candidate novel miRNAs
novel_cloningOK_mirtron (16 loci)
block1506205_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1506205_cand 5arm | 2 | 4 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1506205_cand 5arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 |
block1506205 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.52/0.57 | 20/23/1.00 | 0.0 | 1.1 | 11 | 0 | 7 | 0 | 9 | 0 | 5arm | 1 | 0 | 0.18 | 2 | 11 | 7 | na | na |
| Member of family novel140 (seed UGACCUG): block1506205_cand, block3196951_cand |
| reads | miRBase family seed | ||||||||
| seed | ----------UGACCUG------------------------------------------------------------ | 11 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ---------ATGACCTGGTCTGCTTCCAC------------------------------------------------ | 20 | - | 3 | - | - | - | - | 1 | |
| ---------ATGACCTGGTCTGCTTCCACAG---------------------------------------------- | 22 | 1 | - | - | 1 | 1 | - | - | |
| ---------ATGACCTGGTCTGCTTCCACA----------------------------------------------- | 21 | - | 1 | 1 | - | - | 1 | - | |
| ---------ATGACCTGGTCTGCTTCCACAGC--------------------------------------------- | 23 | 1 | - | - | - | - | - | - | |
| rat | GGTTTTGCCATGACCTGGTCTGCTTCCACAGCATAAGAAGCTGGCTGAGGGCAGTGCCTATGAGGAGGTGCCTACCT | ||||||||
| mouse | ---------ATGACCTGGTCTGCTTC-------------GTAGGCT----CCAAGGCTTGTTAGCGTGCCCTGGCAG | ||||||||
| ***************** * **** ** ** * * ** * * * | |||||||||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000021872 ENSRNOG00000016340 Plcg1 | ||||||||
| ++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000022276 ENSRNOG00000016340 Plcg1 | ||||||||
| rat | (((...((.((..(((((((((((..((((((.......))))..))..))))).)))....)))..))))..))). | 0.430 -23.50 | |||||||
| mouse | .((.((.(((.((((.. .(((((( ....))))))..)))).)))..)))). | 0.971 -16.10 | |||||||
| rat | chromosome:3:151544221:151544297:1 | Same_strand|Boundary_coding|ENSRNOT00000022276|ENSRNOG00000016340 ## ENSRNOG00000016340|protein_coding|Plcg1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148). [Source:UniProtKB/Swiss-Prot;Acc:P10686] |
| mouse | chromosome:13:53329145:53329261:-1 | Same_strand|Intronic_coding|ENSMUST00000021918|ENSMUSG00000021464|protein_coding|receptor tyrosine kinase-like orphan receptor 2 Gene [Source:MGI Symbol;Acc:MGI:1347521] |
block1807419_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1807419_cand 3arm | 5 | 4 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1807419_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 |
block1807419 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.61/0.67 | 18/24/0.73 | 0.0 | 2.5 | 11 | 0 | 4 | 0 | 10 | 5 | 3arm | 1 | 1 | 0.22 | 3 | 11 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------AUGACCC-------------------------- | 11 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T4S1 | |||
| ----------------------------------------------------------CATGACCCCACCTGCACACCCAC----------- | 23 | 1 | 1 | - | 1 | |
| ----------------------------------------------------------CATGACCCCACCTGCACACCC------------- | 21 | 2 | - | - | - | |
| ----------------------------------------------------------CATGACCCCACCTGCACACCCACA---------- | 24 | 2 | - | - | - | |
| ----------------------------------------------------------CATGACCCCACCTGCACAC--------------- | 19 | - | 2 | - | - | |
| ----------------------------------------------------------CATGACCCCACCTGCACA---------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------------------CATGACCCCACCTGCACACC-------------- | 20 | - | - | 1 | - | |
| rat | ccaagggccatgtggtaagtgaccgtgggaggtggggggcagcccagtggacaatcggCATGACCCCACCTGCACACCCACAgggtcccggg | |||||
| ******************************************************************************************** | ||||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000027404 ENSRNOG00000020205 Agrn | |||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000045678 ENSRNOG00000020205 Agrn | |||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000042726 ENSRNOG00000020205 Agrn | |||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000046315 ENSRNOG00000020205 Agrn | |||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000047854 ENSRNOG00000020205 Agrn | |||||
| >>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000040468 ENSRNOG00000020205 Agrn | |||||
| rat | ((..(((((.(((((.........(((..((((((((..(((((..((.....)).))).)).))))))))...)))))))).)))))..)) | 0.680 -40.40 | ||||
| rat | chromosome:5:173014144:173014235:-1 | Same_strand|Intronic_coding|ENSRNOT00000046315|ENSRNOG00000020205 ## ENSRNOG00000020205|protein_coding|Agrn|Agrin precursor. [Source:UniProtKB/Swiss-Prot;Acc:P25304] |
block1984233_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1984233_cand 3arm | 15 | 19 | 0 | 0 | 0 | 0 | 3 | 3 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1984233_cand 3arm | 0.000 | 0.001 | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0 | 0 |
block1984233 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.333 | no | no | 0.58/0.62 | 18/23/0.80 | 0.7 | 1.4 | 31 | 0 | 4 | 0 | 23 | 4 | 3arm | 1 | 0 | 0.20 | 2 | 40 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------UCACCUG------------------------------------- | 25 | novel | |||
| seed | -----------------------------------------------------------------GCUCACC--------------------------------------- | 15 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S1 | T4S2 | |||
| ------------------------------------------------------------------CTCACCTGACCTCTCCTGCAG------------------------ | 21 | 4 | 6 | - | - | |
| ------------------------------------------------------------------CTCACCTGACCTCTCCTGCA------------------------- | 20 | - | 5 | 1 | - | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCCT---------------------------- | 19 | 3 | 3 | - | - | |
| ------------------------------------------------------------------CTCACCTGACCTCTCCTGCAGA----------------------- | 22 | 1 | 3 | 2 | - | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCCTG--------------------------- | 20 | 2 | - | - | 1 | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCCTGCA------------------------- | 22 | 3 | - | - | - | |
| ------------------------------------------------------------------CTCACCTGACCTCTCCTGCAGAC---------------------- | 23 | - | 1 | - | 1 | |
| ------------------------------------------------------------------CTCACCTGACCTCTCCTG--------------------------- | 18 | - | 1 | - | - | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCCTGC-------------------------- | 21 | 1 | - | - | - | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCC----------------------------- | 18 | - | - | - | 1 | |
| ----------------------------------------------------------------AGCTCACCTGACCTCTCCTGCAG------------------------ | 23 | 1 | - | - | - | |
| rat | CTGCCATGAGAGTGAGTGGTGCGCAGAGCGGGCGGGGTGGGGCAAGCTGGCCAGCCACGGGGACAGCTCACCTGACCTCTCCTGCAGACATCGACGACTGCATGGGTCAGC | |||||
| mouse | -------------------------GAGTTGGTGGGGTGGGGCAAGCTGGCCAGCCACAGGGACAGCTCACCCATCCTCTCCCTCAGACATTGACGACTGC---------- | |||||
| *** ** ************************* ************* ******* ******* ********* | ||||||
| >>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019213 ENSRNOG00000013927 Jag2 | |||||
| >>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019066 ENSRNOG00000013927 Jag2 | |||||
| rat | ((((((((..(((...(((((......(((((.(((((.(((..(((((.((........)).)))))..))).))))).)))))...)))))...))).)))))..))). | 0.870 -45.40 | ||||
| mouse | (((..((.((((((((...(((((.((........)).)))))..))))))))))..)))................ | 0.904 -28.90 | ||||
| rat | chromosome:6:137915518:137915628:-1 | Same_strand|Boundary_coding|ENSRNOT00000019213|ENSRNOG00000013927 ## ENSRNOG00000013927|protein_coding|Jag2|Protein jagged-2 (Jagged2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P97607] |
| mouse | chromosome:12:114152247:114152322:-1 | Same_strand|Boundary_coding|ENSMUST00000075827|ENSMUSG00000002799|protein_coding|jagged 2 Gene [Source:MGI Symbol;Acc:MGI:1098270] |
block2083763_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2083763_cand 3arm | 7 | 5.500 | 0 | 0 | 0 | 1 | 0 | 5 | 2 | 4 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2083763_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
block2083763 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.52/0.58 | 18/24/0.84 | 0.0 | 1.9 | 17 | 0 | 6 | 0 | 8 | 19 | 3arm | 1 | 0 | 0.04 | 1 | 25 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------------------------------------------------------UCACACC------------------------ | 23 | novel | |||||
| seed | ----------------------------------------------------------------------------------------CACACCU----------------------- | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCCA------------ | 20 | 2 | 1 | - | 5 | - | - | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCCACAG--------- | 23 | 2 | 2 | - | - | - | 1 | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCCACAGT-------- | 24 | 2 | - | - | - | - | 2 | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTC-------------- | 18 | 1 | 1 | - | - | - | - | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCCACA---------- | 22 | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------TCACACCTTCTCTCCTCC------------- | 18 | - | 1 | - | - | - | - | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCCAC----------- | 21 | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------------------------CTCACACCTTCTCTCCTCC------------- | 19 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------------------------------TCACACCTTCTCTCCTCCACAGT-------- | 23 | - | - | 1 | - | - | - | |
| rat | gctgtgagtagactggggaggcggaggactggtgaccctgagcactcttgggaggcagaggctgtgcagttgttgcctggaggctgCTCACACCTTCTCTCCTCCACAGTgagcagcg | |||||||
| ********************************************************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>> | ENSRNOT00000020670 ENSRNOG00000014625 Atp5d | |||||||
| rat | (((((......((((.(((((.((((((..((((....((((((..(((...((((((..(((....)))..)))))).)))..))))))))))))))))))))).))))..))))). | 1.000 -54.10 | ||||||
| rat | chromosome:7:11073414:11073531:-1 | Same_strand|Boundary_coding|ENSRNOT00000020670|ENSRNOG00000014625 ## ENSRNOG00000014625|protein_coding|Atp5d|ATP synthase subunit delta, mitochondrial precursor. [Source:UniProtKB/Swiss-Prot;Acc:P35434] |
block2157206_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2157206_cand 3arm | 0 | 0 | 3 | 2.833 | 0 | 0 | 0 | 0 | 0 | 0.500 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2157206_cand 3arm | 0 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block2157206 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.65/0.70 | 19/23/0.92 | 0.6 | 1.2 | 13 | 0 | 3 | 0 | 7 | 3 | 3arm | 3 | 0 | 0.14 | 1 | 13 | 3 | na | na |
| Member of family novel44 (seed CUGAGCC): block2157206_cand, block2157220_cand, block2175879_cand |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------UGAGCCC--------------------- | 8 | novel | ||
| seed | -------------------------------------------------------CUGAGCC---------------------- | 5 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S2 | |||
| -------------------------------------------------------CTGAGCCCCTGTCCCACCACA-------- | 21 | 2 | 2 | - | |
| -------------------------------------------------------CTGAGCCCCTGTCCCACCACAG------- | 22 | 1 | 1 | 1 | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACCACAG------- | 23 | 2 | - | - | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACCAC--------- | 21 | - | 2 | - | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACC----------- | 19 | - | 1 | - | |
| -------------------------------------------------------CTGAGCCCCTGTCCCACCAC--------- | 20 | 1 | - | - | |
| rat | ctgtctattcccagggtggctgggagggtggagctccaatcaggccccagactgACTGAGCCCCTGTCCCACCACAGgccgcag | ||||
| ************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000011880 ENSRNOG00000032261 Cyp2d4v1 | ||||
| rat | ((((......((...((((.(((((.((.((.((((...((((........))))..)))))))).))))))))).))..)))) | 0.580 -33.60 | |||
| rat | chromosome:7:120742515:120742598:-1 | Same_strand|Intronic_coding|ENSRNOT00000011880|ENSRNOG00000032261 ## ENSRNOG00000032261|protein_coding|Cyp2d4v1|Cytochrome P450 2D18 (EC 1.14.14.1) (CYPIID18) (P450 2D-29/2D-35). [Source:UniProtKB/Swiss-Prot;Acc:Q64680] |
block2157220_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2157220_cand 3arm | 0 | 0 | 3 | 2.833 | 0 | 0 | 0 | 0 | 0 | 0.500 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2157220_cand 3arm | 0 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 |
block2157220 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.65/0.70 | 19/23/0.92 | 0.6 | 1.2 | 13 | 0 | 3 | 0 | 7 | 3 | 3arm | 3 | 0 | 0.14 | 1 | 13 | 3 | na | na |
| Member of family novel44 (seed CUGAGCC): block2157206_cand, block2157220_cand, block2175879_cand |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------UGAGCCC--------------------- | 8 | novel | ||
| seed | -------------------------------------------------------CUGAGCC---------------------- | 5 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S2 | |||
| -------------------------------------------------------CTGAGCCCCTGTCCCACCACA-------- | 21 | 2 | 2 | - | |
| -------------------------------------------------------CTGAGCCCCTGTCCCACCACAG------- | 22 | 1 | 1 | 1 | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACCACAG------- | 23 | 2 | - | - | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACCAC--------- | 21 | - | 2 | - | |
| ------------------------------------------------------ACTGAGCCCCTGTCCCACC----------- | 19 | - | 1 | - | |
| -------------------------------------------------------CTGAGCCCCTGTCCCACCAC--------- | 20 | 1 | - | - | |
| rat | ctgtctattcccagggtggctgggagggtggagctccaatcaggccccagactgACTGAGCCCCTGTCCCACCACAGgccgcag | ||||
| ************************************************************************************ | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000046024 ENSRNOG00000029128 Cyp2d5 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000056021 ENSRNOG00000029128 Cyp2d5 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000056020 ENSRNOG00000029128 Cyp2d5 | ||||
| rat | ((((......((...((((.(((((.((.((.((((...((((........))))..)))))))).))))))))).))..)))) | 0.580 -33.60 | |||
| rat | chromosome:7:120760677:120760760:-1 | Same_strand|Intronic_coding|ENSRNOT00000046024|ENSRNOG00000029128 ## ENSRNOG00000029128|protein_coding|Cyp2d5|Cytochrome P450 2D10 (EC 1.14.14.1) (CYPIID10) (P450-DB5) (P450-CMF1B) (Debrisoquine 4-hydroxylase). [Source:UniProtKB/Swiss-Prot;Acc:P12939] |
block2305240_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2305240_cand 3arm | 8 | 14 | 1 | 0 | 2 | 1 | 3 | 2 | 3 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2305240_cand 3arm | 0.000 | 0.001 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
block2305240 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.093 | no | no | 0.55/0.67 | 18/23/0.91 | 0.4 | 0.6 | 21 | 0 | 9 | 0 | 15 | 2 | 3arm | 1 | 0 | 0.09 | 1 | 35 | 9 | na | na |
| Member of family novel77 (seed CUGACCC): block6619_cand, block2305240_cand |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------UGACCCU----------------------------- | 16 | novel | ||||||||
| seed | ----------------------------------------------------------------CUGACCC------------------------------ | 11 | novel | ||||||||
| seed | ------------------------------------------------------------------GACCCUC---------------------------- | 8 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------CTGACCCTCCATCCACCCTTAG--------------- | 22 | - | 5 | - | - | - | 1 | 1 | 3 | - | |
| -----------------------------------------------------------------TGACCCTCCATCCACCCTTAG--------------- | 21 | 2 | - | - | - | - | 2 | - | - | 1 | |
| ---------------------------------------------------------------TCTGACCCTCCATCCACCCTTA---------------- | 22 | 1 | 2 | - | - | - | - | 1 | - | - | |
| ---------------------------------------------------------------TCTGACCCTCCATCCACCCTTAG--------------- | 23 | 1 | - | - | 2 | - | - | - | - | - | |
| ----------------------------------------------------------------CTGACCCTCCATCCACCCTTA---------------- | 21 | - | 3 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCTCCATCCACCCTTA---------------- | 20 | 1 | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------CTGACCCTCCATCCACCC------------------- | 18 | - | 2 | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------TCTGACCCTCCATCCACCCT------------------ | 20 | 1 | 1 | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------TCTGACCCTCCATCCACCCTT----------------- | 21 | 1 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------TGACCCTCCATCCACCCTT----------------- | 19 | - | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------CTGACCCTCCATCCACCCTT----------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| rat | gatgtgcctggcctgagggcagaggggatggatggtagagcagacagcccctcctctccagtgTCTGACCCTCCATCCACCCTTAGgttttattgacgttg | ||||||||||
| ***************************************************************************************************** | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000024240 ENSRNOG00000017871 NP_001101612.1 | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000035310 ENSRNOG00000017871 NP_001101612.1 | ||||||||||
| rat | (((((....((((((((((......(((((((.(((....((((((...............))))))))).))))))).))))))))))......))))). | 0.880 -37.16 | |||||||||
| rat | chromosome:8:48911061:48911161:-1 | Same_strand|Intronic_coding|ENSRNOT00000035310|ENSRNOG00000017871 ## ENSRNOG00000017871|protein_coding|NP_001101612.1|SID1 transmembrane family, member 2 [Source:RefSeq_peptide;Acc:NP_001101612] |
block2451828_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2451828_cand 3arm | 6 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2451828_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block2451828 [novel_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.59/0.62 | 18/25/0.70 | 0.0 | 1.7 | 10 | 0 | 2 | 0 | 19 | 11 | 3arm | 1 | 0 | 0.28 | 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------UCUCACA------------------------------------ | 10 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCCCACAG--------------------- | 23 | 2 | 1 | |
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCCCACAGGA------------------- | 25 | 2 | - | |
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCCCAC----------------------- | 21 | 1 | 1 | |
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCCCA------------------------ | 20 | - | 1 | |
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCCCACA---------------------- | 22 | - | 1 | |
| -------------------------------------------------------------------------TTCTCACACAGCTCCCCC-------------------------- | 18 | 1 | - | |
| rat | gggccagatatgggaggccatcgcctcggaatgggggttgggagtatgtcagcctaggcatccctagcaagccTTCTCACACAGCTCCCCCCACAGGAgctggtagcccttggcctc | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000027762 ENSRNOG00000020450 Slc26a6 | |||
| rat | (((((((....(((..((((...(((.((...((((((((.(((...((..((.((((....))))))..))...)))...)))))))).))..)))...))))..)))))))))). | 0.700 -49.00 | ||
| rat | chromosome:8:113929217:113929333:1 | Same_strand|Boundary_coding|ENSRNOT00000027762|ENSRNOG00000020450 ## ENSRNOG00000020450|protein_coding|Slc26a6|solute carrier family 26, member 6 Gene [Source:MGI Symbol;Acc:MGI:2159728] |
block24854_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block24854_cand 3arm | 10 | 12 | 15 | 16 | 78 | 42 | 1 | 0 | 24 | 22 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block24854_cand 3arm | 0.000 | 0.001 | 0.001 | 0.001 | 0.004 | 0.003 | 0.000 | 0 | 0.002 | 0.001 |
block24854 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.37/0.50 | 18/24/0.90 | 0.0 0.0 | 0.7 0.0 | 96 1 | 0 0 | 9 1 | 0 0 | 9 5 | 18 28 | 3arm 3arm | 1 1 | 73 83 | 0.23 0.22 | 2 2 | 220 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------------------------CCAUAUG------------------------- | 175 | novel | ||||||||
| seed | ------------------------------------------------------------------------------------CAUAUGA------------------------ | 44 | novel | ||||||||
| seed | ---------------------------------------------------------------------------------------------UGACCUU--------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTCAG--------- | 24 | 6 | 8 | 8 | 3 | 34 | 24 | 1 | 15 | 8 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTC----------- | 22 | - | - | 3 | 1 | 11 | 4 | - | 3 | 4 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTCAG--------- | 23 | - | - | - | 6 | 8 | 4 | - | 3 | 5 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTAC------------- | 20 | 1 | 1 | 1 | 6 | 12 | 3 | - | - | 1 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTAC------------- | 19 | - | 2 | 1 | - | 3 | - | - | - | 2 | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTC----------- | 21 | 2 | - | - | - | 3 | 1 | - | 1 | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTT--------------- | 18 | - | - | 2 | - | 1 | 1 | - | - | 2 | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTA-------------- | 19 | - | - | - | - | 3 | 2 | - | 1 | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACTCA---------- | 23 | - | 1 | - | - | 2 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------CCATATGATGTGACCTTACTCA---------- | 22 | - | - | - | - | 1 | 2 | - | - | - | |
| ----------------------------------------------------------------------------------ACCATATGATGTGACCTTACT------------ | 21 | - | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------GTGACCTTACTCAGCTGA----- | 18 | 1 | - | - | - | - | - | - | - | - | |
| rat | aggagttcaagtgagtgtgggtgacttgcagatgaattgaatagggctaagagctttggacattcctttcttcctcttggctACCATATGATGTGACCTTACTCAGctgatcacc | ||||||||||
| ******************************************************************************************************************* | |||||||||||
| >>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000012983 ENSRNOG00000009722 Chd3 | ||||||||||
| rat | .((...(((..((((((.((((.((...((.(((..........(((((((((....((.....)).......)))))))))..))).))..)).))))))))))..)))...)) | 0.900 -31.10 | |||||||||
| rat | chromosome:10:56143487:56143601:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000057058|ENSRNOG00000009722 ## Same_strand|Intronic_coding|ENSRNOT00000012983|ENSRNOG00000009722 ## ENSRNOG00000009722|protein_coding|Chd3|Chromodomain helicase DNA-binding protein 3 long isoform (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q2KMK7] |
block139314_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block139314_cand 3arm | 1 | 3 | 3 | 5 | 12 | 9 | 7 | 9 | 1 | 4 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block139314_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.001 | 0.001 | 0.000 | 0.000 | 0.000 |
block139314 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.39/0.45 | 18/23/0.91 | 0.0 | 0.8 | 41 | 0 | 10 | 0 | 15 | 6 | 3arm | 1 | nd | 0.21 | 2 | 54 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------------ACGUAGA------------------------------ | 52 | novel | |||||||||
| seed | --------------------------------------------------------CGUAGAU----------------------------- | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------TACGTAGATCACAAACACCCAA---------------- | 22 | - | - | 1 | 5 | 6 | 3 | 1 | 3 | - | - | |
| ------------------------------------------------------TACGTAGATCACAAACACCCAAT--------------- | 23 | 1 | - | 1 | - | 4 | 1 | 1 | 2 | 1 | 2 | |
| ------------------------------------------------------TACGTAGATCACAAACACCCA----------------- | 21 | - | 2 | - | - | 1 | - | 3 | 2 | - | - | |
| ------------------------------------------------------TACGTAGATCACAAACACCC------------------ | 20 | - | - | 1 | - | - | 3 | 2 | 1 | - | - | |
| ------------------------------------------------------TACGTAGATCACAAACACC------------------- | 19 | - | - | - | - | 1 | - | - | - | - | 2 | |
| ------------------------------------------------------TACGTAGATCACAAACAC-------------------- | 18 | - | 1 | - | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------ACGTAGATCACAAACACCCA----------------- | 20 | - | - | - | - | - | 2 | - | - | - | - | |
| rat | atgagcccctacgttagtatgtgtttgtgtttacatgcagatagtatggttgtgTACGTAGATCACAAACACCCAATgatttttgcagttta | |||||||||||
| ******************************************************************************************** | ||||||||||||
| rat | .(((((......((((....((((((((((((((.(((((((......))).)))).))))).)))))))))....)))).......))))) | 0.590 -20.72 | ||||||||||
| rat | chromosome:11:83094399:83094490:-1 | intergenic |
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