #block331982 chromosome:13:110736538:110736647:1 Same_strand|Intronic_coding|ENSRNOT00000009900|ENSRNOG00000007324 ## ENSRNOG00000007324|protein_coding|NP_001099458.1|plexin A2 [Source:RefSeq_peptide;Acc:NP_001099458] #mouseZ22p16 chromosome:1:196621696:196621840:1 Same_strand|Intronic_coding|ENSMUST00000027952|ENSMUSG00000026640|protein_coding|plexin A2 Gene [Source:MGI (curated);Acc:Plxna2-001] ========== block333328 [novel_cloningOK] ========== #randfold block333328: 0.034 randfold mouseZ24p16_block333328: 0.005 #forester mouseZ24p16_block333328: 0.829086 #identity: 96.72 block333328 TCGAGCCTCGCGTCCGCCGA #rat_gr888008_libT2S1 20 3 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT1S1 23 2 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT3S1 23 2 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT2S2 21 2 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT3S1 21 2 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT3S2 21 2 block333328 TCGAGCCTCGCGTCCGCCGA #rat_gr888008_libT1S2 20 2 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT4S1 18 2 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT1S2 23 1 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT2S1 23 1 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT3S2 23 1 block333328 TCGAGCCTCGCGTCCGCCGACAC #rat_gr888011_libT5S2 23 1 block333328 TCGAGCCTCGCGTCCGCCGACA #rat_gr888010_libT1S1 22 1 block333328 TCGAGCCTCGCGTCCGCCGACA #rat_gr888010_libT2S1 22 1 block333328 CGAGCCTCGCGTCCGCCGAC #rat_gr390051_libT1S2 20 1 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT4S1 21 1 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT4S2 21 1 block333328 TCGAGCCTCGCGTCCGCCGAC #rat_gr888009_libT5S2 21 1 block333328 TCGAGCCTCGCGTCCGCCGA #rat_gr888008_libT3S1 20 1 block333328 TCGAGCCTCGCGTCCGCCGA #rat_gr888008_libT5S2 20 1 block333328 TCGAGCCTCGCGTCCGCCG #rat_gr888007_libT1S1 19 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT1S1 18 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT1S2 18 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT2S1 18 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT2S2 18 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT3S2 18 1 block333328 TCGAGCCTCGCGTCCGCC #rat_gr888006_libT5S1 18 1 block333328 GCCCCCACGGCCAGCCGTGGCGGTTGTCAAGGCGCGGGCGCGGGGCTCCGCCATAAAGGGGGGGTCGAGCCTCGCGTCCGCCGACACAAATCCGCCTGCGCCTCCGTGCTTAAAGGGG mouseZ24p16 ------------------------CGTCAAGGCGCGGGCGCGGGGCTCCGCCATAAA-GGGGAGTCGAGCCTCGCGTCCGCCGACA-------------------------------- ******************************** **** *********************** block333328 .(((((((((..((.((((((((.((((.....(((((((((((((((.(((..........))).))))))))))))))).)))).....))))).))).)))))))......)))) 0.860 -63.40 # mouseZ24p16 .(((.....(((((((((((((((..((..... ..))....))))))))))))))).))). 0.994 -35.60 # #block333328 chromosome:14:2325995:2326112:-1 intergenic ## {SimpF: 1 Eponine, -1 Eponine} #mouseZ24p16 chromosome:5:108416179:108416336:1 intergenic ## {Repeats: dust 0 class=dust} ## {SimpF: oe = 0.96 1 CpG, -1 Eponine, -1 Eponine, 1 Eponine, -1 Eponine, 1 Eponine, -1 Eponine} ========== block334584 [novel_randfoldOK] ========== #randfold block334584: 0.009 #forester #identity: 0.00 block334584 ATTGCTGGCTTCCCTGTGTCCTT #rat_gr244251_libT3S1 23 1 block334584 tacaagtatttatgtcatgtgcatgggaATTGCTGGCTTCCCTGTGTCCTTtgcctttttatttgcagtccatggggcacctgggaatgtcccaaatccaggctgcagacagggcttgtc ************************************************************************************************************************ block334584 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block334584 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block334584 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block334584 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block334584 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block334584 .((((((.....((((.(((((...(((.(((..((((((((.(((((((((((..........)))).....)))))))..))))).))).))).)))..)).)))))))..)))))). 0.960 -42.00 # #block334584 chromosome:14:4633848:4633967:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000049600|ENSRNOG00000033121 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000039905|ENSRNOG00000033121 ## Same_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## Same_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Same_strand|Boundary_non-coding|ENSRNOT00000061383|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block334585 [novel_randfoldOK] ========== #randfold block334585: 0.003 #forester #identity: 0.00 block334585 GAGGCCTTCCTGCTGGAGTTAG #rat_gr513229_libT2S2 22 1 block334585 tacagccactctgggctccataggaagaccttgtttcaatagtaaaaggagtcacctgcgagttcttactgtcttccctGAGGCCTTCCTGCTGGAGTTAGaatagctgt ************************************************************************************************************** block334585 ------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block334585 ------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block334585 ------------------------------------------------------------------------------------------------------------------------ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block334585 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block334585 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block334585 .(((((...(((.((((((((((((((.((((......((((((..((((.((......)).)))))))))).......)))).))))))).))))))))))...))))) 1.000 -40.42 # #block334585 chromosome:14:4634056:4634165:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000049600|ENSRNOG00000033121 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000039905|ENSRNOG00000033121 ## Same_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## Same_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Same_strand|Boundary_non-coding|ENSRNOT00000061383|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block334774 [novel_randfoldOK] ========== #randfold block334774: 0.003 #forester #identity: 0.00 block334774 TAGAGCCACTCTTCAAACCA #rat_gr762371_libT2S1 20 2 block334774 tgagtcaccaagagctcgaccaactccgcccTAGAGCCACTCTTCAAACCAgaacagttctctttctggttagagtcaaggttttggtattcatagccctgggctctgtgcactt ******************************************************************************************************************* block334774 .(((((((..((((((((............(((((((((((((...((((((((.((....)))))))))))))))...))))))))............))))))))))).)))) 0.910 -37.05 # #block334774 chromosome:14:5133711:5133825:-1 intergenic ========== block340731 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block340731: 0.001 #forester #identity: 0.00 block340731 TCCCTTGGGGGTGGGGGT #rat_gr865211_libT1S1 18 7 block340731 TCCCTTGGGGGTGGGGGT #rat_gr865211_libT2S1 18 2 block340731 TCCCTTGGGGGTGGGGGT #rat_gr865211_libT3S1 18 2 block340731 TCCCTTGGGGGTGGGGGT #rat_gr865211_libT5S1 18 2 block340731 TCCCTTGGGGGTGGGGGTGGGG #rat_gr865213_libT1S1 22 1 block340731 TCCCTTGGGGGTGGGGGTGGGG #rat_gr865213_libT4S2 22 1 block340731 TCCCTTGGGGGTGGGGGTGGG #rat_gr865212_libT1S2 21 1 block340731 TCCCTTGGGGGTGGGGGTGGG #rat_gr865212_libT3S2 21 1 block340731 TCCCTTGGGGGTGGGGGT #rat_gr865211_libT1S2 18 1 block340731 gtctgctaagcagaaggccagccccacacgcactatctccagggagtgggacTCCCTTGGGGGTGGGGGTggggctggccgttttcanagaattcaggct **************************************************************************************************** block340731 (((((((........((((((((((((.....((((((((((((((.....)))))).))))))))..))))))))))))........))....))))). 0.500 -56.99 # #block340731 chromosome:14:18013285:18013384:-1 intergenic ========== block340857 [novel_randfoldOK] ========== #randfold block340857: 0.001 #forester #identity: 0.00 block340857 TAACCTTCAGTTGAGAAGTTTT #rat_gr717027_libT5S2 22 1 block340857 tagctttgtgataagcagaccctcaacaccaggaaggtttagagtcttgttcgaaacctgggtttatcatgcattgactctaTAACCTTCAGTTGAGAAGTTTTaccagcta **************************************************************************************************************** block340857 (((((..((((......(((.((((((.....((((((((((((((.(((...((((....)))).....)))..))))))).))))))).))))))..))))))).))))) 0.520 -34.90 # #block340857 chromosome:14:18435686:18435797:-1 intergenic ========== block340945 [novel_randfoldOK] ========== #randfold block340945: 0.004 randfold human45p17_block340945: 0.208 #forester human45p17_block340945: 0.37491 #identity: 56.92 block340945 AAAACTCCTGGTTATGGTCA #rat_gr5676_libT2S1 20 1 block340945 GCTAAAAAACTCCTGGTTATGGTCAAGGTGAGCTTTT-------AAGGCTTCCTGATGAAGAGCAGGTGTTTGCAGTG human45p17 AGAGCAAAACTCCTGGTTACTGT---GGCCTGATTTTCAATCTGGAGCCCACTAGGCTCAGGGCTTTTTTTTTCT--- ************** ** ** * **** ** * * * ** ** * *** * block340945 ++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000047708 ENSRNOG00000021347 AC109311.12 block340945 ++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003745 ENSRNOG00000002792 Cxcl2 block340945 (((...((((.((((.((...(((.(((.(((((... ..)))))))))))...)).)))).))))..))). 1.000 -22.00 # human45p17 ((((.((((..(((((((...(( ((((.(((.....))).))...))))..))).))))..))))...)))) 0.929 -16.30 # #block340945 chromosome:14:18678239:18678309:-1 Same_strand|Intronic_coding|ENSRNOT00000047708|ENSRNOG00000021347 ## Same_strand|Boundary_non-coding|ENSRNOT00000039849|ENSRNOG00000021347 ## ENSRNOG00000002792|protein_coding|Cxcl2|Macrophage inflammatory protein 2 precursor (MIP2) (C-X-C motif chemokine 2) (CINC-3). [Source:UniProtKB/Swiss-Prot;Acc:P30348] ## ENSRNOG00000021347|protein_coding|AC109311.12|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like [Source:RefSeq peptide;Acc:NP_081064] #human45p17 chromosome:1:49994580:49994651:-1 Same_strand|Boundary_non-coding|ENST00000401055|ENSG00000186094|protein_coding|Cytosolic carboxypeptidase 6 (EC 3.4.17.-)(ATP/GTP-binding protein-like 4) [Source:UniProtKB/Swiss-Prot;Acc:Q5VU57] ## Same_strand|Intronic_coding|ENST00000401054|ENSG00000186094|protein_coding|Cytosolic carboxypeptidase 6 (EC 3.4.17.-)(ATP/GTP-binding protein-like 4) [Source:UniProtKB/Swiss-Prot;Acc:Q5VU57] ## {Repeats: dust 0 class=dust} ========== block346937 [novel_randfoldOK] ========== #randfold block346937: 0.007 #forester #identity: 0.00 block346937 ACCGCAGCCCAGGCAATGGAGAC #rat_gr101472_libT5S2 23 1 block346937 ggctcgcctcgctcacctgagctgggagACCGCAGCCCAGGCAATGGAGACccggggccgagggtcttctgggagccgggacagcggctgcaggctgcgggcgagtttggtgatgct ********************************************************************************************************************* block346937 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000003050 ENSRNOG00000002227 Kit block346937 ((((((((..((((.((((((((...((.((((..(((.(((...((((((((........)))))))).....))))))...))))))...)))).)))).))))..))))).))) 0.880 -61.40 # #block346937 chromosome:14:34984431:34984547:-1 Same_strand|Intronic_coding|ENSRNOT00000003050|ENSRNOG00000002227 ## ENSRNOG00000002227|protein_coding|Kit|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Source:RefSeq_peptide;Acc:NP_071600] ## {SimpF: oe = 0.66 -1 CpG} ========== block348893 [novel_randfoldOK] ========== #randfold block348893: 0.008 randfold human60p17_block348893: 0.035 randfold mouse61p17_block348893: 0.038 #forester human60p17_block348893: 0.311942 forester mouse61p17_block348893: 0.350601 #identity: 67.66 block348893 TTTCTGTGGACAATGGTGTT #rat_gr1165162_libT2S1 20 2 block348893 TTTCTGTGGACAATGGTGTT #rat_gr1165162_libT4S2 20 1 block348893 TTTCTGTGGACAATGGTG #rat_gr1165161_libT2S2 18 1 block348893 ATTACAATTCTGTAGTGAGAGACAAGGCATTTCTGTGGACAATGGTGTTAACAACACATGTAGCACTTAGTCACA-TCACAGAGTGCTCCAATATTACTCTTATTTGTAAT--------- human60p17 A-----------------------------TTCTGTGGAAAATGGTGTT-----------CAGGCCTAGTTCACATTTCCAGAG------------------------GAG--------- mouse61p17 AGAAGACTGCTTTAGAA-------------TTCTGTGGACAATGGAGGCTCCAAACAA--AGGTCCTTATG-----TTCCGGAGTGTGCA------------GTTTCTAATACACCAGCC * ********* ***** * * ** * * *** * block348893 (((((((......(((((.......((((.((((((((((...((((((.(((.....)))))))))..)))... .)))))))))))......))))).....))))))) 0.960 -28.62 # human60p17 . ((((.((((((...(((.. ...........))).)))))).)) )). 0.986 -12.22 # mouse61p17 ((.(((((((......( (((((.(((((...((((..((...... .)).)))).)) )))))))))..))) ))))))............ 0.998 -25.20 # #block348893 chromosome:14:39479069:39479178:-1 intergenic #human60p17 chromosome:9:137911825:137911974:-1 Same_strand|Intronic_coding|ENST00000389533|ENSG00000130559|protein_coding|Calmodulin-regulated spectrin-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5T5Y3] ## Same_strand|Intronic_non-coding|ENST00000312405|ENSG00000130559|protein_coding|Calmodulin-regulated spectrin-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5T5Y3] ## Same_strand|Boundary_non-coding|ENST00000320363|ENSG00000130559|protein_coding|Calmodulin-regulated spectrin-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5T5Y3] #mouse61p17 chromosome:18:40672567:40672654:-1 Opposite_strand|Intronic_coding|ENSMUST00000091927|ENSMUSG00000051401|protein_coding|potassium channel tetramerisation domain containing 16 Gene [Source:MGI Symbol;Acc:MGI:1914659] ========== block351277 [novel_randfoldOK] ========== #randfold block351277: 0.003 #forester #identity: 0.00 block351277 GTTCACACACACATTTGTGT #rat_gr657347_libT2S2 20 1 block351277 gtgtttctatgtatgtgtgttgaacatgtttgtatgtctgttcccatttgggggtgcactgtgggaGTTCACACACACATTTGTGTggttaatact ************************************************************************************************ block351277 (((((.(((..((((((((((((((...((..((.((.((..(((....)))..)).))))..)).))))).)))))))..))..)))..))))). 0.990 -30.80 # #block351277 chromosome:14:45222242:45222337:-1 intergenic ========== block351376 [novel_randfoldOK] ========== #randfold block351376: 0.004 #forester #identity: 0.00 block351376 GAAGGGTAGTGTTGGGATTTGAG #rat_gr487715_libT3S1 23 1 block351376 tggggagttgtaGAAGGGTAGTGTTGGGATTTGAGcttgtgcctatacatgctctatacctattctcagactcccttttcctcctt ************************************************************************************** block351376 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000030485 ENSRNOG00000027088 NP_001099476.1 block351376 .((((((....(((((((.(((.((((((...((((.((((....)))).)))).........)))))))))))))))).)))))) 0.980 -28.30 # #block351376 chromosome:14:45387497:45387582:-1 Same_strand|Intronic_coding|ENSRNOT00000030485|ENSRNOG00000027088 ## ENSRNOG00000027088|protein_coding|NP_001099476.1|ubiquitin-conjugating enzyme E2-25K [Source:RefSeq_peptide;Acc:NP_001099476] ========== block352030 [novel_randfoldOK] ========== #randfold block352030: 0.001 randfold mouseZ4p17_block352030: 0.001 #forester mouseZ4p17_block352030: 0.630651 #identity: 88.89 block352030 TCCTCCCCTTGCTAGGCGCC #rat_gr873805_libT4S1 20 1 block352030 ACTCTCTCTGCTCACCTCCTCCCCTTGCTAGGCGCCATTCCCCTGCGTTCCTGGAATGGAGCCCAGAGAGGGGAAAGGTGACAGAACAAGAGTC mouseZ4p17 -----------TCACCTCCTCCCCTTGCTGGGCGCCATTCCCCTGCATGCCTGGAACGCAGCCCAGCGAGGAGAGCGGTGACAGAACAAGAG-- ****************** **************** * ******* * ******* **** ** **************** block352030 (((((.((((.((((((..((((((..((.(((.(((((((...........))))))).))).))..)))))).))))))))))...))))). 1.000 -48.00 # mouseZ4p17 (((((..(((.(((((((((((((..((((...........)))).)).))))))))))).))).)))))........... 0.999 -37.80 # #block352030 chromosome:14:46579526:46579619:-1 intergenic ## {Repeats: dust 46579598 46579604 0 class=dust} #mouseZ4p17 chromosome:5:64758805:64758885:1 intergenic ## {Repeats: dust 0 class=dust} ========== block358261 [novel_randfoldOK] ========== #randfold block358261: 0.001 #forester #identity: 0.00 block358261 TAGAGACAGACTCTTGATCT #rat_gr761823_libT3S2 20 1 block358261 agtaaagatcaaggtttaagttactagatctgtggtctttcttatggcaactggagcagagtattatgtaaggatggcagtaatataggttTAGAGACAGACTCTTGATCTtaacta ********************************************************************************************************************* block358261 (((.(((((((((((((..(((.((((((((((((((.((((((((...(((.......)))....)))))))).))).....))))))))))).))))))).))))))))).))). 0.990 -35.90 # #block358261 chromosome:14:61551274:61551390:-1 intergenic ========== block361641 [novel_cloningOK] ========== #randfold block361641: 0.836 #forester #identity: 0.00 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT5S1 20 14 block361641 TTTAATGATGACTTCTGGT #rat_gr1154674_libT5S1 19 4 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT2S1 20 2 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT1S1 20 1 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT3S1 20 1 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT3S2 20 1 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT4S1 20 1 block361641 TTTAATGATGACTTCTGGTG #rat_gr1154675_libT5S2 20 1 block361641 TTTAATGATGACTTCTGGT #rat_gr1154674_libT2S1 19 1 block361641 TTTAATGATGACTTCTGGT #rat_gr1154674_libT4S1 19 1 block361641 TTTAATGATGACTTCTGGT #rat_gr1154674_libT5S2 19 1 block361641 gaggctttcccttatgttgctaactgaaggaatttcttaaagaattgaagacccccccccTTTAATGATGACTTCTGGTGccaattcacaatgctttt ************************************************************************************************** block361641 (((((..........((((...(((((((..(((..((((((.................)))))).)))..)))).)))..)))).......))))). 0.600 -13.56 # #block361641 chromosome:14:71291989:71292086:-1 intergenic ========== block362943 [novel_randfoldOK] ========== #randfold block362943: 0.002 randfold mouseZ12p17_block362943: 0.007 #forester mouseZ12p17_block362943: 0.303178 #identity: 77.92 block362943 CTCCACAGTAGACCTGACTAC #rat_gr421162_libT2S2 21 1 block362943 CTAAGTCCTTGTAGTGTCTCTCCTGGATTTTCACAC-AGACCCCATCTTGTGCATGAGACTCCACAGTAGACCTGACTACCTTCTGACTTA mouseZ12p17 -TAAGTTCTTCTAGTGTCGTTGTTGAGCTTTCACATGAGACGCCATCTC-TATGTGAAACTCCACAGTAGGCCTGACTAC----------- ***** *** ******* * ** ******* **** ****** * *** ************ ********* block362943 .((((((...(((((((((((..((((.(((((((( ((........)))))..))))).)))).)).))))...))))).....)))))) 1.000 -23.80 # mouseZ12p17 ..........(((.(((..(((.(((.((((((((((((.....)))) .))))))))))).)))...))))))..... 0.989 -22.60 # #block362943 chromosome:14:75418328:75418417:-1 intergenic #mouseZ12p17 chromosome:5:41092074:41092203:1 intergenic ========== block364515 [novel_randfoldOK] ========== #randfold block364515: 0.009 #forester #identity: 0.00 block364515 GTGGCAGGGTGCCTTCGCCTG #rat_gr650300_libT3S2 21 1 block364515 aaaagttcgactgtaaccggttcacatggcaaagccacccagtgggccctgcaccagcaggGTGGCAGGGTGCCTTCGCCTGacagcctaagttgggtatagttttagcttttg ****************************************************************************************************************** block364515 (((((((.(((((((.((((((..((.(((.(((.(((((.((..(((((((....))))))).)).))))).))).)))))..))))......)).)))))))..))))))). 0.630 -45.00 # #block364515 chromosome:14:79645899:79646012:-1 intergenic ========== block365282 [novel_randfoldOK] ========== #randfold block365282: 0.004 #forester #identity: 0.00 block365282 CTGCAGCTGCCTCCTCACCCAG #rat_gr441785_libT4S1 22 1 block365282 tggaaaaatgtgccccaagtgcaggcagggtgagggccagctcaacactgctcagttacagCTGCAGCTGCCTCCTCACCCAGcctgggctatggttactaggaaatctag *************************************************************************************************************** block365282 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000045068 ENSRNOG00000030568 Rgs12 block365282 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040215 ENSRNOG00000030568 Rgs12 block365282 ((((.....(((..((((((.(((((.(((((((((.(((((((...(((........))).)).)))))..))))))))).))))).))).))).))).......)))). 0.610 -43.80 # #block365282 chromosome:14:81395045:81395155:-1 Same_strand|Boundary_non-coding|ENSRNOT00000058198|ENSRNOG00000030568 ## Same_strand|Intronic_coding|ENSRNOT00000045068|ENSRNOG00000030568 ## ENSRNOG00000030568|protein_coding|Rgs12|Regulator of G-protein signaling 12 (RGS12). [Source:UniProtKB/Swiss-Prot;Acc:O08774] ========== block366828 [novel_randfoldOK] ========== #randfold block366828: 0.005 #forester #identity: 0.00 block366828 AGCATCGCAATGCACAGGGAG #rat_gr155938_libT5S2 21 1 block366828 aggcagatgtgcctgttacccgtgAGCATCGCAATGCACAGGGAGatttgtggatagggaacaagtaccagctgtggatgtgcagtgtgggtaacattaggcattggcgcctg ***************************************************************************************************************** block366828 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000026477 ENSRNOG00000019451 Smtn block366828 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000026481 ENSRNOG00000019451 Smtn block366828 ((((....(((((((((((((....((((.(((((.(((((((..((((((.........)))))).))..))))).)).))).))))))))))))...)))))....)))). 0.970 -42.80 # #block366828 chromosome:14:84176121:84176233:-1 Same_strand|Intronic_coding|ENSRNOT00000026481|ENSRNOG00000019451 ## Same_strand|Boundary_non-coding|ENSRNOT00000026345|ENSRNOG00000019451 ## ENSRNOG00000019451|protein_coding|Smtn|Smtn protein. [Source:UniProtKB/TrEMBL;Acc:Q63ZV4] ========== block369055 [novel_randfoldOK] ========== #randfold block369055: 0.001 #forester #identity: 0.00 block369055 TAAAGGTTTGTGTGGGTGGA #rat_gr703468_libT2S1 20 1 block369055 gagtccaggtTAAAGGTTTGTGTGGGTGGAagatggacagaggtgttagttgttttgtttaatttttgagacagggtctgtctatatagacctggctgtcctggagctc ************************************************************************************************************* block369055 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000011043 ENSRNOG00000008276 NP_001100709.1 block369055 (((((((((....(((((((((((((..((...((..(((((((..(((.....)))....)))))))...))...))..)))))))))))))......)))))).))) 0.410 -38.80 # #block369055 chromosome:14:87910781:87910889:-1 Opposite_strand|Intronic_coding|ENSRNOT00000011043|ENSRNOG00000008276 ## ENSRNOG00000008276|protein_coding|NP_001100709.1|adenylate cyclase 1 [Source:RefSeq_peptide;Acc:NP_001100709] ========== block379175 [novel_cloningOK] ========== #randfold block379175: 0.100 #forester #identity: 0.00 block379175 TTGCGGGAAGGGTAGCATGAGT #rat_gr1137165_libT1S1 22 3 block379175 TTGCGGGAAGGGTAGCATGAGT #rat_gr1137165_libT2S1 22 2 block379175 TTGCGGGAAGGGTAGCATGAGT #rat_gr1137165_libT1S2 22 1 block379175 TTGCGGGAAGGGTAGCATGAGTACC #rat_gr1137166_libT3S2 25 1 block379175 TGCGGGAAGGGTAGCATG #rat_gr970363_libT3S2 18 1 block379175 TGCGGGAAGGGTAGCATGA #rat_gr970364_libT1S2 19 1 block379175 TGCGGGAAGGGTAGCATGAG #rat_gr970365_libT1S2 20 1 block379175 TGCGGGAAGGGTAGCATGAG #rat_gr970365_libT2S1 20 1 block379175 TGCGGGAAGGGTAGCATGAG #rat_gr970365_libT3S2 20 1 block379175 TGCGGGAAGGGTAGCATGAGT #rat_gr970366_libT1S1 21 1 block379175 TGCGGGAAGGGTAGCATGAGT #rat_gr970366_libT2S2 21 1 block379175 TGCGGGAAGGGTAGCATGAGTACC #rat_gr970367_libT1S2 24 1 block379175 TGCGGGAAGGGTAGCATGAGTACC #rat_gr970367_libT2S2 24 1 block379175 GCGGGAAGGGTAGCATGAGTACC #rat_gr564498_libT1S2 23 1 block379175 ggctcaagtaagactcaaagcacaggatctgTTGCGGGAAGGGTAGCATGAGTACCtagaacctggactctgagcctcttccccacagggtaggtgtggcc ***************************************************************************************************** block379175 >>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> #ENSRNOT00000032056 ENSRNOG00000024112 Dgkq block379175 ((((...............((((....((((.((.(((((((((..((.((((.((........)))))))).))).))))))))))))....)))))))) 0.440 -34.46 # #block379175 chromosome:14:1606526:1606626:1 Same_strand|Intronic_coding|ENSRNOT00000032056|ENSRNOG00000024112 ## ENSRNOG00000024112|protein_coding|Dgkq|diacylglycerol kinase, theta Gene [Source:MGI (curated);Acc:Dgkq-001] ========== block379179 [novel_randfoldOK] ========== #randfold block379179: 0.003 #forester #identity: 0.00 block379179 TGCCTTGGGGCAAATGAGTG #rat_gr969413_libT4S2 20 1 block379179 aggcctgggctccctgtgtgtttaaccatgcattgccctctgtggcagagttaggcatgaagccgttgttactgccTGCCTTGGGGCAAATGAGTGttaagtacaggcagctctgcct ********************************************************************************************************************** block379179 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000032056 ENSRNOG00000024112 Dgkq block379179 ((((..(((((.((((((..(((((.(((.(((((((((....((((((((..(((.....)))......)))..)))))..))))))).)).)))))))))))))).))))).)))) 0.970 -49.20 # #block379179 chromosome:14:1609510:1609627:1 Same_strand|Intronic_coding|ENSRNOT00000032056|ENSRNOG00000024112 ## ENSRNOG00000024112|protein_coding|Dgkq|diacylglycerol kinase, theta Gene [Source:MGI (curated);Acc:Dgkq-001] ========== block379296 [novel_randfoldOK] ========== #randfold block379296: 0.008 #forester #identity: 0.00 block379296 GTAGAGCCTGTGGAGCAGGG #rat_gr629584_libT1S1 20 1 block379296 cagtgctgccctccGTAGAGCCTGTGGAGCAGGGgaagcacactacccttctcttgggtggcatctgcaaattccctttcctttcaagaggctactgctgagcaggctctctg ***************************************************************************************************************** block379296 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000000072 ENSRNOG00000000064 Atp5i block379296 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061705 ENSRNOG00000000064 Atp5i block379296 (((....((((((.(((((((((.(((((.((((((((((..((((((.......))))))....)))...)))))))...)))))..))))).)))).)))..)))...))) 0.620 -43.80 # #block379296 chromosome:14:1868089:1868201:1 Same_strand|Intronic_coding|ENSRNOT00000061705|ENSRNOG00000000064 ## ENSRNOG00000000064|protein_coding|Atp5i|ATP synthase subunit e, mitochondrial. [Source:UniProtKB/Swiss-Prot;Acc:P29419] ========== block380705 [novel_randfoldOK] ========== #randfold block380705: 0.009 #forester #identity: 0.00 block380705 GACACTGATGGGCAGTGTGGGGA #rat_gr492835_libT3S1 23 1 block380705 ttataGACACTGATGGGCAGTGTGGGGAttgcagggtcccttatagtggtctctgcaggtgtccgggctctgtcagacctatgac ************************************************************************************* block380705 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block380705 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block380705 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block380705 ----------------------------------------------------------------------------------------------- #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block380705 ----------------------------------------------------------------------------------------------- #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block380705 ((((((...(((((((..(((.((((.(((((((((.((((...)).)).))))))).)).)))).))))))))))..)))))). 1.000 -33.50 # #block380705 chromosome:14:4536333:4536417:1 Same_strand|Intronic_non-coding|ENSRNOT00000042632|ENSRNOG00000033121 ## Same_strand|Boundary_non-coding|ENSRNOT00000061428|ENSRNOG00000033121 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061382|ENSRNOG00000026588 ## Opposite_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block380776 [novel_randfoldOK] ========== #randfold block380776: 0.003 #forester #identity: 0.00 block380776 GACACTGATGGGCAGTGTGGGGA #rat_gr492835_libT3S1 23 1 block380776 atagggacattgtaGACACTGATGGGCAGTGTGGGGAtggtagggtcccatatactgctctccgcaggtgtcaggagagcatacagtggctctgtc ************************************************************************************************ block380776 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block380776 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block380776 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block380776 ---------------------------------------------------------------------------------------------------------- #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block380776 ---------------------------------------------------------------------------------------------------------- #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block380776 ---------------------------------------------------------------------------------------------------------- #ENSRNOT00000061377 ENSRNOG00000039950 block380776 ((((((.(((((((((((((...(((((((((((((((......))))).))))))))))......)))))).........))))))).)))))). 0.830 -40.30 # #block380776 chromosome:14:4582872:4582967:1 Same_strand|Intronic_non-coding|ENSRNOT00000042632|ENSRNOG00000033121 ## Same_strand|Boundary_non-coding|ENSRNOT00000061428|ENSRNOG00000033121 ## Opposite_strand|Intronic_coding|ENSRNOT00000061377|ENSRNOG00000039950 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061382|ENSRNOG00000026588 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000039950|protein_coding|| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block380779 [novel_randfoldOK] ========== #randfold block380779: 0.001 #forester #identity: 0.00 block380779 TAGACCAAAAGCCCTGGATCTGAG #rat_gr760942_libT5S1 24 1 block380779 ctgcctgaattcctctTAGACCAAAAGCCCTGGATCTGAGctactttggtgcgtgctcctaagtggggtcccagaggtagctcagaatcggggctatgcatggactttggtgctggcagc ************************************************************************************************************************ block380779 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block380779 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block380779 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block380779 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block380779 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block380779 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061377 ENSRNOG00000039950 block380779 (((((......((....((.(((..((((((((.(((((((((((((((.....(((((.....))))).)))))).))))))))).)))))))).....))).))..))....))))). 0.640 -54.00 # #block380779 chromosome:14:4585793:4585912:1 Same_strand|Intronic_non-coding|ENSRNOT00000042632|ENSRNOG00000033121 ## Same_strand|Boundary_non-coding|ENSRNOT00000061428|ENSRNOG00000033121 ## Opposite_strand|Intronic_coding|ENSRNOT00000061377|ENSRNOG00000039950 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061382|ENSRNOG00000026588 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000039950|protein_coding|| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block380844 [novel_randfoldOK] ========== #randfold block380844: 0.006 #forester #identity: 0.00 block380844 GACACTGATGGGCAGTGTGGGGA #rat_gr492835_libT3S1 23 1 block380844 atagggacattgtaGACACTGATGGGCAGTGTGGGGAtggtagggtccgatatactgctctctgcaggtgtcaggagagcatacagtggctctgtc ************************************************************************************************ block380844 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block380844 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block380844 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block380844 ---------------------------------------------------------------------------------------------------------- #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block380844 ---------------------------------------------------------------------------------------------------------- #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block380844 ((((((.(((((((((((((...((((((((((.((((......))))..))))))))))......)))))).........))))))).)))))). 0.930 -37.10 # #block380844 chromosome:14:4633705:4633800:1 Same_strand|Intronic_non-coding|ENSRNOT00000042632|ENSRNOG00000033121 ## Same_strand|Boundary_non-coding|ENSRNOT00000061428|ENSRNOG00000033121 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061382|ENSRNOG00000026588 ## Opposite_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block380847 [novel_randfoldOK] ========== #randfold block380847: 0.003 #forester #identity: 0.00 block380847 TAGACCAAAAGCCCTGGATCTGAG #rat_gr760942_libT5S1 24 1 block380847 ctgcctgaattcctctTAGACCAAAAGCCCTGGATCTGAGctactttggtgcgtgctcctaagtggggtcccagacacagctcagaatcggggctgtgcatggactttggtgctggcagc ************************************************************************************************************************ block380847 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 block380847 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 block380847 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 block380847 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061429 ENSRNOG00000033121 LOC501237 block380847 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061428 ENSRNOG00000033121 LOC501237 block380847 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 block380847 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 block380847 (((((......((....((.(((..((((((((.((((((((..(((((.....(((((.....))))).)))))...)))))))).)))))))).....))).))..))....))))). 0.880 -49.60 # #block380847 chromosome:14:4636449:4636568:1 Same_strand|Intronic_non-coding|ENSRNOT00000042632|ENSRNOG00000033121 ## Same_strand|Boundary_non-coding|ENSRNOT00000048684|ENSRNOG00000033121 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000061382|ENSRNOG00000026588 ## Opposite_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] ========== block381896 [novel_randfoldOK] ========== #randfold block381896: 0.001 #forester #identity: 0.00 block381896 GTGCCTCCCTCTGCCCTCACAAC #rat_gr647633_libT1S1 23 1 block381896 aatggaatcccgttttgggggggcggaggggggggacaaagcatctcttttGTGCCTCCCTCTGCCCTCACAACtcttttcgttc ************************************************************************************* block381896 (((((((....(((....(((((((((.((((((.((((((......)))))).)))))))))))))))..)))...))))))). 0.470 -38.60 # #block381896 chromosome:14:6630417:6630501:1 intergenic ========== block382552 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block382552: 0.002 #forester #identity: 0.00 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT3S1 18 15 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT3S2 18 10 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT5S1 18 5 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT2S2 18 3 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT1S1 18 2 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT2S1 18 2 block382552 TCAAAGTGGAATGAGTGC #rat_gr805474_libT3S1 18 1 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT4S1 18 1 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT4S2 18 1 block382552 CAAAGTGGAATGAGTGCT #rat_gr260089_libT5S2 18 1 block382552 gtagctcttttCAAAGTGGAATGAGTGCTgcctctaagttatgtctgcacacagaactccctggatgtctgttcagtctcaggagcagacatacatgtcagttgaaataagagctac ********************************************************************************************************************* block382552 ((((((((((((((..((..(((.(((((((..((.((......(((...(((((..((....))..))))).))).)).))..)))).))).)))..)).))))))..)))))))) 0.530 -39.30 # #block382552 chromosome:14:7829679:7829795:1 intergenic ========== block383651 [novel_randfoldOK] ========== #randfold block383651: 0.010 #forester #identity: 0.00 block383651 ATCCTGGCCTTGAGGAGTTAG #rat_gr221735_libT3S1 21 1 block383651 aaggttggagcttcagacattcatctgcATCCTGGCCTTGAGGAGTTAGtggcaacttctcctttgtagcgcctgaaggattcaccccatcctcttagaagcctgttccaactt ****************************************************************************************************************** block383651 .((((((((((((((((........((.((((((((((.((((((..(((....))).))))))...)).)))...))))).))........)))..)))))....)))))))) 0.530 -35.99 # #block383651 chromosome:14:10224415:10224528:1 intergenic ========== block384851 [novel_randfoldOK] ========== #randfold block384851: 0.001 randfold mouseZ2p18_block384851: 0.074 #forester mouseZ2p18_block384851: 0.538756 #identity: 94.94 block384851 GCTAAACAGATAATGGAGCCCAC #rat_gr566040_libT2S1 23 1 block384851 GAAATTTCCCACCAGGCTAAACAGATAATGGAGCCCACTGCCTTGTAGCTATGTCAGCGAGCAAAGCCCTTCCAAGTTGTCCTCCATTACTTTGTGCCTTACAGGAAATTTCT mouseZ2p18 ---------------GCTAAACAGATAATGGAGTCCACTGCCTTGTAGCTATGTCAGATAGCAAAGCCTTTCCAA---GTCCTCCATTACTTTGTGC---------------- ****************** *********************** ********* ****** ******************* block384851 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000000092 ENSRNOG00000000081 Antxr2 block384851 (((((((((....((((...(((((((((((((..((((((.((((.(((.....)))..)))).)).......)).))..)))))))).)))))))))....))))))))). 0.950 -36.51 # mouseZ2p18 .....(((((((((((((...(((........(((.(((......))).))).......) )).)))))))).))))).. 0.758 -18.26 # #block384851 chromosome:14:13107936:13108048:1 Same_strand|Intronic_coding|ENSRNOT00000000092|ENSRNOG00000000081 ## ENSRNOG00000000081|protein_coding|Antxr2|anthrax toxin receptor 2 Gene [Source:MGI Symbol;Acc:MGI:1919164] #mouseZ2p18 chromosome:5:98314979:98315131:-1 Same_strand|Exonic_non-coding|ENSMUST00000031281|ENSMUSG00000029338|protein_coding|anthrax toxin receptor 2 Gene [Source:MGI Symbol;Acc:MGI:1919164] ========== block386034 [novel_randfoldOK] ========== #randfold block386034: 0.010 #forester #identity: 0.00 block386034 CAAGCAACCTGACTGAAGCT #rat_gr268982_libT3S1 20 1 block386034 tttggaggcctttaaccagcttgttcaggttcccctgcctctttgtttcacttcttCAAGCAACCTGACTGAAGCTtccaag ********************************************************************************** block386034 .(((((((.(((((..(((.(((((((((....)))).....................))))).)))..)))))))))))). 0.450 -20.99 # #block386034 chromosome:14:16305914:16305995:1 intergenic ========== block387758 [novel_randfoldOK] ========== #randfold block387758: 0.001 #forester #identity: 0.00 block387758 TCTTGCACATCCTCACTCACAG #rat_gr913915_libT1S1 22 1 block387758 aggggatgaaaaccaaatacagtaagggtgtgagtgtgagtgcagagacagtcacgtgagtgctcTCTTGCACATCCTCACTCACAGgtttattgtgtactaaccctcccactg ****************************************************************************************************************** block387758 ((((((..........((((((((((..((((((((.(((((((.(((.((.(((....))))).)))))))).))..))))))))..))))))))))........)))).)). 0.610 -45.37 # #block387758 chromosome:14:19676748:19676861:1 intergenic ========== block388441 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block388441: 0.002 #forester #identity: 0.00 block388441 TTCACGATGCATATTTAG #rat_gr1111073_libT3S2 18 4 block388441 TTCACGATGCATATTTAG #rat_gr1111073_libT3S1 18 2 block388441 TTCACGATGCATATTTAGGTCC #rat_gr1111076_libT3S1 22 2 block388441 TTCACGATGCATATTTAGG #rat_gr1111074_libT3S1 19 1 block388441 TTCACGATGCATATTTAGGTC #rat_gr1111075_libT3S2 21 1 block388441 atcattgaagtacttgggttggaatgtatTTCACGATGCATATTTAGGTCCgttgaatactgatgggaccagatacgcatcctgaaaaatgctaccagcctgatctgtggtg **************************************************************************************************************** block388441 (((((.((.....(((((((((...((((((((.(((((.(((((.((((((((.......))))).)))))))).))))).))))..))))..))))))))))).))))). 1.000 -38.10 # #block388441 chromosome:14:21230741:21230852:1 intergenic ========== block393278 [novel_randfoldOK] ========== #randfold block393278: 0.001 randfold mouseZ8p18_block393278: 0.067 #forester mouseZ8p18_block393278: 0.548226 #identity: 87.72 block393278 AGGATCCTGAAGGAAATGAC #rat_gr174869_libT3S1 20 1 block393278 AGGATCCTGAAGGAAATGACTC #rat_gr174870_libT5S1 22 1 block393278 AGGATCCTGAAGGAAATGACTCA #rat_gr174871_libT1S1 23 1 block393278 AGGATCCTGAAGGAAATGACTCA #rat_gr174871_libT3S1 23 1 block393278 GGCTGGTTTGGCTCATTTCCTCAAGCTC-CTCTTTAATCAGCTAGAGGATCCTGAAGGAAATGACTCAAAACTCC mouseZ8p18 ---------GGCTCATTTCCTCGCGCCCTTTCTTTAATCGGCTGGAGGATCCTGGAGGAAATGACTC-------- ************* ** * ********* *** ********** ************ block393278 --------------------------------- --------------------------------------------------- #ENSRNOT00000003050 ENSRNOG00000002227 Kit block393278 ((....((((..(((((((((..((.(( ((((..........))))))..))..)))))))))..))))...)) 1.000 -24.70 # mouseZ8p18 ...((((((((((.((....(((((((......)))))))...))))))))))))... 0.209 -18.00 # #block393278 chromosome:14:34981517:34981590:1 Opposite_strand|Intronic_coding|ENSRNOT00000003050|ENSRNOG00000002227 ## ENSRNOG00000002227|protein_coding|Kit|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog [Source:RefSeq_peptide;Acc:NP_071600] #mouseZ8p18 chromosome:5:75974305:75974418:-1 Opposite_strand|Intronic_coding|ENSMUST00000005815|ENSMUSG00000005672|protein_coding|kit oncogene Gene [Source:MGI (curated);Acc:Kit-002] ========== block393982 [novel_randfoldOK] ========== #randfold block393982: 0.004 #forester #identity: 0.00 block393982 TCTGCCTGCATAAACTCACTC #rat_gr906486_libT1S1 21 1 block393982 tgtattagcgctctctctctctctctgtgtgtgtgtgtgtgcgcgtgtgcgcgcgtgcatatgcatgtgtgtaTCTGCCTGCATAAACTCACTCacgtattaagttaataagtgatacag ************************************************************************************************************************ block393982 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000002879 ENSRNOG00000002106 RGD1564808_predicted block393982 (((((...((((......((.....((((.(((.((.((((((((.((((((((((((....)))))))))))).)))..))))).)).))).)))).....))......))))))))). 0.690 -41.30 # #block393982 chromosome:14:36591794:36591913:1 Same_strand|Intronic_coding|ENSRNOT00000002879|ENSRNOG00000002106 ## ENSRNOG00000002106|protein_coding|RGD1564808_predicted| ========== block396649 [novel_randfoldOK] ========== #randfold block396649: 0.010 #forester #identity: 0.00 block396649 CTAGCTATTTGGTAAGATCAAAC #rat_gr413049_libT5S1 23 1 block396649 catcatgctttgttgacacaatgccagggtggtgggttcactgagaacctctacgagCTAGCTATTTGGTAAGATCAAACacagggcatgaatg ********************************************************************************************** block396649 ..((((((((((((((.....(((((.((((((.(((((...(((...)))...))))).)))))))))))...)))...)))))))))))... 0.930 -31.40 # #block396649 chromosome:14:43389177:43389270:1 intergenic ========== block398628 [novel_randfoldOK] ========== #randfold block398628: 0.002 randfold human178p18_block398628: 0.071 randfold mouseZ15p18_block398628: 0.001 #forester human178p18_block398628: 0.371964 forester mouseZ15p18_block398628: 0.947175 #identity: 79.47 block398628 CCAGCAGTGGGGAAAACCTC #rat_gr331888_libT4S2 20 1 block398628 GGCACACCAGCAGTGGGGAAAACCTCTTCCGAATTAATGGGCAGAGGATATCT-------------CAGCTGCTGATCACCCA human178p18 ------GCAGCAGTGGGGAAA----------AGTGTACATGTGGAAAATTTTTTGTATAGTAAGGCTAGCTGGTGA------- mouseZ15p18 ------CCAGCAGTGGGGAAAACCTCTTCCGAATTAACGGGCAGAGGATCTCT-------------CAGCTGCTGA------- ************** * * * * ** ** * * ***** *** block398628 ((.....(((((((.((((...(((((((((......)))).)))))...))) ).))))))).....)). 1.000 -27.00 # human178p18 .((.((((..((... ....((((((..(((....)))..))).)))...)).)))).)). 0.997 -11.60 # mouseZ15p18 .(((((((.((((...(((((((((......)))).)))))...))) ).))))))). 1.000 -28.20 # #block398628 chromosome:14:47035045:47035114:1 intergenic #human178p18 chromosome:14:39594505:39594614:1 intergenic #mouseZ15p18 chromosome:5:64198444:64198553:1 Same_strand|Exonic_coding|ENSMUST00000053436|ENSMUSG00000043636|protein_coding|RIKEN cDNA 3110047P20 gene Gene [Source:MGI Symbol;Acc:MGI:1920464] ========== block399106 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block399106: 0.005 randfold mouseZ19p18_block399106: 0.011 #forester mouseZ19p18_block399106: 0.441224 #identity: 87.50 block399106 GTCCTGCACTCATGAGCC #rat_gr638613_libT1S2 18 4 block399106 GTCCTGCACTCATGAGCC #rat_gr638613_libT4S1 18 2 block399106 GTCCTGCACTCATGAGCC #rat_gr638613_libT1S1 18 1 block399106 GTCCTGCACTCATGAGCC #rat_gr638613_libT4S2 18 1 block399106 GTCCTGCACTCATGAGCC #rat_gr638613_libT5S1 18 1 block399106 GTCCTGCACTCATGAGCCA #rat_gr638614_libT4S2 19 1 block399106 TGGCACTGACGTGTGTTAAATGCGAAACTCGTAGGTTCCTGGTGACATCAGATAGGACACAGGAATCACTCGTGTCCTGCACTCATGAGCCACCCATGCCACGCATGTAACACAAAGGCC mouseZ19p18 -------------------------------------------GGCATCAGACAGGACACACGGGACACTCGTGTCCTGCACTCATGAGCC----------------------------- * ******* ******** * ************************* block399106 .(((.((....(((((((.(((((......((.(((((.(((((........((((((((((......)).))))))))))).)).)))))))........))))).))))))).))))) 0.680 -41.64 # mouseZ19p18 (((.(((((((((((((..((....)).))))))))...)).)))))) 0.999 -18.80 # #block399106 chromosome:14:48125621:48125740:1 intergenic #mouseZ19p18 chromosome:7:135302218:135302377:-1 Opposite_strand|Intronic_coding|ENSMUST00000106237|ENSMUSG00000070369|protein_coding|integrin, alpha D Gene [Source:MGI Symbol;Acc:MGI:3578624] ## Opposite_strand|Boundary_non-coding|ENSMUST00000033051|ENSMUSG00000070369|protein_coding|integrin, alpha D Gene [Source:MGI Symbol;Acc:MGI:3578624] ========== block403402 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block403402: 0.004 #forester #identity: 0.00 block403402 TTTGTAGGGATCTAACCA #rat_gr1172678_libT1S1 18 5 block403402 TTTGTAGGGATCTAACCA #rat_gr1172678_libT5S1 18 4 block403402 TTTGTAGGGATCTAACCA #rat_gr1172678_libT2S2 18 1 block403402 TTTGTAGGGATCTAACCA #rat_gr1172678_libT3S1 18 1 block403402 TTTGTAGGGATCTAACCA #rat_gr1172678_libT4S2 18 1 block403402 TTTGTAGGGATCTAACCAA #rat_gr1172679_libT1S1 19 1 block403402 TTTGTAGGGATCTAACCAA #rat_gr1172679_libT5S1 19 1 block403402 gaacatccattTTTGTAGGGATCTAACCAagagtgtggtagttaattaaaacccagtcttatgtggcttagatcctttagattgaatgtca ******************************************************************************************* block403402 ((.(((.((.(((...((((((((((((((((.((.(((...........))))).)))....))).)))))))))).))).)).))))). 1.000 -26.00 # #block403402 chromosome:14:58267688:58267778:1 intergenic ========== block404756 [novel_randfoldOK] ========== #randfold block404756: 0.002 #forester #identity: 0.00 block404756 TTTTCCCCAAAGGCCTCCTT #rat_gr1182575_libT2S1 20 1 block404756 ctggccctcgttttcaaagcccagaggaagccttttggaagcatcattggtctttctaaatgtattcTTTTCCCCAAAGGCCTCCTTcatgcttttaaaagctggagtcag *************************************************************************************************************** block404756 (((((((..(((((.(((((...(((((.((((((.((((((((..((((.....))))))))......))))..)))))).)))))...)))))..))))).)).))))) 1.000 -33.40 # #block404756 chromosome:14:62235572:62235682:1 intergenic ========== block408224 [novel_randfoldOK] ========== #randfold block408224: 0.001 #forester #identity: 0.00 block408224 GGTCTTTTATGTCATAGTGAC #rat_gr620597_libT3S1 21 1 block408224 ccagttgtccatgctgagttgtgagttccatctaggtgactgtgaaataaatgaacctcggGGTCTTTTATGTCATAGTGACgaaggaggaaagagcatcagcatatcagctagg ******************************************************************************************************************* block408224 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000004274 ENSRNOG00000003174 RGD1309656_predicted block408224 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000058788 ENSRNOG00000003174 RGD1309656_predicted block408224 (((((((...(((((((..(((...((((..((..((.(((((((.(((((.((.((....)))).))))).))))))).))..))..))))...))))))))))..))))).)) 1.000 -42.30 # #block408224 chromosome:14:72042069:72042183:1 Same_strand|Intronic_coding|ENSRNOT00000058788|ENSRNOG00000003174 ## ENSRNOG00000003174|protein_coding|RGD1309656_predicted| ========== block412512 [novel_randfoldOK] ========== #randfold block412512: 0.010 #forester #identity: 0.00 block412512 CTGAGGATACTTAGTAACTA #rat_gr439263_libT2S1 20 1 block412512 ctttccagagaagcaCTGAGGATACTTAGTAACTAccaagtagctgaggccccaagggacttggaagatacctgaagttctttctcattctaacactggagaga ******************************************************************************************************** block412512 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000023904 ENSRNOG00000017548 NP_001100698.1 block412512 ((((((((((((....((((((.((((.(((.((.((((((..((.........))..)))))).)).)))...))))...))))))))))....)))))))). 0.420 -31.70 # #block412512 chromosome:14:82797238:82797341:1 Same_strand|Intronic_non-coding|ENSRNOT00000023904|ENSRNOG00000017548 ## Same_strand|Boundary_non-coding|ENSRNOT00000017569|ENSRNOG00000017548 ## ENSRNOG00000017548|protein_coding|NP_001100698.1| ========== block413685 [novel_randfoldOK] ========== #randfold block413685: 0.006 #forester #identity: 0.00 block413685 TAGTCTGCCCTCACCCCCCAC #rat_gr785925_libT3S1 21 1 block413685 acgtggttgccggtgcctgtgagggtgggggctggcgagctggaactttgctatgcTAGTCTGCCCTCACCCCCCACaaccttctcatgggctcccagta **************************************************************************************************** block413685 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000008788 ENSRNOG00000006394 Tbc1d10a block413685 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000035591 ENSRNOG00000024390 Osm block413685 ((.(((..(((.(((..((((.((((((((((.(((.((((((.......))).))).))).))))))))))..)))).......))).)))..))))). 1.000 -45.60 # #block413685 chromosome:14:84858063:84858162:1 Same_strand|Intronic_non-coding|ENSRNOT00000008788|ENSRNOG00000006394 ## Same_strand|Intronic_coding|ENSRNOT00000035591|ENSRNOG00000024390 ## ENSRNOG00000024390|protein_coding|Osm|oncostatin M [Source:RefSeq_peptide;Acc:NP_001006962] ## ENSRNOG00000006394|protein_coding|Tbc1d10a|TBC1 domain family, member 10a [Source:RefSeq_peptide;Acc:NP_001015022] ========== block415779 [novel_randfoldOK] ========== #randfold block415779: 0.001 #forester #identity: 0.00 block415779 CCCGGATGGAGAGCTGCTCTCA #rat_gr357251_libT1S1 22 1 block415779 cagagtactctctatagcCCCGGATGGAGAGCTGCTCTCAgaggtgctgaggcagctgtctgtccggcttccatgtatcactg *********************************************************************************** block415779 --------------------------------------------------------------------------------------------- #ENSRNOT00000012555 ENSRNOG00000025695 RGD1564930_predicted block415779 --------------------------------------------------------------------------------------------- #ENSRNOT00000012661 ENSRNOG00000025695 RGD1564930_predicted block415779 (((.((((.......((((..(((((((.((((((.(((((.....))))))))))).))))))))))).....))))..))) 0.430 -37.90 # #block415779 chromosome:14:89032818:89032900:1 Opposite_strand|Intronic_coding|ENSRNOT00000012661|ENSRNOG00000025695 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000012555|ENSRNOG00000025695 ## ENSRNOG00000025695|protein_coding|RGD1564930_predicted| ========== block418805 [novel_randfoldOK] ========== #randfold block418805: 0.001 randfold mouseZ1p19_block418805: 0.003 #forester mouseZ1p19_block418805: 0.407091 #identity: 84.93 block418805 CAGCTCCTTTTTGACTTCCTCC #rat_gr295534_libT1S1 22 1 block418805 GCAGGTCACGGCAAAACAGCCGGAAGTCACTAGGGTTGTTTCCAAAGTATGTCTGAGCTTCTCTCAGCCTCTGCAGCTCCTTTTTGACTTCCTCCTGTCTTGCCTCCCAAGTGGCCTGTT mouseZ1p19 ---------------------GGAGGTCACTAGGGTTGGCTGTGAAGTACG-CTGAGCTTCCCTCAGCCTCTGCAGCTCCTCTTTGATGTCCTCC------------------------- *** ************* * ***** * ********* ******************* ***** ****** block418805 ((((((((((((((.((((..((((((((..((((((((......((.....(((((.....)))))...))))))).)))...))))))))..)))).)))))......))))))))). 0.850 -49.40 # mouseZ1p19 (((((.((.(((((..((((((..((...( (((((.....))))))))..))))))...))))).)).))))) 1.000 -31.60 # #block418805 chromosome:14:98000797:98000916:1 intergenic #mouseZ1p19 chromosome:11:17046719:17046878:1 intergenic ========== block419476 [novel_randfoldOK] ========== #randfold block419476: 0.001 randfold mouse5p19_block419476: 0.056 #forester mouse5p19_block419476: 0.496694 #identity: 73.81 block419476 AGTCAGGTCCTGCATCCTCA #rat_gr196596_libT1S2 20 1 block419476 GCAGTTGCTCTGTGCCTTAGAGGAGCAGAGCCTGAATGCACAGCAGTCAGGTCCTGCATCCTCACACGGGCTGGAATCAACAGCA mouse5p19 ------------------AGAGAGGCAAGCCCTGTGGGT----CGGTCAGGTCCTGCCTCCTCA--------------------- **** *** **** * * ************ ****** block419476 ----------------------------------------------------------------------------------------------- #ENSRNOT00000006151 ENSRNOG00000004606 LOC686117 block419476 ----------------------------------------------------------------------------------------------- #ENSRNOT00000006157 ENSRNOG00000004606 LOC686117 block419476 ((.((((.((((.((((..(((((((((..(((((.(((...))).)))))..)))).)))))....))))))))..)))).)). 0.990 -39.90 # mouse5p19 .((((((((...((((..... ....))))...)))))).)). 0.881 -15.80 # #block419476 chromosome:14:99725396:99725480:1 Opposite_strand|Intronic_coding|ENSRNOT00000006151|ENSRNOG00000004606 ## ENSRNOG00000004606|protein_coding|LOC686117| #mouse5p19 chromosome:14:119436672:119436796:1 Opposite_strand|Intronic_coding|ENSMUST00000110726|ENSMUSG00000042104|protein_coding|UDP-glucose ceramide glucosyltransferase-like 2 Gene [Source:MGI Symbol;Acc:MGI:1913685] ## Opposite_strand|Boundary_non-coding|ENSMUST00000022732|ENSMUSG00000042104|protein_coding|UDP-glucose ceramide glucosyltransferase-like 2 Gene [Source:MGI Symbol;Acc:MGI:1913685] ========== block421860 [novel_cloningOK] ========== #randfold block421860: 0.339 randfold mouseZ6p19_block421860: 0.002 #forester mouseZ6p19_block421860: 0.688662 #identity: 91.38 block421860 CCCGCGGCTGTCTCCACCTTC #rat_gr356866_libT1S1 21 4 block421860 CCCGCGGCTGTCTCCACCT #rat_gr356865_libT1S1 19 2 block421860 CCCGCGGCTGTCTCCACCTTC #rat_gr356866_libT1S2 21 1 block421860 CCCGCGGCTGTCTCCACCTTC #rat_gr356866_libT3S2 21 1 block421860 CCCGCGGCTGTCTCCACCTTCA #rat_gr356867_libT1S1 22 1 block421860 CCCGCGGCTGTCTCCACCTTCA #rat_gr356867_libT1S2 22 1 block421860 CGCGCCCTGGGCTGTTCCATTCTCACGAAGCCAGGTGGGGAGCGAGCCGCG----TGCCGGGATCCGCTGACCCGCGGCTGTCTCCACCTTCAAAGTACCCGAATGACGGCAAAGTCCACCGCT mouseZ6p19 ------------------------------CCAGGTGGGGAGCGAGCCGCGGCGTTGCCAGCATCTGCTGACCCGCGGCCGTCTCCACCCTC-------------------------------- ********************* **** * *** ************* ********* ** block421860 .(((...(((((((((.(((((..((......((((((((.((.((((((( ...(((......)))...))))))))))))))))).....))....)))))..))))..))))).))). 0.800 -44.00 # mouseZ6p19 ...((((((((.((.(((((((.((...((((....)))))))))))))))))))))))... 1.000 -38.20 # #block421860 chromosome:14:103989720:103989839:1 intergenic ## {SimpF: oe = 0.94 1 CpG} #mouseZ6p19 chromosome:11:23205980:23206139:1 intergenic ## {SimpF: oe = 0.98 1 CpG} ========== block422081 [novel_randfoldOK] ========== #randfold block422081: 0.007 #forester #identity: 0.00 block422081 CTTCGCTGAGCCTGCTCTTC #rat_gr462712_libT1S2 20 1 block422081 ccaatgagtgacgagctcctgtgggcgggtgggtgcgggcccggccagagcgcagcccagcgCTTCGCTGAGCCTGCTCTTCaccctgccctctctgcctcttcctctcaggc ***************************************************************************************************************** block422081 ((...(((.((.((((......(((((((((((.((((((.((((..((((((......)))))).)))).)))))).)).))))).)))).....)).)).)))))...)). 1.000 -55.60 # #block422081 chromosome:14:104536222:104536334:1 intergenic ========== block425010 [novel_randfoldOK] ========== #randfold block425010: 0.003 #forester #identity: 0.00 block425010 GAGTTTGTGAAGGTAGAGAAAA #rat_gr518392_libT4S2 22 1 block425010 ttagttctcaatttcttgcctaacatatgctctgtatcaccacagaaacaaaacagatataaaggagagtttagtggcaGAGTTTGTGAAGGTAGAGAAAAgcaagagcta *************************************************************************************************************** block425010 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000009500 ENSRNOG00000006609 Psme4 block425010 .(((((((...((((((((((..((((.((((((.....((((..((((...................)))).)))))))))).)))).))))).)))))....))))))) 0.980 -29.21 # #block425010 chromosome:14:111971684:111971794:1 Same_strand|Intronic_coding|ENSRNOT00000009500|ENSRNOG00000006609 ## ENSRNOG00000006609|protein_coding|Psme4|Psme4 protein. [Source:UniProtKB/TrEMBL;Acc:Q5EAP2] ========== block425487 [novel_cloningHIGH] ========== #randfold block425487: 0.024 randfold mouseZ12p19_block425487: 0.195 #forester mouseZ12p19_block425487: 0.668666 #identity: 85.29 block425487 TCAGCACTAAAAACCAGTGA #rat_gr817608_libT5S1 20 63 block425487 CTCAGCACTAAAAACCAGTGA #rat_gr418818_libT5S1 21 23 block425487 CAGCACTAAAAACCAGTGA #rat_gr291311_libT5S1 19 14 block425487 TCAGCACTAAAAACCAGTGA #rat_gr817608_libT1S2 20 3 block425487 CTCAGCACTAAAAACCAGTGA #rat_gr418818_libT4S2 21 3 block425487 AGCTCAGCACTAAAAACCAGTGA #rat_gr164181_libT5S1 23 3 block425487 CTCAGCACTAAAAACCAGTGA #rat_gr418818_libT2S2 21 2 block425487 AAAAACCAGTGATTAAACC #rat_gr2364_libT5S1 19 1 block425487 CTAAAAACCAGTGATTAAAC #rat_gr406640_libT5S1 20 1 block425487 TCAGCACTAAAAACCAGTGATTAA #rat_gr817609_libT5S1 24 1 block425487 CTCAGCACTAAAAACCAGTGATTAA #rat_gr418819_libT5S1 25 1 block425487 GCACTAAAAACCAGTGATT #rat_gr530760_libT1S1 19 1 block425487 GCACTAAAAACCAGTGATT #rat_gr530760_libT1S2 19 1 block425487 GCACTAAAAACCAGTGATT #rat_gr530760_libT5S1 19 1 block425487 TCAGCACTAAAAACCAGTGA #rat_gr817608_libT1S1 20 1 block425487 TCAGCACTAAAAACCAGTGA #rat_gr817608_libT3S2 20 1 block425487 TCAGCACTAAAAACCAGTGA #rat_gr817608_libT4S1 20 1 block425487 CTCAGCACTAAAAACCAGTGA #rat_gr418818_libT1S1 21 1 block425487 CTCAGCACTAAAAACCAGTGA #rat_gr418818_libT3S2 21 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT1S1 19 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT2S1 19 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT4S1 19 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT4S2 19 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT5S1 19 1 block425487 TCAGCACTAAAAACCAGTG #rat_gr817607_libT5S2 19 1 block425487 CTCAGCACTAAAAACCAGTG #rat_gr418817_libT5S1 20 1 block425487 AGAAAGCTCAGCACTAAAAACCAGTGATTAAACCAGAGAAATCATTGGATGATTTGGTCCAAACTGCTATGAAGTTTTCT mouseZ12p19 ------CTCAGCACCAAACCCCAGTGGTTAAACTAGGAAGATCATTGGATGATTTGGTCCAAGTTGCTATGAAG------ ******** *** ****** ****** ** * ********************** ********** block425487 ((((((((((((((((((..(((((((((..........)))))))))....)))))).......)))..)).))))))) 0.480 -18.01 # mouseZ12p19 ..((((((((((..(((((((((..........)))))))))....))))))....))))........ 0.583 -15.00 # #block425487 chromosome:15:223857:223936:-1 intergenic #mouseZ12p19 chromosome:14:24935147:24935266:1 intergenic ========== block425626 [novel_randfoldOK] ========== #randfold block425626: 0.008 #forester #identity: 0.00 block425626 TAGAGACCAGGCTATGCTCA #rat_gr761849_libT5S1 20 3 block425626 gccatacctgaaactgtggcaatctgcctcaatcttgttttgtacacacacataTAGAGACCAGGCTATGCTCAtagtcagatcccctcctatggc ************************************************************************************************ block425626 ((((((.((((..((((((((....((((...((((....(((......)))....))))..))))..))).))))))))).........)))))) 0.870 -25.10 # #block425626 chromosome:15:232206:232301:-1 intergenic ========== block425965 [novel_cloningOK] ========== #randfold block425965: 0.049 #forester #identity: 0.00 block425965 TATCCTTTTTGAACTTGGCT #rat_gr794769_libT5S1 20 3 block425965 TCCTTTTTGAACTTGGCTTGA #rat_gr886856_libT5S1 21 2 block425965 TATCCTTTTTGAACTTGGCTT #rat_gr794770_libT5S1 21 2 block425965 GAATATCCTTTTTGAACTTG #rat_gr489129_libT5S1 20 2 block425965 TGAACTTGGCTTGAACGCACAGA #rat_gr926152_libT2S2 23 1 block425965 TTGAACTTGGCTTGAACG #rat_gr1131710_libT5S1 18 1 block425965 TATCCTTTTTGAACTTGGCTTGAAC #rat_gr794771_libT5S1 25 1 block425965 TCCTTTTTGAACTTGGCTTG #rat_gr886855_libT5S1 20 1 block425965 TATCCTTTTTGAACTTGGC #rat_gr794768_libT4S1 19 1 block425965 TATCCTTTTTGAACTTGGC #rat_gr794768_libT4S2 19 1 block425965 tgtgtgtatgtgtgtgtgtgagttttaatttctaccactaaagtgtattttggggggattgtgtgcttcaGAATATCCTTTTTGAACTTGGCTTGAACGCACAGAatacag *************************************************************************************************************** block425965 (((((...(((((((...((((((.....(((.......((((..((((((((((..........))))))))))..))))..)))...)))))).)))))))..))))). 0.500 -28.00 # #block425965 chromosome:15:254248:254358:-1 intergenic ========== block426703 [novel_randfoldOK] ========== #randfold block426703: 0.001 #forester #identity: 0.00 block426703 TACACATTAGAACCTCAGTCTGA #rat_gr742195_libT5S2 23 1 block426703 ttccctacagTACACATTAGAACCTCAGTCTGAtggagctatcctgaagtttgttttgcaatcttttcgatccttgaatgctctgtcagctggctttctaggtgtgttcactgagtggga ************************************************************************************************************************ block426703 .((((..(((((((((((((((..((((.((((((((((.(((..((((.(((.....))).))))..)))........))))))))))))))..)))))).)))))..))))...)))) 0.690 -43.60 # #block426703 chromosome:15:2326964:2327083:-1 intergenic ========== block429993 [novel_randfoldOK] ========== #randfold block429993: 0.001 #forester #identity: 0.00 block429993 AACTGAGGGTTGATCATTTCGT #rat_gr38679_libT2S1 22 1 block429993 cagaacctatctgatcacactgaggaaaAACTGAGGGTTGATCATTTCGTttattaatgaaactgaccaggaaatgatcaagcctcaggctttcctcagtgtgatggacagatggattct ************************************************************************************************************************ block429993 ---------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000046879 ENSRNOG00000032690 LOC683661 block429993 .((((.((((((((((((((((((((((..((((((.((((((((((((((..((.....))..)))...))))))))))).))))))..)))))))))))))))...))))))).)))) 0.870 -63.20 # #block429993 chromosome:15:8747887:8748006:-1 Opposite_strand|Intronic_coding|ENSRNOT00000046879|ENSRNOG00000032690 ## ENSRNOG00000032690|protein_coding|LOC683661|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) [Source:RefSeq_peptide;Acc:NP_001101841] ========== block431963 [novel_randfoldOK] ========== #randfold block431963: 0.001 #forester #identity: 0.00 block431963 CAAGGATGGGAGAAAAAAGGAG #rat_gr270102_libT3S2 22 1 block431963 gcaagactCAAGGATGGGAGAAAAAAGGAGtctgaacgcagatgactgcattagttcctgcttttcttcctccccacagtctctgc ************************************************************************************** block431963 ------------------------------------------------------------------------------------------------ #ENSRNOT00000061228 ENSRNOG00000008570 Cadps block431963 ------------------------------------------------------------------------------------------------ #ENSRNOT00000012169 ENSRNOG00000008570 Cadps block431963 ------------------------------------------------------------------------------------------------ #ENSRNOT00000012153 ENSRNOG00000008570 Cadps block431963 ((((((((...(((.(((((((((.(((((.((((..((((....)))).)))))))))..))))))))))))....))))).))) 1.000 -34.80 # #block431963 chromosome:15:14268284:14268369:-1 Opposite_strand|Intronic_coding|ENSRNOT00000012169|ENSRNOG00000008570 ## ENSRNOG00000008570|protein_coding|Cadps|Calcium-dependent secretion activator 1 (Calcium-dependent activator protein for secretion 1) (CAPS-1) (rCAPS). [Source:UniProtKB/Swiss-Prot;Acc:Q62717] ========== block433653 [novel_randfoldOK] ========== #randfold block433653: 0.006 #forester #identity: 0.00 block433653 CCTGAGAGACTGCCAGAGAG #rat_gr377806_libT3S1 20 1 block433653 tccacaccagatcctgtgggttctgtggctttgctgagtcttgaaaagaagaaaggaatcattcaccatggcccttCCTGAGAGACTGCCAGAGAGccctgggatcaaaatgga ****************************************************************************************************************** block433653 ((((.....(((((((.(((((((.((((.......((((((.......((.((((..((((.....)))).)))).))..)))))))))).))))))))))))))....)))) 0.930 -40.71 # #block433653 chromosome:15:18844014:18844127:-1 intergenic ========== block435912 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block435912: 0.001 #forester #identity: 0.00 block435912 TGGAGTGTGACAGCTGTAC #rat_gr1002978_libT2S1 19 6 block435912 TGGAGTGTGACAGCTGTA #rat_gr1002977_libT2S1 18 5 block435912 TGGAGTGTGACAGCTGTA #rat_gr1002977_libT2S2 18 5 block435912 TGGAGTGTGACAGCTGTAC #rat_gr1002978_libT2S2 19 3 block435912 TGGAGTGTGACAGCTGTACGT #rat_gr1002980_libT2S1 21 2 block435912 TGGAGTGTGACAGCTGTACGTTT #rat_gr1002981_libT2S2 23 1 block435912 TGGAGTGTGACAGCTGTACG #rat_gr1002979_libT2S2 20 1 block435912 tgtgtattgtgagattaaccgtgttgacgtgagctgccattccatacagttaagctggTGGAGTGTGACAGCTGTACGTttctaattaaacttataaccccgcac ********************************************************************************************************* block435912 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000040505 ENSRNOG00000010721 Dlg7_predicted block435912 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000015553 ENSRNOG00000010721 Dlg7_predicted block435912 ((((..(((((((.((((...((..(((((((((((.((((((((.(((.....)))))))))))...))))).))))))..)).)))).)))))))...)))). 1.000 -34.50 # #block435912 chromosome:15:23346938:23347042:-1 Same_strand|Intronic_coding|ENSRNOT00000015553|ENSRNOG00000010721 ## ENSRNOG00000010721|protein_coding|Dlg7_predicted| ========== block441195 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block441195: 0.005 #forester #identity: 0.00 block441195 GTAAGGCATTCAGTGTGCAG #rat_gr627688_libT5S2 20 1 block441195 GTAAGGCATTCAGTGTGCAGagcctgaactataagccagtggtaagggtaccactgtagcctccgttctaaatctgcctccccattttgcctta ********************************************************************************************** block441195 >>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> #ENSRNOT00000026279 ENSRNOG00000019246 Psme2 block441195 .(((((((...((((.(((((....((((.....((((((((((....))))))))..))....))))....))))).....)))).))))))) 1.000 -31.50 # #block441195 chromosome:15:33725464:33725557:-1 Same_strand|Boundary_coding|ENSRNOT00000026279|ENSRNOG00000019246 ## ENSRNOG00000019246|protein_coding|Psme2|Proteasome activator complex subunit 2 (Proteasome activator 28 subunit beta) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex subunit beta) (REG-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q63798] ========== block442794 [novel_randfoldOK] ========== #randfold block442794: 0.005 randfold mouseZ35p19_block442794: 0.194 #forester mouseZ35p19_block442794: 0.841249 #identity: 96.97 block442794 CGTGTTATTTACAGCGCTCTGACA #rat_gr405737_libT5S2 24 2 block442794 ATGGCATGTTCTG--GTCTGCTGTGCTTGTATTGTGACTTACAGTATTCTTGCTATTTTGTAGTAATGCCGTGTTATTTACAGCGCTCTGACATAGTTTCATGTGGT mouseZ35p19 ----CATATTCTGAAGTCTGCTGTGCTTGTATTGTGACTTACAGTATTCTCGCTATTTTGTAGTAATGCCGTGTTATTTACAGCGCTCTGACATAGTTTGATGTG-- *** ***** *********************************** ************************************************ ***** block442794 ((.(((((..((( (((....((((.((((..(((((..((.(((((.((((......)))).))))).))))))).))))))))...))).)))...))))).)) 1.000 -30.30 # mouseZ35p19 (((((((((..(((....((((.((((..(((((..((.(((((((.((......)))).))))).))))))).))))))))...))).)))...)))))) 0.989 -21.80 # #block442794 chromosome:15:36720110:36720214:-1 intergenic #mouseZ35p19 chromosome:14:58308602:58308702:-1 Same_strand|Boundary_non-coding|ENSMUST00000077981|ENSMUSG00000021959|protein_coding|large tumor suppressor 2 Gene [Source:MGI Symbol;Acc:MGI:1354386] ## Same_strand|Exonic_non-coding|ENSMUST00000022531|ENSMUSG00000021959|protein_coding|large tumor suppressor 2 Gene [Source:MGI Symbol;Acc:MGI:1354386] ========== block443013 [novel_randfoldOK] ========== #randfold block443013: 0.002 #forester #identity: 0.00 block443013 GTACTAGGGCTAGAAGCCAGGG #rat_gr629035_libT3S2 22 1 block443013 GTACTAGGGCTAGAAGCCAG #rat_gr629034_libT3S2 20 1 block443013 aggaccctcaGTACTAGGGCTAGAAGCCAGGGctgcctggaacactaggtgtaagctctgtacctactgcactgcacctagccctgagagacct ********************************************************************************************** block443013 -------------------------------------------------------------------------------------------------------- #ENSRNOT00000015367 ENSRNOG00000011471 Fgf9 block443013 (((...(((((..((((((((((.((.(((((((((((((....))))))...)))))))...)).)))....)).)))))..)))))...))) 0.880 -36.20 # #block443013 chromosome:15:37144109:37144202:-1 Opposite_strand|Intronic_coding|ENSRNOT00000015367|ENSRNOG00000011471 ## ENSRNOG00000011471|protein_coding|Fgf9|Glia-activating factor precursor (GAF) (Fibroblast growth factor 9) (FGF-9) (HBGF-9). [Source:UniProtKB/Swiss-Prot;Acc:P36364] ========== block448476 [novel_randfoldOK] ========== #randfold block448476: 0.001 randfold mouseZ37p19_block448476: 0.006 #forester mouseZ37p19_block448476: 0.809504 #identity: 93.48 block448476 CCACCACTGTCTACAGGAAG #rat_gr327793_libT1S2 20 1 block448476 TGAGTCCTCTGTAGGCAGGAATGCAGCCATGTGCCAGGAGGACACTGGGATACAGTGCATCTCCCCTGCCACATGGCCACCACTGTCTACAGGAAGGTCTCA mouseZ37p19 ----TCCTCTGTAGGCAGGAATGCAGCCGGGTGCCAGGAGAACACTGGGGTACAGTGCATCTACCCTGCCACATGGCCACCACTGTCTGCAGGAAG------ ************************ ********** ******** ************ ************************* ******* block448476 ---------------------------------------------------------------------------------------------------------------- #ENSRNOT00000022469 ENSRNOG00000016758 Loxl2 block448476 ---------------------------------------------------------------------------------------------------------------- #ENSRNOT00000058664 ENSRNOG00000016758 Loxl2 block448476 ---------------------------------------------------------------------------------------------------------------- #ENSRNOT00000058663 ENSRNOG00000016758 Loxl2 block448476 ---------------------------------------------------------------------------------------------------------------- #ENSRNOT00000058662 ENSRNOG00000016758 Loxl2 block448476 .(((.(((((((((((((...((..((((((((.((((.((((((((.....)))))....))))))).))))))))))...))))))))))..))).))). 1.000 -54.50 # mouseZ37p19 ...(((((((((((...((..((((.(((.(((((((.(((((.....)))))..)))..)))).))).))))))...)))))))))))... 1.000 -39.60 # #block448476 chromosome:15:50066560:50066661:-1 Opposite_strand|Intronic_coding|ENSRNOT00000058662|ENSRNOG00000016758 ## ENSRNOG00000016758|protein_coding|Loxl2|lysyl oxidase-like 2 Gene [Source:MGI Symbol;Acc:MGI:2137913] #mouseZ37p19 chromosome:14:70090659:70090800:-1 Opposite_strand|Boundary_non-coding|ENSMUST00000111062|ENSMUSG00000034205|protein_coding|lysyl oxidase-like 2 Gene [Source:MGI Symbol;Acc:MGI:2137913] ## Opposite_strand|Intronic_coding|ENSMUST00000100420|ENSMUSG00000034205|protein_coding|lysyl oxidase-like 2 Gene [Source:MGI Symbol;Acc:MGI:2137913] ========== block448483 [novel_lenNOK_cloningOK_mirtron_randfoldOK] ========== #randfold block448483: 0.001 #forester #identity: 0.00 block448483 TCCCTGTCCACCGCCCCT #rat_gr860806_libT1S1 18 3 block448483 TCCCTGTCCACCGCCCCTACA #rat_gr860807_libT3S1 21 2 block448483 CTCCCTGTCCACCGCCCCTAC #rat_gr424327_libT3S1 21 2 block448483 CTCCCTGTCCACCGCCCCTA #rat_gr424326_libT4S1 20 2 block448483 CTCCCTGTCCACCGCCCC #rat_gr424324_libT1S2 18 2 block448483 TCCCTGTCCACCGCCCCTACAG #rat_gr860808_libT4S2 22 1 block448483 TCCCTGTCCACCGCCCCTACA #rat_gr860807_libT1S2 21 1 block448483 TCCCTGTCCACCGCCCCTACA #rat_gr860807_libT5S1 21 1 block448483 CTCCCTGTCCACCGCCCCTACA #rat_gr424328_libT3S1 22 1 block448483 CTCCCTGTCCACCGCCCCTAC #rat_gr424327_libT1S1 21 1 block448483 CCTCCCTGTCCACCGCCCCTAC #rat_gr374506_libT1S1 22 1 block448483 CCTCCCTGTCCACCGCCCCTA #rat_gr374505_libT4S1 21 1 block448483 CTCCCTGTCCACCGCCCCT #rat_gr424325_libT5S2 19 1 block448483 CTCCCTGTCCACCGCCCC #rat_gr424324_libT1S1 18 1 block448483 CTCCCTGTCCACCGCCCC #rat_gr424324_libT3S2 18 1 block448483 gcagggacatttggggctgtgggcggcctctgggttcatattctgacccCCTCCCTGTCCACCGCCCCTACAGgctctgcc ********************************************************************************* block448483 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> #ENSRNOT00000022706 ENSRNOG00000016777 R3hcc1_predicted block448483 ((((((......(((((.((((((((.....(((((........))))).....)))))))).)))))......)))))). 1.000 -41.10 # #block448483 chromosome:15:50079598:50079678:-1 Same_strand|Intronic_coding|ENSRNOT00000022706|ENSRNOG00000016777 ## ENSRNOG00000016777|protein_coding|R3hcc1_predicted| ========== block456299 [novel_randfoldOK] ========== #randfold block456299: 0.009 #forester #identity: 0.00 block456299 TACACCCCACACACATACATG #rat_gr742395_libT2S1 21 1 block456299 ttgattatacccaagaaatgtatgttgggatatgtaagtgtgggtatgaacgcagcacacctgtctactcacctgcacaTACACCCCACACACATACATGacacatctgtaaacgg ******************************************************************************************************************** block456299 .((.(((((........((((((((((((...((((.(((..(((......((((.....))))......)))..))).)))).))))...))))))))........))))).)). 0.830 -31.69 # #block456299 chromosome:15:70404032:70404147:-1 intergenic ========== block460491 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block460491: 0.003 #forester #identity: 0.00 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT3S1 18 8 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT5S2 18 8 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT2S2 18 7 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT2S1 18 4 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT4S2 18 3 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT5S1 18 2 block460491 ATCCTGCTCACAGTGCCAA #rat_gr221695_libT1S1 19 1 block460491 ATCCTGCTCACAGTGCCAA #rat_gr221695_libT2S1 19 1 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT1S1 18 1 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT3S2 18 1 block460491 ATCCTGCTCACAGTGCCA #rat_gr221694_libT4S1 18 1 block460491 gctgaagatgccacgtgcttgtgtagcaggacacagagatcagaggggccgggctaggcccttctATCCTGCTCACAGTGCCAaagtacagca ********************************************************************************************* block460491 ------------------------------------------------------------------------------------------------------- #ENSRNOT00000036350 ENSRNOG00000009208 RGD1305077_predicted block460491 ((((....(((...((((.((((.(((((((..........(((((((((......))))))))).)))))))))))))))....))))))). 0.980 -39.70 # #block460491 chromosome:15:82895449:82895541:-1 Opposite_strand|Boundary_non-coding|ENSRNOT00000012239|ENSRNOG00000009208 ## Opposite_strand|Intronic_coding|ENSRNOT00000036350|ENSRNOG00000009208 ## ENSRNOG00000009208|protein_coding|RGD1305077_predicted| ========== block462384 [novel_randfoldOK] ========== #randfold block462384: 0.007 #forester #identity: 0.00 block462384 CCTGACGCAGCAGCAACACGTA #rat_gr377641_libT3S2 22 1 block462384 cagtcactggccagcgtgaagctgctgagtcagccttgatcacagagcctgagaaCCTGACGCAGCAGCAACACGTAcgctctgaacagttctgt *********************************************************************************************** block462384 (((..((((..(((((((..(((((((.(((((......(((.......)))....))))).)))))))..))))......)))..)))).))). 0.990 -35.30 # #block462384 chromosome:15:87685552:87685646:-1 intergenic ========== block468138 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block468138: 0.010 #forester #identity: 0.00 block468138 TGTGATCTTTGCTCTGGGGT #rat_gr1084163_libT3S1 20 2 block468138 TGTGATCTTTGCTCTGGG #rat_gr1084160_libT1S1 18 2 block468138 TGTGATCTTTGCTCTGGGGTGG #rat_gr1084165_libT4S1 22 1 block468138 TGTGATCTTTGCTCTGGGGTG #rat_gr1084164_libT1S1 21 1 block468138 TGTGATCTTTGCTCTGGGGTG #rat_gr1084164_libT2S1 21 1 block468138 TGTGATCTTTGCTCTGGGGTG #rat_gr1084164_libT4S2 21 1 block468138 TGTGATCTTTGCTCTGGGGT #rat_gr1084163_libT1S2 20 1 block468138 TGTGATCTTTGCTCTGGGG #rat_gr1084162_libT3S1 19 1 block468138 TGTGATCTTTGCTCTGGGG #rat_gr1084162_libT4S2 19 1 block468138 TGTGATCTTTGCTCTGGG #rat_gr1084160_libT4S2 18 1 block468138 tgtttcttaccgtcactcagaggaatggtgtgacaacagtatggagacgtgaaacattacttcaagagtttcctatTGTGATCTTTGCTCTGGGGTGGaaaca ******************************************************************************************************* block468138 .(((((.((((.....((((((.((......((..((((((.((((((.((((.......))))...))))))))))))..)).)).))))))))))))))). 0.860 -31.90 # #block468138 chromosome:15:103693249:103693351:-1 intergenic ========== block468503 [novel_randfoldOK] ========== #randfold block468503: 0.001 #forester #identity: 0.00 block468503 TTCAAACTCAAGTCAAAACCAA #rat_gr1107020_libT1S1 22 1 block468503 tgagtcagaagctgaatcacagctaataTTCAAACTCAAGTCAAAACCAAgctgaactgaacttggttttgacttgagtttgaatattagctctgatggtctaatatc ************************************************************************************************************ block468503 ......(((......((((.(((((((((((((((((((((((((((((((..........))))))))))))))))))))))))))))))).))))..)))...... 0.710 -52.30 # #block468503 chromosome:15:104744113:104744220:-1 intergenic ========== block469284 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block469284: 0.003 #forester #identity: 0.00 block469284 TGGCCTGGCCTGGGTCCCC #rat_gr1012739_libT4S2 19 4 block469284 TGGCCTGGCCTGGGTCCCC #rat_gr1012739_libT4S1 19 2 block469284 TGGCCTGGCCTGGGTCCCC #rat_gr1012739_libT1S1 19 1 block469284 TGGCCTGGCCTGGGTCCCC #rat_gr1012739_libT2S2 19 1 block469284 TGGCCTGGCCTGGGTCCC #rat_gr1012738_libT4S1 18 1 block469284 TGGCCTGGCCTGGGTCCC #rat_gr1012738_libT5S2 18 1 block469284 tgcccaggcacagaacaatgacaTGGCCTGGCCTGGGTCCCCtcctcagagctgagaatctgattgggggggggggtcagtgttgggttggttccttgtgtgtataatgaggcag ******************************************************************************************************************* block469284 ((((((.(((((.((....(((.(((((..((((((.(((((((((((((........)))))....)))))))).)))).))..))))))))..)).)))))....)).)))). 1.000 -52.10 # #block469284 chromosome:15:106320280:106320394:-1 intergenic ========== block470126 [novel_randfoldOK] ========== #randfold block470126: 0.002 #forester #identity: 0.00 block470126 TACCTTCTGCATGTGTTTTGTTT #rat_gr752115_libT1S1 23 1 block470126 aggatatggtggtaacaaaacaatgatgctagaaggtaagatgattgcttttgcttcatgcataaTACCTTCTGCATGTGTTTTGTTTtataggagtct *************************************************************************************************** block470126 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> #ENSRNOT00000057411 ENSRNOG00000014310 RGD1560183_predicted block470126 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> #ENSRNOT00000019602 ENSRNOG00000014310 RGD1560183_predicted block470126 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>> #ENSRNOT00000037228 ENSRNOG00000014310 RGD1560183_predicted block470126 .((((...((((.(((((((((...((((.((((((((..(((...((....))......)))..)))))))))))).)))))))))))))....)))) 1.000 -30.70 # #block470126 chromosome:15:108063028:108063126:-1 Same_strand|Intronic_coding|ENSRNOT00000019602|ENSRNOG00000014310 ## Same_strand|Intronic_non-coding|ENSRNOT00000037228|ENSRNOG00000014310 ## ENSRNOG00000014310|protein_coding|RGD1560183_predicted| ========== block476853 [novel_randfoldOK] ========== #randfold block476853: 0.002 #forester #identity: 0.00 block476853 CTGGTTTCTTGGGCAGCCTTGT #rat_gr453005_libT1S2 22 1 block476853 gaagtgtgcggcaaggtgaggcctaaggttctggggggagggagctagcagcccCTGGTTTCTTGGGCAGCCTTGTacacctct ************************************************************************************ block476853 >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000012452 ENSRNOG00000009206 NP_001100721.1 block476853 ((.((((...(((((((...((((((((..(((((((.((....)).....)))))))..)))))))).))))))))))).)). 1.000 -40.90 # #block476853 chromosome:15:14352263:14352346:1 Same_strand|Intronic_coding|ENSRNOT00000012452|ENSRNOG00000009206 ## ENSRNOG00000009206|protein_coding|NP_001100721.1|zinc finger protein 312 [Source:RefSeq_peptide;Acc:NP_001100721] ========== block477778 [novel_randfoldOK] ========== #randfold block477778: 0.001 #forester #identity: 0.00 block477778 CTGCTTGGTTTTACCTTGTT #rat_gr445762_libT2S1 20 1 block477778 tggctcatccagaataacagtagaacttagagtaggacaaagcctgaCTGCTTGGTTTTACCTTGTTccgtgtgatgccat ********************************************************************************* block477778 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000009393 ENSRNOG00000007167 Fhit block477778 ((((((((...((((((..((((((((.((((((((......)))).)).)).)))))))).))))))...)))).)))). 1.000 -26.70 # #block477778 chromosome:15:17131449:17131529:1 Same_strand|Intronic_coding|ENSRNOT00000009393|ENSRNOG00000007167 ## ENSRNOG00000007167|protein_coding|Fhit|Bis(5'-adenosyl)-triphosphatase (EC 3.6.1.29) (Diadenosine 5',5'''- P1,P3-triphosphate hydrolase) (Dinucleosidetriphosphatase) (AP3A hydrolase) (AP3Aase) (Fragile histidine triad protein). [Source:UniProtKB/Swiss-Prot;Acc:Q9JIX3] ========== block478807 [novel_randfoldOK] ========== #randfold block478807: 0.007 #forester #identity: 0.00 block478807 TCCTAGGGTGCCCTGCCGCT #rat_gr870240_libT3S2 20 1 block478807 agcttccttggcagacagagcaccaggatcctctgcttaaggacgttcaccttctctgtatctcagtgtggtgagagtgagcaagtcaTCCTAGGGTGCCCTGCCGCTggcaagcta ********************************************************************************************************************* block478807 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046636 ENSRNOG00000033478 block478807 (((((((.((((((.....((((((((((.((.((((((......((((((....(((.....)))...))))))..))))))))..)))))..))))).))))))..)).))))). 0.990 -45.70 # #block478807 chromosome:15:19377415:19377531:1 Same_strand|Intronic_coding|ENSRNOT00000046636|ENSRNOG00000033478 ## ENSRNOG00000033478|protein_coding|| ========== block478925 [novel_randfoldOK] ========== #randfold block478925: 0.007 #forester #identity: 0.00 block478925 TCCTAGGGTGCCCTGCCGCT #rat_gr870240_libT3S2 20 1 block478925 agcttccttggcagacagagcaccaggatcctctgcttaaggacgttcaccttctctgtatctcagtgtggtgagagtgagcaagtcaTCCTAGGGTGCCCTGCCGCTggcaagcta ********************************************************************************************************************* block478925 ------------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061053 ENSRNOG00000022493 block478925 (((((((.((((((.....((((((((((.((.((((((......((((((....(((.....)))...))))))..))))))))..)))))..))))).))))))..)).))))). 0.990 -45.70 # #block478925 chromosome:15:19591366:19591482:1 Opposite_strand|Boundary_non-coding|ENSRNOT00000038839|ENSRNOG00000022493 ## Opposite_strand|Intronic_coding|ENSRNOT00000061053|ENSRNOG00000022493 ## ENSRNOG00000022493|protein_coding|| ========== block479424 [novel_randfoldOK] ========== #randfold block479424: 0.007 #forester #identity: 0.00 block479424 TCCTAGGGTGCCCTGCCGCT #rat_gr870240_libT3S2 20 1 block479424 agcttccttggcagacagagcaccaggatcctctgcttaaggacgttcaccttctctgtatctcagtgtggtgagagtgagcaagtcaTCCTAGGGTGCCCTGCCGCTggcaagcta ********************************************************************************************************************* block479424 (((((((.((((((.....((((((((((.((.((((((......((((((....(((.....)))...))))))..))))))))..)))))..))))).))))))..)).))))). 0.990 -45.70 # #block479424 chromosome:15:20710469:20710585:1 intergenic ========== block479799 [novel_randfoldOK] ========== #randfold block479799: 0.001 #forester #identity: 0.00 block479799 GGACTCTGGTTGTGGTTTTTCAAG #rat_gr586247_libT5S1 24 1 block479799 gttcctccttaaaccaccctccggagtcccaggaactGGACTCTGGTTGTGGTTTTTCAAGcttggtagca *********************************************************************** block479799 --------------------------------------------------------------------------------- #ENSRNOT00000012400 ENSRNOG00000009102 Plekhc1 block479799 (((((..((((((((((...(((((((((........)))))))))..)))))))...)))...)).))). 0.920 -28.30 # #block479799 chromosome:15:21421824:21421894:1 Opposite_strand|Intronic_coding|ENSRNOT00000012400|ENSRNOG00000009102 ## ENSRNOG00000009102|protein_coding|Plekhc1|pleckstrin homology domain containing, family C (with FERM domain) member 1 [Source:RefSeq_peptide;Acc:NP_001011915] ========== block481663 [novel_randfoldOK] ========== #randfold block481663: 0.002 #forester #identity: 0.00 block481663 ACCTCTGAGCTGCTCTCTTG #rat_gr106448_libT4S1 20 1 block481663 taggaagaggagtcagatggcctttggaaggggcatctgacaggtatgaagtccaaggtttgcagacttcACCTCTGAGCTGCTCTCTTGtctgctatatgactctctctctct ****************************************************************************************************************** block481663 .((..((((((((((.(((((....((((((((((.((..((((..(((((((...........)))))))..)))))).))))).))).)).))))).)))))).))))..)) 0.970 -41.80 # #block481663 chromosome:15:24970967:24971080:1 intergenic ========== block484766 [novel_randfoldOK] ========== #randfold block484766: 0.010 #forester #identity: 0.00 block484766 GGCGGGGGGTGGGGGTGGGGGGTG #rat_gr598111_libT4S1 24 1 block484766 ggtgaagcttttacttcaccctctgggctcttctgtcaaggccctgccatgtgtcaggagcagggctggaagagaggggcatgcgGGCGGGGGGTGGGGGTGGGGGGTGtcagcc ******************************************************************************************************************* block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060256 ENSRNOG00000009074 Q569A8_RAT block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000012019 ENSRNOG00000009074 Q569A8_RAT block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060255 ENSRNOG00000009074 Q569A8_RAT block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060254 ENSRNOG00000009074 Q569A8_RAT block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060253 ENSRNOG00000009074 Q569A8_RAT block484766 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000060252 ENSRNOG00000009074 Q569A8_RAT block484766 (((((.((((((.((((((((((((.((((((((.((..((((((((..((...))...)))))))).))..)))))))).......))))))))))))...)))))).))).)) 0.990 -53.30 # #block484766 chromosome:15:32241551:32241665:1 Same_strand|Boundary_non-coding|ENSRNOT00000060250|ENSRNOG00000009074 ## Same_strand|Intronic_coding|ENSRNOT00000060252|ENSRNOG00000009074 ## ENSRNOG00000009074|protein_coding|Q569A8_RAT|RGD1359684 protein. [Source:UniProtKB/TrEMBL;Acc:Q569A8] ## {Repeats: dust 32241639 32241657 0 class=dust} ========== block485454 [novel_randfoldOK] ========== #randfold block485454: 0.001 #forester #identity: 0.00 block485454 TCTCCTTTCCCCTTCCGCCT #rat_gr901302_libT5S2 20 1 block485454 cagggtgaggtggagagggagagataaggcaaggctgtggagaaacatgcttttcattccaggaactgTCTCCTTTCCCCTTCCGCCTggttct ********************************************************************************************** block485454 -------------------------------------------------------------------------------------------------------- #ENSRNOT00000034102 ENSRNOG00000039224 block485454 .((((..(((((((..(((((((...(((((...((.((((((((......))))..))))))...))))).)))))))..)))))))..)))) 0.850 -36.30 # #block485454 chromosome:15:33184216:33184309:1 Opposite_strand|Intronic_non-coding|ENSRNOT00000034102|ENSRNOG00000039224 ## ENSRNOG00000039224|protein_coding|| ========== block485799 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block485799: 0.007 #forester #identity: 0.00 block485799 CCCTGTCTCTATTTCTCCCCA #rat_gr362909_libT1S2 21 1 block485799 gctgggaaatgggacagtggctggatcgagggaaacaatgCCCTGTCTCTATTTCTCCCCAg ************************************************************** block485799 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>> #ENSRNOT00000026333 ENSRNOG00000019438 NP_001102338.1 block485799 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>> #ENSRNOT00000042097 ENSRNOG00000019438 NP_001102338.1 block485799 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>> #ENSRNOT00000029569 ENSRNOG00000019438 NP_001102338.1 block485799 .((((((((((((((((.(((((..((....))..))..)))))))).))))))...))))) 1.000 -24.90 # #block485799 chromosome:15:33737308:33737369:1 Same_strand|Intronic_coding|ENSRNOT00000029569|ENSRNOG00000019438 ## ENSRNOG00000019438|protein_coding|NP_001102338.1|ring finger protein 31 [Source:RefSeq_peptide;Acc:NP_001102338] ========== block486010 [novel_mirtron_randfoldOK] ========== #randfold block486010: 0.006 #forester #identity: 0.00 block486010 ACTTCCTCTTTCCTCCTGTA #rat_gr128930_libT4S2 20 1 block486010 ggtgttgatctcagacgcctgggagggaggcgaggtcatctctgtgACTTCCTCTTTCCTCCTGTAgccttctgcccttcacc *********************************************************************************** block486010 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027802 ENSRNOG00000020506 RGD1565688_predicted block486010 --------------------------------------------------------------------------------------------- #ENSRNOT00000027880 ENSRNOG00000020544 NP_001101848.1 block486010 ((((.......((((.((..((((((((((.((((((((....))))))))..))))))))))...))..)))).....)))) 0.650 -32.70 # #block486010 chromosome:15:34039518:34039600:1 Opposite_strand|Intronic_coding|ENSRNOT00000027880|ENSRNOG00000020544 ## Same_strand|Intronic_coding|ENSRNOT00000027802|ENSRNOG00000020506 ## ENSRNOG00000020506|protein_coding|RGD1565688_predicted| ## ENSRNOG00000020544|protein_coding|NP_001101848.1|similar to HCDI protein (predicted) (RGD1309307_predicted), mRNA [Source:RefSeq_dna;Acc:NM_001108378] ========== block487383 [novel_randfoldOK] ========== #randfold block487383: 0.006 #forester #identity: 0.00 block487383 AGCCCTGGAATCCCTGCAGGCA #rat_gr159202_libT3S2 22 1 block487383 tcccctcccagccAGCCCTGGAATCCCTGCAGGCAcaccagagtcggatctgtggcctggtgggattgctgttggcatggctgtgtccctgggggc ************************************************************************************************ block487383 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000012988 ENSRNOG00000009278 NP_001100736.1 block487383 (((((...(((((((((..((((((((..(((((.((.((((......)))))))))))..)))))).))...))).)))))).......))))). 0.980 -46.30 # #block487383 chromosome:15:36545461:36545556:1 Same_strand|Intronic_coding|ENSRNOT00000012988|ENSRNOG00000009278 ## ENSRNOG00000009278|protein_coding|NP_001100736.1|intraflagellar transport 88 homolog [Source:RefSeq_peptide;Acc:NP_001100736] ========== block488832 [novel_randfoldOK] ========== #randfold block488832: 0.003 randfold human4p21_block488832: 0.061 #forester human4p21_block488832: 0.379476 #identity: 64.06 block488832 AGTTTGCTGCCTCTGA-GAGTTCC #rat_gr204369_libT1S2 23 1 block488832 GGCCATTCTTCAGCAGACTCTCTCAGTTTGCTGCCTCTGA-GAGTTCCTGTAAACAGGCCTCTCACGGGTGCAAACACAGATCA-----AGGACGCTGTGACCA human4p21 G------------------CTCAAAGTTTGCTGCCTCTGATGAAGGTTTAAGAATACAC----------------TACAGATTACAGGCAGGAAATTATCAAGC * *** **************** ** * ** * * ****** * **** * * * block488832 ((.((.....((((...((.(((..((((((.((((.((( (((..((((....)))).)))))).))))))))))..)))... ))...)))))).)). 0.750 -34.80 # human4p21 ( ((...(((((.((((((.(((((.((((........)).) ).))..))).)))))).)))))....))) 0.999 -16.00 # #block488832 chromosome:15:40167414:40167511:1 intergenic #human4p21 chromosome:9:124317911:124317980:-1 intergenic ========== block488897 [novel_randfoldOK] ========== #randfold block488897: 0.001 #forester #identity: 0.00 block488897 TTCCATCATCAGACAGAATGGTC #rat_gr1115963_libT3S2 23 1 block488897 agaaatttcctcagTTCCATCATCAGACAGAATGGTCcagaatcttttggacaaattacggtctgatggggcagaacttctaatgtttct ****************************************************************************************** block488897 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000038665 ENSRNOG00000014509 Sacs_predicted block488897 ((((((......(((((..(((((((((..(((.(((((((....)))))))..)))...)))))))))....)))))......)))))) 1.000 -30.00 # #block488897 chromosome:15:40337756:40337845:1 Same_strand|Intronic_coding|ENSRNOT00000038665|ENSRNOG00000014509 ## Same_strand|Boundary_non-coding|ENSRNOT00000059337|ENSRNOG00000014509 ## ENSRNOG00000014509|protein_coding|Sacs_predicted| ========== block490990 [novel_randfoldOK] ========== #randfold block490990: 0.002 #forester #identity: 0.00 block490990 TGGCGGCTCTCAGCTCTCCTAGAC #rat_gr1013608_libT1S2 24 2 block490990 TGGCGGCTCTCAGCTCTCCTAG #rat_gr1013607_libT2S1 22 1 block490990 TGGCGGCTCTCAGCTCTCCTAGAC #rat_gr1013608_libT1S1 24 1 block490990 cacagcactgtaccgtaaagctctccccagaaggcggagcttggagccccgccctgtttaggTGGCGGCTCTCAGCTCTCCTAGACtgggaaggggatgcgcactgtgattttgtg ******************************************************************************************************************** block490990 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000059064 ENSRNOG00000038690 block490990 ((((.(((.((..((((...((((.(((((.(((.((((((.(((((((((((.......))))).)))))).)))))))))...))))).))))..)))).)).)))....)))) 1.000 -53.40 # #block490990 chromosome:15:45020449:45020564:1 Same_strand|Intronic_coding|ENSRNOT00000059064|ENSRNOG00000038690 ## ENSRNOG00000038690|protein_coding|| ========== block491221 [novel_mirtron_randfoldOK] ========== #randfold block491221: 0.009 randfold mouseZ5p21_block491221: 0.003 #forester mouseZ5p21_block491221: 0.861751 #identity: 94.51 block491221 GACACTTCTCCTGCCTTCTTC #rat_gr492952_libT3S2 21 1 block491221 ATTGTGCAGAGACACTTCTCCTGCCTTCTTCTAGGTGACAACCCATTCTTCTGACTCAGAAGTCCCCTCTCGTGTCACTGAGGTGGTGGTGAAGCTGTTTGACTCTGACCCCATCACAGT mouseZ5p21 ---------AGACACTTCTCCTGCCTTCCTCTAGGTGACCACCCATTCCTCTGACTCAGAGGTCCCCTCCCGTGTCACTGAGGTGGTGGTGAAGCTGTTT-------------------- ******************* ********** ******** *********** ******** ****************************** block491221 +++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000022095 ENSRNOG00000016460 Clu block491221 ((((((((((((((((((.((.(((..((((..(((((((.......((((((...))))))..........))))))))))).))))).)))).)))....))))).......)))))) 1.000 -37.14 # mouseZ5p21 (((((((((.((.(((..((((..(((((.(((.....((((((...)))))).........)))))))))))).))))).)))).))))) 0.983 -33.44 # #block491221 chromosome:15:45404587:45404706:1 Same_strand|Intronic_coding|ENSRNOT00000022095|ENSRNOG00000016460 ## ENSRNOG00000016460|protein_coding|Clu|Clusterin precursor (Sulfated glycoprotein 2) (SGP-2) (Dimeric acid glycoprotein) (DAG) (Testosterone repressed prostate message 2) (TRPM- 2) [Contains: Clusterin beta chain; Clusterin alpha chain]. [Source:UniProtKB/Swiss-Prot;Acc:P05371] #mouseZ5p21 chromosome:14:66599666:66599756:1 Same_strand|Boundary_coding|ENSMUST00000022616|ENSMUSG00000022037|protein_coding|clusterin Gene [Source:MGI Symbol;Acc:MGI:88423] ========== block492188 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block492188: 0.007 randfold mouseZ6p21_block492188: 0.002 #forester mouseZ6p21_block492188: 0.587495 #identity: 86.32 block492188 CCTTCATTCCCTTCCCCACCA #rat_gr383729_libT1S1 21 1 block492188 CC------------------TTGGTTGTGGGGAAAAATAATGAATGTGTGCTTAGAGCAAGTCATGAACACATCCATTGTTGGTCTAACTGTACCCTTCATTCCCTTCCCCACCAGGA--------------------- mouseZ6p21 TCTTGTATTTGCCTTTGAGGTTGGTTGTAGAGGAAAGTAATGAATGTGGGCTTAGAGCA----ATGAACACATCCAGCCTTGCTCTAACTGTACTCTTCATTCCC-TCTCCACCAGAAAACTCTTGGAAGGCGAAGAGA * ******** * * *** *********** ********** ************* *** *********** ********** ** ******* * block492188 +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>> >>>>> #ENSRNOT00000018599 ENSRNOG00000013658 Nefl block492188 .( (((((...((((((....((((((...(((((((((.(((...(((........)))..))).)))))..))))..))))))...)))))))))))). 0.880 -30.00 # mouseZ6p21 ((((...((((((((((((.((((.((.(((((.....((((((.(((((.(((((((( (((........))...))))))))))).)))..)))))).)) ))).))))))....)))...))))))))))))) 0.999 -39.60 # #block492188 chromosome:15:47638756:47638855:1 Same_strand|Intronic_coding|ENSRNOT00000018599|ENSRNOG00000013658 ## ENSRNOG00000013658|protein_coding|Nefl|Neurofilament light polypeptide (NF-L) (Neurofilament triplet L protein) (68 kDa neurofilament protein). [Source:UniProtKB/Swiss-Prot;Acc:P19527] #mouseZ6p21 chromosome:14:68704433:68704566:1 Opposite_strand|Intronic_coding|ENSMUST00000111089|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Opposite_strand|Boundary_non-coding|ENSMUST00000022638|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Same_strand|Boundary_coding|ENSMUST00000022639|ENSMUSG00000022055|protein_coding|neurofilament, light polypeptide Gene [Source:MGI (curated);Acc:Nefl-001] ========== block504089 [novel_randfoldOK] ========== #randfold block504089: 0.004 #forester #identity: 0.00 block504089 TGGAGCATGTTTCATTGTCTGAG #rat_gr998925_libT1S1 23 1 block504089 gtgttttaggtgttgatTGGAGCATGTTTCATTGTCTGAGcgagcttttcatttgcttccaagggaaactgaatcatgcttcaagaatagcacgaaaagac ***************************************************************************************************** block504089 ((.((((..((((((.((((((((((.((((...((((((((((.......))))))).....)))...)))).))))))))))...)))))).)))).)) 0.830 -31.60 # #block504089 chromosome:15:78929085:78929185:1 intergenic ========== block513493 [novel_randfoldOK] ========== #randfold block513493: 0.001 #forester #identity: 0.00 block513493 TTCAAACTCAAGTCAAAACCAA #rat_gr1107020_libT1S1 22 1 block513493 agatattagaccatcagagctaataTTCAAACTCAAGTCAAAACCAAgttcagttcagcttggttttgacttgagtttgaatattagctgtgattcagcttctgactcatct **************************************************************************************************************** block513493 ((((.(((((..((((.(((((((((((((((((((((((((((((((((......))))))))))))))))))))))))))))))))).))))......)))))...)))) 0.540 -58.20 # #block513493 chromosome:15:104744112:104744223:1 intergenic ========== block513661 [novel_randfoldOK] ========== #randfold block513661: 0.005 #forester #identity: 0.00 block513661 TGCCTCCCCTCCATACCTCCCC #rat_gr967922_libT1S2 22 1 block513661 gaaatgtttccgtacaacggtctcaaggaaggggggggggggcacagcaactcagttggTGCCTCCCCTCCATACCTCCCCtgtctcccatttgccaggagttcttc *********************************************************************************************************** block513661 .......((((...(((.((...((.((.(((((((((((((((((((......)))).))))))))))))...))).)).))...))...)))...))))...... 0.740 -42.30 # #block513661 chromosome:15:105219181:105219287:1 intergenic ========== block513800 [novel_cloningOK] ========== #randfold block513800: 0.059 #forester #identity: 0.00 block513800 CCCTCCAAGAGTAAACAACTGTG #rat_gr359725_libT3S1 23 2 block513800 CCCTCCAAGAGTAAACAACTGTG #rat_gr359725_libT5S2 23 2 block513800 CCTCCAAGAGTAAACAACTGTG #rat_gr373257_libT5S1 22 2 block513800 CCCTCCAAGAGTAAACAACTGT #rat_gr359724_libT2S1 22 1 block513800 CCCTCCAAGAGTAAACAACTGTG #rat_gr359725_libT2S1 23 1 block513800 CCCTCCAAGAGTAAACAACTGTG #rat_gr359725_libT4S2 23 1 block513800 CCCTCCAAGAGTAAACAACTGTG #rat_gr359725_libT5S1 23 1 block513800 CCTCCAAGAGTAAACAACTGT #rat_gr373256_libT3S2 21 1 block513800 CCTCCAAGAGTAAACAACTGT #rat_gr373256_libT5S1 21 1 block513800 ggagtgaatggatgaggctggttgctttgCCCTCCAAGAGTAAACAACTGTGcttgtcagcacggacacagtgtggtgggctcaggggagaaggaaggacaccgaggccaatcctccg ********************************************************************************************************************** block513800 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000057556 ENSRNOG00000010737 NP_001104534.1 block513800 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014300 ENSRNOG00000010737 NP_001104534.1 block513800 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014315 ENSRNOG00000010737 NP_001104534.1 block513800 ((((.((.(((....((.((....((((.((((((..((((..((.((((((..(((....)))..))))))...))..))))...))))..)))))).))))....))).)))))). 0.940 -42.70 # #block513800 chromosome:15:105474933:105475050:1 Same_strand|Intronic_coding|ENSRNOT00000014300|ENSRNOG00000010737 ## Same_strand|Boundary_non-coding|ENSRNOT00000057557|ENSRNOG00000010737 ## ENSRNOG00000010737|protein_coding|NP_001104534.1|muscleblind-like 2 [Source:RefSeq_peptide;Acc:NP_001104534] ========== block516146 [novel_randfoldOK] ========== #randfold block516146: 0.008 #forester #identity: 0.00 block516146 CGGCTCTGGTTCCCGCTCCT #rat_gr399382_libT1S1 20 1 block516146 gcaggctggagcccggaggagcgcagcgagagcgcggagatccactcggctcCGGCTCTGGTTCCCGCTCCTcaccggccggcg ************************************************************************************ block516146 ((.((((((......((((((((.(((.(((((.(((((..((....)))))))))))).)))..)))))))).)))))).)). 1.000 -49.60 # #block516146 chromosome:16:1038069:1038152:-1 intergenic ## {SimpF: 1 Eponine,oe = 0.78 -1 CpG, -1 Eponine} ========== block516320 [novel_randfoldOK] ========== #randfold block516320: 0.002 #forester #identity: 0.00 block516320 TGCTCGATCTCCCTGGCCTCTAA #rat_gr972630_libT1S1 23 1 block516320 TGCTCGATCTCCCTGGCCTC #rat_gr972629_libT1S2 20 1 block516320 TGCTCGATCTCCCTGGCCTC #rat_gr972629_libT5S1 20 1 block516320 ggacatagagcatctatatcTGCTCGATCTCCCTGGCCTCTAAtactgtcttgggttagagagcaggacatagagcatctatatctgctcgatctccc ************************************************************************************************** block516320 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061883 ENSRNOG00000040205 AC154759.2 block516320 (((.((.(((((..((((..(((((.((.(((...(((((((((.((.....))))))))).)).))).)).)))))..))))..))))).)).))). 1.000 -34.50 # #block516320 chromosome:16:1353725:1353822:-1 Same_strand|Intronic_coding|ENSRNOT00000061883|ENSRNOG00000040205 ## ENSRNOG00000040205|protein_coding|AC154759.2| ## {Repeats: trf 59 82 0 class=trf} ========== block518537 [novel_randfoldOK] ========== #randfold block518537: 0.001 #forester #identity: 0.00 block518537 GTGCAGCCCTGTTCCAGGTTCTC #rat_gr646354_libT1S1 23 1 block518537 GTGCAGCCCTGTTCCAGGTTCTC #rat_gr646354_libT3S1 23 1 block518537 ggaggaagttgcattttacagagaggatataaaagcgagcctgtgaatgggtgctgggcagaggcaaaggaaggcccctGTGCAGCCCTGTTCCAGGTTCTCtctgtgtcctcc ****************************************************************************************************************** block518537 ((((((..........((((((((((............(((((.(((((((.((((.((((.(((........))).)))).)))))))))))))))))))))))))))))))) 0.980 -55.70 # #block518537 chromosome:16:5908621:5908734:-1 intergenic ========== block518725 [novel_randfoldOK] ========== #randfold block518725: 0.001 #forester #identity: 0.00 block518725 TGGGGTGGAGGTGGGTGGGT #rat_gr1051089_libT1S1 20 1 block518725 ggtgggggcagctcTGGGGTGGAGGTGGGTGGGTagaaagggaggagccagccagagggaagttagtcctgcctactgccctctaattctcctccacccctaagtgctccctcta ******************************************************************************************************************* block518725 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000023632 ENSRNOG00000017381 Itih4 block518725 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061294 ENSRNOG00000017381 Itih4 block518725 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000048344 ENSRNOG00000017381 Itih4 block518725 ----------------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000061292 ENSRNOG00000017381 Itih4 block518725 ((.(((((((.((..((((((((((.((((((((((..(((.((((((...((....))..))...)))).))).))))))....)))).))))))))))..))))))))).)). 1.000 -62.40 # #block518725 chromosome:16:6321587:6321701:-1 Opposite_strand|Intronic_coding|ENSRNOT00000048344|ENSRNOG00000017381 ## ENSRNOG00000017381|protein_coding|Itih4|inter-alpha-inhibitor H4 heavy chain [Source:RefSeq_peptide;Acc:NP_062242] ## {Repeats: dust 6321668 6321688 0 class=dust} ========== block519096 [novel_mirtron_randfoldOK] ========== #randfold block519096: 0.004 #forester #identity: 0.00 block519096 TGCCTCCCTTGGTCCTGACAGA #rat_gr967938_libT3S1 22 1 block519096 TGCCTCCCTTGGTCCTGACAGA #rat_gr967938_libT4S1 22 1 block519096 TGCCTCCCTTGGTCCTGACA #rat_gr967937_libT3S1 20 1 block519096 CTGCCTCCCTTGGTCCTGACA #rat_gr443610_libT2S2 21 1 block519096 TGCCTCCCTTGGTCCTGAC #rat_gr967936_libT3S2 19 1 block519096 gggcgggccaggtccccaggaccgatggcaggcggcccgcctggcctcacaggCTGCCTCCCTTGGTCCTGACAGAtaaaactagctttccca ********************************************************************************************* block519096 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000035009 ENSRNOG00000026914 Dnah1 block519096 (((..(((.(((((..(((((((((.((.(((((....(((((......)))))))))))).)))))))))...)))....)).)))..))). 0.990 -45.00 # #block519096 chromosome:16:6718397:6718489:-1 Same_strand|Boundary_coding|ENSRNOT00000035009|ENSRNOG00000026914 ## Same_strand|Boundary_non-coding|ENSRNOT00000026052|ENSRNOG00000026914 ## ENSRNOG00000026914|protein_coding|Dnah1|dynein, axonemal, heavy polypeptide 1 [Source:RefSeq_peptide;Acc:NP_001028827] ========== block519439 [novel_randfoldOK] ========== #randfold block519439: 0.001 #forester #identity: 0.00 block519439 TAATTGTGTGTGTGTCACAC #rat_gr736815_libT1S1 20 1 block519439 tgtcacacctcattgtgtatgtgtgtgttacaccTAATTGTGTGTGTGTCACACctcattgtgtatgtatgtgttacacctaattgtgtgtgtcacaccacattgtgtgtgtgtgtca ********************************************************************************************************************** block519439 ((.(((((..(((.....(((((((((.(((((.((((((.(((((...((((...(((.....)))..)))).))))).)))))).))))).))))).))))...))).))))).)) 0.990 -39.30 # #block519439 chromosome:16:7257285:7257402:-1 intergenic ## {Repeats: trf 192 212 0 class=trf,trf 190 210 0 class=trf,dust 7257349 7257369 0 class=dust} ========== block521010 [novel_randfoldOK] ========== #randfold block521010: 0.007 #forester #identity: 0.00 block521010 GAGGTGGTGGTCTCTGCGCTGT #rat_gr515109_libT5S1 22 1 block521010 tgaggcctttgagtggaaaagggtttcgcagagatgggagctgaaccacctcggaagaaatgggcgtccattcaatcctGAGGTGGTGGTCTCTGCGCTGTtccaagaagctca ****************************************************************************************************************** block521010 .(((..((((...(((((.((.....(((((((((.........(((((((((((...(((((....)))))...))).)))))))).))))))))))).))))).))))))). 0.950 -44.90 # #block521010 chromosome:16:10323954:10324067:-1 intergenic ========== block522616 [novel_randfoldOK] ========== #randfold block522616: 0.005 randfold mouseZ28p21_block522616: 0.073 #forester mouseZ28p21_block522616: 0.941583 #identity: 96.61 block522616 GGATCCTGGCACCATTTTAC #rat_gr590640_libT5S1 20 1 block522616 GGGCTGTCATTTCTATGGCCTGAGGGATCCTGGCACCATTTTACTTTGCAGAAAGCCAATATTAAAACAGTCCCCAGGTATCCTATTTCTCTTCCCAAATGGCGGCCC mouseZ28p21 ------------------------GGATCCTGGTACCATTTTACTTTGCAGAAAGCCAATATTAAAACAGTCCCTAGGTATCC------------------------- ********* **************************************** ******** block522616 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046842 ENSRNOG00000033894 Nrg3 block522616 (((((((((((....(((...((((((((((((.((..(((((..((((.....)).))...)))))..))..))))).)))).....)))...)))))))))))))) 0.990 -34.50 # mouseZ28p21 (((((((((.((..(((((..((((.....)).))...)))))..)).)).))).)))) 0.999 -11.30 # #block522616 chromosome:16:14733215:14733322:-1 Same_strand|Intronic_coding|ENSRNOT00000046842|ENSRNOG00000033894 ## ENSRNOG00000033894|protein_coding|Nrg3|neuregulin 3 Gene [Source:MGI Symbol;Acc:MGI:1097165] #mouseZ28p21 chromosome:14:39246493:39246640:-1 Same_strand|Intronic_coding|ENSMUST00000042378|ENSMUSG00000041014|protein_coding|neuregulin 3 Gene [Source:MGI Symbol;Acc:MGI:1097165] ========== block523029 [novel_randfoldOK] ========== #randfold block523029: 0.001 #forester #identity: 0.00 block523029 GCACACACACACGCACTTAC #rat_gr528689_libT2S1 20 1 block523029 tgtgtgtgtatgtgtgtgtgtgtgtgtatgtatgtttgtgagagagagagatgcagagacagacagagacagagagcacagagacagaaagGCACACACACACGCACTTACacacat ********************************************************************************************************************* block523029 .(((((((((.((((((((((((((((.....((((((((...........((..........))...........))))..)))).....)))))))))))))))).))))))))) 1.000 -47.75 # #block523029 chromosome:16:15935562:15935678:-1 intergenic ## {Repeats: dust 15935572 15935588 0 class=dust} ========== block523289 [novel_randfoldOK] ========== #randfold block523289: 0.001 #forester #identity: 0.00 block523289 TACACAGTATTAGCAGCTCA #rat_gr741657_libT2S1 20 1 block523289 cttgagcacagccatgattgtcagtgctgttgtacttcagtgtggTACACAGTATTAGCAGCTCAaggttctcagga ***************************************************************************** block523289 ((((((...((((.((((((..(((((((.((((((.......)))))))))))))..))).))).)))))))))). 1.000 -30.70 # #block523289 chromosome:16:16687800:16687876:-1 intergenic ========== block523793 [novel_randfoldOK] ========== #randfold block523793: 0.001 #forester #identity: 0.00 block523793 TGGTCTATATACGTGTGCAGA #rat_gr1064597_libT3S1 21 1 block523793 tgccttgcatatatatgTGGTCTATATACGTGTGCAGAcacctgtttgtttacatgtgtggatacccatatatatctataggagcat *************************************************************************************** block523793 (((((((.(((((((((.(((...(((((((((((((((....))))))..)))))))))...))))))))))))...)))).))). 1.000 -31.60 # #block523793 chromosome:16:17783057:17783143:-1 intergenic ========== block525384 [novel_randfoldOK] ========== #randfold block525384: 0.004 #forester #identity: 0.00 block525384 CACCTGTGGCTTAAGGGGAAC #rat_gr281788_libT3S1 21 1 block525384 tcactcagagtgtCACCTGTGGCTTAAGGGGAACagctttgtataggctacagttagcctggcttgtggctggctcttagtgactcctgggttataatatctttgagtg ************************************************************************************************************* block525384 .((((((((((((.((((((.((.((((((...(((((.....(((((((....)))))))......))))).)))))))).))....)))).)))....))))))))) 0.690 -39.60 # #block525384 chromosome:16:19893045:19893153:-1 intergenic ========== block525506 [novel_randfoldOK] ========== #randfold block525506: 0.001 #forester #identity: 0.00 block525506 CCGTGCTTGAGGCAGGTTCTC #rat_gr369717_libT5S1 21 2 block525506 ttcatttgtgtatgtgaatggcatcagaggacagcctcgggtactggtgtccctcttccaCCGTGCTTGAGGCAGGTTCTCtcttgttttccactgtgac **************************************************************************************************** block525506 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000014265 ENSRNOG00000010736 NP_001101869.1 block525506 .((((..(((.....(((.((((..(((((((.(((((((((((.((((.........)))))))))))))))..)))))))..)))))))))).)))). 0.970 -39.60 # #block525506 chromosome:16:20046149:20046248:-1 Same_strand|Intronic_coding|ENSRNOT00000014265|ENSRNOG00000010736 ## ENSRNOG00000010736|protein_coding|NP_001101869.1|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 4 [Source:RefSeq_peptide;Acc:NP_001101869] ========== block525784 [novel_randfoldOK] ========== #randfold block525784: 0.003 #forester #identity: 0.00 block525784 TTAGAGGTCTAGAGGAAGGT #rat_gr1102592_libT1S2 20 1 block525784 cattatgtgtaataattatatctgaacttcctctttcctaatgatgaaaTTAGAGGTCTAGAGGAAGGTagttagctacatgttg ************************************************************************************* block525784 ....(((((((.(((((((.......((((((((.(((((((......))))).))...)))))))))))))))..))))))).. 0.970 -22.61 # #block525784 chromosome:16:20587230:20587314:-1 intergenic ========== block526994 [novel_randfoldOK] ========== #randfold block526994: 0.001 #forester #identity: 0.00 block526994 AGCTGTTCCATGTTCCTGAG #rat_gr167432_libT2S1 20 1 block526994 acgcagtaataagtttcacaAGCTGTTCCATGTTCCTGAGccgaaaccatgaccctgttttagttctcagacatggtcttacaaaatagtttgtcctgaacttgtacttactctgt ******************************************************************************************************************** block526994 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000018543 ENSRNOG00000013541 Sh2d4a block526994 (((.((((((((((((.(((((((((((((((((...((((..((((.........))))..))))...)))))))........))))))))))...))))))))...)))).))) 1.000 -31.90 # #block526994 chromosome:16:22979080:22979195:-1 Same_strand|Intronic_coding|ENSRNOT00000018543|ENSRNOG00000013541 ## ENSRNOG00000013541|protein_coding|Sh2d4a|SH2 domain-containing protein 4A. [Source:UniProtKB/Swiss-Prot;Acc:Q6AYC8] ========== block529551 [novel_randfoldOK] ========== #randfold block529551: 0.008 #forester #identity: 0.00 block529551 CTCCTAAGAGGTAGCGTCCAAC #rat_gr425028_libT4S1 22 1 block529551 ccttgtctgcagggatgcagggcctcagaggaagggcctgagacCTCCTAAGAGGTAGCGTCCAACacctgaggc *************************************************************************** block529551 (((((..((...((((((...(((((..(((.(((........))))))..))))).))))))..))..))))). 0.740 -30.60 # #block529551 chromosome:16:27975650:27975724:-1 intergenic ========== block531563 [novel_randfoldOK] ========== #randfold block531563: 0.010 #forester #identity: 0.00 block531563 GCATTGCACTGGGGTTTTCT #rat_gr538758_libT5S2 20 1 block531563 tcattttttagttaaagagcaggaatcccagattgcgtgtaatctgGCATTGCACTGGGGTTTTCTgaaactgatacattagtgag ************************************************************************************** block531563 (((((..((((((..(((....(((((((((..(((((((......)))).)))))))))))))))..))))))......))))). 0.980 -25.10 # #block531563 chromosome:16:32933760:32933845:-1 intergenic ========== block533865 [novel_randfoldOK] ========== #randfold block533865: 0.001 #forester #identity: 0.00 block533865 ACCATATCAATGCAGCCATTT #rat_gr92473_libT5S2 21 1 block533865 ttcttgtcctggagttcctgggacaaggttgcaACCATATCAATGCAGCCATTTcagtaccaaggatgtctgacttgatatatgtttttctgtcctggggttcccaggacaaggac ******************************************************************************************************************** block533865 ((((((((((((...(((..(((((.((..(((...(((((((..(((.(((((.........))))).)))..))))))).)))..)).)))))..)))...)))))))))))). 0.550 -48.90 # #block533865 chromosome:16:38860816:38860931:-1 intergenic ========== block537991 [novel_randfoldOK] ========== #randfold block537991: 0.008 #forester #identity: 0.00 block537991 ATCACCCAAACCCTTGTAGTTC #rat_gr215564_libT3S2 22 1 block537991 caatgaaaattattagcgtgactcagaaATCACCCAAACCCTTGTAGTTCaccaaagttaagaactgatgatctgcaatgggtcgggttaagaatgtggagcagctaaaaggaaccattg ************************************************************************************************************************ block537991 (((((....((.(((((.((.(((.....((((((..((((((((((.(((....(((.....)))..))).)))))).)))).))))...)).....)))))))))).))....))))) 0.990 -32.60 # #block537991 chromosome:16:49102279:49102398:-1 intergenic ========== block542083 [novel_randfoldOK] ========== #randfold block542083: 0.003 #forester #identity: 0.00 block542083 TCTTCTCTCTCTGAATTCTC #rat_gr913360_libT4S1 20 1 block542083 gctagctaaagcttTCTTCTCTCTCTGAATTCTCctcacttctggattattcttgatctgggagacatctccttttgctctgcc ************************************************************************************ block542083 ((.(((.((((......((((((((.((((..(((........)))..))))..))...))))))......)))).)))..)). 0.730 -19.90 # #block542083 chromosome:16:59770222:59770305:-1 intergenic ========== block542833 [novel_randfoldOK] ========== #randfold block542833: 0.004 #forester #identity: 0.00 block542833 TGGGGGTTGGGGGGATACCC #rat_gr1046850_libT1S1 20 1 block542833 gcccccttcccaatcctggatggtgttctcttggcatttcctcaactcagaaatctaagagggacTGGGGGTTGGGGGGATACCCaggggatagctgcagatttggggtttgtggt ******************************************************************************************************************** block542833 (((....((((((..(((...(((..((((((((.((..(((((((((.....(((.....)))....)))))))))..))..))))))))..))).)))..)))))).....))) 0.410 -44.20 # #block542833 chromosome:16:61480035:61480150:-1 intergenic ========== block543351 [novel_randfoldOK] ========== #randfold block543351: 0.006 #forester #identity: 0.00 block543351 AACGGACAGCTTTGTCACTGGG #rat_gr36566_libT2S1 22 1 block543351 cgttaaccAACGGACAGCTTTGTCACTGGGgagacagtgggaacatctcaggaccactgttgtccgtggtatatgg **************************************************************************** block543351 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000020663 ENSRNOG00000015182 Ppp2cb block543351 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000046640 ENSRNOG00000015182 Ppp2cb block543351 (((..(((.(((((((((...(((.(((((......(((....)))))))))))....))))))))))))..))). 0.970 -29.50 # #block543351 chromosome:16:62340822:62340897:-1 Same_strand|Intronic_coding|ENSRNOT00000046640|ENSRNOG00000015182 ## ENSRNOG00000015182|protein_coding|Ppp2cb|Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (EC 3.1.3.16) (PP2A-beta). [Source:UniProtKB/Swiss-Prot;Acc:P62716] ========== block546618 [novel_randfoldOK] ========== #randfold block546618: 0.003 randfold human146p22_block546618: 0.002 #forester human146p22_block546618: 0.322372 #identity: 67.27 block546618 TCACTTGCTCTGCGAGCCCTAC #rat_gr815545_libT1S2 22 1 block546618 TCACTTGCTCTGCGAGCCCTAC #rat_gr815545_libT4S2 22 1 block546618 TCACTTGCTCTGCGAGCCCTA #rat_gr815544_libT3S2 21 1 block546618 TTCACTTGCTCTGCGAGCCCT #rat_gr1111513_libT3S2 21 1 block546618 TCACTTGCTCTGCGAGCCC #rat_gr815543_libT3S2 19 1 block546618 TTGAGTCAAGCTGTCTTGAGTCAGGCTTGGAGAGCAGAGGGGGGTAGGGTTATCTTCACTTGCTCTGCGAGCCCTACTCTATTTTTAATTCTCAAA human146p22 CCAGGGCATAT--CCCTGAG-------CAGAAAGTGGAG-------------CCTTCACTTGCTCTGGGAACCCTAC------------------- * ** * **** ** ** *** ************** ** ****** block546618 (((((............((((..((((((.(((((((..(((((((....)))))))..))))))).))))))..))))...........))))). 0.940 -37.20 # human146p22 ..((((....( (((.((( ((...((((((. ..))))))))))).)))).)))).. 1.000 -22.60 # #block546618 chromosome:16:70731459:70731554:-1 intergenic #human146p22 chromosome:16:65446410:65446545:1 intergenic ========== block547854 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block547854: 0.003 #forester #identity: 0.00 block547854 TGGGGTTTCGGGGGGCAC #rat_gr1056787_libT4S2 18 11 block547854 TGGGGTTTCGGGGGGCAC #rat_gr1056787_libT1S2 18 4 block547854 TGGGGTTTCGGGGGGCAC #rat_gr1056787_libT2S1 18 3 block547854 TGGGGTTTCGGGGGGCAC #rat_gr1056787_libT5S2 18 3 block547854 TGGGGTTTCGGGGGGCACA #rat_gr1056788_libT1S1 19 2 block547854 TGGGGTTTCGGGGGGCACA #rat_gr1056788_libT5S1 19 1 block547854 TGGGGTTTCGGGGGGCAC #rat_gr1056787_libT1S1 18 1 block547854 tccaggagccgaTGGGGTTTCGGGGGGCACagggcaggggcaggaaacaggagcaaggcctgggtcagaatgcttcgccttccagtctgtgtctccctggcacagcactcctggaa ******************************************************************************************************************** block547854 ((((((((....((..(((..((((((((((((((.((((((.((..((((.......))))..))....))))))))).......))))))))))).))).))...)))))))). 0.820 -55.51 # #block547854 chromosome:16:73507532:73507647:-1 intergenic ========== block548166 [novel_randfoldOK] ========== #randfold block548166: 0.009 randfold mouseZ10p22_block548166: 0.023 #forester mouseZ10p22_block548166: 0.646161 #identity: 92.86 block548166 TGGCCTGTCTCATTTAACACACCT #rat_gr1012950_libT1S1 24 1 block548166 AAGGAAACGGTGGGTTGGAAGGGAGAAGAGGGGCCACCTCTGGTTATAAATAGTGTCGGAAAAGCATGCTGGTCAGACCTGGCCTGTCTCATTTAACACACCTTCCTT mouseZ10p22 ---GAAACAGTGGGCTGGGAGGGAGAAGAGGGGCCACGTCTGGTTATAAATAGTTTCGGAAGAGTATGCTGGTCAGACCTGGCCTGTCTCATTTAACACAC------- ***** ***** *** ****************** **************** ****** ** ************************************ block548166 ((((((..((((.((((((...((((....((((((..((((..((......((((.......))))..))..))))..)))))).)))).)))))).)))))))))) 0.900 -37.30 # mouseZ10p22 ......(((.....(((..((((....((((((.(((((..((...(((..(((....))))))..))..))))).)))))).)))).)))..))).. 0.364 -31.50 # #block548166 chromosome:16:73891869:73891976:-1 intergenic #mouseZ10p22 chromosome:8:23734400:23734547:1 Same_strand|Boundary_non-coding|ENSMUST00000033936|ENSMUSG00000031535|protein_coding|dickkopf homolog 4 (Xenopus laevis) Gene [Source:MGI Symbol;Acc:MGI:2385299] ========== block549822 [novel_randfoldOK] ========== #randfold block549822: 0.001 #forester #identity: 0.00 block549822 AGATATTTCTATTTATCATC #rat_gr146797_libT4S2 20 1 block549822 tatctatAGATATTTCTATTTATCATCaatctaaaggtatctataatgtctaaagatagatagagatagatagatgatggatgatagataggtgagagatatagatatagatat ****************************************************************************************************************** block549822 ((((((((.((((((((((((((((((.(((((....(((((((..((((((....))))))...))))))).....)))))))).))))))).))))))))...)))))))). 1.000 -36.60 # #block549822 chromosome:16:78648687:78648800:-1 intergenic ========== block550377 [novel_randfoldOK] ========== #randfold block550377: 0.001 randfold human228p22_block550377: 0.001 #forester human228p22_block550377: 0.304281 #identity: 60.00 block550377 ACAGGCAGAGGATTTAGTCA #rat_gr80300_libT5S2 20 1 block550377 AGATGTCAGCGTCCAGGGACAGGCAGAGGATTTAGTCACATGTGAATTAGTCACAGTTCTCTGTGATCAGAACTCTGAGTCTTCCCTGGGCCTTGGCATC human228p22 ------------------ACAGGCAGAGGATTT------GTATGGTTTACT---------------------CCTTAAGTCCATACCACTCTCTGCTCCC *************** * ** *** * * * **** * * ** * block550377 -------------------------------------------------------------------------------------------------------------- #ENSRNOT00000057857 ENSRNOG00000038026 block550377 .((((((((.(((((((((.((((((((..(((.(((((((((((.....)))))......)))))).))).))))..))))))))))))).)))))))) 0.730 -45.10 # human228p22 ...((((((((.... ((((((((((.. ...)))).))))))...))))))))... 1.000 -18.30 # #block550377 chromosome:16:80180594:80180693:-1 Opposite_strand|Intronic_coding|ENSRNOT00000057857|ENSRNOG00000038026 ## ENSRNOG00000038026|protein_coding|| #human228p22 chromosome:2:113653275:113653414:-1 Opposite_strand|Intronic_non-coding|ENST00000245796|ENSG00000125637|protein_coding|PH and SEC7 domain-containing protein 4 (Pleckstrin homology and SEC7 domain-containing protein 4)(Exchange factor for ADP-ribosylation factor guanine nucleotide factor 6B)(Telomeric of interleukin-1 cluster protein) [Source:UniProtKB/Swiss-Prot;Acc:Q8NDX1] ## Opposite_strand|Boundary_non-coding|ENST00000409656|ENSG00000125637|protein_coding|PH and SEC7 domain-containing protein 4 (Pleckstrin homology and SEC7 domain-containing protein 4)(Exchange factor for ADP-ribosylation factor guanine nucleotide factor 6B)(Telomeric of interleukin-1 cluster protein) [Source:UniProtKB/Swiss-Prot;Acc:Q8NDX1] ========== block550898 [novel_shortStem_mirtron_randfoldOK] ========== #randfold block550898: 0.009 #forester #identity: 0.00 block550898 TGTTGGGTTGCGTTTGCTCT #rat_gr1093289_libT1S2 20 1 block550898 tcttgggcagcgtctccttagcatgcattctcatggagttgTGTTGGGTTGCGTTTGCTCTaggt ***************************************************************** block550898 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> #ENSRNOT00000057726 ENSRNOG00000019629 Lamp1 block550898 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>> #ENSRNOT00000026580 ENSRNOG00000019629 Lamp1 block550898 (((.(((((((((..((.(((((((.((((.....)))))))))))))..))))).)))).))). 1.000 -22.10 # #block550898 chromosome:16:81220956:81221020:-1 Same_strand|Intronic_coding|ENSRNOT00000026580|ENSRNOG00000019629 ## ENSRNOG00000019629|protein_coding|Lamp1|lysosomal-associated membrane protein 1 Gene [Source:MGI Symbol;Acc:MGI:96745] ========== block551082 [novel_randfoldOK] ========== #randfold block551082: 0.001 #forester #identity: 0.00 block551082 TGCTCACTGTGTGCACTCACTG #rat_gr972076_libT1S2 22 2 block551082 ctgtgtgcactgactgtgtgcagttactgtgTGCTCACTGTGTGCACTCACTGtggcactcactgtgtgctcactgtgtgctcactgtggcactcactgtgtgcggttcaggcctatagc ************************************************************************************************************************ block551082 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000043170 ENSRNOG00000028426 Mcf2l block551082 (((((.((.(((((((..(((((....((.((((.(((.(((.((((.((..(((((((.......)))).))))).)))).))).))))))).)))))))..)))).))))).))))). 1.000 -54.50 # #block551082 chromosome:16:81456882:81457001:-1 Same_strand|Boundary_non-coding|ENSRNOT00000023352|ENSRNOG00000028426 ## Same_strand|Intronic_coding|ENSRNOT00000043170|ENSRNOG00000028426 ## ENSRNOG00000028426|protein_coding|Mcf2l|Guanine nucleotide exchange factor DBS (DBL's big sister) (MCF2- transforming sequence-like protein) (OST oncogene) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q63406] ## {Repeats: trf 52 74 0 class=trf,dust 81456949 81456971 0 class=dust} ========== block552135 [novel_randfoldOK] ========== #randfold block552135: 0.009 randfold human235p22_block552135: 0.009 #forester human235p22_block552135: 0.317086 #identity: 76.79 block552135 TCTGCTCCTGCTCAAGCCTTCA #rat_gr906742_libT3S2 22 1 block552135 CCCAGGCGGATTGAAGAGACAATGTAGCTTTCTCAGGGCTGGAGGGAGTAAGAGGCGTTTGCCCTCTGCTCCTGCTCAAGCCTTCAAAGAAGGCAGCCTCCTCATCGCTGG human235p22 ---AGGGGGAGTGA------------------------CAGGAGACCCCAAGATGC---TGCAGTCTGCTCCTGCTCAAGCC-------------------------CCAG *** *** *** * **** **** ** *** ****************** * * block552135 .(((.((((..(((.(((.....((.(((((((.((((((.((((((((.((((((....))).))))))))..))).))))))...))))))).))))).)))))))))) 0.990 -44.80 # human235p22 ..((((..((( ((((((......((((.. ....)))).)))))).)))..)) )).. 1.000 -25.10 # #block552135 chromosome:16:83398148:83398258:-1 intergenic #human235p22 chromosome:6:13700558:13700708:-1 Opposite_strand|Intronic_non-coding|ENST00000359782|ENSG00000124523|protein_coding|NAD-dependent deacetylase sirtuin-5 (EC 3.5.1.-)(SIR2-like protein 5) [Source:UniProtKB/Swiss-Prot;Acc:Q9NXA8] ## Opposite_strand|Intronic_coding|ENST00000379262|ENSG00000124523|protein_coding|NAD-dependent deacetylase sirtuin-5 (EC 3.5.1.-)(SIR2-like protein 5) [Source:UniProtKB/Swiss-Prot;Acc:Q9NXA8] ## {Repeats: trf 0 class=trf} ========== block554903 [novel_randfoldOK] ========== #randfold block554903: 0.002 #forester #identity: 0.00 block554903 CCCTGATTTCCCAACCTGGTGTG #rat_gr361836_libT5S1 23 1 block554903 ggacaaggctgtgcccaaaagctcaaaacaacccaggtcggggaatctggaggcttggctccaggccCCCTGATTTCCCAACCTGGTGTGgtgcccttgatcc ******************************************************************************************************* block554903 ((((((((..(((((...............((((((((.((((((((.((.((((((....)))))).)).)))))))).)))))).)))))))))))).))) 0.500 -50.66 # #block554903 chromosome:16:1106073:1106175:1 intergenic ========== block556872 [novel_randfoldOK] ========== #randfold block556872: 0.004 #forester #identity: 0.00 block556872 GCCGCCACGGGCGCGACTCTC #rat_gr552567_libT5S2 21 1 block556872 tgtccttggccgccacggctcgcgcctcgcccggcccactgcggccgctgagttctttacaactccgcagtccGCCGCCACGGGCGCGACTCTCgggtggccccgggcg ************************************************************************************************************* block556872 .((((..(((((((.(((.(((((((.((..((((..(((((((......((((......)))))))))))..))))...)))))))))...))))))))))..)))). 1.000 -58.40 # #block556872 chromosome:16:5059913:5060021:1 intergenic ## {SimpF: oe = 0.78 0 CpG} ========== block557532 [novel_randfoldOK] ========== #randfold block557532: 0.006 #forester #identity: 0.00 block557532 CCTGTGTGCTTTGTTTCCCATGA #rat_gr382035_libT2S2 23 1 block557532 caggcttgcactgctgctCCTGTGTGCTTTGTTTCCCATGAgatctctgtggtaggctctgtcttgtggggaatgaggtccacagctgcctctgacttcagtgaagtgtttga ***************************************************************************************************************** block557532 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000023632 ENSRNOG00000017381 Itih4 block557532 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061294 ENSRNOG00000017381 Itih4 block557532 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000048344 ENSRNOG00000017381 Itih4 block557532 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ #ENSRNOT00000061292 ENSRNOG00000017381 Itih4 block557532 (((((...(((((..((..(((((..(((..(((((((..((((....((.....))...))))..)))))))..)))..)))))..)).........)))))....))))). 0.850 -42.80 # #block557532 chromosome:16:6320633:6320745:1 Same_strand|Intronic_coding|ENSRNOT00000061294|ENSRNOG00000017381 ## ENSRNOG00000017381|protein_coding|Itih4|inter-alpha-inhibitor H4 heavy chain [Source:RefSeq_peptide;Acc:NP_062242] ========== block558569 [novel_randfoldOK] ========== #randfold block558569: 0.002 randfold mouseZ19p22_block558569: 0.127 #forester mouseZ19p22_block558569: 0.390019 #identity: 83.75 block558569 CTGCTTGCTTTTGTCTTTTCT---------C #rat_gr445732_libT5S1 22 1 block558569 AAGCTGAACAGTGACCAGACCAAGGGCTTACACTAGATTCTCCTGACTTCTGCTTGCTTTTGTCTTTTCT---------CTGTTCTGCT mouseZ19p22 AAGCTGAACAGTGACCAAGCCAAGGGCTTTAACCAGATTCTCCTGACTTGTGCTTGCTCTTGTCTTTTCTGCTCACTTCTTTCCTTGCC ***************** ********** ** *************** ******** *********** * *** block558569 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++ #ENSRNOT00000027071 ENSRNOG00000019978 Parg block558569 .(((.((((((.((..(((.(((((((......((((.((....))..))))...))))))))))..)). )))))).))) 1.000 -24.90 # mouseZ19p22 ..((.(((.(((((.((((.(((((((....(((((......)))....))....))))))).))....)).)))))...)))...)). 0.989 -18.30 # #block558569 chromosome:16:7777418:7777497:1 Same_strand|Intronic_coding|ENSRNOT00000027071|ENSRNOG00000019978 ## ENSRNOG00000019978|protein_coding|Parg|Poly(ADP-ribose) glycohydrolase (EC 3.2.1.143). [Source:UniProtKB/Swiss-Prot;Acc:Q9QYM2] #mouseZ19p22 chromosome:14:33091196:33091284:1 Same_strand|Intronic_coding|ENSMUST00000022470|ENSMUSG00000021911|protein_coding|poly (ADP-ribose) glycohydrolase Gene [Source:MGI Symbol;Acc:MGI:1347094] ## {Repeats: T-rich 1 class=Low_complexity} ========== block559492 [novel_lenNOK_cloningOK_randfoldOK] ========== #randfold block559492: 0.005 #forester #identity: 0.00 block559492 TGGAATGCGGGGGGGGGG #rat_gr988221_libT4S1 18 15 block559492 TGGAATGCGGGGGGGGGG #rat_gr988221_libT4S2 18 13 block559492 TGGAATGCGGGGGGGGGGG #rat_gr988222_libT4S1 19 4 block559492 TGGAATGCGGGGGGGGGGG #rat_gr988222_libT4S2 19 3 block559492 TGGAATGCGGGGGGGGGGGC #rat_gr988223_libT4S2 20 1 block559492 acctcactgctcatccctcagaatgttccacgagaatcatttTGGAATGCGGGGGGGGGGgcgggggg ******************************************************************** block559492 .((((.((((((..(((((....(((((((.((......)).)))))))..)))))..)))))))))) 1.000 -30.70 # #block559492 chromosome:16:9795546:9795613:1 intergenic ## {Repeats: dust 9795602 9795613 0 class=dust,GC_rich 1 14 1 class=Low_complexity,GC_rich 1 21 1 class=Low_complexity} ========== block563617 [novel_mirtron_randfoldOK] ========== #randfold block563617: 0.004 #forester #identity: 0.00 block563617 AAGCTCACCCCGCTTGTCCCCTCA #rat_gr48041_libT1S2 24 1 block563617 ctgaacacagcttcatacagctggggtccaggggcgtggctggcatgaaatagacaggtgtcAAGCTCACCCCGCTTGTCCCCTCAgccgacacagctgttctcag ********************************************************************************************************** block563617 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000037756 ENSRNOG00000022753 LOC684053 block563617 ((((..((((((.......(((((((..((((((.(((((((((((...........)))))).)).))).)).))))..))).))))......))))))..)))) 1.000 -42.52 # #block563617 chromosome:16:19165565:19165670:1 Same_strand|Intronic_coding|ENSRNOT00000037756|ENSRNOG00000022753 ## Same_strand|Boundary_non-coding|ENSRNOT00000037749|ENSRNOG00000022753 ## ENSRNOG00000022753|protein_coding|LOC684053| ========== block563652 [novel_randfoldOK] ========== #randfold block563652: 0.004 randfold mouse8p23_block563652: 0.132 #forester mouse8p23_block563652: 0.332515 #identity: 65.62 block563652 AGGACCTGTGGTGAGAGCGGT #rat_gr172257_libT3S2 21 1 block563652 CGTCCTG----------------------AGACTGGCCAGGACCTGTGGTGAGAGCGGTGCT-----CAGCGGTAGGAAGAGGCACAGCTCTCTC------CGTGGGTTCACAGCCTGAG-------GTCAGCGGGGACA mouse8p23 AGACCTGTCGGGAACAGAGATGTGGACCTAGGCTG---AGGACCTGTGGTGAGAA-GATGCCCTTAGCAGGGACACGAACTCCCATTTCTCCCTCAAGCATTGCTGGGCTACAGGCTGAACAGGATTTTTAAGAGGGTCT * **** ** *** **************** * *** *** * * *** ** *** *** * ** **** **** * * *** * block563652 <<<<<<<<<<<< <<<<<<<<<<<<<<------------------- ---------------------------- ------------------- ------------------ #ENSRNOT00000026457 ENSRNOG00000019518 Dpde1 block563652 .(((((. .(((((((..(((((..(((.((((((.((((( (...........))).))).)))))).) ))..)))))...)))...) )))....))))). 0.730 -47.40 # mouse8p23 ((((((.((..((((((...(((((.((((((((( (((....((((.(((.. ..((((((....)))).))....))))))).....))))).))....))))))))))..))).........)))..)))))))) 0.904 -44.40 # #block563652 chromosome:16:19201410:19201509:1 Opposite_strand|Boundary_coding|ENSRNOT00000026457|ENSRNOG00000019518 ## ENSRNOG00000019518|protein_coding|Dpde1|cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC 3.1.4.17) (DPDE1) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P14644] #mouse8p23 chromosome:2:93805299:93805434:-1 intergenic ========== block563993 [novel_randfoldOK] ========== #randfold block563993: 0.003 #forester #identity: 0.00 block563993 GCAAAAACAAGCAGAGCAGCCC #rat_gr525409_libT4S2 22 1 block563993 cctgagtgacaggatactgaacagtGCAAAAACAAGCAGAGCAGCCCacagtgctgcttaggaaactgagcatgctcagtgccgatgctctttgtatttggcctggtgcctgctcag ********************************************************************************************************************* block563993 .(((((...((((.(((....(((..((((.((((..((((((...(((...(((((((((....))))))).))...)))....)))))))))).))))..))))))))))))))) 0.480 -45.20 # #block563993 chromosome:16:19707856:19707972:1 intergenic ========== block564106 [novel_cloningOK_mirtron] ========== #randfold block564106: 0.270 randfold mouseZ3p23_block564106: 0.026 #forester mouseZ3p23_block564106: 0.974852 #identity: 98.31 block564106 CTTCCTTAACTGAACTTCTC #rat_gr462492_libT5S2 20 3 block564106 CTTCCTTAACTGAACTTC #rat_gr462491_libT1S2 18 2 block564106 CTTCCTTAACTGAACTTCTCCAGA #rat_gr462493_libT3S2 24 2 block564106 ACTTCCTTAACTGAACTTCTC #rat_gr128971_libT2S2 21 1 block564106 CTTCCTTAACTGAACTTCTCCAGA #rat_gr462493_libT1S2 24 1 block564106 TTCCTTAACTGAACTTCTCC #rat_gr1122472_libT5S2 20 1 block564106 GCATTGTACTTCCTTAACTGAACTTCTCCAGATCCCGCAGTTTGAAGATGTTAAATTTGAGGCAGCGAGCC mouseZ3p23 -------ACTTCCTTAACTGAACTTCTCCAGATCCCACAGTTTGAAGATGTTAAATTTGAGGCAGC----- ***************************** ***************************** block564106 ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> #ENSRNOT00000027846 ENSRNOG00000020526 NP_001099547.1 block564106 ((.((((....((((((...(((.(((.(((((......))))).))).)))....))))))..)))))). 1.000 -15.20 # mouseZ3p23 .((.((((((...(((.(((.(((((......))))).))).)))....)))))).)). 1.000 -13.10 # #block564106 chromosome:16:19878034:19878104:1 Same_strand|Boundary_coding|ENSRNOT00000027846|ENSRNOG00000020526 ## ENSRNOG00000020526|protein_coding|NP_001099547.1| #mouseZ3p23 chromosome:8:72557084:72557194:-1 Same_strand|Boundary_coding|ENSMUST00000050561|ENSMUSG00000031858|protein_coding|RIKEN cDNA 9130404D08 gene Gene [Source:MGI Symbol;Acc:MGI:1921799] ========== block565291 [novel_randfoldOK] ========== #randfold block565291: 0.007 #forester #identity: 0.00 block565291 TTCCTGTCGGTGCTCTCACCCTCA #rat_gr1122259_libT3S2 24 1 block565291 aagccagggaactcggagcgggtagagcaatcgtcaggagcccacttagcccatgggaaggTTCCTGTCGGTGCTCTCACCCTCAgtccacccaagtgaccgaaaagct ************************************************************************************************************* block565291 ----------------------------------------------------------------------------------------------------------------------- #ENSRNOT00000015931 ENSRNOG00000011891 Atp6v1b2 block565291