candidate novel miRNAs
novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK (2 loci)
sblock4024_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock4024_cand 5arm | 21 | 0 | 0 | 0 | 3 | 0 | 4 | 0 | 3 | 0 |
| sblock4024_cand 3arm | 13 | 2 | 0 | 0 | 2 | 0 | 3 | 0 | 0 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock4024_cand 5arm | 0.001 | 0 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0.000 | 0 |
| sblock4024_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0.000 | 0 | 0.000 | 0 | 0 | 0 |
sblock4024 [novel_cloningHIGH_multiarm_DicerNOK_mirtron_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.38/0.50 | 18/24/0.80 | 0.0 0.8 0.0 | 0.0 2.1 0.0 | 14 11 1 | 0 0 0 | 4 4 1 | 0 0 0 | 25 27 12 | 5 2 19 | 5arm_loop 3arm 3arm | 1 1 1 | 37 0 18 | 0.15 0.14 0.26 | 2 2 3 | 51 | 5 | 0 | 1 |
| reads | miRBase family seed | ||||||
| seed | --------------------------ACUGCAG---------------------------------------------------------------------------------- | 30 | novel | ||||
| seed | -------------------------------------------------------------------CAUGGGU----------------------------------------- | 11 | novel | ||||
| seed | ----------------------------------------------------------------GCUCAUG-------------------------------------------- | 6 | novel | ||||
| seed | ------------------------------------------------------------------UCAUGGG------------------------------------------ | 2 | novel | ||||
| seed | ---------------------------------------------------------------------------------GCAGUGA--------------------------- | 1 | novel | ||||
| seed | -----------------------------GCAGUGA------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| -------------------------TACTGCAGTGAGTTCTATGA---------------------------------------------------------------------- | 20 | 14 | - | 2 | 2 | 1 | |
| ------------------------------------------------------------------TCATGGGTCTCTATTGCAGTGA--------------------------- | 22 | 4 | - | 1 | - | - | |
| -------------------------TACTGCAGTGAGTTCTATG----------------------------------------------------------------------- | 19 | 3 | - | - | - | - | |
| ------------------------------------------------------------T---GCTCATGGGTCTCTATTGCAG------------------------------ | 22 | 3 | - | - | - | - | |
| ------------------------------------------------------------------TCATGGGTCTCTATTGCA------------------------------- | 18 | 2 | - | 1 | - | - | |
| -------------------------TACTGCAGTGAGTTCTATGAAGC------------------------------------------------------------------- | 23 | 1 | - | 1 | 1 | - | |
| -------------------------TACTGCAGTGAGTTCTATGAA--------------------------------------------------------------------- | 21 | 2 | - | - | - | 1 | |
| ------------------------------------------------------------------TCATGGGTCTCTATTGCAG------------------------------ | 19 | - | - | - | 2 | - | |
| ------------------------------------------------------------T---GCTCATGGGTCTCTATTG--------------------------------- | 19 | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------TGCAGTGAGTTCTATGAAGCCAA------------ | 23 | - | - | - | 1 | - | |
| -------------------------TACTGCAGTGAGTTCTAT------------------------------------------------------------------------ | 18 | 1 | - | - | - | - | |
| -------------------------TACTGCAGTGAGTTCTATGAAGCC------------------------------------------------------------------ | 24 | - | - | - | - | 1 | |
| ------------------------------------------------------------T---GCTCATGGGTCTCTATTGC-------------------------------- | 20 | - | 1 | - | - | - | |
| -----------------------------------------------------------------CTCATGGGTCTCTATTGCAGTG---------------------------- | 22 | 1 | - | - | - | - | |
| ------------------------------------------------------------T---GCTCATGGGTCTCTATTGCA------------------------------- | 21 | 1 | - | - | - | - | |
| ------------------------------------------------------------------TCATGGGTCTCTATTGCAGT----------------------------- | 20 | 1 | - | - | - | - | |
| -----------------------------------------------------------------CTCATGGGTCTCTATTGCAGTGA--------------------------- | 23 | 1 | - | - | - | - | |
| ----------------------------TGCAGTGAGTTCTATGAAGCCTC---------------------------------------------------------------- | 23 | - | - | - | 1 | - | |
| rat | TCAGGTAGCAGTGCTCATGGGTCTCTACTGCAGTGAGTTCTATGAAGCCTCAGGTAGCAGT---GCTCATGGGTCTCTATTGCAGTGAGTTCTATGAAGCCAATGCTCTCATGAT | ||||||
| mouse | -------------------------AACTGCAGTGAGTTCTTCCAAGCTGAGGTTAGCCCTCAGGCCCCGGGAGACCGACTTCACTGA-------GAGG---------------- | ||||||
| *************** **** * **** * ** * ** * * * ** *** ** * | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000060349 ENSRNOG00000003428 RUFY3_RAT | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000020608 ENSRNOG00000003428 RUFY3_RAT | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000004776 ENSRNOG00000003428 RUFY3_RAT | ||||||
| rat | (((((.((((..((((((((..(((.(((((((((((..(((((.(((((........)). ))))))))..))).)))))))))))..)))))).))...)))).)).))). | 1.000 -45.80 | |||||
| mouse | ..((.((((((((((((((..(((((((.....))))).))...))))))...))).)))))) )... | 0.520 -24.80 | |||||
| rat | chromosome:14:21039009:21039120:-1 | Same_strand|Intronic_coding|ENSRNOT00000004776|ENSRNOG00000003428 ## Same_strand|Boundary_coding|ENSRNOT00000004776|ENSRNOG00000003428 ## ENSRNOG00000003428|protein_coding|RUFY3_RAT|Protein RUFY3 (Rap2-interacting protein x) (RIPx) (Single axon- regulated protein) (Singar). [Source:UniProtKB/Swiss-Prot;Acc:Q5FVJ0] ## {Repeats: trf 1 22 0 class=trf,trf 48 74 0 class=trf,trf 14 39 0 class=trf} |
| mouse | chromosome:2:103936268:103936419:-1 | Opposite_strand|Intronic_non-coding|ENSMUST00000040423|ENSMUSG00000032679|protein_coding|CD59a antigen Gene [Source:MGI (curated);Acc:Cd59a-001] |
novel_cloningHIGH_multiarm_DicerNOK_randfoldOK (2 loci)
sblock3519_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3519_cand 5arm | 1 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 3 |
| sblock3519_cand 3arm | 46 | 38 | 5 | 5 | 30 | 16 | 6 | 13 | 27 | 28 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3519_cand 5arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.000 |
| sblock3519_cand 3arm | 0.002 | 0.002 | 0.000 | 0.000 | 0.001 | 0.001 | 0.000 | 0.001 | 0.002 | 0.002 |
sblock3519 [novel_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.48/0.72 | 18/24/0.70 | 1.3 0.0 0.2 | 2.2 0.0 1.4 | 9 1 117 | 0 0 0 | 4 1 10 | 0 0 0 | 24 37 28 | 2 -2 5 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.05 0.10 0.04 | 1 1 1 | 223 | 10 | -4 | -1 |
| Member of family novel19 (seed GUCCCCA): block182671_novel, block182671_novel, block182672_novel, block182672_novel, sblock3519_cand |
| reads | miRBase family seed | |||||||||||
| seed | ---------------------------------------------------------------UGCCACC------------------------------------------- | 142 | novel | |||||||||
| seed | ----------------------------------------------------------------GCCACCU------------------------------------------ | 66 | novel | |||||||||
| seed | -------------------------GUCCCCA--------------------------------------------------------------------------------- | 7 | novel | |||||||||
| seed | -----------------------------------------------------------------CCACCUU----------------------------------------- | 3 | novel | |||||||||
| seed | ------------------------------------------------------------------CACCUUU---------------------------------------- | 2 | novel | |||||||||
| seed | ---------------------------------CGCGAAG------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | -----------------------------CCAGCGC----------------------------------------------------------------------------- | 1 | novel | |||||||||
| seed | --------------------------------------------------------UCGUCAA-------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------------ATGCCACCTTTCGCGTTGTG------------------------------- | 20 | 13 | 4 | - | - | 4 | 3 | - | 2 | 8 | 5 | |
| --------------------------------------------------------------ATGCCACCTTTCGCGTTGTGGAT---------------------------- | 23 | 4 | 7 | 1 | 1 | 4 | 2 | 1 | 2 | 4 | 4 | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTG------------------------------- | 19 | 3 | 2 | 2 | 1 | 3 | 4 | 2 | - | 1 | 6 | |
| --------------------------------------------------------------ATGCCACCTTTCGCGTTG--------------------------------- | 18 | 2 | 4 | 1 | - | 7 | - | 1 | 1 | - | 4 | |
| --------------------------------------------------------------ATGCCACCTTTCGCGTTGTGG------------------------------ | 21 | 3 | 5 | 1 | - | 5 | - | - | 3 | 2 | 1 | |
| --------------------------------------------------------------ATGCCACCTTTCGCGTTGTGGA----------------------------- | 22 | 8 | 3 | - | - | - | 1 | - | 1 | 4 | 2 | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTGGA----------------------------- | 21 | 5 | 4 | - | 1 | 2 | - | - | 2 | 2 | 2 | |
| --------------------------------------------------------------ATGCCACCTTTCGCGTTGT-------------------------------- | 19 | - | 3 | - | 1 | 2 | - | 2 | 2 | 3 | 1 | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTGGAT---------------------------- | 22 | 4 | 1 | - | 1 | 3 | 1 | - | - | 1 | 3 | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTGGATTT-------------------------- | 24 | 2 | - | - | - | - | 2 | - | - | 1 | - | |
| ------------------------AGTCCCCAGCGCGAAGGG----------------------------------------------------------------------- | 18 | - | 2 | - | - | - | - | - | - | - | 2 | |
| ----------------------------------------------------------------GCCACCTTTCGCGTTGTGGAT---------------------------- | 21 | - | 3 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTGGATT--------------------------- | 23 | - | 2 | - | - | - | - | - | - | - | - | |
| ------------------------AGTCCCCAGCGCGAAGGGT---------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGTGG------------------------------ | 20 | - | - | - | - | - | 1 | - | - | 1 | - | |
| -----------------------------------------------------------------CCACCTTTCGCGTTGTGGATTTT------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------------------------------CCACCTTTCGCGTTGTGGATTT-------------------------- | 22 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------------GCGCGAAGGGTGGCGTTGT-------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------TGCCACCTTTCGCGTTGT-------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| ------------------------AGTCCCCAGCGCGAAGGGTG--------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| -------------------------------------------------------ATCGTCAATGCCACCTTTCGC------------------------------------- | 21 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------------CCCAGCGCGAAGGGTGGCGTT---------------------------------------------------------------- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | gctacagtgcggcgcctgcgcatcagtccccagcgcgaagggtggcgttgttgttatcgtcaATGCCACCTTTCGCGTTGTGGATtttacagcattatcgctgcagctttgct | |||||||||||
| ***************************************************************************************************************** | ||||||||||||
| rat | ((...(((((((((..(((.....(((((.((((((((((((((((((((.((....)).)))))))))))))))))))).))))).....)))....))))))).))..)). | 0.990 -60.20 | ||||||||||
| rat | chromosome:12:19854257:19854369:1 | intergenic ## {SimpF: oe = 0.83 1 CpG} |
sblock6740_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock6740_cand 5arm | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40 | 1 |
| sblock6740_cand 3arm | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 13 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock6740_cand 5arm | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.003 | 0.000 |
| sblock6740_cand 3arm | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0.001 | 0 |
sblock6740 [novel_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.39/0.61 | 18/26/0.79 | 0.0 0.0 0.0 0.0 | 0.7 0.0 0.0 0.0 | 3 29 1 5 | 0 0 0 0 | 1 3 1 4 | 0 0 0 0 | 5 16 31 21 | 31 17 -1 8 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.45 0.43 0.11 0.20 | 4 4 1 2 | 58 | 5 | -9 | -9 |
| Member of family miR-672 (seed GAGGUUG): rno-mir-672, sblock6740_cand |
| reads | miRBase family seed | ||||||
| seed | -----------------AGGUAGG------------------------------------------------------------------------------------- | 39 | novel | ||||
| seed | ---------------------------------------------------------------------GAGGUUG--------------------------------- | 6 | miR-672 | ||||
| seed | ---------------------------------------------------------------------------GAAUCAG--------------------------- | 5 | novel | ||||
| seed | ------CACGUGG------------------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | -----------------------------------------------------------------------------AUCAGCA------------------------- | 2 | novel | ||||
| seed | ------------------------------------------------------------------------GUUGAAU------------------------------ | 1 | novel | ||||
| seed | ------------------------------------------------------------GGCAGUG------------------------------------------ | 1 | miR-34a/34c/449a | ||||
| seed | -------------------------------------------------------------------------------CAGCACA----------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------TAGGTAGGATTTGCCAGCACAGT---------------------------------------------------------------------- | 23 | - | - | - | 29 | 1 | |
| --------------------------------------------------------------------TGAGGTTGAATCAGCACAGA--------------------- | 20 | - | 1 | - | 5 | - | |
| ----------------TAGGTAGGATTTGCCAGCACAG----------------------------------------------------------------------- | 22 | - | - | - | 2 | - | |
| ----------------TAGGTAGGATTTGCCAGCAC------------------------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| --------------------------------------------------------------------------TGAATCAGCACAGATCTTG---------------- | 19 | - | - | 1 | 1 | - | |
| ----------------TAGGTAGGATTTGCCAGCACAGTTCC------------------------------------------------------------------- | 26 | 1 | - | - | 1 | - | |
| --------------------------------------------------------------------------TGAATCAGCACAGATCTTGG--------------- | 20 | 1 | - | - | 1 | - | |
| -----TCACGTGGCGCTAGGTAGGA------------------------------------------------------------------------------------ | 20 | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------AATCAGCACAGATCTTGGGCCA----------- | 22 | - | - | - | 1 | - | |
| ----------------TAGGTAGGATTTGCCAGCACA------------------------------------------------------------------------ | 21 | - | - | - | 1 | - | |
| ----------------------------------------------------------------------------AATCAGCACAGATCTTGG--------------- | 18 | - | - | - | 1 | - | |
| ----------------TAGGTAGGATTTGCCAGC--------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| -----TCACGTGGCGCTAGGTAG-------------------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ----------------TAGGTAGGATTTGCCAGCA-------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| -----------------------------------------------------------TGGCAGTGCTGAGGTTGAA------------------------------- | 19 | - | - | - | 1 | - | |
| -----------------------------------------------------------------------GGTTGAATCAGCACAGATC------------------- | 19 | - | - | - | 1 | - | |
| --------------------------------------------------------------------------TGAATCAGCACAGATCTT----------------- | 18 | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------TCAGCACAGATCTTGGGCC------------ | 19 | - | - | - | 1 | - | |
| rat | cctgctcacgtggcgcTAGGTAGGATTTGCCAGCACAGTtccatctcagggctgccccgtggcagtgctgaggttgaatcagcacagatcttgggccaagaaggcagga | ||||||
| ************************************************************************************************************* | |||||||
| rat | ((((((....((((.(((....(((((((...((...((((.(((((((.((((((....)))))).))))))).))))..)).))))))))))))))....)))))). | 0.850 -50.40 | |||||
| rat | chromosome:20:5517472:5517580:-1 | intergenic |
novel_cloningOK_5varHIGH_randfoldOK (2 loci)
block215202_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block215202_cand 3arm | 3 | 0 | 0 | 0 | 4 | 2 | 0 | 2 | 3 | 2 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block215202_cand 3arm | 0.000 | 0 | 0 | 0 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 |
block215202 [novel_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.61/0.70 | 18/23/0.75 | 0.0 2.4 | 0.0 4.1 | 1 15 | 0 0 | 1 6 | 0 0 | 41 29 | -2 2 | 3arm_loop 3arm | 1 1 | nd nd | 0.22 0.15 | 1 1 | 16 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -------------------------------------------------------------AGCUCCC-------------------------------------------- | 8 | novel | |||||
| seed | ------------------------------------------------------------AAGCUCC--------------------------------------------- | 6 | novel | |||||
| seed | ----------------------------------------------------------GCAAGCU----------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------GGCAGCA--------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T3S1 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCAG------------------------------- | 21 | 1 | 1 | - | 1 | - | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCA-------------------------------- | 20 | 1 | - | - | - | 1 | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCCAGCC----------------------------- | 23 | - | - | 1 | - | - | 1 | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCCAG------------------------------- | 22 | - | 1 | 1 | - | - | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCC--------------------------------- | 20 | - | 1 | - | - | 1 | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCGCCA-------------------------------- | 21 | - | - | - | - | 1 | - | |
| ------------------------------------------------------------AAGCTCCCCTACAGCCGCC--------------------------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------------------------------------AGGCAGCAAGCTCCCCTA----------------------------------------- | 18 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------CAAGCTCCCCTACAGCCG----------------------------------- | 18 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------AGCAAGCTCCCCTACAGCC------------------------------------ | 19 | - | - | - | 1 | - | - | |
| rat | accctggcattgcagagtgcaaccctagggcgggtggggggtgctcgctgcagAGGCAGCAAGCTCCCCTACAGCCGCCAGCCttcactttgcttttgcgcacaaaagggtc | |||||||
| **************************************************************************************************************** | ||||||||
| -------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000001682 ENSRNOG00000001250 Lfng | |||||||
| rat | (((((.(((..((((((((.((..((..(((((.(((((((.(((.(((((....))))).))).))))).)).)))))))..))))))))))...))).......))))). | 0.980 -56.70 | ||||||
| rat | chromosome:12:14502315:14502426:1 | Opposite_strand|Intronic_coding|ENSRNOT00000001682|ENSRNOG00000001250 ## ENSRNOG00000001250|protein_coding|Lfng|Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase). [Source:UniProtKB/Swiss-Prot;Acc:Q924T4] |
block2247995_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2247995_cand 5arm | 0 | 2 | 1 | 0 | 0 | 0 | 0 | 1 | 7.500 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2247995_cand 5arm | 0 | 0.000 | 0.000 | 0 | 0 | 0 | 0 | 0.000 | 0.000 | 0.000 |
block2247995 [novel_cloningOK_5varHIGH_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.44/0.60 | 18/22/0.85 | 0.0 4.0 | 0.0 5.8 | 4 5 | 0 0 | 2 5 | 0 0 | 5 11 | 22 9 | 5arm 5arm | 1 1 | nd nd | 0.30 0.17 | 4 3 | 13 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------GGUUCAA----------------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | -------------------GCCUGAU---------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -CACUUGG---------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------CUUGCCU------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------CUCUUGC--------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------AGCUCUU----------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----UUGGUUC------------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----UGGUUCA------------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T4S2 | T5S1 | T5S2 | |||
| -----TGGTTCAAGCTCTTGCCTGA----------------------------------------------------------------------------- | 20 | 1 | - | - | 4 | - | |
| ------------------TGCCTGATTCACCCACCAGC---------------------------------------------------------------- | 20 | - | - | 1 | - | - | |
| -----------AAGCTCTTGCCTGATTCA------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | |
| -------------GCTCTTGCCTGATTCACCCACC------------------------------------------------------------------- | 22 | 1 | - | - | - | - | |
| ----TTGGTTCAAGCTCTTGCCTGA----------------------------------------------------------------------------- | 21 | - | - | - | 1 | - | |
| ------------------TGCCTGATTCACCCACCA------------------------------------------------------------------ | 18 | - | - | - | 1 | - | |
| TCACTTGGTTCAAGCTCTTG---------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | |
| ---------------TCTTGCCTGATTCACCCACCA------------------------------------------------------------------ | 21 | - | - | - | - | 1 | |
| ---CTTGGTTCAAGCTCTTGCCTGA----------------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| rat | TCACTTGGTTCAAGCTCTTGCCTGATTCACCCACCAGCTTTATCTGTTTTCTGCAGATATGTGGGGCAGATTGGGTCAGGCACTTGTCTCTCAGGGGA---- | ||||||
| mouse | -----TGGTTCAAACTCTTGCCTGAGTCACCCACCAGCTTTTTCTGTTTTCTGCAGATATCTGGGGCAGATTGGCTCAGGAATTTGTCTCTCAGGAGAACCT | ||||||
| ******** *********** *************** ****************** ************* ***** * ************ ** | |||||||
| rat | ...(((((..((((....((((((((((((((((......(((((((.....))))))).)))))......)))))))))))))))....)))))... | 0.990 -35.00 | |||||
| mouse | .(((((....((((((((((((((.((.((((.....(((((.....)))))...)))))).....)))))))))...........)))))))))). | 0.508 -32.80 | |||||
| rat | chromosome:7:112756454:112756551:1 | intergenic |
| mouse | chromosome:15:74484599:74484736:1 | intergenic |
novel_cloningOK_shortStem_mirtron (2 loci)
block1033056_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1033056_cand 3arm | 5 | 3 | 1 | 0 | 1 | 2 | 1 | 2 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1033056_cand 3arm | 0.000 | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 |
block1033056 [novel_cloningOK_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.55/0.58 | 18/21/0.81 | 0.0 | 0.8 | 16 | 0 | 8 | 0 | 4 | 1 | 3arm | 1 | 0 | 0.17 | 2 | 16 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------UGCCAAC----------------- | 16 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| --------------------------------------------CTGCCAACTTTCTCTGCCCAG---- | 21 | 3 | 2 | 1 | 1 | - | 1 | 1 | - | |
| --------------------------------------------CTGCCAACTTTCTCTGCCCA----- | 20 | 1 | 1 | - | - | 2 | - | - | - | |
| --------------------------------------------CTGCCAACTTTCTCTGCC------- | 18 | 1 | - | - | - | - | - | - | 1 | |
| --------------------------------------------CTGCCAACTTTCTCTGCCC------ | 19 | - | - | - | - | - | - | 1 | - | |
| rat | gaagtttgggggcctctgggaaaggcggcctcaaggctaaccccCTGCCAACTTTCTCTGCCCAGgctt | |||||||||
| ********************************************************************* | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000026651 ENSRNOG00000019666 RGD1309471 | |||||||||
| rat | .(((((...((((....(((((((..(((....(((.......))))))..))))))).)))).))))) | 0.690 -23.60 | ||||||||
| rat | chromosome:1:211541241:211541309:1 | Same_strand|Intronic_coding|ENSRNOT00000026651|ENSRNOG00000019666 ## ENSRNOG00000019666|protein_coding|RGD1309471|SAPK substrate protein 1. [Source:UniProtKB/Swiss-Prot;Acc:Q499N6] |
block2440651_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2440651_cand 3arm | 9 | 2 | 0 | 1 | 1 | 4 | 1 | 0 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2440651_cand 3arm | 0.000 | 0.000 | 0 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0 | 0.000 |
block2440651 [novel_cloningOK_shortStem_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.50/0.58 | 18/23/0.79 | 0.6 | 1.2 | 19 | 0 | 7 | 0 | 3 | 20 | 3arm | 1 | 0 | 0.23 | 2 | 19 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | --------------------------------------------------------------------------UCCUUAA----------------- | 12 | novel | ||||||
| seed | -------------------------------------------------------------------------UUCCUUA------------------ | 7 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| -------------------------------------------------------------------------TTCCTTAACAGGCCCTCCCAGA--- | 22 | 2 | - | 1 | - | 3 | 1 | - | |
| ------------------------------------------------------------------------ATTCCTTAACAGGCCCTCCCAGA--- | 23 | 3 | 1 | - | - | - | - | - | |
| -------------------------------------------------------------------------TTCCTTAACAGGCCCTCCCAG---- | 21 | 2 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------ATTCCTTAACAGGCCCTC-------- | 18 | 1 | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------ATTCCTTAACAGGCCCTCC------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------TTCCTTAACAGGCCCTCCCA----- | 20 | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------------------------TTCCTTAACAGGCCCTCCC------ | 19 | - | - | - | 1 | - | - | - | |
| rat | tgtctgtttgagcagcatgcaaagggtttctgctgggttctcacacagaactctgacttcctcctggcgagtATTCCTTAACAGGCCCTCCCAGAtac | ||||||||
| ************************************************************************************************** | |||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>> | ENSRNOT00000011358 ENSRNOG00000008554 Slc9a9 | ||||||||
| rat | ((((((...(((..((.((..(((((...((((..((........(((....))).......))..)).))...)))))..)).)).))).)))))). | 0.660 -26.86 | |||||||
| rat | chromosome:8:100322932:100323029:1 | Same_strand|Boundary_coding|ENSRNOT00000011358|ENSRNOG00000008554 ## ENSRNOG00000008554|protein_coding|Slc9a9|solute carrier family 9 (sodium/hydrogen exchanger), member 9 Gene [Source:MGI Symbol;Acc:MGI:2679732] |
novel_cloningOK_shortStem_randfoldOK (2 loci)
block1552843_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1552843_cand 3arm | 0 | 1 | 6 | 11 | 6 | 6 | 1 | 2 | 0 | 1 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block1552843_cand 3arm | 0 | 0.000 | 0.000 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0 | 0.000 |
block1552843 [novel_cloningOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.35/0.37 | 19/20/0.88 | 0.0 | 0.0 | 25 | 0 | 8 | 0 | 2 | 6 | 3arm | 1 | nd | 0.15 | 2 | 34 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------GUGUUUU-------------- | 34 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| --------------------------------------TGTGTTTTGTGTGTGAATGT-- | 20 | 1 | 6 | 9 | 6 | 4 | 1 | 2 | 1 | |
| --------------------------------------TGTGTTTTGTGTGTGAATG--- | 19 | - | - | 2 | - | 2 | - | - | - | |
| rat | tacatacatacatacatacatacatacatacatatgttTGTGTTTTGTGTGTGAATGTac | |||||||||
| ************************************************************ | ||||||||||
| ---------------------------------------------------------------------- | ENSRNOT00000008688 ENSRNOG00000006617 Cntnap2 | |||||||||
| rat | (((((.((((((((.(((((.(((((......))))).)))))..)))))))).))))). | 1.000 -19.70 | ||||||||
| rat | chromosome:4:73743080:73743139:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000008688|ENSRNOG00000006617 ## ENSRNOG00000006617|protein_coding|Cntnap2|contactin associated protein-like 2 Gene [Source:MGI (curated);Acc:Cntnap2-001] |
block2247731_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2247731_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 11 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| block2247731_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 | 0.001 | 0 |
block2247731 [novel_cloningOK_shortStem_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.48/0.48 | 23/23/1.00 | 0.0 | 0.0 | 11 | 0 | 2 | 0 | 0 | 33 | 3arm | 1 | nd | 0.14 | 3 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------------CAACAUC--------------- | 12 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --------------------------------------------------------------------------------------TCAACATCTGGCTGTTACTCCAG | 23 | 1 | 11 | |
| rat | ctggagtgttcatagcagtgtctgagcttccactaacactccacactcaccaggtggtgtggttggcagttggaagtgtttggtcaTCAACATCTGGCTGTTACTCCAG | |||
| ************************************************************************************************************* | ||||
| rat | ((((((((...(((((.((((.((((((((((((..((..((((((.(((...))))))))).))..))).)))))).........)))))))...))))))))))))) | 0.930 -41.80 | ||
| rat | chromosome:7:112744822:112744930:1 | intergenic |
novel_lenNOK_cloningHIGH_multiarm_DicerOK (2 loci)
sblock3311_cand
| absolute | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3311_cand 5arm | 0 | 0.500 | 0 | 0 | 0 | 0 | 0 | 0 | 28.167 | 1 |
| sblock3311_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5.333 | 0 |
| normalized | T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 |
| sblock3311_cand 5arm | 0 | 0.000 | 0 | 0 | 0 | 0 | 0 | 0 | 0.002 | 0.000 |
| sblock3311_cand 3arm | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.000 | 0 |
sblock3311 [novel_lenNOK_cloningHIGH_multiarm_DicerOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.56/0.67 | 18/25/0.32 | 0.0 0.8 0.0 1.4 | 0.3 2.0 0.3 0.5 | 34 5 3 8 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 10 15 14 5 | 22 13 4 8 | 5arm 5arm 3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.16 0.22 0.22 0.26 | 2 2 2 4 | 74 | 3 | 3 | 3 |
| Member of family novel213 (seed GCAGAUG): sblock3311_cand, sblock3624_cand |
| reads | miRBase family seed | ||||
| seed | -----------GCAGAUG---------------------------------------------------------------------------- | 55 | novel | ||
| seed | ----------------------------------------------------------------------CCAGACA----------------- | 3 | novel | ||
| seed | --------------------------------------------------------------GCCUGCU------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------------------UCCAGAC------------------ | 3 | novel | ||
| seed | ----------------UGGACUG----------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------CAGAUGG--------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------------------------------GCUUCCA--------------------- | 2 | novel | ||
| seed | -----------------GGACUGG---------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------GACUGGA--------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------AUGCAGA------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| ----------TGCAGATGGACTGGAAGGG----------------------------------------------------------------- | 19 | 1 | 24 | 2 | |
| ----------TGCAGATGGACTGGAAGG------------------------------------------------------------------ | 18 | - | 10 | - | |
| ----------TGCAGATGGACTGGAAGGGG---------------------------------------------------------------- | 20 | - | 6 | - | |
| ----------TGCAGATGGACTGGAAGGGGCA-------------------------------------------------------------- | 22 | - | 5 | - | |
| ----------TGCAGATGGACTGGAAGGGGCAG------------------------------------------------------------- | 23 | - | 3 | - | |
| ---------------------------------------------------------------------TCCAGACATGGGGTGCAGCA----- | 20 | - | 3 | - | |
| --------------------------------------------------------------------TTCCAGACATGGGGTGCAG------- | 19 | - | 2 | - | |
| ---------------ATGGACTGGAAGGGGCAG------------------------------------------------------------- | 18 | - | 2 | - | |
| ----------TGCAGATGGACTGGAAGGGGC--------------------------------------------------------------- | 21 | - | 2 | - | |
| -----------------------------------------------------------------TGCTTCCAGACATGGGGTGCAGCA----- | 24 | - | 2 | - | |
| ----------TGCAGATGGACTGGAAGGGGCAGCA----------------------------------------------------------- | 25 | - | 2 | - | |
| -----------GCAGATGGACTGGAAGGGG---------------------------------------------------------------- | 19 | - | 2 | - | |
| -------------------------------------------------------------TGCCTGCTTCCAGACATGG-------------- | 19 | - | 2 | - | |
| --------TATGCAGATGGACTGGAAGGGGCAG------------------------------------------------------------- | 25 | - | 1 | - | |
| --------------------------------------------------------------------TTCCAGACATGGGGTGCAGCA----- | 21 | - | 1 | - | |
| -------------------------------------------------------------TGCCTGCTTCCAGACATG--------------- | 18 | - | 1 | - | |
| ----------------TGGACTGGAAGGGGCAGCATGG-------------------------------------------------------- | 22 | - | 1 | - | |
| ----------------TGGACTGGAAGGGGCAGC------------------------------------------------------------ | 18 | - | 1 | - | |
| -----------------GGACTGGAAGGGGCAGCATG--------------------------------------------------------- | 20 | - | 1 | - | |
| rat | GCAGGGAGTATGCAGATGGACTGGAAGGGGCAGCATGGGGAAGGAGAGGGCAGGACAGCCATGCCTGCTTCCAGACATGGGGTGCAGCAGCTGT | ||||
| mouse | ----------TGCAGATGGGCTGGAAGGGGGTGTG-GGGGAACGAGAGGGCAGGGCAGCCATGCTTGCTTCCAGACATGGGATGCA-------- | ||||
| ********* ********** * ****** *********** ********* **************** **** | |||||
| rat | ((((...((.((((.(((..((((((((((((................(((......))).))))).))))))).)))....))))))..)))) | 0.500 -28.03 | |||
| mouse | .(((.(((..(((((((.((((((( (.....................)))))))).))))))).)))....))). | 0.896 -26.00 | |||
| rat | chromosome:12:44282480:44282573:-1 | intergenic |
| mouse | chromosome:5:113784681:113784814:1 | intergenic |
| Back to summary page | candidate novel miRNAs: | Page 1 | Jump 10 pages back | Previous page | Page 175 | Next page | Page 178 |
©2008 InteRNA Genomics B.V.