miR-Intess: classification

other hairpins

novel_lenNOK_loopOverlap_nonpairedHIGH (12592 loci)

block1877286 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.42/0.53	19/19/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	18 22	-2 -6	5arm_loop 5arm_loop	1 1	nd nd	0.32 0.47	3 7	2	2	na	na

		reads	miRBase family seed
seed	-----------------------UCCAGAG----------------------------------------------	1	novel
seed	-------------------UGGAUCC--------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T4S1
	------------------CTGGATCCAGAGTTAGCCT---------------------------------------	19	1	-
	----------------------ATCCAGAGTTAGCCTATCA-----------------------------------	19	-	1
rat	ggccactgagcatcagggCTGGATCCAGAGTTAGCCTATCAgaagctgactcagatctccatagctaagctggtta
	****************************************************************************
	--------------------------------------------------------------------------------------	ENSRNOT00000027049 ENSRNOG00000019956 NP_001101436.1
rat	(((((((.(((.....((..(((((..((((((((.........)))))))).)))))))...))).)).))))).	0.410 -25.70

rat

chromosome:5:138648697:138648772:1

block1885873 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.373	no	no	0.78/0.78	18/18/0.00	0.0	0.0	1	0	1	0	44	-4	3arm_loop	3	nd	0.56	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AAGGCGG------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------------------------------------------------CAAGGCGGGGCGCTTGGC--------------------------------------------	18	1
rat	ggcggggctattgacagggagcacagctggggcggggcacctggctgagagcacagctCAAGGCGGGGCGCTTGGCtgggagcacagctggggcggggctattaacagggagcacatgtc
	************************************************************************************************************************
rat	((((..(((.(((......(((...(((..(((...((.((..((..((.((...((.....))...)).))..))..)).))...)))..)))...))).....)))..)))...))))	0.990 -46.40

rat

chromosome:5:150368338:150368457:1

intergenic ## {Repeats: trf 41 59 0 class=trf}

block1903620 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.527	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	23	-2	5arm_loop	1	nd	0.42	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------CCCUUGG----------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	-----------------------GCCCTTGGCTCTGAACCCC-----------------------------------------------	19	1
rat	taggatgtctgctagccgctctcGCCCTTGGCTCTGAACCCCtcaggttgaagttcctgggccccgagtcggcggcgtggggaaactgg
	*****************************************************************************************
rat	(((....(((.((((((((((((((((..((..((.((((.....))))..))..)).))))...)))..)))))).))))))..))).	0.600 -31.50

rat

chromosome:5:172432211:172432299:1

intergenic

block1911116 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.52/0.52	25/25/0.00	0.0	0.0	1	0	1	0	37	-3	5arm_loop_3arm	3	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------AUGUUCC---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------GATGTTCCCTGAGCAGATGTTCCCT----------------------------------------------------------	25	1
rat	ctgagcaggtgttccctgagcaggtgttccctgagcaGATGTTCCCTGAGCAGATGTTCCCTgagcagatgttccctgagcaggtgttcctgagcagatgttcctgatgttcctgagcag
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000020178 ENSRNOG00000014879 Ttc7
rat	(((..((((...((...(((((..(((((...(((((..(((((...(((((..(((((...)))))..)))))...)))))..)))))..)))))..)))))..))....))))..)))	0.960 -44.80

rat

chromosome:6:10782010:10782129:-1

Opposite_strand|Boundary_non-coding|ENSRNOT00000061747|ENSRNOG00000014879 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000020178|ENSRNOG00000014879 ## ENSRNOG00000014879|protein_coding|Ttc7|Ttc7 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G027] ## {Repeats: trf 333 358 0 class=trf}

block1911117 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.52/0.52	25/25/0.00	0.0	0.0	1	0	1	0	37	-3	5arm_loop_3arm	3	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------AUGUUCC---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------------GATGTTCCCTGAGCAGATGTTCCCT----------------------------------------------------------	25	1
rat	ctgagcaggtgttccctgagcaggtgttccctgagcaGATGTTCCCTGAGCAGATGTTCCCTgagcagatgttccctgagcaggtgttcctgagcagatgttcctgatgttcctgagcag
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000020178 ENSRNOG00000014879 Ttc7
rat	(((..((((...((...(((((..(((((...(((((..(((((...(((((..(((((...)))))..)))))...)))))..)))))..)))))..)))))..))....))))..)))	0.960 -44.80

rat

chromosome:6:10782010:10782129:-1

block1922263 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.489	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	18	-4	3arm_loop	2	nd	0.44	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------ACUGUCA----------------------------	1	novel
		len	cloning frequencies
			T2S2
	----------------------------------GACTGTCACAGGCACTGT------------------	18	1
rat	actgaggtaaggcatgtattcagatccttgatgaGACTGTCACAGGCACTGTttgatgatgtcactctgt
	**********************************************************************
rat	((.(((....(((((.((..(((..(((((((......)))).)))..)))..))...))))).))).))	0.780 -14.80

rat

chromosome:6:29980173:29980242:-1

intergenic

block1931800 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.562	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	23	-1	5arm_loop	2	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------AUUAUAC-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	-----------------------GATTATACCAGGGAATGAAGATACC--------------------------------------------------------------	25	1
rat	agaactattaaatgtagacttatGATTATACCAGGGAATGAAGATACCaaaataaacatgtcctaagtacttgtttactggttattctgagtgcgtattaagatgattct
	**************************************************************************************************************
rat	((((.((((..((((..(((((.(((...(((((..(((.(((.(((...................)))))))))..))))).))).))))))))).....)))).))))	0.830 -16.41

rat

chromosome:6:49184979:49185088:-1

intergenic

block2938671 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.067	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	12	-2	5arm_loop	6	nd	0.47	3	1	1	na	na

		reads	miRBase family seed
seed	-------------GUGGCUG-----------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	------------TGTGGCTGAGGACTTTGAT------------------------------	19	1
rat	aaagttctacaaTGTGGCTGAGGACTTTGATtgtacattgtttttggttttgttcttcttt
	*************************************************************
rat	((((....((((...(((..(((((..((......))..)))))..)))))))....))))	1.000 -11.60

rat

chromosome:X:13905249:13905309:1

intergenic

novel_lenNOK_loopOverlap (9108 loci)

block466 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.081	no	no	0.72/0.74	18/19/0.00	0.5	1.0	2	0	2	0	8	-2	3arm	1	nd	0.21	2	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------GGAGUGG-------------------	1	novel
seed	--------------------------------------GGGAGUG--------------------	1	novel
		len	cloning frequencies
			T4S1	T4S2
	-------------------------------------TGGGAGTGGGACCCAGGC----------	18	1	-
	--------------------------------------GGGAGTGGGACCCAGGCAC--------	19	-	1
rat	gctcagactcttgctctgagaaattccctccaactcaTGGGAGTGGGACCCAGGCACtctgtgta
	*****************************************************************
	---------------------------------------------------------------------------	ENSRNOT00000037611 ENSRNOG00000000029 MYH11_RAT
	---------------------------------------------------------------------------	ENSRNOT00000044317 ENSRNOG00000000029 MYH11_RAT
	---------------------------------------------------------------------------	ENSRNOT00000050218 ENSRNOG00000000029 MYH11_RAT
	---------------------------------------------------------------------------	ENSRNOT00000030661 ENSRNOG00000000029 MYH11_RAT
rat	((.((((....(((.(((.....((((((((........)))).))))..)))))).)))).)).	0.670 -18.90

rat

chromosome:10:715035:715099:-1

block1362 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.053	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	26	-2	3arm_loop	1	nd	0.17	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------AGCAGGU------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	-------------------------------------------------TAGCAGGTGTCTGGCTCA--------------------------	18	1
rat	gtgggagtagcgttgcagatttgagaaggacagatagcttagcaggcatTAGCAGGTGTCTGGCTCAtttgtaatggaaaacgagcctccaca
	*********************************************************************************************
rat	((((..((..(((((((((..((((.....((((((.((..((........)))).)))))).)))))))))))))........))..)))).	0.830 -27.40