miR-Intess™

candidate novel miRNAs

novel_lenNOK_cloningHIGH_randfoldOK (26 loci)

block2659609_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2659609_cand 5arm	657	440	458	386	608	320	821	1302	899	1121
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block2659609_cand 5arm	0.022	0.019	0.025	0.023	0.030	0.024	0.064	0.069	0.059	0.075

block2659609 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.47/0.56

18/20/0.00

0.0

0.0

5664

0

10

0

9

13

5arm

1

nd

0.22

2

7012

10

na

na

Families

Member of family miR-23a/23b (seed UCACAUU): rno-mir-23b, rno-mir-23a, block2659609_cand

		reads	miRBase family seed
seed	----------UCACAUU-------------------------------------------------------------------	6384	miR-23a/23b
seed	-----------CACAUUG------------------------------------------------------------------	558	novel
seed	---------GUCACAU--------------------------------------------------------------------	69	novel
seed	------------ACAUUGC-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
	---------GTCACATTGCCAGGGATT---------------------------------------------------------	18	573	392	396	328	565	296	714	1175	816	1033
	----------TCACATTGCCAGGGATTG--------------------------------------------------------	18	67	39	44	45	32	15	79	82	54	61
	---------GTCACATTGCCAGGGATTG--------------------------------------------------------	19	4	2	13	6	4	5	11	15	16	10
	--------TGTCACATTGCCAGGGATT---------------------------------------------------------	19	4	2	3	2	5	1	8	13	3	11
	----------TCACATTGCCAGGGATTGG-------------------------------------------------------	19	7	1	1	2	1	-	5	9	8	5
	--------TGTCACATTGCCAGGGAT----------------------------------------------------------	18	-	2	1	2	1	1	3	4	2	1
	---------GTCACATTGCCAGGGATTGG-------------------------------------------------------	20	2	2	-	-	-	2	1	3	-	-
	-----------CACATTGCCAGGGATTGG-------------------------------------------------------	18	-	-	-	-	-	-	-	1	-	-
	----------TCACATTGCCAGGGATTGGT------------------------------------------------------	20	-	-	-	1	-	-	-	-	-	-
rat	gctgctcttGTCACATTGCCAGGGATTggtatggatatggaatactatgcctgactgaagccctggcaggtaccaagtagtcag
	************************************************************************************
rat	.(((((((((..((.(((((((((.(((((..((.(((((....)))))))..)))))..)))))))))))..)))).)).)))	1.000 -33.30

rat

chromosome:X:7251685:7251768:-1

intergenic

block3116946_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block3116946_cand 3arm	96	51	0	0	0	0	0	0	2	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block3116946_cand 3arm	0.003	0.002	0	0	0	0	0	0	0.000	0

block3116946 [novel_lenNOK_cloningHIGH_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.009

no

no

0.56/0.62

18/21/0.01

0.0

0.0

141

0

3

0

17

13

3arm

1

nd

0.22

2

149

3

na

na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------CUAGUAG---------------------------	149	miR-325
		len	cloning frequencies
			T1S1	T1S2	T5S1
	--------------------------------------------------------------------------CCTAGTAGGTGCTCAGTG-----------------	18	93	48	2
	--------------------------------------------------------------------------CCTAGTAGGTGCTCAGTGC----------------	19	3	2	-
	--------------------------------------------------------------------------CCTAGTAGGTGCTCAGTGCCC--------------	21	-	1	-
rat	tccttaaagaaataggtgactggtcagtgcctgattcctaggtgcggctgcagcactgcaagctgtgcgtgctaCCTAGTAGGTGCTCAGTGcccctatacttgttgga
	*************************************************************************************************************
rat	(((...(((..(((((..((((...((..((((....(((((((((((.(((((.......))))))).))).))))))))))..))))))...))))).)))...)))	0.990 -40.00

rat

chromosome:X:143078456:143078564:1

intergenic

novel_shortStem_mirtron_randfoldOK (20 loci)

block95750_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block95750_cand 5arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block95750_cand 5arm	0	0	0	0	0	0	0	0	0	0.000

block95750 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.002

no

no

0.57/0.57

21/21/1.00

0.0

0.0

1

0

1

0

0

15

5arm

1

4

0.00

0

1

1

na

na

		reads	miRBase family seed
seed	-CUCUGUC----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	CCTCTGTCTCCCTTTCCCTGT---------------------------------------------------------------	21	1
rat	CCTCTGTCTCCCTTTCCCTGTccagctacgcctcagatgcagcctcaggcctcagtgacatgggagaaggggggcaaatgagga
	************************************************************************************
	++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000027804 ENSRNOG00000020441 Wnk4
	++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000027770 ENSRNOG00000020441 Wnk4
rat	((((((((((((((((((((((..(((..((((.((.......)).))))...))))))).)))))).))))))))...)))).	1.000 -38.80

rat

chromosome:10:90298072:90298155:1

Same_strand|Boundary_non-coding|ENSRNOT00000027728|ENSRNOG00000020441 ## Same_strand|Intronic_coding|ENSRNOT00000027770|ENSRNOG00000020441 ## Same_strand|Intronic_non-coding|ENSRNOT00000027804|ENSRNOG00000020441 ## ENSRNOG00000020441|protein_coding|Wnk4|Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4). [Source:UniProtKB/Swiss-Prot;Acc:Q7TPK6]

block228766_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block228766_cand 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block228766_cand 3arm	0.000	0	0	0	0	0	0	0	0	0

block228766 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.008

no

no

0.57/0.57

23/23/1.00

0.0

0.0

1

0

1

0

3

5

3arm

1

4

0.17

2

1

1

na

na

Families

Member of family novel236 (seed CAGCUUC): sblock508_novel, block228766_cand

		reads	miRBase family seed
seed	-------------------------------------------------CAGCUUC------------------	1	novel
		len	cloning frequencies
			T1S1
	------------------------------------------------ACAGCTTCTCCCTTCTCTTCCCC---	23	1
rat	gtggggtaggtgaggaggcgggaggtggattcactgtgcctcgagatgACAGCTTCTCCCTTCTCTTCCCCaca
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000001773 ENSRNOG00000001309 Camkk2
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000001774 ENSRNOG00000001309 Camkk2
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000041200 ENSRNOG00000001309 Camkk2
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000001778 ENSRNOG00000001309 Camkk2
rat	((((((.....(((((((.(((((((....(((((........)).)))..))))))))))))))..)))))).	0.940 -33.80

rat

chromosome:12:34923482:34923555:1

Same_strand|Intronic_coding|ENSRNOT00000001774|ENSRNOG00000001309 ## ENSRNOG00000001309|protein_coding|Camkk2|Calcium/calmodulin-dependent protein kinase kinase 2 (EC 2.7.11.17) (Calcium/calmodulin-dependent protein kinase kinase beta) (CaM-kinase kinase beta) (CaM-KK beta) (CaMKK beta). [Source:UniProtKB/Swiss-Prot;Acc:O88831]

block441195_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block441195_cand 5arm	0	0	0	0	0	0	0	0	0	1
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block441195_cand 5arm	0	0	0	0	0	0	0	0	0	0.000

block441195 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.50/0.50

20/20/1.00

0.0

0.0

1

0

1

0

0

24

5arm

1

1

0.20

3

1

1

na

na

Families

Member of family novel174 (seed UAAGGCA): block163900_cand, block441195_cand

		reads	miRBase family seed
seed	-UAAGGCA--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	GTAAGGCATTCAGTGTGCAG--------------------------------------------------------------------------	20	1
rat	GTAAGGCATTCAGTGTGCAGagcctgaactataagccagtggtaagggtaccactgtagcctccgttctaaatctgcctccccattttgcctta
	**********************************************************************************************
	>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>	ENSRNOT00000026279 ENSRNOG00000019246 Psme2
rat	.(((((((...((((.(((((....((((.....((((((((((....))))))))..))....))))....))))).....)))).)))))))	1.000 -31.50

rat

chromosome:15:33725464:33725557:-1

Same_strand|Boundary_coding|ENSRNOT00000026279|ENSRNOG00000019246 ## ENSRNOG00000019246|protein_coding|Psme2|Proteasome activator complex subunit 2 (Proteasome activator 28 subunit beta) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex subunit beta) (REG-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q63798]

block485799_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block485799_cand 3arm	0	0.500	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block485799_cand 3arm	0	0.000	0	0	0	0	0	0	0	0

block485799 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.007

no

no

0.52/0.52

21/21/1.00

0.0

0.0

1

0

1

0

1

9

3arm

2

1

0.19

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------CCUGUCU--------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------CCCTGTCTCTATTTCTCCCCA-	21	1
rat	gctgggaaatgggacagtggctggatcgagggaaacaatgCCCTGTCTCTATTTCTCCCCAg
	**************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>	ENSRNOT00000026333 ENSRNOG00000019438 NP_001102338.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>	ENSRNOT00000042097 ENSRNOG00000019438 NP_001102338.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>	ENSRNOT00000029569 ENSRNOG00000019438 NP_001102338.1
rat	.((((((((((((((((.(((((..((....))..))..)))))))).))))))...)))))	1.000 -24.90

rat

chromosome:15:33737308:33737369:1

Same_strand|Intronic_coding|ENSRNOT00000029569|ENSRNOG00000019438 ## ENSRNOG00000019438|protein_coding|NP_001102338.1|ring finger protein 31 [Source:RefSeq_peptide;Acc:NP_001102338]

block492188_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block492188_cand 3arm	1	0	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block492188_cand 3arm	0.000	0	0	0	0	0	0	0	0	0

block492188 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.007

no

no

0.57/0.57

21/21/1.00

0.0

0.0

1

0

1

0

3

20

3arm

1

1

0.19

3

1

1

na

na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------CUUCAUU-------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	----------------------------------------------------------------------------------------------CCTTCATTCCCTTCCCCACCA------------------------	21	1
rat	CC------------------TTGGTTGTGGGGAAAAATAATGAATGTGTGCTTAGAGCAAGTCATGAACACATCCATTGTTGGTCTAACTGTACCCTTCATTCCCTTCCCCACCAGGA---------------------
mouse	TCTTGTATTTGCCTTTGAGGTTGGTTGTAGAGGAAAGTAATGAATGTGGGCTTAGAGCA----ATGAACACATCCAGCCTTGCTCTAACTGTACTCTTCATTCCC-TCTCCACCAGAAAACTCTTGGAAGGCGAAGAGA
	*                  ******** * * *** *********** **********    *************   *** *********** ********** ** ******* *
	+++++++                  ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>                     >>>>>	ENSRNOT00000018599 ENSRNOG00000013658 Nefl
rat	.(                  (((((...((((((....((((((...(((((((((.(((...(((........)))..))).)))))..))))..))))))...)))))))))))).	0.880 -30.00
mouse	((((...((((((((((((.((((.((.(((((.....((((((.(((((.((((((((    (((........))...))))))))))).)))..)))))).)) ))).))))))....)))...)))))))))))))	0.999 -39.60

rat	chromosome:15:47638756:47638855:1	Same_strand|Intronic_coding|ENSRNOT00000018599|ENSRNOG00000013658 ## ENSRNOG00000013658|protein_coding|Nefl|Neurofilament light polypeptide (NF-L) (Neurofilament triplet L protein) (68 kDa neurofilament protein). [Source:UniProtKB/Swiss-Prot;Acc:P19527]
mouse	chromosome:14:68704433:68704566:1	Opposite_strand|Intronic_coding|ENSMUST00000111089|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Opposite_strand|Boundary_non-coding|ENSMUST00000022638|ENSMUSG00000022054|protein_coding|neurofilament, medium polypeptide Gene [Source:MGI (curated);Acc:Nefm-002] ## Same_strand|Boundary_coding|ENSMUST00000022639|ENSMUSG00000022055|protein_coding|neurofilament, light polypeptide Gene [Source:MGI (curated);Acc:Nefl-001]

block550898_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block550898_cand 3arm	0	1	0	0	0	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block550898_cand 3arm	0	0.000	0	0	0	0	0	0	0	0

block550898 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.009

no

no

0.50/0.50

20/20/1.00

0.0

0.0

1

0

1

0

4

6

3arm

1

2

0.20

2

1

1

na

na

		reads	miRBase family seed
seed	------------------------------------------GUUGGGU----------------	1	novel
		len	cloning frequencies
			T1S2
	-----------------------------------------TGTTGGGTTGCGTTTGCTCT----	20	1
rat	tcttgggcagcgtctccttagcatgcattctcatggagttgTGTTGGGTTGCGTTTGCTCTaggt
	*****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	ENSRNOT00000057726 ENSRNOG00000019629 Lamp1
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	ENSRNOT00000026580 ENSRNOG00000019629 Lamp1
rat	(((.(((((((((..((.(((((((.((((.....)))))))))))))..))))).)))).))).	1.000 -22.10

rat

chromosome:16:81220956:81221020:-1

Same_strand|Intronic_coding|ENSRNOT00000026580|ENSRNOG00000019629 ## ENSRNOG00000019629|protein_coding|Lamp1|lysosomal-associated membrane protein 1 Gene [Source:MGI Symbol;Acc:MGI:96745]

block774465_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block774465_cand 3arm	0	0	0	0	2	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block774465_cand 3arm	0	0	0	0	0.000	0	0	0	0	0

block774465 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.001

no

no

0.50/0.52

20/21/1.00

0.0

0.5

2

0

1

0

2

24

3arm

1

0

0.05

1

2

1

na

na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------CACAUUC---------------	2	novel
		len	cloning frequencies
			T3S1
	------------------------------------------------------------------------------------------TCACATTCCACCTCTTCCCAG--	21	1
	------------------------------------------------------------------------------------------TCACATTCCACCTCTTCCCA---	20	1
rat	tcctgaagaggaggtgggaagagggtattgtggtggggatttggtgatggtgtggctgagggtgaacagagagcagggtcccaggtctgaTCACATTCCACCTCTTCCCAGgg
	*****************************************************************************************************************
	>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	ENSRNOT00000037699 ENSRNOG00000023910 Man2b1
rat	.((((..((((((((((((.........((((((.((.((((((.(((..(((..(((........)))...)))..))))))))))).)))))))))))))))))).)))).	0.600 -47.80

rat

chromosome:19:24713444:24713556:-1

Same_strand|Intronic_coding|ENSRNOT00000037699|ENSRNOG00000023910 ## ENSRNOG00000023910|protein_coding|Man2b1|mannosidase 2, alpha B1 [Source:RefSeq_peptide;Acc:NP_955436]

block789226_cand

Cloning frequencies

absolute	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block789226_cand 5arm	0	0	0	0	1	0	0	0	0	0
normalized	T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S1	T4S2	T5S1	T5S2
block789226_cand 5arm	0	0	0	0	0.000	0	0	0	0	0

block789226 [novel_shortStem_mirtron_randfoldOK]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.010

no

no

0.67/0.67

24/24/1.00

0.0

0.0

1

0

1

0

3

24

5arm

1

1

0.21

2

1

1

na

na

Families

Member of family novel146 (seed UGUGUGG): block789226_cand, block1983377_cand

		reads	miRBase family seed
seed	----UGUGUGG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---GTGTGTGGGCTTGCTGGGAAGGGG-----------------------------------------------------------------------------	24	1
rat	cagGTGTGTGGGCTTGCTGGGAAGGGGgcagagggttgagggctcctgtggctagccagccctccagcactgtcctgccctctctgcaggccgtagccatgtga
	********************************************************************************************************
	>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000018671 ENSRNOG00000013913 BC039210
rat	((.(((.((.(((((((..((.(((((((((.(((((((((((.....(((....))))))))).))).))...))))))))))))))))))...))))).)).	1.000 -51.90

rat

chromosome:19:52777894:52777997:-1

Same_strand|Boundary_non-coding|ENSRNOT00000058332|ENSRNOG00000013913 ## Same_strand|Boundary_coding|ENSRNOT00000018671|ENSRNOG00000013913 ## ENSRNOG00000013913|protein_coding|BC039210|BC039210 protein Fragment [Source:UniProtKB/TrEMBL;Acc:Q80XT7]

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candidate novel miRNAs:

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