candidate novel miRNAs
novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK (3 loci)
sblock948_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock948_cand 5arm | 0 | 0 | 0 | 1 | 2 | 1 | 1 | 0 | 0 | 3 |
| sblock948_cand 3arm | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock948_cand 5arm | 0 | 0 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 | 0.000 |
| sblock948_cand 3arm | 0.000 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
sblock948 [novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.43/0.61 | 18/23/0.50 | 0.0 0.0 | 1.5 1.0 | 8 2 | 0 0 | 5 2 | 0 0 | 28 27 | 0 2 | 5arm 3arm | 1 1 | nd nd | 0.20 0.30 | 2 3 | 10 | 6 | 2 | 3 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------GUGGCUA------------------------------------------------------------------------------ | 8 | novel | |||||
| seed | -----------------------------------------------------------------AUCUGCU------------------------------------------ | 2 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ----------------------------AGTGGCTATGAGGGCACC-------------------------------------------------------------------- | 18 | - | - | - | - | 1 | 2 | |
| ----------------------------AGTGGCTATGAGGGCACCT------------------------------------------------------------------- | 19 | - | - | - | 1 | - | 1 | |
| ----------------------------AGTGGCTATGAGGGCACCTGGT---------------------------------------------------------------- | 22 | - | 1 | 1 | - | - | - | |
| ----------------------------------------------------------------CATCTGCTATCTTAGTCACCCTA--------------------------- | 23 | - | - | 1 | - | - | - | |
| ----------------------------------------------------------------CATCTGCTATCTTAGTCACCC----------------------------- | 21 | 1 | - | - | - | - | - | |
| ----------------------------AGTGGCTATGAGGGCACCTG------------------------------------------------------------------ | 20 | - | - | 1 | - | - | - | |
| rat | tgctggatgccaccatctgcctcacctcAGTGGCTATGAGGGCACCTGGTtcagccccgtacacCATCTGCTATCTTAGTCACCCTAggttgggcaagaaggtctgctctacca | |||||||
| ****************************************************************************************************************** | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000045899 ENSRNOG00000020865 NP_001101034.1 | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000028329 ENSRNOG00000020865 NP_001101034.1 | |||||||
| rat | ((.((((.((.(((.(((((((.((((..(((((((.((.((((..((((............))))..)))).)).)))))))...)))).))))).)).)))..)))))).)) | 1.000 -41.30 | ||||||
| rat | chromosome:1:205044520:205044633:-1 | Same_strand|Intronic_coding|ENSRNOT00000028329|ENSRNOG00000020865 ## ENSRNOG00000020865|protein_coding|NP_001101034.1|transmembrane protein 16A [Source:RefSeq_peptide;Acc:NP_001101034] |
sblock9715_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9715_cand 5arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9715_cand 3arm | 14 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock9715_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock9715_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 |
sblock9715 [novel_lenNOK_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.33/0.39 | 18/20/0.10 | 0.0 0.0 | 0.0 0.6 | 1 18 | 0 0 | 1 4 | 0 0 | 10 8 | 15 23 | 5arm 3arm | 1 1 | nd nd | 0.28 0.35 | 3 4 | 21 | 4 | 3 | 1 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------------------------AAACAAC-------------------- | 20 | novel | |||
| seed | -----------GGGAUAC------------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S2 | |||
| --------------------------------------------------------------------------TAAACAACTCTGAAATCC---------- | 18 | 6 | 2 | - | 2 | |
| --------------------------------------------------------------------------TAAACAACTCTGAAATCCC--------- | 19 | 6 | 1 | 1 | - | |
| --------------------------------------------------------------------------TAAACAACTCTGAAATCCCT-------- | 20 | 2 | - | - | - | |
| ----------GGGGATACATGTTTATGT-------------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| rat | agagagttggggggatacatgtttatgtgtgtatacctgtatcatttaccggatacctatttgatacacagcttTAAACAACTCTGAAATCCCTcaaagctt | |||||
| ****************************************************************************************************** | ||||||
| rat | .(((..((((((((...((((((((..(((((((....(((((........))))).......)))))))....))))))....))...))))))))..))) | 0.960 -27.00 | ||||
| rat | chromosome:5:67468579:67468680:1 | intergenic |
novel_multiarm_DicerOK (3 loci)
sblock2255_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2255_cand 5arm | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| sblock2255_cand 3arm | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2255_cand 5arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0.000 |
| sblock2255_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
sblock2255 [novel_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.134 | no | no | 0.67/0.74 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 23 18 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.29 0.30 | 3 3 | 3 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | ------------------------CUGGGGU----------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------GCAGCGG--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| -----------------------TCTGGGGTTTGGCAGCAGC-GG--------------------------------------------------------- | 21 | 1 | 1 | |
| -------------------------------------------------------------GGCAGCGGCATCACCCCAGACGC------------------ | 23 | 1 | - | |
| rat | CGGTAGCGAGGCAGGCTGCTTGCTCTGGGGTTTGGCAGCAGC-GGCGGCAGCTCGAGCAGCGGCAGCGGCATCACCCCAGACGCTGACAGCCCCGCCGGCCG | |||
| mouse | -----------------------TCTGGGGTTTGGCAGCAGCAGGCAGCAGCTCAAGCAGCGGCAGCAGCATCACCCCAGA--------------------- | |||
| ******************* *** ******* ************ ************* | ||||
| rat | ((((.....(((.(((((...((((((((((...((.((.(( .((.((.......)).)).)).)).))...)))))))).))...)))))..))).)))) | 1.000 -51.20 | ||
| mouse | ((((((((...((.((.((..((.((.......)).)).)).)).))...)))))))) | 0.931 -25.10 | ||
| rat | chromosome:1:267495592:267495692:1 | intergenic ## {SimpF: oe = 0.78 0 CpG} |
| mouse | chromosome:1:8458913:8459053:-1 | Same_strand|Intronic_coding|ENSMUST00000115484|ENSMUSG00000025909|protein_coding|syntrophin, gamma 1 Gene [Source:MGI Symbol;Acc:MGI:1918346] ## {Repeats: (CTG)n -1 class=Simple_repeat,dust 0 class=dust} |
sblock2920_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2920_cand 5arm | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock2920_cand 3arm | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2920_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| sblock2920_cand 3arm | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 |
sblock2920 [novel_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.113 | no | no | 0.60/0.70 | 20/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 0 26 11 | 34 5 5 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.75 0.22 0.20 | 14 3 3 | 4 | 2 | 2 | 2 |
| Member of family novel177 (seed AGGCUCU): sblock5255_novel, sblock2920_cand |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------CGGGGGG----------------------- | 2 | novel | |
| seed | ---------------------------AGGCUCU------------------------------------------------------------ | 1 | novel | |
| seed | -CCGGACC-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| ---------------------------------------------------------------ACGGGGGGTTCGAGCCTGAA----------- | 20 | - | 2 | |
| --------------------------GAGGCTCTGGGCTCCCCACATCC--------------------------------------------- | 23 | 1 | - | |
| ACCGGACCGATGAAGAGGGA-------------------------------------------------------------------------- | 20 | 1 | - | |
| rat | ACCGGACCGATGAAGAGGGAgcgggtGAGGCTCTGGGCTCCCCACATCCgtgccagccggaggACGGGGGGTTCGAGCCTGAAtgcagaccctg | |||
| ********************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049121 ENSRNOG00000006997 App | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042130 ENSRNOG00000006997 App | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048854 ENSRNOG00000006997 App | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044081 ENSRNOG00000006997 App | |||
| rat | ...............((((.(((....((((((.(((((((((...(((...((....)).))).)))))))))))))))...)))...)))). | 0.800 -39.30 | ||
| rat | chromosome:11:24693494:24693587:-1 | Same_strand|Intronic_coding|ENSRNOT00000049121|ENSRNOG00000006997 ## ENSRNOG00000006997|protein_coding|App|Amyloid beta A4 protein precursor (APP) (ABPP) (Alzheimer disease amyloid protein homolog) (Amyloidogenic glycoprotein) (AG) [Contains: Soluble APP-alpha (S-APP-alpha); Soluble APP-beta (S-APP-beta); C99; Beta-amyloid protein 42 (Beta-APP42); Beta-amyloid [Source:UniProtKB/Swiss-Prot;Acc:P08592] ## {SimpF: oe = 0.86 -1 CpG} |
sblock5469_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5469_cand 5arm | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| sblock5469_cand 3arm | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5469_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
| sblock5469_cand 3arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
sblock5469 [novel_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.054 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 26 | 8 10 | 5arm 3arm | 1 1 | nd nd | 0.40 0.30 | 3 3 | 2 | 2 | 2 | 2 |
| reads | miRBase family seed | |||
| seed | -----------------------------ACCAAGC---------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------UCUUGCA-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| ------------------------------------------------------------------------CTCTTGCAAAGCAGTGGAGG-------------------------- | 20 | 1 | - | |
| ----------------------------TACCAAGCCGAGCAAGAGAC---------------------------------------------------------------------- | 20 | - | 1 | |
| rat | gccttgggccttagagaaaatggaaaccTACCAAGCCGAGCAAGAGACaagcagtctgtactgaaagcacagCTCTTGCAAAGCAGTGGAGGatttcagctgagaacagactgcaggt | |||
| ********************************************************************************************************************** | ||||
| rat | (((((((..(((((......(((((.(((.(((.((...(((((((....((..((......))..))....)))))))...))..)))))).))))).)))))......))).)))) | 0.680 -33.30 | ||
| rat | chromosome:18:28568642:28568759:-1 | intergenic |
miRNAunknown_cloningHIGH_multiarm_DicerNOK_randfoldOK (2 loci)
sblock5204_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5204_cand 5arm | 6.778 | 4.444 | 65.056 | 49.648 | 39.208 | 25.619 | 6.053 | 9.056 | 6.222 | 4.333 |
| sblock5204_cand 3arm | 0.040 | 0.118 | 1.408 | 0.502 | 0.222 | 0.050 | 0.040 | 0.046 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5204_cand 5arm | 0.000 | 0.000 | 0.004 | 0.003 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
| sblock5204_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 |
sblock5204 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.32/0.40 | 18/25/0.78 | 0.0 0.0 0.2 | 0.0 2.4 0.6 | 2 732 27 | 0 0 0 | 1 10 8 | 0 0 0 | 10 25 35 | 25 7 0 | 5arm 5arm 3arm | 10 10 44 | nd nd nd | 0.19 0.17 0.05 | 2 3 1 | 1470 | 10 | -7 | -6 |
| Located in cluster 31: sblock5204_cand, sblock5205_cand |
| Member of family novel193 (seed AUAUACA): sblock5204_cand, sblock5205_cand |
| reads | miRBase family seed | |||||||||||
| seed | --------------------------GUGAUGU--------------------------------------------------------------------------------------- | 1236 | miR-466c | |||||||||
| seed | -------------------------UGUGAUG---------------------------------------------------------------------------------------- | 147 | novel | |||||||||
| seed | ----------------------------------------------------------------UAUACAU------------------------------------------------- | 46 | novel | |||||||||
| seed | ---------------------------------------------------------------AUAUACA-------------------------------------------------- | 15 | novel | |||||||||
| seed | ---------------------------UGAUGUG-------------------------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | -----------------------------------------------------------------AUACAUG------------------------------------------------ | 5 | novel | |||||||||
| seed | -----------UGUGCAU------------------------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | ------------------------AUGUGAU----------------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | --------------------------------------------------------------CAUAUAC--------------------------------------------------- | 2 | novel | |||||||||
| seed | -----------------------------AUGUGUG------------------------------------------------------------------------------------ | 1 | miR-466b | |||||||||
| seed | ------------------------------------------------------------------UACAUGC----------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------GUGUAUG--------------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------------TGTGATGTGTGTATGTACATGT------------------------------------------------------------------------- | 22 | 9 | 6 | 86 | 89 | 75 | 55 | 10 | 17 | 8 | 14 | |
| -------------------------TGTGATGTGTGTATGTACATGTGT----------------------------------------------------------------------- | 24 | 16 | 5 | 124 | 68 | 46 | 29 | 10 | 17 | 8 | 3 | |
| -------------------------TGTGATGTGTGTATGTAC----------------------------------------------------------------------------- | 18 | 1 | 6 | 75 | 65 | 49 | 16 | 7 | 5 | 7 | 5 | |
| -------------------------TGTGATGTGTGTATGTACATGTG------------------------------------------------------------------------ | 23 | 4 | 6 | 31 | 21 | 19 | 17 | 2 | 7 | 3 | - | |
| -------------------------TGTGATGTGTGTATGTACATG-------------------------------------------------------------------------- | 21 | 5 | 2 | 24 | 15 | 21 | 12 | 2 | 5 | 6 | 4 | |
| ------------------------ATGTGATGTGTGTATGTACATGT------------------------------------------------------------------------- | 23 | 1 | 2 | 33 | 22 | 15 | 12 | 2 | 4 | 2 | - | |
| -------------------------TGTGATGTGTGTATGTACA---------------------------------------------------------------------------- | 19 | 3 | 1 | 17 | 10 | 7 | 5 | 5 | - | 1 | 1 | |
| -------------------------TGTGATGTGTGTATGTACAT--------------------------------------------------------------------------- | 20 | 3 | - | 13 | 10 | 9 | 7 | - | - | 3 | - | |
| ---------------------------------------------------------------ATATACATGCACACATACACAC----------------------------------- | 22 | 1 | - | 16 | 2 | 2 | 1 | 1 | - | - | - | |
| ------------------------ATGTGATGTGTGTATGTAC----------------------------------------------------------------------------- | 19 | - | - | 5 | 7 | - | 1 | - | - | - | - | |
| ------------------------ATGTGATGTGTGTATGTACAT--------------------------------------------------------------------------- | 21 | - | 1 | 4 | 4 | - | 1 | - | - | 1 | 1 | |
| ------------------------ATGTGATGTGTGTATGTACATG-------------------------------------------------------------------------- | 22 | - | - | 2 | 1 | 2 | 4 | 1 | 1 | - | - | |
| ------------------------ATGTGATGTGTGTATGTACA---------------------------------------------------------------------------- | 20 | - | - | 2 | 5 | 3 | - | - | - | - | - | |
| --------------------------------------------------------------CATATACATGCACACATACAC------------------------------------- | 21 | - | 1 | 6 | 2 | - | - | - | - | - | - | |
| ---------------------------------------------------------------ATATACATGCACACATACACA------------------------------------ | 21 | - | - | 5 | 2 | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------ATATACATGCACACATACA-------------------------------------- | 19 | - | - | 1 | 4 | - | 1 | - | 1 | - | - | |
| --------------------------GTGATGTGTGTATGTACATGTGT----------------------------------------------------------------------- | 23 | - | - | 1 | 2 | 2 | - | - | - | 1 | - | |
| ----------------------------------------------------------------TATACATGCACACATACACAC----------------------------------- | 21 | - | - | 2 | 3 | - | - | - | - | - | - | |
| -------------------------TGTGATGTGTGTATGTACATGTGTG---------------------------------------------------------------------- | 25 | - | - | 1 | 1 | 1 | - | 1 | - | - | - | |
| ---------------------------------------------------------------ATATACATGCACACATACACACAC--------------------------------- | 24 | - | 1 | 2 | - | 1 | - | - | - | - | - | |
| ------------------------ATGTGATGTGTGTATGTACATGTG------------------------------------------------------------------------ | 24 | - | - | 3 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------CATATACATGCACACATACACAC----------------------------------- | 23 | - | - | 2 | 2 | - | - | - | - | - | - | |
| ---------------------------------------------------------------ATATACATGCACACATACAC------------------------------------- | 20 | - | - | 2 | 1 | - | - | - | - | - | - | |
| ------------------------ATGTGATGTGTGTATGTA------------------------------------------------------------------------------ | 18 | - | - | - | - | 2 | - | 1 | - | - | - | |
| --------------------------GTGATGTGTGTATGTACAT--------------------------------------------------------------------------- | 19 | - | - | 1 | - | 1 | - | - | - | - | - | |
| --------------------------GTGATGTGTGTATGTACATG-------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | 1 | - | - | - | - | |
| --------------------------GTGATGTGTGTATGTACATGT------------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| -------------------------------------------------------------ACATATACATGCACACATACAC------------------------------------- | 22 | - | - | 1 | 1 | - | - | - | - | - | - | |
| ----------ATGTGCATGTGTGTATGTGAT----------------------------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------CATATACATGCACACATACACA------------------------------------ | 22 | - | - | - | - | 1 | - | - | 1 | - | - | |
| -----------------------------------------------------------------ATACATGCACACATACACAC----------------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| -------------------TGTGTATGTGATGTGTGTATGT------------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | - | - | |
| -----------------------TATGTGATGTGTGTATGTAC----------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------ATGTGATGTGTGTATGTACATGTGT----------------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------TATGTGATGTGTGTATGTACA---------------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------ATATACATGCACACATAC--------------------------------------- | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| ----------------------------GATGTGTGTATGTACATGTGT----------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| rat | gcccttatgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaaacatatacatgcacacatacacacacactggcacaaacacacacacacacacaaaatgg | |||||||||||
| ************************************************************************************************************************ | ||||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | |||||||||||
| ....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>............................... | ENSRNOT00000063004 ENSRNOG00000041251 | |||||||||||
| rat | .((.((.(((.((((..(((((((.((((.(((((((((((...((((((((((((......)))))))))))).)))))))))))......)))).)))))))..)))).))).)).)) | 1.000 -50.40 | ||||||||||
| rat | chromosome:17:79274098:79274217:-1 | Same_strand|Exonic_non-coding|ENSRNOT00000063004|ENSRNOG00000041251 ## Same_strand|Boundary_non-coding|ENSRNOT00000051529|ENSRNOG00000029235 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000041251|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TG)n 2 54 -1 class=Simple_repeat,trf 4 44 0 class=trf,dust 79274131 79274145 0 class=dust,trf 399 425 0 class=trf,(CATATA)n 4 52 -1 class=Simple_repeat,(CATATA)n 8 48 -1 class=Simple_repeat,trf 436 476 0 class=trf,(TG)n 29 54 -1 class=Simple_repeat,dust 79274168 79274208 0 class=dust} |
sblock5205_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5205_cand 5arm | 6.778 | 4.444 | 65.056 | 49.648 | 39.208 | 25.619 | 6.053 | 9.056 | 6.222 | 4.333 |
| sblock5205_cand 3arm | 0.040 | 0.118 | 1.408 | 0.502 | 0.222 | 0.050 | 0.040 | 0.046 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock5205_cand 5arm | 0.000 | 0.000 | 0.004 | 0.003 | 0.002 | 0.002 | 0.000 | 0.000 | 0.000 | 0.000 |
| sblock5205_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 |
sblock5205 (miRNA) [miRNAunknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| Ensembl miRNA | 0.001 | no | no | 0.32/0.40 | 18/25/0.78 | 0.0 0.0 0.2 | 0.0 2.4 0.6 | 2 732 27 | 0 0 0 | 1 10 8 | 0 0 0 | 11 26 29 | 25 7 0 | 5arm 5arm 3arm | 10 10 44 | nd nd nd | 0.33 0.17 0.05 | 4 3 1 | 1470 | 10 | -7 | -6 |
| Located in cluster 31: sblock5204_cand, sblock5205_cand |
| Member of family novel193 (seed AUAUACA): sblock5204_cand, sblock5205_cand |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------GUGAUGU--------------------------------------------------------------------------------- | 1236 | miR-466c | |||||||||
| seed | --------------------------UGUGAUG---------------------------------------------------------------------------------- | 147 | novel | |||||||||
| seed | -----------------------------------------------------------------UAUACAU------------------------------------------- | 46 | novel | |||||||||
| seed | ----------------------------------------------------------------AUAUACA-------------------------------------------- | 15 | novel | |||||||||
| seed | ----------------------------UGAUGUG-------------------------------------------------------------------------------- | 12 | novel | |||||||||
| seed | ------------------------------------------------------------------AUACAUG------------------------------------------ | 5 | novel | |||||||||
| seed | -------------------------AUGUGAU----------------------------------------------------------------------------------- | 2 | novel | |||||||||
| seed | ------------UGUGCAU------------------------------------------------------------------------------------------------ | 2 | novel | |||||||||
| seed | ---------------------------------------------------------------CAUAUAC--------------------------------------------- | 2 | novel | |||||||||
| seed | ------------------------------AUGUGUG------------------------------------------------------------------------------ | 1 | miR-466b | |||||||||
| seed | ---------------------GUGUAUG--------------------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -------------------------------------------------------------------UACAUGC----------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------TGTGATGTGTGTATGTACATGT------------------------------------------------------------------- | 22 | 9 | 6 | 86 | 89 | 75 | 55 | 10 | 17 | 8 | 14 | |
| --------------------------TGTGATGTGTGTATGTACATGTGT----------------------------------------------------------------- | 24 | 16 | 5 | 124 | 68 | 46 | 29 | 10 | 17 | 8 | 3 | |
| --------------------------TGTGATGTGTGTATGTAC----------------------------------------------------------------------- | 18 | 1 | 6 | 75 | 65 | 49 | 16 | 7 | 5 | 7 | 5 | |
| --------------------------TGTGATGTGTGTATGTACATGTG------------------------------------------------------------------ | 23 | 4 | 6 | 31 | 21 | 19 | 17 | 2 | 7 | 3 | - | |
| --------------------------TGTGATGTGTGTATGTACATG-------------------------------------------------------------------- | 21 | 5 | 2 | 24 | 15 | 21 | 12 | 2 | 5 | 6 | 4 | |
| -------------------------ATGTGATGTGTGTATGTACATGT------------------------------------------------------------------- | 23 | 1 | 2 | 33 | 22 | 15 | 12 | 2 | 4 | 2 | - | |
| --------------------------TGTGATGTGTGTATGTACA---------------------------------------------------------------------- | 19 | 3 | 1 | 17 | 10 | 7 | 5 | 5 | - | 1 | 1 | |
| --------------------------TGTGATGTGTGTATGTACAT--------------------------------------------------------------------- | 20 | 3 | - | 13 | 10 | 9 | 7 | - | - | 3 | - | |
| ----------------------------------------------------------------ATATACATGCACACATACACAC----------------------------- | 22 | 1 | - | 16 | 2 | 2 | 1 | 1 | - | - | - | |
| -------------------------ATGTGATGTGTGTATGTAC----------------------------------------------------------------------- | 19 | - | - | 5 | 7 | - | 1 | - | - | - | - | |
| -------------------------ATGTGATGTGTGTATGTACAT--------------------------------------------------------------------- | 21 | - | 1 | 4 | 4 | - | 1 | - | - | 1 | 1 | |
| -------------------------ATGTGATGTGTGTATGTACATG-------------------------------------------------------------------- | 22 | - | - | 2 | 1 | 2 | 4 | 1 | 1 | - | - | |
| -------------------------ATGTGATGTGTGTATGTACA---------------------------------------------------------------------- | 20 | - | - | 2 | 5 | 3 | - | - | - | - | - | |
| ---------------------------------------------------------------CATATACATGCACACATACAC------------------------------- | 21 | - | 1 | 6 | 2 | - | - | - | - | - | - | |
| ----------------------------------------------------------------ATATACATGCACACATACACA------------------------------ | 21 | - | - | 5 | 2 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------------ATATACATGCACACATACA-------------------------------- | 19 | - | - | 1 | 4 | - | 1 | - | 1 | - | - | |
| ---------------------------GTGATGTGTGTATGTACATGTGT----------------------------------------------------------------- | 23 | - | - | 1 | 2 | 2 | - | - | - | 1 | - | |
| -----------------------------------------------------------------TATACATGCACACATACACAC----------------------------- | 21 | - | - | 2 | 3 | - | - | - | - | - | - | |
| ---------------------------------------------------------------CATATACATGCACACATACACAC----------------------------- | 23 | - | - | 2 | 2 | - | - | - | - | - | - | |
| ----------------------------------------------------------------ATATACATGCACACATACACACAC--------------------------- | 24 | - | 1 | 2 | - | 1 | - | - | - | - | - | |
| --------------------------TGTGATGTGTGTATGTACATGTGTG---------------------------------------------------------------- | 25 | - | - | 1 | 1 | 1 | - | 1 | - | - | - | |
| -------------------------ATGTGATGTGTGTATGTACATGTG------------------------------------------------------------------ | 24 | - | - | 3 | - | 1 | - | - | - | - | - | |
| -------------------------ATGTGATGTGTGTATGTA------------------------------------------------------------------------ | 18 | - | - | - | - | 2 | - | 1 | - | - | - | |
| ----------------------------------------------------------------ATATACATGCACACATACAC------------------------------- | 20 | - | - | 2 | 1 | - | - | - | - | - | - | |
| ---------------------------GTGATGTGTGTATGTACATGT------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| ---------------------------------------------------------------CATATACATGCACACATACACA------------------------------ | 22 | - | - | - | - | 1 | - | - | 1 | - | - | |
| ---------------------------GTGATGTGTGTATGTACATG-------------------------------------------------------------------- | 20 | - | - | - | 1 | - | 1 | - | - | - | - | |
| -----------ATGTGCATGTGTGTATGTGAT----------------------------------------------------------------------------------- | 21 | - | - | - | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------ACATATACATGCACACATACAC------------------------------- | 22 | - | - | 1 | 1 | - | - | - | - | - | - | |
| ---------------------------GTGATGTGTGTATGTACAT--------------------------------------------------------------------- | 19 | - | - | 1 | - | 1 | - | - | - | - | - | |
| -------------------------ATGTGATGTGTGTATGTACATGTGT----------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| ------------------------TATGTGATGTGTGTATGTAC----------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------ATATACATGCACACATAC--------------------------------- | 18 | - | - | 1 | - | - | - | - | - | - | - | |
| ------------------------TATGTGATGTGTGTATGTACA---------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------GATGTGTGTATGTACATGTGT----------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------TGTGTATGTGATGTGTGTATGT------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | - | - | - | - | - | |
| ------------------------------------------------------------------ATACATGCACACATACACAC----------------------------- | 20 | - | - | 1 | - | - | - | - | - | - | - | |
| rat | tgcccttatgtatgtgcatgtgtgtaTGTGATGTGTGTATGTACATGTGTgtatatgaagaaacatatacatgcacacatacacacacactggcacaaacacacacaaaatggca | |||||||||||
| ******************************************************************************************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042430 ENSRNOG00000029235 Sfmbt2 | |||||||||||
| .....................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>......................... | ENSRNOT00000063016 ENSRNOG00000041263 | |||||||||||
| rat | .(((.((.(((.((((....(((((..(((.(((((((((((...((((((((((((......)))))))))))).))))))))))))))..)))))..)))).))).)).))). | 1.000 -50.70 | ||||||||||
| rat | chromosome:17:79274309:79274423:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000063016|ENSRNOG00000041263 ## Same_strand|Exonic_non-coding|ENSRNOT00000063016|ENSRNOG00000041263 ## Same_strand|Intronic_coding|ENSRNOT00000042430|ENSRNOG00000029235 ## ENSRNOG00000041263|miRNA|| ## ENSRNOG00000029235|protein_coding|Sfmbt2|Scm-like with four mbt domains 2 Gene [Source:MGI (curated);Acc:Sfmbt2-001] ## {Repeats: (TG)n 21 46 -1 class=Simple_repeat,dust 79274373 79274413 0 class=dust,trf 4 44 0 class=trf,trf 641 681 0 class=trf,trf 33 48 0 class=trf,(CATATA)n 4 52 -1 class=Simple_repeat,dust 79274336 79274350 0 class=dust,(CATATA)n 8 48 -1 class=Simple_repeat,(TG)n 2 46 -1 class=Simple_repeat,trf 604 630 0 class=trf} |
novel_cloningHIGH_mirtron (2 loci)
block1352494_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1352494_cand 3arm | 19.500 | 14 | 5 | 2 | 0 | 3 | 2 | 10 | 3 | 4 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1352494_cand 3arm | 0.001 | 0.001 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 |
block1352494 [novel_cloningHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.023 | no | no | 0.61/0.68 | 18/24/0.83 | 0.1 | 0.8 | 35 | 0 | 9 | 0 | 20 | 1 | 3arm | 2 | 1 | 0.26 | 2 | 64 | 9 | na | na |
| Member of family novel51 (seed UCCUCUG): block1352494_cand, block1672688_cand, sblock4028_cand |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------CCUCUGU----------------------------------- | 53 | novel | ||||||||
| seed | ---------------------------------------------------------------CUGUCCC-------------------------------- | 7 | novel | ||||||||
| seed | -----------------------------------------------------------UCCUCUG------------------------------------ | 3 | novel | ||||||||
| seed | --------------------------------------------------------------UCUGUCC--------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------TCCTCTGTCCCCACCCATCCCC--------------------- | 22 | 7 | 7 | 1 | 1 | - | - | 4 | - | - | |
| -----------------------------------------------------------TCCTCTGTCCCCACCCATCCCCA-------------------- | 23 | 5 | 2 | 2 | - | 3 | 1 | 3 | - | 3 | |
| --------------------------------------------------------------TCTGTCCCCACCCATCCCCAG------------------- | 21 | 1 | - | 2 | - | - | - | 1 | 1 | - | |
| -----------------------------------------------------------TCCTCTGTCCCCACCCATCCCCAG------------------- | 24 | 2 | 1 | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TCCTCTGTCCCCACCCATCCC---------------------- | 21 | 1 | 1 | - | - | - | 1 | 1 | - | - | |
| -----------------------------------------------------------TCCTCTGTCCCCACCCAT------------------------- | 18 | 1 | 1 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------TTCCTCTGTCCCCACCCA-------------------------- | 18 | 3 | - | - | - | - | - | - | - | - | |
| --------------------------------------------------------------TCTGTCCCCACCCATCCCC--------------------- | 19 | 1 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------------------------TCCTCTGTCCCCACCCATC------------------------ | 19 | - | 1 | - | - | - | - | 1 | - | - | |
| -------------------------------------------------------------CTCTGTCCCCACCCATCCCCAG------------------- | 22 | - | - | - | 1 | - | - | - | - | - | |
| rat | gctgaacacagagcaagctgctgaggtgggagagggagaggaaggacagggctttaacTTCCTCTGTCCCCACCCATCCCCAggagcagcagagggtggagc | ||||||||||
| ****************************************************************************************************** | |||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000024774 ENSRNOG00000018145 Crat | ||||||||||
| rat | (((...(((...((..(((.(((.((((((...(((((((((((.............)))))))..))))..)))).)).))).))).)).....))).))) | 0.800 -39.32 | |||||||||
| rat | chromosome:3:9450058:9450159:-1 | Same_strand|Intronic_coding|ENSRNOT00000024774|ENSRNOG00000018145 ## ENSRNOG00000018145|protein_coding|Crat|Carnitine O-acetyltransferase (EC 2.3.1.7) (Carnitine acetylase) (CAT) (Carnitine acetyltransferase) (CrAT). [Source:UniProtKB/Swiss-Prot;Acc:Q704S8] |
block1891285_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1891285_cand 3arm | 2 | 3 | 5 | 3 | 36 | 8 | 31 | 50 | 7 | 5 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1891285_cand 3arm | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 | 0.001 | 0.002 | 0.003 | 0.000 | 0.000 |
block1891285 [novel_cloningHIGH_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.096 | no | no | 0.60/0.65 | 18/23/0.75 | 0.0 | 0.0 | 62 | 0 | 10 | 0 | 7 | 7 | 3arm | 1 | 0 | 0.19 | 2 | 150 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | -------------------------------------------------GACCCAU-------------------- | 139 | novel | |||||||||
| seed | --------------------------------------------------ACCCAUG------------------- | 9 | novel | |||||||||
| seed | ---------------------------------------------------CCCAUGU------------------ | 2 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------TGACCCATGTCTCCCCACCAG------- | 21 | - | 2 | 2 | 1 | 17 | 3 | 12 | 33 | 5 | 2 | |
| ------------------------------------------------TGACCCATGTCTCCCCACCA-------- | 20 | 1 | 1 | 2 | - | 5 | 1 | 4 | 7 | - | 1 | |
| ------------------------------------------------TGACCCATGTCTCCCCACC--------- | 19 | 1 | - | - | 1 | 5 | 2 | 7 | 1 | - | 2 | |
| ------------------------------------------------TGACCCATGTCTCCCCAC---------- | 18 | - | - | 1 | - | 6 | 1 | 5 | 3 | - | - | |
| -------------------------------------------------GACCCATGTCTCCCCACCAG------- | 20 | - | - | - | 1 | 2 | 1 | 1 | 2 | 1 | - | |
| ------------------------------------------------TGACCCATGTCTCCCCACCAGG------ | 22 | - | - | - | - | - | - | 1 | 3 | - | - | |
| --------------------------------------------------ACCCATGTCTCCCCACCAG------- | 19 | - | - | - | - | - | - | - | 1 | 1 | - | |
| ------------------------------------------------TGACCCATGTCTCCCCACCAGGG----- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| -------------------------------------------------GACCCATGTCTCCCCACCA-------- | 19 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | gaccggctgtcctgggtgaggaggacaagggccagtcccagggtgtgcTGACCCATGTCTCCCCACCAGggggtcc | |||||||||||
| **************************************************************************** | ||||||||||||
| >+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000055950 ENSRNOG00000021437 O08591_RAT | |||||||||||
| >+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000055948 ENSRNOG00000021437 O08591_RAT | |||||||||||
| >+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>> | ENSRNOT00000039341 ENSRNOG00000021437 O08591_RAT | |||||||||||
| rat | ((((.....((((.((((.((..((((.(((.((((((...))...)))).))).))))..)))))))))))))). | 0.840 -33.80 | ||||||||||
| rat | chromosome:5:156296078:156296153:1 | Same_strand|Boundary_coding|ENSRNOT00000039341|ENSRNOG00000021437 ## Same_strand|Boundary_non-coding|ENSRNOT00000055950|ENSRNOG00000021437 ## ENSRNOG00000021437|protein_coding|O08591_RAT|Perlecan (Fragment). [Source:UniProtKB/TrEMBL;Acc:O08591] |
novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK (2 loci)
sblock2517_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2517_cand 5arm | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 |
| sblock2517_cand 3arm | 13 | 15 | 0 | 2 | 11 | 8 | 1 | 7 | 5 | 10 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock2517_cand 5arm | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0 | 0 | 0 |
| sblock2517_cand 3arm | 0.000 | 0.001 | 0 | 0.000 | 0.001 | 0.001 | 0.000 | 0.000 | 0.000 | 0.001 |
sblock2517 [novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.48/0.56 | 18/23/0.79 | 0.0 0.6 | 0.3 0.8 | 3 49 | 0 0 | 1 9 | 0 0 | 28 23 | 6 6 | 5arm 3arm | 1 1 | 42 1 | 0.15 0.21 | 2 2 | 75 | 9 | 0 | 4 |
| Member of family novel108 (seed GGCUGUU): block1808922_cand, sblock2517_cand |
| reads | miRBase family seed | ||||||||||
| seed | ------------------------------------------------------------------UUGCCAC--------------------------------------- | 31 | novel | ||||||||
| seed | -------------------------------------------------------------------UGCCACA-------------------------------------- | 28 | novel | ||||||||
| seed | --------------------------------------------------------------------GCCACAC------------------------------------- | 12 | novel | ||||||||
| seed | -----------------------------GGCUGUU---------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ---------------------------------------------------------------------CCACACU------------------------------------ | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------TTTGCCACACTGCAACACCTTAC------------------------ | 23 | - | 5 | 2 | 5 | 1 | 1 | 3 | - | 2 | |
| ------------------------------------------------------------------TTGCCACACTGCAACACCTTAC------------------------ | 22 | 3 | 3 | - | 1 | 2 | - | 1 | 1 | 3 | |
| -------------------------------------------------------------------TGCCACACTGCAACACCTTAC------------------------ | 21 | - | 3 | - | - | - | - | 1 | 3 | - | |
| -----------------------------------------------------------------TTTGCCACACTGCAACACCTT-------------------------- | 21 | 3 | - | - | 2 | - | - | 1 | - | 1 | |
| ------------------------------------------------------------------TTGCCACACTGCAACACC---------------------------- | 18 | 2 | - | - | 1 | 1 | - | 1 | - | 1 | |
| -----------------------------------------------------------------TTTGCCACACTGCAACACC---------------------------- | 19 | - | - | - | 1 | 2 | - | - | - | 1 | |
| ------------------------------------------------------------------TTGCCACACTGCAACACCT--------------------------- | 19 | 3 | - | - | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------TTGCCACACTGCAACACCTTACA----------------------- | 23 | - | 3 | - | - | 1 | - | - | - | - | |
| -------------------------------------------------------------------TGCCACACTGCAACACCTTACAG---------------------- | 23 | - | 1 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------TGCCACACTGCAACACCTTACA----------------------- | 22 | 1 | - | - | - | 1 | - | - | - | - | |
| ----------------------------TGGCTGTTGTGGTGTGCAAA---------------------------------------------------------------- | 20 | - | - | - | - | 2 | - | - | - | - | |
| --------------------------------------------------------------------GCCACACTGCAACACCTTAC------------------------ | 20 | - | - | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------TGCCACACTGCAACACCTT-------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ----------------------------TGGCTGTTGTGGTGTGCAA----------------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------TTTGCCACACTGCAACACCT--------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | |
| rat | ACAATTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGT | ||||||||||
| human | ------------------------GGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTAC------------------------ | ||||||||||
| mouse | ------------------------GGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTAC------------------------ | ||||||||||
| **************************************************************** | |||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048490 ENSRNOG00000030680 Ddx5 | ||||||||||
| rat | ((((...((....(((((((.((((....((.(((((..((((((((((...((.....))...)))))).))))..)))))))...)))).)))))))....))...)))) | 1.000 -30.90 | |||||||||
| human | .((..((.(((((..((((((((((...((.....))...)))))).))))..)))))))..)) | 1.000 -21.90 | |||||||||
| mouse | .((..((.(((((..((((((((((...((.....))...)))))).))))..)))))))..)) | 1.000 -21.90 | |||||||||
| rat | chromosome:10:96132992:96133103:-1 | Same_strand|Intronic_coding|ENSRNOT00000048490|ENSRNOG00000030680 ## ENSRNOG00000030680|protein_coding|Ddx5|ddx5 [Source:RefSeq_peptide;Acc:NP_001007614] |
| human | chromosome:17:59927312:59927463:-1 | Same_strand|Boundary_coding|ENST00000225792|ENSG00000108654|protein_coding|Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-)(DEAD box protein 5)(RNA helicase p68) [Source:UniProtKB/Swiss-Prot;Acc:P17844] |
| mouse | chromosome:11:106643966:106644117:-1 | Same_strand|Boundary_coding|ENSMUST00000021062|ENSMUSG00000020719|protein_coding|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Gene [Source:MGI (curated);Acc:Ddx5-001] ## Same_strand|Boundary_non-coding|ENSMUST00000106779|ENSMUSG00000020719|protein_coding|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 Gene [Source:MGI (curated);Acc:Ddx5-001] |
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