candidate novel miRNAs
block1470218_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1470218_cand 5arm | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 15 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1470218_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0.001 | 0 |
block1470218 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.108 | no | no | 0.44/0.48 | 18/23/0.83 | 0.0 | 0.0 | 8 | 0 | 3 | 0 | 17 | 1 | 5arm | 1 | nd | 0.19 | 1 | 18 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------AUCAAUG----------------------------------------------------------- | 13 | novel | ||
| seed | ---------GGGGAGA-------------------------------------------------------------------- | 3 | novel | ||
| seed | ---------------ACUAUCA-------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------UAUCAAU------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| -----------------TATCAATGGATCTGCAGGCTG---------------------------------------------- | 21 | 2 | 1 | 8 | |
| --------TGGGGAGACTATCAATGGATCTG----------------------------------------------------- | 23 | - | - | 2 | |
| -----------------TATCAATGGATCTGCAGG------------------------------------------------- | 18 | - | - | 1 | |
| --------TGGGGAGACTATCAATGGA--------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------CTATCAATGGATCTGCAG-------------------------------------------------- | 18 | - | - | 1 | |
| --------------GACTATCAATGGATCTGCAG-------------------------------------------------- | 20 | - | - | 1 | |
| -----------------TATCAATGGATCTGCAGGCT----------------------------------------------- | 20 | - | - | 1 | |
| rat | cggtgtcttggggagacTATCAATGGATCTGCAGGCTGcaaggggcagctgctgagtatcacttggacgtgctccagcgatact | ||||
| ************************************************************************************ | |||||
| rat | .((((((((((((..((..(((((((.((.(((.(((((.....)))))))).))...))).))))..)).)))))).)))))) | 0.970 -29.70 | |||
| rat | chromosome:3:76971812:76971895:1 | intergenic |
block1600561_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1600561_cand 5arm | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 8 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1600561_cand 5arm | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0 |
block1600561 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.922 | no | no | 0.55/0.68 | 19/24/0.70 | 0.6 0.0 | 1.6 0.0 | 9 1 | 0 0 | 2 1 | 0 0 | 17 23 | 6 5 | 5arm 5arm | 1 1 | nd nd | 0.33 0.26 | 3 2 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------CCAAGAC------------------------------------------------------------------------------ | 4 | novel | |
| seed | ------------------UCCAAGA------------------------------------------------------------------------------- | 4 | novel | |
| seed | --------------------CAAGACC----------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------ACCUAAG------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------TCCAAGACCTAAGGGGCAGGCAG--------------------------------------------------------------- | 23 | - | 3 | |
| -----------------TTCCAAGACCTAAGGGGCAGGCAG--------------------------------------------------------------- | 24 | 1 | 1 | |
| -----------------TTCCAAGACCTAAGGGGCAG------------------------------------------------------------------- | 20 | - | 1 | |
| -----------------TTCCAAGACCTAAGGGGCAGG------------------------------------------------------------------ | 21 | - | 1 | |
| ------------------TCCAAGACCTAAGGGGCAG------------------------------------------------------------------- | 19 | - | 1 | |
| -----------------------GACCTAAGGGGCAGGCAGC-------------------------------------------------------------- | 19 | - | 1 | |
| -------------------CCAAGACCTAAGGGGCAGG------------------------------------------------------------------ | 19 | 1 | - | |
| rat | tggagcagagggttgtaTTCCAAGACCTAAGGGGCAGGCAGCaaagggacatgactgactgtgattagccacccctggctcgtgaagctgaagctcgtgttgcc | |||
| ******************************************************************************************************** | ||||
| rat | ....((((.(((((...(((...((((..(((((..(((.(((..((.......))...))).....))).))))))).))..))).....)))))...)))). | 0.550 -26.60 | ||
| rat | chromosome:4:164242684:164242787:-1 | intergenic |
block1695814_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1695814_cand 3arm | 1 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 14 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1695814_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0 |
block1695814 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.140 | no | no | 0.39/0.48 | 18/22/0.94 | 0.5 0.0 | 0.0 0.0 | 13 1 | 0 0 | 4 1 | 0 0 | 22 14 | 4 13 | 3arm 3arm | 1 1 | nd nd | 0.36 0.19 | 8 2 | 18 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------GCCAAUU---------------------------------- | 14 | novel | |||
| seed | ---------------------------------------------------------AUGCCAA------------------------------------ | 3 | novel | |||
| seed | ------------------------------------------------------------------GAGUCUU--------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| ----------------------------------------------------------TGCCAATTGAGTCTTTCTCT---------------------- | 20 | 1 | 2 | - | 10 | |
| --------------------------------------------------------GATGCCAATTGAGTCTTTCTCT---------------------- | 22 | - | - | - | 3 | |
| ----------------------------------------------------------TGCCAATTGAGTCTTTCT------------------------ | 18 | - | - | 1 | - | |
| -----------------------------------------------------------------TGAGTCTTTCTCTTCCTTGCC-------------- | 21 | - | - | - | 1 | |
| rat | tgcattcaaagtgaggaagccaggaggaagatacctaaccatccatcactgttgcaGATGCCAATTGAGTCTTTCTCTtccttgcctctgcttcagtgtt | |||||
| **************************************************************************************************** | ||||||
| rat | .(((((..(((((((((((..(((((((((((.......((((((.......))..))))........))))))))))).))).)))).)))).))))). | 0.740 -24.66 | ||||
| rat | chromosome:4:164247655:164247754:1 | intergenic |
block1766848_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1766848_cand 5arm | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 8 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1766848_cand 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.001 | 0 |
block1766848 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.169 | no | no | 0.26/0.36 | 20/23/1.00 | 0.0 | 0.0 | 6 | 0 | 4 | 0 | 15 | 5 | 5arm_loop | 1 | nd | 0.27 | 3 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ----------------AGGAUUG---------------------------------------------------------------------- | 7 | novel | |||
| seed | ------------------------CCUUUUC-------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------UGUCCUU----------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------UAGGAUU----------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------GUCCUUU---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ---------------TAGGATTGTCCTTTTCATTTTT-------------------------------------------------------- | 22 | - | - | 1 | 6 | |
| ---------------------TGTCCTTTTCATTTTTAGAC---------------------------------------------------- | 20 | 1 | - | - | - | |
| --------------TTAGGATTGTCCTTTTCATTTTT-------------------------------------------------------- | 23 | - | - | - | 1 | |
| -----------------------TCCTTTTCATTTTTAGACCCAC------------------------------------------------ | 22 | - | 1 | - | - | |
| --------------------TTGTCCTTTTCATTTTTAGACCC-------------------------------------------------- | 23 | - | - | - | 1 | |
| rat | tgcttctttccagatTAGGATTGTCCTTTTCATTTTTagacccacgggatggtcttaatggagatatttcaatcttggcatgatcactgtggc | |||||
| ********************************************************************************************* | ||||||
| rat | .(((......((..(((((((((...((((((((...(((((........))))).)))))))).....)))))))))..))........))) | 0.530 -21.14 | ||||
| rat | chromosome:5:114545992:114546084:-1 | intergenic |
block1766977_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1766977_cand 3arm | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 10 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1766977_cand 3arm | 0.000 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0.001 | 0 |
block1766977 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.35/0.48 | 19/21/0.92 | 0.0 0.8 | 0.0 0.8 | 5 5 | 0 0 | 2 2 | 0 0 | 19 10 | 5 11 | 3arm 3arm | 1 1 | nd nd | 0.24 0.20 | 2 1 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------CACUGUG-------------------------------- | 7 | novel | ||
| seed | -----------------------------------------------------------GGUUGGU-------------------------- | 4 | novel | ||
| seed | ---------------------------------------------------------------GGUCUGA---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------------------------------------TCACTGTGGTTGGTCTGAACA------------------- | 21 | 1 | - | 5 | |
| ----------------------------------------------------------TGGTTGGTCTGAACATTTGA-------------- | 20 | - | 1 | 3 | |
| ----------------------------------------------------TCACTGTGGTTGGTCTGAA--------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TGGTCTGAACATTTGATATG---------- | 20 | - | - | 1 | |
| rat | cagatctttacattcagaagtactgtgggccaggtatggaattgtttcagtcTCACTGTGGTTGGTCTGAACATTTGAtatgggaaagttct | ||||
| ******************************************************************************************** | |||||
| rat | .(((.((((.((((((((.((....((((((((.(((((.((((...))))....))))).)))))))).)).))))).)))..)))).))) | 0.950 -21.00 | |||
| rat | chromosome:5:114554707:114554798:-1 | intergenic |
block1767095_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1767095_cand 3arm | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1767095_cand 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0.000 |
block1767095 [novel_cloningOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.910 | no | no | 0.42/0.53 | 18/23/0.75 | 0.0 1.0 | 0.0 1.3 | 1 12 | 0 0 | 1 3 | 0 0 | 40 24 | -4 6 | 3arm_loop 3arm | 1 1 | nd nd | 0.42 0.26 | 3 2 | 16 | 3 | na | na |
| Located in cluster 59: sblock9438_cand, block1767095_cand |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------ACUCAUC----------------------------------------- | 10 | novel | ||
| seed | -----------------------------------------------------------------CAAGACC----------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------GCAUACU--------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------UGCAUAC---------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------ACACUUG--------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------AUACUCA------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TACTCATCAAGACCTGTCTGGG--------------------------- | 22 | - | 5 | - | |
| ----------------------------------------------------------TACTCATCAAGACCTGTCTG----------------------------- | 20 | 3 | 2 | - | |
| ----------------------------------------------------------------TCAAGACCTGTCTGGGCAT------------------------ | 19 | - | 2 | - | |
| -----------------------------------------------------TTGCATACTCATCAAGACCTG--------------------------------- | 21 | - | 1 | - | |
| ------------------------------------------------------TGCATACTCATCAAGACCTGTCT------------------------------ | 23 | - | - | 1 | |
| --------------------------------------------------------CATACTCATCAAGACCTG--------------------------------- | 18 | - | 1 | - | |
| ------------------------------------------------CACACTTGCATACTCATCA---------------------------------------- | 19 | - | 1 | - | |
| rat | gggtccactgggagcttgtccttcagcaatgtattgtccgaatgctagcacacttgcaTACTCATCAAGACCTGTCTGGGCATaagctaaatcaaaaggtgaagtcc | ||||
| *********************************************************************************************************** | |||||
| rat | (((..((((((.((((((((((...(((..((.(((...((((((.((....)).))))..))..))).)).)))..))).)))))))...)))....)))...))) | 0.680 -20.80 | |||
| rat | chromosome:5:114558076:114558182:-1 | intergenic |
novel_lenNOK_cloningHIGH_randfoldOK (26 loci)
block41546_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block41546_cand 3arm | 169 | 98 | 13 | 12 | 47 | 23 | 72 | 82 | 46 | 27 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block41546_cand 3arm | 0.006 | 0.004 | 0.001 | 0.001 | 0.002 | 0.002 | 0.006 | 0.004 | 0.003 | 0.002 |
block41546 [novel_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.55/0.58 | 18/22/0.01 | 0.0 | 0.0 | 419 | 0 | 10 | 0 | 8 | 28 | 3arm | 1 | nd | 0.22 | 3 | 589 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------------------------------------------------GGAGAGC------------------ | 589 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------TGGAGAGCCCTTACTGGA-------- | 18 | 167 | 98 | 13 | 11 | 46 | 23 | 72 | 82 | 45 | 25 | |
| ---------------------------------------------------------------------------------------TGGAGAGCCCTTACTGGACAG----- | 21 | 1 | - | - | 1 | - | - | - | - | 1 | 1 | |
| ---------------------------------------------------------------------------------------TGGAGAGCCCTTACTGGAC------- | 19 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGGAGAGCCCTTACTGGACAGA---- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | gggttctggagaccaagggctctgtctaggcatgcaagaggcagccagctgtgagctgagcccacgtaggctggtatagtgcgtctcTGGAGAGCCCTTACTGGAcagagccc | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019037 ENSRNOG00000014099 Ka15 | |||||||||||
| rat | ((((((((....((((((((((..((((((.(((((.....(((((.((.(((.((...)).))))).)))))......))))).)))))))))))))...))).)))))))) | 0.990 -54.20 | ||||||||||
| rat | chromosome:10:89074564:89074676:-1 | Same_strand|Intronic_coding|ENSRNOT00000019037|ENSRNOG00000014099 ## ENSRNOG00000014099|protein_coding|Ka15|Keratin, type I cytoskeletal 15 (Cytokeratin-15) (CK-15) (Keratin-15) (K15) (Type I keratin Ka15). [Source:UniProtKB/Swiss-Prot;Acc:Q6IFV3] |
block72173_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block72173_cand 3arm | 5 | 10 | 2 | 2 | 5 | 5 | 3 | 4 | 6 | 18 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block72173_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 |
block72173 [novel_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.47/0.50 | 18/19/0.00 | 0.0 | 0.0 | 28 | 0 | 10 | 0 | 32 | 0 | 3arm | 1 | nd | 0.17 | 2 | 60 | 10 | na | na |
| Member of family miR-30a/30b/30c/30d/30e/384 (seed GUAAACA): rno-mir-30a, rno-mir-30c, rno-mir-384, rno-mir-30c, rno-mir-30b, rno-mir-30d, rno-mir-30e, block72173_cand, block948481_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------------------------------------GUAAACA------------------------------------------ | 60 | miR-30a/30b/30c/30d/30e/384 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------TGTAAACATCCCCAGCTG-------------------------------- | 18 | 5 | 10 | 2 | 2 | 4 | 4 | 2 | 4 | 5 | 18 | |
| -------------------------------------------------------TGTAAACATCCCCAGCTGT------------------------------- | 19 | - | - | - | - | 1 | 1 | 1 | - | 1 | - | |
| rat | atggtcacttctgagtgtgaggacagagggatgactctgggaagatgtttcagacTGTAAACATCCCCAGCTGttattgatggctgtcctacaggccataccatt | |||||||||||
| ********************************************************************************************************* | ||||||||||||
| rat | (((((......((.((.(((((((((...((((((.(((((..(((((((((...)).))))))))))))..)))))).....))))))).)).)))).))))). | 0.470 -36.20 | ||||||||||
| rat | chromosome:10:42612178:42612282:1 | intergenic |
block113823_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block113823_cand 3arm | 9 | 4 | 2 | 4 | 8 | 5 | 2 | 11 | 7 | 5 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block113823_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 |
block113823 [novel_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.32/0.33 | 18/19/0.00 | 0.0 | 0.1 | 45 | 0 | 10 | 0 | 17 | 9 | 3arm | 1 | nd | 0.22 | 2 | 57 | 10 | na | na |
| Member of family let-7a/7b/7c/7d/7e/7f/7i/miR-98 (seed GAGGUAG): rno-let-7a, rno-let-7f, rno-let-7e, rno-let-7a, rno-let-7f, rno-let-7d, rno-let-7c, rno-let-7b, rno-mir-98, rno-let-7c, rno-let-7i, block113823_cand, block2634835_cand |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------------GAGGUAG---------------------------- | 57 | let-7a/7b/7c/7d/7e/7f/7i/miR-98 | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------TGAGGTAGTAGGTTTATT------------------ | 18 | 7 | 4 | 2 | 3 | 5 | 5 | 2 | 9 | 6 | 3 | |
| ------------------------------------------------------------TGAGGTAGTAGGTTTATTT----------------- | 19 | 2 | - | - | 1 | 3 | - | - | 2 | 1 | 2 | |
| rat | agttcctttgtcatagctaaagttcatctactaatcattctaagcctattaaggcaaagaTGAGGTAGTAGGTTTATTTataaaatgtaaatgagc | |||||||||||
| ************************************************************************************************ | ||||||||||||
| rat | .((((.((((.(((.....((((..((((((((.(((.(((..((((....))))..))))))..))))))))..)))).....))))))).)))) | 0.930 -24.40 | ||||||||||
| rat | chromosome:11:21279062:21279157:-1 | intergenic |
block131510_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block131510_cand 5arm | 46 | 17 | 179.750 | 104.750 | 4.250 | 5 | 8 | 21.250 | 33 | 15.250 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block131510_cand 5arm | 0.002 | 0.001 | 0.010 | 0.006 | 0.000 | 0.000 | 0.001 | 0.001 | 0.002 | 0.001 |
block131510 [novel_lenNOK_cloningHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.56/0.61 | 18/22/0.02 | 0.0 | 0.0 | 512 | 0 | 10 | 0 | 24 | 13 | 5arm | 2 | nd | 0.21 | 1 | 877 | 10 | na | na |
| Member of family miR-31 (seed GGCAAGA): rno-mir-31, block131510_cand, block871208_cand |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------GGCAAGA------------------------------------------------------------------------------------ | 875 | miR-31 | |||||||||
| seed | ------------------------AGGCAAG------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------AGGCAAGATGCTGGCAGAG------------------------------------------------------------------------- | 19 | 91 | 33 | 326 | 186 | 8 | 10 | 13 | 42 | 63 | 29 | |
| ------------------------AGGCAAGATGCTGGCAGA-------------------------------------------------------------------------- | 18 | 2 | 2 | 23 | 19 | 1 | - | 2 | 1 | 2 | 3 | |
| ------------------------AGGCAAGATGCTGGCAGAGG------------------------------------------------------------------------ | 20 | - | - | 5 | 2 | - | - | - | - | - | - | |
| ------------------------AGGCAAGATGCTGGCAGAGGAG---------------------------------------------------------------------- | 22 | - | - | 3 | 3 | - | - | 1 | - | - | - | |
| ------------------------AGGCAAGATGCTGGCAGAGGA----------------------------------------------------------------------- | 21 | - | - | 2 | 2 | - | - | - | - | 1 | - | |
| -----------------------GAGGCAAGATGCTGGCAG--------------------------------------------------------------------------- | 18 | - | - | 2 | - | - | - | - | - | - | - | |
| rat | acatgctttattttacctgggcagAGGCAAGATGCTGGCAGAGgagggcgggtgcagcaaatggtccgtttctctgcctaccatgctcctggctttgctctcagaatgaaatgtgt | |||||||||||
| ******************************************************************************************************************** | ||||||||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000016438 ENSRNOG00000001706 Kalrn | |||||||||||
| rat | ((((..((((((((....((((((((.((.((.((.(((((((((..((((((.((.....)))))))))))))))))......)))).)).))))))))..))))))))..)))) | 1.000 -43.30 | ||||||||||
| rat | chromosome:11:68191464:68191579:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000016340|ENSRNOG00000001706 ## Opposite_strand|Intronic_coding|ENSRNOT00000016438|ENSRNOG00000001706 ## ENSRNOG00000001706|protein_coding|Kalrn|Kalirin (EC 2.7.11.1) (Huntingtin-associated protein-interacting protein) (Protein Duo) (Serine/threonine kinase with Dbl- and pleckstrin homology domain) (PAM COOH-terminal interactor protein 10) (P-CIP10). [Source:UniProtKB/Swiss-Prot;Acc:P97924] |
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