candidate novel miRNAs
novel_multiarm_DicerOK_mirtron (5 loci)
sblock3277_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3277_cand 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| sblock3277_cand 3arm | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3277_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
| sblock3277_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock3277 [novel_multiarm_DicerOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.55/0.65 | 20/24/1.00 | 0.0 1.0 | 2.0 0.0 | 2 2 | 0 0 | 2 2 | 0 0 | 16 13 | 3 5 | 5arm 3arm | 1 1 | 34 0 | 0.20 0.18 | 2 2 | 4 | 3 | 2 | 1 |
| reads | miRBase family seed | ||||
| seed | -----------------GCCAGGA--------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------UUGGUGU--------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------GGUGUUG------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S2 | |||
| ------------------------------------------------------TGGTGTTGTGCCTTCTGCAG------------- | 20 | - | 1 | - | |
| ----------------AGCCAGGAGGCAGAAGCCCAAATC----------------------------------------------- | 24 | - | - | 1 | |
| ----------------AGCCAGGAGGCAGAAGCCCA--------------------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------GTTGGTGTTGTGCCTTCTGCAG------------- | 22 | 1 | - | - | |
| rat | gagtgcccaggaagccAGCCAGGAGGCAGAAGCCCAAATCcagccctctgaaGTTGGTGTTGTGCCTTCTGCAGgtcctcccgactc | ||||
| *************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>> | ENSRNOT00000001826 ENSRNOG00000001352 | ||||
| rat | ((((....(((..(((.((.((((((((.((..((((...(((....)))...))))..)).)))))))))).))))))....)))) | 0.980 -31.60 | |||
| rat | chromosome:12:36320467:36320553:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000001826|ENSRNOG00000001352 ## ENSRNOG00000001352|protein_coding|| |
sblock4821_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock4821_cand 5arm | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock4821_cand 3arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock4821_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock4821_cand 3arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock4821 [novel_multiarm_DicerOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.50/0.68 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 5 0 | 1 2 | 5arm 3arm | 1 1 | 36 1 | 0.23 0.24 | 3 2 | 3 | 1 | 1 | 2 |
| Member of family novel205 (seed GACAGCC): block1310170_cand, sblock4821_cand |
| reads | miRBase family seed | ||
| seed | ------CACAGGG------------------------------------------------- | 2 | novel |
| seed | -----------------------------------------GACAGCC-------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -----CCACAGGGGAAGGATGGGGCAG----------------------------------- | 22 | 2 | |
| ----------------------------------------TGACAGCCTTCCCTTGTTTCCA | 22 | 1 | |
| rat | ggcagCCACAGGGGAAGGATGGGGCAGcaggtgccaaggcTGACAGCCTTCCCTTGTTTCCA | ||
| ************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000046143 ENSRNOG00000028426 Mcf2l | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000043170 ENSRNOG00000028426 Mcf2l | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000023352 ENSRNOG00000028426 Mcf2l | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000033358 ENSRNOG00000028426 Mcf2l | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>> | ENSRNOT00000033309 ENSRNOG00000028426 Mcf2l | ||
| rat | ((.....(((((((((((.((...((((..........)))).)).)))))))))))..)). | 0.980 -25.90 |
| rat | chromosome:16:81384407:81384468:-1 | Same_strand|Intronic_coding|ENSRNOT00000033358|ENSRNOG00000028426 ## ENSRNOG00000028426|protein_coding|Mcf2l|Guanine nucleotide exchange factor DBS (DBL's big sister) (MCF2- transforming sequence-like protein) (OST oncogene) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:Q63406] |
novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK (4 loci)
sblock10190_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock10190_cand 5arm | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 |
| sblock10190_cand 3arm | 22 | 12 | 0 | 0 | 0 | 0 | 0 | 8 | 1 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock10190_cand 5arm | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 |
| sblock10190_cand 3arm | 0.001 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0.000 |
sblock10190 [novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.55/0.76 | 18/22/0.76 | 1.2 0.0 | 1.5 0.6 | 4 29 | 0 0 | 3 5 | 0 0 | 24 36 | 2 5 | 5arm 3arm | 1 1 | 32 0 | 0.14 0.26 | 3 2 | 49 | 7 | 2 | 0 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------UAACUCG-------------------------------------------------- | 45 | novel | ||||||
| seed | ---------------------------UGGGGGA---------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | -------------------------CCUGGGG------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | --------------------------CUGGGGG----------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------CTAACTCGGCTGCTCCCAAAG------------------------------------- | 21 | 11 | 8 | - | - | 3 | - | 1 | |
| ----------------------------------------------------------CTAACTCGGCTGCTCCCAAAGA------------------------------------ | 22 | 4 | 2 | - | - | 1 | - | 1 | |
| ----------------------------------------------------------CTAACTCGGCTGCTCCCAA--------------------------------------- | 19 | 6 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------CTAACTCGGCTGCTCCCA---------------------------------------- | 18 | 1 | 2 | - | - | 1 | - | - | |
| ----------------------------------------------------------CTAACTCGGCTGCTCCCAAA-------------------------------------- | 20 | - | - | - | - | 3 | - | - | |
| --------------------------CTGGGGGACTGCCGGGTAGCC--------------------------------------------------------------------- | 21 | 1 | - | 1 | - | - | - | - | |
| ------------------------TCCTGGGGGACTGCCGGGTA------------------------------------------------------------------------ | 20 | - | - | - | 1 | - | - | - | |
| -------------------------CCTGGGGGACTGCCGGGTA------------------------------------------------------------------------ | 19 | 1 | - | - | - | - | - | - | |
| rat | tgcctggtagggtctgtgtggcattcctgggggactgccgggtagccgctgctgctggCTAACTCGGCTGCTCCCAAAGAggagctgctgattgagcgggtgtcccatgctggcat | ||||||||
| ******************************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019213 ENSRNOG00000013927 Jag2 | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019066 ENSRNOG00000013927 Jag2 | ||||||||
| rat | ((((.((((((((((((.(((((((((((((((...(((((((((((((....)).))))).))))))..))))))....)))).))))).....)))))...))).)))))))). | 0.980 -56.10 | |||||||
| rat | chromosome:6:137921998:137922113:-1 | Same_strand|Intronic_coding|ENSRNOT00000019213|ENSRNOG00000013927 ## Same_strand|Boundary_coding|ENSRNOT00000019213|ENSRNOG00000013927 ## ENSRNOG00000013927|protein_coding|Jag2|Protein jagged-2 (Jagged2) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P97607] |
sblock12645_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12645_cand 5arm | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| sblock12645_cand 3arm | 6 | 8 | 2 | 0 | 3 | 1 | 1 | 2 | 3 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12645_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 |
| sblock12645_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
sblock12645 [novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.47/0.60 | 18/24/0.77 | 0.7 0.6 | 0.0 2.5 | 3 27 | 0 0 | 3 9 | 0 0 | 19 16 | 9 2 | 5arm 3arm | 1 1 | 46 0 | 0.17 0.16 | 1 2 | 30 | 9 | -2 | 1 |
| reads | miRBase family seed | ||||||||||
| seed | --------------------------------------------------------------CAACACC------------------------------- | 14 | novel | ||||||||
| seed | ---------------------------------------------------------------AACACCU------------------------------ | 12 | novel | ||||||||
| seed | ---------------------CGGAGAG------------------------------------------------------------------------ | 2 | novel | ||||||||
| seed | --------------------UCGGAGA------------------------------------------------------------------------- | 1 | novel | ||||||||
| seed | ----------------------------------------------------------UUCACAA----------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------CAACACCTCAATCCTCCCCCAG---------------- | 22 | - | 2 | 1 | - | - | - | 2 | 1 | - | |
| -------------------------------------------------------------ACAACACCTCAATCCTCCCCCA----------------- | 22 | 2 | - | - | 1 | 1 | - | - | - | 1 | |
| -------------------------------------------------------------ACAACACCTCAATCCTCCC-------------------- | 19 | 1 | - | 1 | 2 | - | - | - | - | - | |
| --------------------------------------------------------------CAACACCTCAATCCTCCCCC------------------ | 20 | 1 | 2 | - | - | - | - | - | - | - | |
| --------------------------------------------------------------CAACACCTCAATCCTCCCCCA----------------- | 21 | 2 | 1 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------ACAACACCTCAATCCTCCCCC------------------ | 21 | - | 2 | - | - | - | - | - | - | - | |
| -------------------------------------------------------------ACAACACCTCAATCCTCCCCCAG---------------- | 23 | - | - | - | - | - | 1 | - | 1 | - | |
| --------------------TCGGAGAGGATTGGTGTA-------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | 1 | - | - | |
| -------------------ATCGGAGAGGATTGGTGTA-------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------TTTCACAACACCTCAATCCTCCCC------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------ACAACACCTCAATCCTCCCC------------------- | 20 | - | 1 | - | - | - | - | - | - | - | |
| rat | ccattagctacagtgggacATCGGAGAGGATTGGTGTAtgtggctgggcatctaaccTTTCACAACACCTCAATCCTCCCCCAGccatctgcgtagatgg | ||||||||||
| **************************************************************************************************** | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000013369 ENSRNOG00000009749 Wdr45 | ||||||||||
| rat | (((((.((..(((..((.....((.((((((((((((.(((((..((........))..))))))))))..)))))))))....))..))).)).))))) | 0.580 -36.60 | |||||||||
| rat | chromosome:X:26817019:26817118:-1 | Same_strand|Intronic_coding|ENSRNOT00000013369|ENSRNOG00000009749 ## ENSRNOG00000009749|protein_coding|Wdr45|WD repeat domain 45 Gene [Source:MGI (curated);Acc:Wdr45-001] |
sblock2235_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2235_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 |
| sblock2235_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 22 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2235_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0 | 0 |
| sblock2235_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0.001 | 0.001 | 0 | 0 |
sblock2235 [novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.65 | 18/25/0.72 | 2.3 0.5 | 1.3 1.6 | 3 27 | 0 0 | 2 2 | 0 0 | 10 19 | 6 6 | 5arm 3arm | 1 1 | 38 0 | 0.05 0.11 | 1 1 | 39 | 2 | 0 | 0 |
| Member of family novel70 (seed CUGGGAC): sblock11098_cand, sblock2235_cand |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------CAACCCU------------------------------------ | 22 | novel | |
| seed | -----------------------------------------------------ACCCUGC---------------------------------- | 14 | novel | |
| seed | --------------CUGGGAC------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------UGGGACA------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------UGUCUGG---------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T4S2 | |||
| --------------------------------------------------TCAACCCTGCTCTTTGTCCCA----------------------- | 21 | 4 | 3 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCAGCAG------------------- | 23 | 1 | 3 | |
| --------------------------------------------------TCAACCCTGCTCTTTGTCCCAG---------------------- | 22 | 3 | 1 | |
| --------------------------------------------------TCAACCCTGCTCTTTGTCCCAGCA-------------------- | 24 | - | 4 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCA----------------------- | 19 | 2 | 1 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCAGC--------------------- | 21 | 1 | 2 | |
| --------------------------------------------------TCAACCCTGCTCTTTGTCC------------------------- | 19 | 2 | 1 | |
| --------------------------------------------------TCAACCCTGCTCTTTGTCCC------------------------ | 20 | - | 2 | |
| --------------------------------------------------TCAACCCTGCTCTTTGTC-------------------------- | 18 | - | 2 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCAGCA-------------------- | 22 | - | 1 | |
| ----------ATGTCTGGGACAGGGGTAGGG--------------------------------------------------------------- | 21 | - | 1 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCAG---------------------- | 20 | 1 | - | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCC------------------------ | 18 | - | 1 | |
| -------------TCTGGGACAGGGGTAGGGA-------------------------------------------------------------- | 19 | 1 | - | |
| --------------CTGGGACAGGGGTAGGGAGA------------------------------------------------------------ | 20 | - | 1 | |
| ----------------------------------------------------AACCCTGCTCTTTGTCCCAGCAGTT----------------- | 25 | - | 1 | |
| rat | gccattcagaatgtctgggacaggggtagggagagatgtcatttgaagacTCAACCCTGCTCTTTGTCCCAGCAGtttgcacagaggaaaggtg | |||
| ********************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000019746 ENSRNOG00000014705 NP_001101081.1 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054685 ENSRNOG00000014705 NP_001101081.1 | |||
| ................................................................................>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000054684 ENSRNOG00000014705 NP_001101081.1 | |||
| rat | (((.(((....((((((((((((((((((((.(((...((....))...)))..)))))).)))))))))))........)))...))).))). | 0.740 -37.50 | ||
| rat | chromosome:1:260108751:260108844:1 | Same_strand|Boundary_non-coding|ENSRNOT00000054683|ENSRNOG00000014705 ## Same_strand|Intronic_non-coding|ENSRNOT00000019746|ENSRNOG00000014705 ## Same_strand|Boundary_coding|ENSRNOT00000054685|ENSRNOG00000014705 ## Same_strand|Intronic_coding|ENSRNOT00000054685|ENSRNOG00000014705 ## ENSRNOG00000014705|protein_coding|NP_001101081.1|RNA binding motif protein 20 [Source:RefSeq_peptide;Acc:NP_001101081] |
sblock871_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock871_cand 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock871_cand 3arm | 8 | 6 | 4 | 0 | 2 | 2 | 0 | 2 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock871_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock871_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0 | 0.000 | 0 | 0 |
sblock871 [novel_cloningOK_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.60/0.67 | 18/21/0.84 | 0.0 0.2 | 0.0 0.3 | 1 12 | 0 0 | 1 6 | 0 0 | 32 28 | 6 6 | 5arm 3arm | 1 1 | 37 0 | 0.10 0.10 | 1 1 | 25 | 6 | 0 | 1 |
| reads | miRBase family seed | |||||||
| seed | ----------------------------------------------------------------------CUGUUCU----------------------------------------- | 14 | miR-26b* | |||||
| seed | -----------------------------------------------------------------------UGUUCUC---------------------------------------- | 10 | novel | |||||
| seed | ---------------------------------GGAGGAU------------------------------------------------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | |||
| ---------------------------------------------------------------------CCTGTTCTCCCTGTCCTCCAG---------------------------- | 21 | 4 | 1 | 2 | - | 1 | - | |
| ----------------------------------------------------------------------CTGTTCTCCCTGTCCTCCAG---------------------------- | 20 | 1 | 1 | 1 | 1 | 1 | 2 | |
| ---------------------------------------------------------------------CCTGTTCTCCCTGTCCTCCA----------------------------- | 20 | 2 | 2 | - | - | - | - | |
| ----------------------------------------------------------------------CTGTTCTCCCTGTCCTCC------------------------------ | 18 | - | 1 | - | 1 | - | - | |
| ---------------------------------------------------------------------CCTGTTCTCCCTGTCCTCC------------------------------ | 19 | - | 1 | 1 | - | - | - | |
| ----------------------------------------------------------------------CTGTTCTCCCTGTCCTCCAGC--------------------------- | 21 | 1 | - | - | - | - | - | |
| --------------------------------GGGAGGATGGTGGGGACAGAG----------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | |
| rat | TGCCACCTTAGGGCCCAGGCCTACTGGGGCAGGGGAGGATGGTGGGGACAGAGGAGGAGGTCCCTAAACCCTGTTCTCCCTGTCCTCCAGCTCCGGCTTGATGAGACCCAGGAGGCAG | |||||||
| mouse | ------------------------------------GGATGATGGGGACAGAGGAGGAGGTCCCTAAACCCTGTTCTCCCTGTCCTCCAGCTCC------------------------ | |||||||
| ***** **************************************************** | ||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055018 ENSRNOG00000019964 Taok2 | |||||||
| rat | ((((.(((..(((..((((((....(((((...(((((((((.((((((((.((...((....))...)))))))))).))))))))).)))))))))))......)))))).)))). | 0.790 -59.30 | ||||||
| mouse | (((...(((((((((.(((((((((......)))...)))))))))))).)))..))) | 1.000 -26.80 | ||||||
| rat | chromosome:1:186046608:186046725:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000027080|ENSRNOG00000019964 ## Same_strand|Intronic_coding|ENSRNOT00000055018|ENSRNOG00000019964 ## Same_strand|Boundary_coding|ENSRNOT00000055018|ENSRNOG00000019964 ## ENSRNOG00000019964|protein_coding|Taok2|Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand and one amino acid protein 2). [Source:UniProtKB/Swiss-Prot;Acc:Q9JLS3] |
| mouse | chromosome:7:134010690:134010747:-1 | Same_strand|Boundary_coding|ENSMUST00000071268|ENSMUSG00000059981|protein_coding|TAO kinase 2 Gene [Source:MGI (curated);Acc:Taok2-001] ## Same_strand|Boundary_non-coding|ENSMUST00000117394|ENSMUSG00000059981|protein_coding|TAO kinase 2 Gene [Source:MGI (curated);Acc:Taok2-001] |
novel_lenNOK_cloningHIGH_mirtron_randfoldOK (3 loci)
block804146_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block804146_cand 3arm | 41 | 25 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block804146_cand 3arm | 0.001 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block804146 [novel_lenNOK_cloningHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.68/0.74 | 18/22/0.48 | 0.0 0.9 | 0.0 1.8 | 1 41 | 0 0 | 1 2 | 0 0 | 35 24 | 2 8 | 3arm 3arm | 1 1 | 11 0 | 0.22 0.14 | 2 2 | 66 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------CUCGCUC------------------------------------- | 34 | novel | |
| seed | -------------------------------------------------------------------UCCUCGC--------------------------------------- | 30 | novel | |
| seed | -------------------------------------------------------------GGCCGGU--------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------UCGCUCU------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ------------------------------------------------------------------GTCCTCGCTCTCTTCCCCC---------------------------- | 19 | 16 | 7 | |
| --------------------------------------------------------------------CCTCGCTCTCTTCCCCCGCAG------------------------ | 21 | 11 | 7 | |
| --------------------------------------------------------------------CCTCGCTCTCTTCCCCCGC-------------------------- | 19 | 4 | 4 | |
| --------------------------------------------------------------------CCTCGCTCTCTTCCCCCGCA------------------------- | 20 | 3 | 3 | |
| ------------------------------------------------------------------GTCCTCGCTCTCTTCCCCCGCA------------------------- | 22 | 2 | 1 | |
| ------------------------------------------------------------------GTCCTCGCTCTCTTCCCCCG--------------------------- | 20 | 3 | - | |
| ---------------------------------------------------------------------CTCGCTCTCTTCCCCCGCA------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------CCTCGCTCTCTTCCCCCG--------------------------- | 18 | 1 | - | |
| ------------------------------------------------------------TGGCCGGTCCTCGCTCTC----------------------------------- | 18 | 1 | - | |
| --------------------------------------------------------------------CCTCGCTCTCTTCCCCCGCAGG----------------------- | 22 | - | 1 | |
| ------------------------------------------------------------------GTCCTCGCTCTCTTCCCCCGC-------------------------- | 21 | - | 1 | |
| rat | GGTGAGCCACCCGGGGCTCTGGCGGGGGAGGGCGGCGGAGGCCGGGTGTCTCGGAGGTGATGGCCGGTCCTCGCTCTCTTCCCCCGCAGGGCTGTCTACCTGGTGCGGCACCG | |||
| mouse | --------------GGCTCTGGCGGGGGAGGGTGGCGGAGGCCGGGTGTCTCGGAGGTGATGGCCGGTCCTCGCTCTCTTCCCCCGCAGAGCC-------------------- | |||
| ****************** ******************************************************** ** | ||||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004646 ENSRNOG00000003469 MAST1 | |||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000046414 ENSRNOG00000003469 MAST1 | |||
| >>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000035630 ENSRNOG00000003469 MAST1 | |||
| rat | ((((.((.(((.((((((((.(((((((((((.((((..((((((.((((........)))).))))))..)))).))))))))))))))))).....)).)))))..)))). | 1.000 -71.20 | ||
| mouse | ((((((.((((((((((..((((..((((((.((((........)))).))))))..))))..)))))))))))))))) | 1.000 -58.90 | ||
| rat | chromosome:19:24888255:24888367:1 | Same_strand|Boundary_coding|ENSRNOT00000004646|ENSRNOG00000003469 ## ENSRNOG00000003469|protein_coding|MAST1|Microtubule-associated serine/threonine-protein kinase 1 (EC 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase). [Source:UniProtKB/Swiss-Prot;Acc:Q810W7] |
| mouse | chromosome:8:87447835:87447913:-1 | Same_strand|Boundary_coding|ENSMUST00000074363|ENSMUSG00000053693|protein_coding|microtubule associated serine/threonine kinase 1 Gene [Source:MGI (curated);Acc:Mast1-001] |
block852152_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block852152_cand 3arm | 16 | 13 | 0 | 3 | 13 | 4 | 1 | 2 | 10 | 3 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block852152_cand 3arm | 0.001 | 0.001 | 0 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.001 | 0.000 |
block852152 [novel_lenNOK_cloningHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.33/0.46 | 18/24/0.69 | 0.1 | 1.7 | 46 | 0 | 9 | 0 | 20 | 6 | 3arm | 1 | 0 | 0.17 | 3 | 65 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | -----------------------------------------------------------------UACACUU------------------------------------ | 57 | novel | ||||||||
| seed | ------------------------------------------------------------------ACACUUG----------------------------------- | 8 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTCCCCA--------------------- | 23 | 4 | 4 | - | 4 | 1 | - | 1 | 2 | - | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTCCCCAG-------------------- | 24 | 5 | 1 | 1 | 1 | 1 | - | 1 | 2 | 1 | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTCCCC---------------------- | 22 | 3 | 5 | - | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTT-------------------------- | 18 | 1 | 1 | - | 2 | 2 | - | - | 3 | - | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTC------------------------- | 19 | 1 | - | 2 | 2 | - | - | - | - | - | |
| -----------------------------------------------------------------TACACTTGCCCTTTTTTCC------------------------ | 19 | - | 2 | - | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTCCC----------------------- | 21 | - | - | - | 2 | - | - | - | - | 1 | |
| -----------------------------------------------------------------TACACTTGCCCTTTTTTC------------------------- | 18 | 1 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------TTACACTTGCCCTTTTTTCC------------------------ | 20 | 1 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------TACACTTGCCCTTTTTTCCCCA--------------------- | 22 | - | - | - | 1 | - | - | - | 1 | - | |
| rat | TGCCACCAGTAAGTGGAGGCCAGTTTGGGGGACAGGGCAAGGTGGGCAGTAGCTGACAGCCTGTTTACACTTGCCCTTTTTTCCCCAGGCTATAGTTCGGTTGTGGCA | ||||||||||
| mouse | --------------------------GGGGAACAGGGCAAGGTGGACAGTAGCTGACAGCCTGTTTACACTTGTCCTTCTTTCCCC---------------------- | ||||||||||
| **** ************** *************************** **** ******* | |||||||||||
| >>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000018017 ENSRNOG00000013156 NP_001100941.1 | ||||||||||
| rat | .(((((....((.((((....(((((((((((.((((((((((((((((..((.....)))))))))).))))))))...)))))))))))....)))).))))))). | 0.890 -51.10 | |||||||||
| mouse | ((((((.((((((((((((((((..((.....)))))))))).))))))))...)))))) | 1.000 -31.20 | |||||||||
| rat | chromosome:1:63873993:63874100:-1 | Same_strand|Intronic_coding|ENSRNOT00000018017|ENSRNOG00000013156 ## ENSRNOG00000013156|protein_coding|NP_001100941.1|CCR4-NOT transcription complex, subunit 3 [Source:RefSeq_peptide;Acc:NP_001100941] |
| mouse | chromosome:7:3607527:3607674:1 | Same_strand|Boundary_coding|ENSMUST00000038913|ENSMUSG00000035632|protein_coding|CCR4-NOT transcription complex, subunit 3 Gene [Source:MGI (curated);Acc:Cnot3-002] |
block804143_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block804143_cand 3arm | 45 | 22 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block804143_cand 3arm | 0.001 | 0.001 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
block804143 [novel_lenNOK_cloningHIGH_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.70/0.78 | 18/23/0.66 | 0.0 | 0.8 | 48 | 0 | 2 | 0 | 17 | 16 | 3arm | 1 | 0 | 0.24 | 2 | 67 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------CGAGCCC------------------------------ | 66 | novel | |
| seed | ------------------------------------------------------------------------------GAGCCCA----------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCCTAG----------------- | 21 | 23 | 10 | |
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCC-------------------- | 18 | 7 | 6 | |
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCCT------------------- | 19 | 8 | 2 | |
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCCTA------------------ | 20 | 4 | 2 | |
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCCTAGG---------------- | 22 | 2 | 1 | |
| ----------------------------------------------------------------------------CCGAGCCCATCCCTGCCCTAGGA--------------- | 23 | 1 | - | |
| -----------------------------------------------------------------------------CGAGCCCATCCCTGCCCTAG----------------- | 20 | - | 1 | |
| rat | cttctggagtgcctggtgaggggtggtttgagcagtgtggggcatggggtggccctcactgggcacaccaaccaagCCGAGCCCATCCCTGCCCTAGgaattcaacccagaaga | |||
| ****************************************************************************************************************** | ||||
| >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004646 ENSRNOG00000003469 MAST1 | |||
| >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000046414 ENSRNOG00000003469 MAST1 | |||
| >>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000035630 ENSRNOG00000003469 MAST1 | |||
| rat | (((((((.((.(((((..((((((((..........((..(((.(((((((((((.....)))).))))..))).)))..))))))))))..)).)))......))))))))). | 0.490 -54.30 | ||
| rat | chromosome:19:24884930:24885043:1 | Same_strand|Boundary_coding|ENSRNOT00000004646|ENSRNOG00000003469 ## ENSRNOG00000003469|protein_coding|MAST1|Microtubule-associated serine/threonine-protein kinase 1 (EC 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase). [Source:UniProtKB/Swiss-Prot;Acc:Q810W7] |
novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK (3 loci)
sblock12651_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12651_cand 5arm | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12651_cand 3arm | 5 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock12651_cand 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock12651_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock12651 [novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.50 | 18/23/0.50 | 0.0 0.0 | 1.8 0.9 | 4 7 | 0 0 | 2 2 | 0 0 | 16 14 | 1 2 | 5arm 3arm | 1 2 | nd nd | 0.19 0.21 | 2 2 | 16 | 2 | 1 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------ACAGAAC--------------------------- | 10 | novel | |
| seed | ---------------------------GCUCAUU----------------------------------------------------------------- | 4 | novel | |
| seed | ------------------------------------------------------------------CAGAACA-------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------AGAACAU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| ----------------------------------------------------------------CACAGAACATGCAGTGAGA---------------- | 19 | 1 | 4 | |
| ----------------------------------------------------------------CACAGAACATGCAGTGAGAAC-------------- | 21 | 3 | 1 | |
| --------------------------TGCTCATTGCATGGGCTATGT---------------------------------------------------- | 21 | 1 | 1 | |
| -----------------------------------------------------------------ACAGAACATGCAGTGAGAAC-------------- | 20 | - | 1 | |
| ----------------------------------------------------------------CACAGAACATGCAGTGAG----------------- | 18 | 1 | - | |
| --------------------------TGCTCATTGCATGGGCTAT------------------------------------------------------ | 19 | - | 1 | |
| ------------------------------------------------------------------CAGAACATGCAGTGAGAACTTGA---------- | 23 | 1 | - | |
| --------------------------TGCTCATTGCATGGGCTA------------------------------------------------------- | 18 | 1 | - | |
| rat | ----------ACTAGTCTCTAGGATGTGCTCATTGCATGGGCTATGTAGATTTCTATTTA-ATACACAGAACATGCAGTGAGAACTTGATAGAGATTGG | |||
| human | -----------CTACACCCT--------------------GCTCTGTGGATTTGCAGAAATTTGCACAGAACATGGAGTGAGAA--------AG----- | |||
| mouse | TCACAAGCATATTAGTCTCTAGGATGTGCTCATTGCATGGGCTGTGTAGATTTTTATTTA-ATACACAGAACATGCAGTGAGAACTTGATAGAGAT--- | |||
| ** * ** *** *** ***** * * * *********** ******** ** | ||||
| rat | .((((((((((....((.(((((((((((..((.((((............ .)))).))..))))))))))).))....)))))))))) | 1.000 -37.42 | ||
| human | ((.(((((( (.(((((((((((....)))))..)))))).)).)).))))).. .. | 1.000 -15.10 | ||
| mouse | ..............(((((((....((.(((((((((((..(((((((............ .)))))))..))))))))))).))....))))))) | 0.994 -39.02 | ||
| rat | chromosome:X:31199363:31199450:-1 | intergenic |
| human | chromosome:2:112238412:112238539:1 | intergenic |
| mouse | chromosome:X:143443973:143444067:1 | Same_strand|Intronic_non-coding|ENSMUST00000112831|ENSMUSG00000041380|protein_coding|5-hydroxytryptamine (serotonin) receptor 2C Gene [Source:MGI (curated);Acc:Htr2c-002] |
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