candidate novel miRNAs
block425487_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block425487_cand 5arm | 4 | 4 | 1 | 2 | 0 | 2 | 2 | 4 | 110 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block425487_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.007 | 0.000 |
block425487 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.30/0.45 | 19/25/0.81 | 0.3 | 0.0 | 86 | 0 | 9 | 0 | 6 | 2 | 5arm_loop | 1 | nd | 0.10 | 2 | 130 | 9 | na | na |
| Member of family novel218 (seed UCAGCAC): block425487_cand, block2495059_cand |
| reads | miRBase family seed | ||||||||||
| seed | --------CAGCACU----------------------------------------------------------------- | 76 | novel | ||||||||
| seed | -------UCAGCAC------------------------------------------------------------------ | 32 | novel | ||||||||
| seed | ---------AGCACUA---------------------------------------------------------------- | 14 | novel | ||||||||
| seed | -----GCUCAGC-------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | -----------CACUAAA-------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ----------------AAAACCA--------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------UAAAAAC----------------------------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------TCAGCACTAAAAACCAGTGA----------------------------------------------------- | 20 | 1 | 3 | - | - | 1 | 1 | - | 63 | - | |
| ------CTCAGCACTAAAAACCAGTGA----------------------------------------------------- | 21 | 1 | - | - | 2 | 1 | - | 3 | 23 | - | |
| --------CAGCACTAAAAACCAGTGA----------------------------------------------------- | 19 | - | - | - | - | - | - | - | 14 | - | |
| -------TCAGCACTAAAAACCAGTG------------------------------------------------------ | 19 | 1 | - | 1 | - | - | 1 | 1 | 1 | 1 | |
| ----AGCTCAGCACTAAAAACCAGTGA----------------------------------------------------- | 23 | - | - | - | - | - | - | - | 3 | - | |
| ----------GCACTAAAAACCAGTGATT--------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | 1 | - | |
| ------CTCAGCACTAAAAACCAGTGATTAA------------------------------------------------- | 25 | - | - | - | - | - | - | - | 1 | - | |
| ---------------AAAAACCAGTGATTAAACC---------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------CTCAGCACTAAAAACCAGTG------------------------------------------------------ | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------CTAAAAACCAGTGATTAAAC----------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------TCAGCACTAAAAACCAGTGATTAA------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| rat | AGAAAGCTCAGCACTAAAAACCAGTGATTAAACCAGAGAAATCATTGGATGATTTGGTCCAAACTGCTATGAAGTTTTCT | ||||||||||
| mouse | ------CTCAGCACCAAACCCCAGTGGTTAAACTAGGAAGATCATTGGATGATTTGGTCCAAGTTGCTATGAAG------ | ||||||||||
| ******** *** ****** ****** ** * ********************** ********** | |||||||||||
| rat | ((((((((((((((((((..(((((((((..........)))))))))....)))))).......)))..)).))))))) | 0.480 -18.01 | |||||||||
| mouse | ..((((((((((..(((((((((..........)))))))))....))))))....))))........ | 0.583 -15.00 | |||||||||
| rat | chromosome:15:223857:223936:-1 | intergenic |
| mouse | chromosome:14:24935147:24935266:1 | intergenic |
block729993_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block729993_cand 5arm | 6.500 | 7 | 2.500 | 2.500 | 10.500 | 5 | 5.500 | 9.500 | 9.500 | 7 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block729993_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 |
block729993 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.52/0.64 | 18/25/0.70 | 0.2 | 0.8 | 48 | 0 | 10 | 0 | 19 | 0 | 5arm | 2 | nd | 0.29 | 2 | 131 | 10 | na | na |
| Member of family novel103 (seed AAGCCUC): block39297_cand, block729993_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------AAGCCUC--------------------------------------------------------------------------- | 89 | novel | |||||||||
| seed | ----------------------GCCUCCG------------------------------------------------------------------------- | 39 | novel | |||||||||
| seed | ---------------------AGCCUCC-------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------CCUCCGA------------------------------------------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------AAAGCCTCCGAGTCACTGGA--------------------------------------------------------------- | 20 | 6 | 3 | 2 | 1 | 4 | 3 | 3 | 9 | 5 | 2 | |
| ---------------------AGCCTCCGAGTCACTGGATGGGA---------------------------------------------------------- | 23 | 1 | 2 | - | - | 1 | 3 | 1 | 1 | 1 | 2 | |
| -------------------AAAGCCTCCGAGTCACTG----------------------------------------------------------------- | 18 | 2 | 2 | - | - | 1 | - | - | 2 | 1 | 2 | |
| ---------------------AGCCTCCGAGTCACTGGA--------------------------------------------------------------- | 18 | 1 | 3 | - | 1 | 1 | - | 1 | 1 | 1 | - | |
| -------------------AAAGCCTCCGAGTCACTGGAT-------------------------------------------------------------- | 21 | 1 | - | - | - | 2 | 2 | 2 | - | 1 | 1 | |
| ---------------------AGCCTCCGAGTCACTGGATG------------------------------------------------------------- | 20 | - | 1 | 1 | - | 2 | 1 | - | 2 | 1 | - | |
| -------------------AAAGCCTCCGAGTCACTGG---------------------------------------------------------------- | 19 | - | - | 1 | 1 | 1 | - | 1 | - | 3 | 1 | |
| -------------------AAAGCCTCCGAGTCACTGGATGGG----------------------------------------------------------- | 24 | - | - | - | - | 2 | - | 1 | 1 | - | 3 | |
| -------------------AAAGCCTCCGAGTCACTGGATGG------------------------------------------------------------ | 23 | - | - | 1 | - | 2 | - | - | 1 | 2 | - | |
| -------------------AAAGCCTCCGAGTCACTGGATG------------------------------------------------------------- | 22 | - | - | - | 1 | 3 | 1 | - | 1 | - | - | |
| ---------------------AGCCTCCGAGTCACTGGAT-------------------------------------------------------------- | 19 | 1 | - | - | - | 1 | - | - | - | 2 | 1 | |
| -------------------AAAGCCTCCGAGTCACTGGATGGGA---------------------------------------------------------- | 25 | - | 2 | - | 1 | - | - | 1 | - | 1 | - | |
| ---------------------AGCCTCCGAGTCACTGGATGGG----------------------------------------------------------- | 22 | - | 1 | - | - | 1 | - | 1 | - | - | 1 | |
| --------------------AAGCCTCCGAGTCACTGGAT-------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | - | |
| --------------------AAGCCTCCGAGTCACTGGA--------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----------------------GCCTCCGAGTCACTGGAT-------------------------------------------------------------- | 18 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------AGCCTCCGAGTCACTGGATGGGAA--------------------------------------------------------- | 24 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | CGTCCCCTGGTGTCCTCCCAAAGCCTCCGAGTCACTGGATGGGAAGAGCCACTGAAACTCCCAGCCAGAGCCGGGAGCTGATGGCAGTGCGCTTGAAAACGC | |||||||||||
| human | -------------------AAAGCCTCCTAGTCACTGGATGGGAAGCACTGTTGAAAATTCCAACCAAAACAGGGAGCTGAT-------------------- | |||||||||||
| mouse | -------------------AAAGCCTCCGAGTCACTGGATGGGAAGTACCGCCGAGAACCCCAGCCAGAGCCGGGAGCTGAT-------------------- | |||||||||||
| ********* ***************** * ** * *** *** * * ********** | ||||||||||||
| rat | (((.....((((..((.(((.(((..(((.((..((((.(((((..............))))).)))).)))))..)))..))).))..)))).....))). | 1.000 -36.54 | ||||||||||
| human | ..(((..(((.((...(((.(((((..((....))....))))).)))..)))))..)))... | 0.998 -16.30 | ||||||||||
| mouse | ..(((..(((.((..((((.((((................)))).)))).)))))..)))... | 1.000 -21.89 | ||||||||||
| rat | chromosome:18:15773701:15773802:1 | intergenic |
| human | chromosome:6:89850493:89850634:1 | Same_strand|Exonic_non-coding|ENST00000336032|ENSG00000146278|protein_coding|Proline-rich nuclear receptor coactivator 1 (Proline-rich protein 2)(B4-2 protein) [Source:UniProtKB/Swiss-Prot;Acc:Q12796] |
| mouse | chromosome:4:33333039:33333180:-1 | Same_strand|Exonic_non-coding|ENSMUST00000049357|ENSMUSG00000040128|protein_coding|proline-rich nuclear receptor coactivator 1 Gene [Source:MGI (curated);Acc:Pnrc1-001] |
block2044111_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2044111_cand 5arm | 4 | 4.500 | 4.500 | 6 | 1 | 3.500 | 5 | 3.500 | 6.500 | 6.500 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2044111_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
block2044111 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.55/0.58 | 18/20/0.73 | 0.1 | 0.0 | 65 | 0 | 10 | 0 | 16 | 14 | 5arm | 2 | nd | 0.20 | 2 | 89 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -----------------CAUGAGC------------------------------------------------------------------------------ | 68 | novel | |||||||||
| seed | ------------------AUGAGCC----------------------------------------------------------------------------- | 17 | novel | |||||||||
| seed | -------------------UGAGCCC---------------------------------------------------------------------------- | 4 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------ACATGAGCCCATCACAGCCT------------------------------------------------------------------ | 20 | 5 | 8 | 3 | 9 | 2 | 6 | 8 | 5 | 11 | 8 | |
| -----------------CATGAGCCCATCACAGCCT------------------------------------------------------------------ | 19 | 3 | - | 2 | 1 | - | 1 | 1 | 2 | 2 | 5 | |
| ------------------ATGAGCCCATCACAGCCT------------------------------------------------------------------ | 18 | - | - | 1 | 1 | - | - | 1 | - | - | - | |
| ----------------ACATGAGCCCATCACAGCC------------------------------------------------------------------- | 19 | - | 1 | 1 | 1 | - | - | - | - | - | - | |
| ------------------ATGAGCCCATCACAGCCTG----------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | gagtctgtctttaggaACATGAGCCCATCACAGCCTgtcatgtggggtgggatcccacaagcattgcatctggaaagtgggctaaataacatgtatggtctt | |||||||||||
| ****************************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000007070 ENSRNOG00000005323 Q4G028_RAT | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058735 ENSRNOG00000005323 Q4G028_RAT | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058734 ENSRNOG00000005323 Q4G028_RAT | |||||||||||
| rat | (((.((((........((((((((((((..(((..(((.((((...((((....))))..)))).))).)))....)))))))......))))))))).))) | 0.490 -30.60 | ||||||||||
| rat | chromosome:6:98674933:98675034:1 | Same_strand|Intronic_coding|ENSRNOT00000058735|ENSRNOG00000005323 ## ENSRNOG00000005323|protein_coding|Q4G028_RAT|Putative uncharacterized protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G028] |
block2311883_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2311883_cand 5arm | 2 | 4 | 5 | 1 | 1 | 3 | 0 | 1 | 80 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2311883_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.005 | 0 |
block2311883 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.178 | no | no | 0.42/0.50 | 19/24/0.99 | 0.0 0.0 | 0.0 0.0 | 75 4 | 0 0 | 7 2 | 0 0 | 7 15 | 28 17 | 5arm 5arm | 1 1 | nd nd | 0.30 0.22 | 4 2 | 97 | 8 | na | na |
| Located in cluster 81: block2311873_cand, block2311883_cand |
| reads | miRBase family seed | |||||||||
| seed | --------GGGUGAA------------------------------------------------------------------------------------------------------ | 92 | novel | |||||||
| seed | ----------------GGUCAAU---------------------------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | ----------GUGAAUG---------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S2 | T5S1 | |||
| -------TGGGTGAATGGTCAATGTCT------------------------------------------------------------------------------------------ | 20 | 2 | 4 | 3 | - | 1 | 3 | 1 | 75 | |
| ---------------TGGTCAATGTCTTGCCTGTAGTT------------------------------------------------------------------------------- | 23 | - | - | - | 1 | - | - | - | 3 | |
| -------TGGGTGAATGGTCAATGTCTTG---------------------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 2 | |
| -------TGGGTGAATGGTCAATGTCTTGCC-------------------------------------------------------------------------------------- | 24 | - | - | 1 | - | - | - | - | - | |
| ---------GGTGAATGGTCAATGTCTT----------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | - | |
| rat | cctgacaTGGGTGAATGGTCAATGTCTtgcctgtagttaaaccacatctctcctgagcacaggtcccaagccttttactgcctctggtgtgtgactttgatcaaccttccaatagga | |||||||||
| ********************************************************************************************************************* | ||||||||||
| rat | ((((...((((....(((((((.(((.((((.(((((..............((((....)))).............)))))....))))...))).)))))))....)))).)))). | 0.570 -29.53 | ||||||||
| rat | chromosome:8:57734973:57735089:-1 | intergenic |
block2538495_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2538495_cand 3arm | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 61 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2538495_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.004 | 0.000 |
block2538495 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.221 | no | no | 0.40/0.50 | 18/22/0.85 | 0.0 | 0.0 | 47 | 0 | 4 | 0 | 19 | 23 | 3arm | 1 | nd | 0.25 | 3 | 67 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------------------AGUAACU------------------------------- | 57 | novel | |||
| seed | ------------------------------------------------------------------------------AUAGUAA--------------------------------- | 6 | novel | |||
| seed | ---------------------------------------------------------------------------------GUAACUU------------------------------ | 3 | novel | |||
| seed | ---------------------------------------------------------------------------CCUAUAG------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------------------TAGTAACTTGCTCCCTGAGA------------------- | 20 | - | 2 | 47 | 1 | |
| -------------------------------------------------------------------------------TAGTAACTTGCTCCCTGAG-------------------- | 19 | 1 | 1 | 3 | - | |
| -----------------------------------------------------------------------------TATAGTAACTTGCTCCCTGAGA------------------- | 22 | - | - | 3 | - | |
| -----------------------------------------------------------------------------TATAGTAACTTGCTCCCTGA--------------------- | 20 | - | - | 3 | - | |
| --------------------------------------------------------------------------------AGTAACTTGCTCCCTGAG-------------------- | 18 | - | - | 2 | - | |
| -------------------------------------------------------------------------------TAGTAACTTGCTCCCTGA--------------------- | 18 | - | - | 2 | - | |
| --------------------------------------------------------------------------------AGTAACTTGCTCCCTGAGA------------------- | 19 | - | - | 1 | - | |
| --------------------------------------------------------------------------TCCTATAGTAACTTGCTCCC------------------------ | 20 | 1 | - | - | - | |
| rat | tgtaggacatggaggtggtcaagggtggcagaggactgggtttgtctttcagatttctgatttccacagcaaattcctaTAGTAACTTGCTCCCTGAGAtaaagcccctgccctccga | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((.(((.((.((.(((.(((.((((.(((((...(((((((((((...((((....))))........))))))))....)))...)))))))))..)))...))))))).))).)). | 0.980 -34.30 | ||||
| rat | chromosome:9:90632785:90632902:-1 | intergenic |
block181829_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block181829_cand 5arm | 8 | 1 | 5 | 2 | 41 | 17 | 7 | 6 | 24 | 6 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block181829_cand 5arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.001 | 0.001 | 0.000 | 0.002 | 0.000 |
block181829 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.47/0.58 | 18/24/0.94 | 0.0 0.3 | 0.0 0.1 | 1 66 | 0 0 | 1 10 | 0 0 | 9 18 | 27 15 | 5arm 5arm | 1 1 | nd nd | 0.47 0.24 | 7 2 | 117 | 10 | na | na |
| Member of family novel85 (seed GGGCUGU): block1650203_cand, block181829_cand |
| reads | miRBase family seed | |||||||||||
| seed | -------------------GGGCUGU------------------------------------------------------------------------------------------ | 63 | novel | |||||||||
| seed | --------------------GGCUGUG----------------------------------------------------------------------------------------- | 35 | novel | |||||||||
| seed | ------------------UGGGCUG------------------------------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | ----------------------CUGUGAC--------------------------------------------------------------------------------------- | 3 | novel | |||||||||
| seed | -----------------CUGGGCU-------------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ----------CCAUCUU--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------UUCUGGG---------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------TGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 22 | 1 | 1 | 2 | 1 | 17 | 13 | 2 | 4 | 10 | 2 | |
| -------------------GGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 21 | 2 | - | 1 | 1 | 9 | 2 | - | 1 | 11 | 1 | |
| ------------------TGGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 21 | - | - | 2 | - | 6 | - | - | - | - | - | |
| -------------------GGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 20 | 3 | - | - | - | 1 | 1 | - | - | 1 | 1 | |
| -----------------CTGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 23 | 1 | - | - | - | 4 | - | 1 | - | 1 | - | |
| -----------------CTGGGCTGTGACAGTCAAACTG----------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 2 | 1 | - | - | |
| ---------------------GCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | 2 | |
| ----------------TCTGGGCTGTGACAGTCAAACTGA---------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | 1 | - | - | - | |
| ------------------TGGGCTGTGACAGTCAAA-------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | 1 | - | |
| -----------------CTGGGCTGTGACAGTCAAA-------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ---------GCCATCTTCTGGGCTGTGA---------------------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------CTTCTGGGCTGTGACAGTCA---------------------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------CTGGGCTGTGACAGTCAAACT------------------------------------------------------------------------------ | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | tagccatgtgccatcttcTGGGCTGTGACAGTCAAACTGAtaagatctgattgcttctctttagtcgttagatccagtgattttaaagcctccttagggcagtttcaatgagctga | |||||||||||
| ******************************************************************************************************************** | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000030545 ENSRNOG00000025244 NP_001099377.1 | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039843 ENSRNOG00000025244 NP_001099377.1 | |||||||||||
| rat | (((((((.((((.......(((((.(((.((((..((((....((((((((.(((.......))).))))))))))))))))))).)))))......))))......))).)))). | 0.970 -32.42 | ||||||||||
| rat | chromosome:12:10140198:10140313:-1 | Same_strand|Intronic_coding|ENSRNOT00000039843|ENSRNOG00000025244 ## Same_strand|Intronic_non-coding|ENSRNOT00000030545|ENSRNOG00000025244 ## ENSRNOG00000025244|protein_coding|NP_001099377.1|transformation/transcription domain-associated protein [Source:RefSeq_peptide;Acc:NP_001099377] |
block1167286_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1167286_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.500 | 0 |
| block1167286_cand 3arm | 2 | 0.500 | 0 | 0.500 | 0 | 0 | 0 | 0 | 37 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1167286_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
| block1167286_cand 3arm | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0.002 | 0 |
block1167286 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.187 | no | no | 0.47/0.56 | 18/25/0.80 | 0.0 | 0.0 | 48 | 0 | 4 | 0 | 13 | 3 | 3arm | 2 | nd | 0.21 | 3 | 83 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------UGGCUGG----------------------------- | 72 | novel | |||
| seed | --------------------------------------------------CUGGUAU-------------------------- | 5 | novel | |||
| seed | --------------------------------------ACAUUGU-------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------------GGUAUCG------------------------ | 2 | novel | |||
| seed | ------------------------------------------------GGCUGGU---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S2 | T5S1 | |||
| ----------------------------------------------TTGGCTGGTATCGGTGCTACAAGT------------- | 24 | 3 | - | - | 48 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCT------------------- | 18 | - | - | 1 | 11 | |
| -------------------------------------------------GCTGGTATCGGTGCTACAAGT------------- | 21 | - | - | - | 5 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCTACA---------------- | 21 | - | - | - | 4 | |
| -------------------------------------CACATTGTCTTGGCTGGTATCGGTG--------------------- | 25 | - | - | - | 2 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCTAC----------------- | 20 | 1 | - | - | 1 | |
| ---------------------------------------------------TGGTATCGGTGCTACAAGT------------- | 19 | - | - | - | 2 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCTACAAG-------------- | 23 | - | - | - | 1 | |
| -----------------------------------------------TGGCTGGTATCGGTGCTACAAGT------------- | 23 | - | 1 | - | - | |
| -------------------------------------CACATTGTCTTGGCTGGTATCGGT---------------------- | 24 | - | - | - | 1 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCTACAA--------------- | 22 | - | - | - | 1 | |
| ----------------------------------------------TTGGCTGGTATCGGTGCTA------------------ | 19 | - | - | - | 1 | |
| rat | caagctgctctttacttggtgctggttgggttatatacacattgtcTTGGCTGGTATCGGTGCTACAAGTaatccccaggttt | |||||
| *********************************************************************************** | ||||||
| rat | .((.(((....(((((((((((((((..(((((...((.....))..)))))...))))))))..)))))))....))).)). | 0.950 -20.00 | ||||
| rat | chromosome:2:105722354:105722436:-1 | intergenic |
block1060516_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1060516_cand 3arm | 2 | 1 | 0 | 3 | 0 | 0 | 1 | 1 | 63 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1060516_cand 3arm | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 | 0.000 | 0.000 | 0.004 | 0 |
block1060516 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.309 | no | no | 0.35/0.42 | 19/22/0.97 | 0.0 0.0 | 0.0 0.0 | 61 1 | 0 0 | 6 1 | 0 0 | 13 5 | 12 18 | 3arm 3arm | 1 1 | nd nd | 0.25 0.41 | 3 5 | 72 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------GCUAAGA------------------------- | 69 | novel | |||||
| seed | -----------------------------------------------------------GCUGCUA---------------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------ACCUUUC------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------TGCTAAGACCTTTCTTTAAG------------- | 20 | 2 | 1 | 3 | 1 | 1 | 61 | |
| ----------------------------------------------------------TGCTGCTAAGACCTTTCTT----------------- | 19 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------------GACCTTTCTTTAAGCTTCACAC----- | 22 | - | - | - | - | - | 1 | |
| rat | acacttaagtcgagaaaagtttgtggagtagggcctggcactggagaccgtggggcagtgcTGCTAAGACCTTTCTTTAAGcttcacacgtgtc | |||||||
| ********************************************************************************************** | ||||||||
| rat | ((((..((((.((((((.((((.(((((((..((((.((..........)).))))..)))).))))))).))))))...)))).....)))). | 0.930 -24.50 | ||||||
| rat | chromosome:20:5507865:5507958:-1 | intergenic |
block1067104_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1067104_cand 3arm | 5 | 3 | 2 | 6 | 0 | 0 | 1 | 1 | 89 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1067104_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 | 0.000 | 0.000 | 0.006 | 0.000 |
block1067104 [novel_cloningHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.135 | no | no | 0.44/0.60 | 18/24/0.88 | 1.8 0.0 | 2.0 0.0 | 6 75 | 0 0 | 2 8 | 0 0 | 26 20 | 2 11 | 3arm 3arm | 1 1 | nd nd | 0.25 0.29 | 3 3 | 108 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------------GAAUCGU--------------------------------- | 99 | novel | |||||||
| seed | ----------------------------------------------------------------------AAUCGUA-------------------------------- | 2 | novel | |||||||
| seed | --------------------------------------------------------------AAACCCU---------------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------------------------------------AACCCUG--------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------------------GAAACCC----------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------------------------UGAAUCG---------------------------------- | 1 | novel | |||||||
| seed | ------------------------------------------------------------AGAAACC------------------------------------------ | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------------TGAATCGTACCAGGGCAGCAG-------------------- | 21 | 3 | 3 | 2 | 5 | - | 1 | 75 | 1 | |
| --------------------------------------------------------------------TGAATCGTACCAGGGCAG----------------------- | 18 | - | - | - | - | 1 | - | 7 | - | |
| ---------------------------------------------------------------------GAATCGTACCAGGGCAGCAG-------------------- | 20 | 1 | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------AGAAACCCTGAATCGTACCAG---------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------TGAATCGTACCAGGGCAGC---------------------- | 19 | 1 | - | - | - | - | - | - | - | |
| --------------------------------------------------------------AAACCCTGAATCGTACCAG---------------------------- | 19 | - | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------CTGAATCGTACCAGGGCAG----------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------GAGAAACCCTGAATCGTACCAGGG-------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------GAAACCCTGAATCGTACCAG---------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------GAAACCCTGAATCGTACCA----------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------------------AAACCCTGAATCGTACCA----------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| rat | cctgataggagggcagggttggagggagttcctggggggcggggtggtctgcatggctggagaaacccTGAATCGTACCAGGGCAGCAGcccagaagtccaaagtaggg | |||||||||
| ************************************************************************************************************* | ||||||||||
| rat | ((((...(((((((...((((........((((((((..((((((..(((.((....)).))).))))))..))...)))))))))).)))).....)))....)))). | 0.650 -38.80 | ||||||||
| rat | chromosome:20:13196023:13196131:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_randfoldOK (11 loci)
sblock10304_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock10304_cand 5arm | 0 | 0 | 0.200 | 0 | 0.200 | 0.400 | 0 | 0 | 0 | 0 |
| sblock10304_cand 3arm | 0 | 0 | 0 | 0 | 0.667 | 1.667 | 0.333 | 1.333 | 0.333 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock10304_cand 5arm | 0 | 0 | 0.000 | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 |
| sblock10304_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 |
sblock10304 [novel_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.58 | 18/26/0.76 | 0.0 0.3 | 3.2 0.8 | 4 13 | 0 0 | 3 5 | 0 0 | 6 12 | 0 3 | 5arm 3arm | 5 5 | nd nd | 0.05 0.16 | 1 2 | 17 | 6 | 3 | -1 |
| Member of family novel178 (seed GUGGUUG): sblock10304_cand, sblock3474_cand |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------CUGGGUA----------------------------- | 9 | novel | |||||
| seed | -------GUGGUUG------------------------------------------------------------------ | 4 | novel | |||||
| seed | ---------------------------------------------UGGGUAG---------------------------- | 4 | novel | |||||
| len | cloning frequencies | |||||||
| T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------TCTGGGTAGCCATCCTCACACAC-------------- | 23 | - | 2 | 3 | 1 | 2 | 1 | |
| --------------------------------------------CTGGGTAGCCATCCTCACA----------------- | 19 | - | - | - | - | 2 | - | |
| --------------------------------------------CTGGGTAGCCATCCTCACACACAC------------ | 24 | - | - | 2 | - | - | - | |
| ------AGTGGTTGAGGATTCTACTC------------------------------------------------------ | 20 | 1 | - | - | - | - | - | |
| ------AGTGGTTGAGGATTCTAC-------------------------------------------------------- | 18 | - | - | 1 | - | - | - | |
| ------AGTGGTTGAGGATTCTACTCA----------------------------------------------------- | 21 | - | - | 1 | - | - | - | |
| ------AGTGGTTGAGGATTCTACTCAAAGTC------------------------------------------------ | 26 | - | 1 | - | - | - | - | |
| rat | gcagtaAGTGGTTGAGGATTCTACTCAAAGTCcagcatcagacTCTGGGTAGCCATCCTCACACACACtcctcatagtgt | |||||||
| ******************************************************************************** | ||||||||
| rat | (((.(((((((((((((((.(((((((.((((........)))).)))))))..))))))).)).)))).....)).))) | 0.870 -28.10 | ||||||
| rat | chromosome:6:74942740:74942819:1 | intergenic |
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