other hairpins
block96 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.066 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 10 | 3arm | 2 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------GGUCACC------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------------------------------------------------------------------TGGTCACCCCTTTGAGAA-------------- | 18 | 1 | |
| rat | tgggtttcaaaattttactgtgagataatcttggaggttgttacctattgaaggttgctgtatgcatgagatgTGGTCACCCCTTTGAGAAtttctacaaaccca | ||
| ********************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000004346 ENSRNOG00000003198 RGD1305733 | ||
| rat | .(((((............((((((((..(((..((((..((.(((((((......(((.....)))...)))).))).)).))))..)))))))).)))))))). | 0.810 -27.50 |
| rat | chromosome:10:185147:185251:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000004346|ENSRNOG00000003198 ## ENSRNOG00000003198|protein_coding|RGD1305733|Uncharacterized protein C16orf45 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q5FVJ5] |
block280 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 4 | 0 | 2 | 0 | 16 | 4 | 5arm | 2 | nd | 0.22 | 2 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------CAAAUGU------------------------------------------------------------------------------- | 4 | novel | |
| len | cloning frequencies | |||
| T1S2 | T2S1 | |||
| ----------------ACAAATGTCTAGGCTTGA--------------------------------------------------------------------- | 18 | 1 | 3 | |
| rat | cggaatggcaaagtacACAAATGTCTAGGCTTGAgtcctgctgtcattctttttcttggacatgtaaccctaggcaagctgtgtgcctcagtcacaagtgtcc | |||
| ******************************************************************************************************* | ||||
| rat | .(((.((((...(((((((..((((((((.(((.((((...................))))...))).))))))))...)))))))....))))......))) | 0.790 -28.91 | ||
| rat | chromosome:10:449008:449110:-1 | intergenic |
block311 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.956 | no | no | 0.47/0.50 | 18/20/0.50 | 0.0 | 0.8 | 4 | 0 | 3 | 0 | 7 | 14 | 5arm | 1 | 14 | 0.28 | 2 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------GCAGCAU-------------------------------------------------------------------------------- | 4 | miR-103/107 | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| -------AGCAGCATTGTGCAGGTATG-------------------------------------------------------------------- | 20 | 2 | - | - | |
| -------AGCAGCATTGTGCAGGTAT--------------------------------------------------------------------- | 19 | - | - | 1 | |
| -------AGCAGCATTGTGCAGGTA---------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | ggtcatcAGCAGCATTGTGCAGGTATGtgagagagggggccaggagggtaacgtagggactctcagaatcctaccatgttcagcagcagcagccg | ||||
| *********************************************************************************************** | |||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061841 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061840 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061838 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061835 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061834 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046607 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061831 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041358 ENSRNOG00000032748 LOC688339 | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061830 ENSRNOG00000032748 LOC688339 | ||||
| rat | (((.....((.((..((.(((((((.......(((((..((..............))..))))).......)))).))).)))).))....))). | 0.650 -20.38 | |||
| rat | chromosome:10:490644:490738:-1 | Same_strand|Boundary_coding|ENSRNOT00000044108|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] |
block313 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 22 | 7 | 5arm | 1 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------CCUGUUU-------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| ----------------------TCCTGTTTGCATCAGCAG---------------------------------------------------------- | 18 | 1 | |
| rat | ggaggaataatctgttttttttTCCTGTTTGCATCAGCAGcataaggtggcgtcttatctctgaatgcctgcaaggtttgtctcacctttatccctct | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061841 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061840 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061838 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061835 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061834 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046607 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061831 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041358 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061830 ENSRNOG00000032748 LOC688339 | ||
| rat | (((((.((((...((........(((((..(((((((.((.((((((.....)))))))))))).)))..))).))........))..)))).))))) | 0.930 -23.89 |
| rat | chromosome:10:495116:495213:-1 | Same_strand|Intronic_coding|ENSRNOT00000061841|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] ## {Repeats: dust 495191 495192 0 class=dust} |
block323 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.229 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 23 | 8 | 3arm | 2 | nd | 0.28 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------GGGGUGU--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -----------------------------------------------------------------------TGGGGTGTGTTTGGAGTT----------------------- | 18 | 1 | |
| rat | ccttccctcctaagcacggggacccagaccacccactgcttcatattcaatccctgctctaccatatgctgTGGGGTGTGTTTGGAGTTggccctcttttgtcatggttagg | ||
| **************************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046607 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061831 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041358 ENSRNOG00000032748 LOC688339 | ||
| rat | (((..((..........(((((((((((((((((...((..(((((.................)))))..)).))))).)))))).))...))))..........))..))) | 0.960 -30.58 |
| rat | chromosome:10:519649:519760:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000061835|ENSRNOG00000032748 ## Same_strand|Intronic_coding|ENSRNOT00000044108|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] |
block554 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 4 | 0 | 2 | 0 | 36 | 5 | 3arm | 3 | nd | 0.28 | 3 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------GGAGUGU---------------------------------------------- | 5 | miR-122 | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ----------------------------------------------------------------TGGAGTGTGACCTTTTAA------------------------------------ | 18 | 4 | 1 | |
| rat | gtgcttagctgtgtccttttgctgtggcaacctaataatgggtccttccaagcagatctctgacTGGAGTGTGACCTTTTAAtattcccaccagagtaggactcagaaggacaggcac | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000061743 ENSRNOG00000040135 LOC683847 | |||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000061742 ENSRNOG00000040135 LOC683847 | |||
| rat | ((((((..(((.(((((....((((((.((..((.(((.(((((.(((((..(((....)))..)))))...))))).))).)))).)))).))...))))).)))......)))))) | 0.420 -38.60 | ||
| rat | chromosome:10:909512:909629:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000061742|ENSRNOG00000040135 ## ENSRNOG00000040135|protein_coding|LOC683847| |
block556 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 23 | 3arm | 3 | nd | 0.11 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------ACCAUGU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------------------------------------AACCATGTGGCAAGGCTGA------------- | 19 | 1 | |
| rat | tgctaaagtgggaggagatagtagttttgttacaaggtccactgtttcctcagttcaggcaaagatggctgacagcgatggaacactcAACCATGTGGCAAGGCTGAcattatatggtat | ||
| ************************************************************************************************************************ | |||
| rat | (((((.((((...........(((((((((((((.(((....((((((.((.((((((.((....)).))))..)))).))))))....))).))))))))))))).))))...))))). | 0.770 -33.30 |
| rat | chromosome:10:917121:917240:-1 | intergenic |
block654 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.265 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 4 | 3arm | 1 | nd | 0.22 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------AAAAACU-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----------------------------------------TAAAAACTTTAAGCCCCT---------- | 18 | 1 | |
| rat | ctgcaagaggaattcttaaactgtttatcaatgaacgattTAAAAACTTTAAGCCCCTctgacccgga | ||
| ******************************************************************** | |||
| rat | (((..(((((....((((((..(((((((.......)))....))))))))))..)))))....))). | 0.720 -10.20 |
| rat | chromosome:10:1149965:1150032:-1 | intergenic |
block695 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.197 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 23 | 3arm | 3 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------ACCAUGU------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| -------------------------------------------------------------------------------AACCATGTGGCAAGGCTGA------------------- | 19 | 1 | |
| rat | gggaagagacagtagttttgttacaaggtccactgtttcctcagttcaggcaaagatggctgacagcgatggaacactcAACCATGTGGCAAGGCTGAcattatatggtattagctc | ||
| ********************************************************************************************************************* | |||
| rat | (((..((..((.(((((((((((((.(((....((((((.((.((((((.((....)).))))..)))).))))))....))).)))))))))))))........))...))..))) | 0.560 -31.70 |
| rat | chromosome:10:1228129:1228245:-1 | intergenic |
block704 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.579 | no | no | 0.11/0.11 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 9 | 3arm | 7 | nd | 0.26 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------UUUUAUU------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -----------------------------------------------------------------------TTTTTATTTTGCTATTTTT------------------------- | 19 | 1 | |
| rat | aaatatatatataataaaaaattaaaaactgttttagtgggttaacaatacttaattgtaaaaattatttgTTTTTATTTTGCTATTTTTtgatttaacattattttaggattta | ||
| ******************************************************************************************************************* | |||
| rat | ((((......(((((...((((((((((......(((..((.(((.((((..(((((.....)))))..)))).))).))..))).))))))))))...)))))......)))). | 0.970 -13.70 |
| rat | chromosome:10:1244833:1244947:-1 | intergenic ## {Repeats: dust 1244858 1244877 0 class=dust} |
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©2008 InteRNA Genomics B.V.