other hairpins
novel_lenNOK_bulgeHIGH (5838 loci)
block1869588 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 19 | 3arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------GUAUACA---------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -----------------------------------------------------------------------GGTATACATCATATGTAA------ | 18 | 1 | |
| rat | catatttatatatttatacttaacagtgacttatatccatacacctaacttaatggttcggggtttcaaatGGTATACATCATATGTAAtattgg | ||
| *********************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------------- | ENSRNOT00000010680 ENSRNOG00000007706 Prkaa2 | ||
| rat | ((...((((((((.((((((.......(((((....((((............))))....)))))......))))))....))))))))...)). | 0.420 -14.72 |
| rat | chromosome:5:126032121:126032215:1 | Opposite_strand|Intronic_coding|ENSRNOT00000010680|ENSRNOG00000007706 ## ENSRNOG00000007706|protein_coding|Prkaa2|5'-AMP-activated protein kinase catalytic subunit alpha-2 (EC 2.7.11.1) (AMPK alpha-2 chain). [Source:UniProtKB/Swiss-Prot;Acc:Q09137] |
block914211 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.074 | no | no | 0.40/0.40 | 25/25/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 14 | 4 | 5arm | 1 | nd | 0.28 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------ACCAAAA----------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------TACCAAAATCCTACAAGGGGAAAAG------------------------------------------------------------ | 25 | 2 | |
| rat | agttgcctggaaaaTACCAAAATCCTACAAGGGGAAAAGcaaaattgttttgcttcactctttatggggaagggtttgaatagcttttcttagttgctc | ||
| *************************************************************************************************** | |||
| rat | (((.((..((((((.(((....(((((.((((((..(((((((.....)))))))..)))))).)))))...))).........))))))..)).))). | 0.570 -24.80 |
| rat | chromosome:1:208477602:208477700:-1 | intergenic |
block1894909 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.72/0.72 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 12 | 5arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------GCUGCAG---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| --------GGCTGCAGCCTCCTTCGC------------------------------------------------------------ | 18 | 1 | |
| rat | gcacgccaGGCTGCAGCCTCCTTCGCgactcttggatgtggggcggggctaggggaaccggagggaggaatgggaaagcgggggtg | ||
| ************************************************************************************** | |||
| rat | .(((.((..(((....((((((((.((.(((((((.((.....))...)))))))...))))))))))........))).)).))) | 0.820 -32.60 |
| rat | chromosome:5:160621641:160621726:1 | intergenic |
block1908249 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.216 | no | no | 0.63/0.65 | 19/20/0.50 | 1.0 | 1.5 | 2 | 0 | 1 | 0 | 10 | 17 | 3arm | 1 | nd | 0.30 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------CCGUUGC---------------------- | 1 | novel |
| seed | ---------------------------------------------------------------------------UGCCGUU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------------------------GCCGTTGCCTCCAGACCTTC---------- | 20 | 1 | |
| --------------------------------------------------------------------------ATGCCGTTGCCTCCAGACC------------- | 19 | 1 | |
| rat | gcctttgatgtactctgtgaggctggtttcttgttaagttcgtgatgtcaacaccagtgacgactgtgctttcgATGCCGTTGCCTCCAGACCTTCagcagaagca | ||
| ********************************************************************************************************** | |||
| rat | ((.((((.((...((((.(((((((((...(((..((((.((...(((((.......)))))..)).)))).))).))))..)))))))))....)).)))).)). | 0.960 -29.40 |
| rat | chromosome:6:6750169:6750274:-1 | intergenic |
block1908900 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.451 | no | no | 0.61/0.65 | 18/20/0.40 | 0.2 | 0.4 | 5 | 0 | 4 | 0 | 35 | 3 | 5arm | 1 | nd | 0.28 | 4 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------AGUUCCA----------------------------------------------------------------------- | 4 | novel | |||
| seed | -------------------------------------GUUCCAC---------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T3S1 | T3S2 | T4S2 | T5S2 | |||
| -----------------------------------GAGTTCCACCAGTCCGCGA------------------------------------------------------------ | 19 | - | 1 | - | 1 | |
| -----------------------------------GAGTTCCACCAGTCCGCGAG----------------------------------------------------------- | 20 | 1 | - | 1 | - | |
| ------------------------------------AGTTCCACCAGTCCGCGA------------------------------------------------------------ | 18 | - | - | - | 1 | |
| rat | caggctgtatatagggcgcgcgctcgcgggtctccGAGTTCCACCAGTCCGCGAGctgccgacggctcgcgcggggggcaggccggggcgccgagctgcgctctcgcttctcct | |||||
| ****************************************************************************************************************** | ||||||
| ....................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000006725 ENSRNOG00000005067 Zfp36l2 | |||||
| rat | .(((........((((((((.(((((((...(((((.(((((.((....(((((((((....))))))))).)))))))....)))))))).)))))))))))).......))) | 0.990 -53.16 | ||||
| rat | chromosome:6:7534922:7535035:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000006725|ENSRNOG00000005067 ## ENSRNOG00000005067|protein_coding|Zfp36l2|zinc finger protein 36, C3H type-like 2 [Source:RefSeq_peptide;Acc:NP_001031703] ## {SimpF: 1 Eponine,oe = 0.80 -1 CpG} |
block1920418 [novel_lenNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.926 | no | no | 0.50/0.56 | 18/18/0.00 | 1.0 | 1.0 | 3 | 0 | 2 | 0 | 17 | 8 | 5arm | 1 | nd | 0.28 | 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------CUCCUGU------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------CCUGUUU---------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------UCCUGUU----------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| -----------------GCTCCTGTTTCCTTACCC-------------------------------------------------------------- | 18 | 1 | - | |
| ------------------CTCCTGTTTCCTTACCCT------------------------------------------------------------- | 18 | 1 | - | |
| -------------------TCCTGTTTCCTTACCCTG------------------------------------------------------------ | 18 | - | 1 | |
| rat | gcacatcgccgtgcgctGCTCCTGTTTCCTTACCCTGtcgagcagtgtcgctgccgctgcggagtgggcgttcagttttcgggtcatcatggctggc | |||
| ************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------- | ENSRNOT00000042760 ENSRNOG00000030768 AC157610.2 | |||
| .............................................................................................>>>>>>>>>>>>>> | ENSRNOT00000014321 ENSRNOG00000010667 D5Wsu178e | |||
| rat | ((.((..((((((....(((((((....(((((.((((((.((((.....))))))..)))).)))))....))).....))))...)))))))))) | 0.810 -28.90 | ||
| rat | chromosome:6:26096717:26096813:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000042760|ENSRNOG00000030768 ## ENSRNOG00000030768|protein_coding|AC157610.2| |
novel_nonpairedHIGH_bulgeHIGH (5657 loci)
block169 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.535 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 4 | 3arm | 2 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CACCUGA--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------TCACCTGAGCCATTTCCCCA--------------- | 20 | 1 | |
| rat | agtgtgcctcatcctggaaatggattataatgagttctacaggaaagcaattgagttaTCACCTGAGCCATTTCCCCAgtccacctgtgccat | ||
| ********************************************************************************************* | |||
| rat | .(((.((..((...((((..(((.....((((.((((.....((.(((......))).))....))))))))...))).))))..)).))))) | 0.620 -18.00 |
| rat | chromosome:10:343219:343311:-1 | intergenic |
block302 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.474 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 3 | 5arm | 1 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------CCCUUGU------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------CCCCTTGTTTTGCCCCCAAA------------------------------------------------------------ | 20 | 1 | |
| rat | gaaggcagtctgtctgtctcCCCCTTGTTTTGCCCCCAAAcccaactgtgagggccctttgtacacaacatggaggactgtttgttttttagttgccttt | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061841 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061840 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061838 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061835 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061834 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046607 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061831 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041358 ENSRNOG00000032748 LOC688339 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061830 ENSRNOG00000032748 LOC688339 | ||
| rat | ((((((((.(((...(((..((...((((.((....(((((((........)))...))))..)).)))).))..)))...........))))))))))) | 0.420 -21.94 |
| rat | chromosome:10:474722:474821:-1 | Same_strand|Intronic_coding|ENSRNOT00000061841|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] |
block338 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.535 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 4 | 3arm | 2 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CACCUGA--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------------TCACCTGAGCCATTTCCCCA--------------- | 20 | 1 | |
| rat | agtgtgcctcatcctggaaatggattataatgagttctacaggaaagcaattgagttaTCACCTGAGCCATTTCCCCAgtccacctgtgccat | ||
| ********************************************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044108 ENSRNOG00000032748 LOC688339 | ||
| rat | .(((.((..((...((((..(((.....((((.((((.....((.(((......))).))....))))))))...))).))))..)).))))) | 0.620 -18.00 |
| rat | chromosome:10:540146:540238:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000061835|ENSRNOG00000032748 ## Same_strand|Intronic_coding|ENSRNOT00000044108|ENSRNOG00000032748 ## ENSRNOG00000032748|protein_coding|LOC688339|Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:UniProtKB/Swiss-Prot;Acc:Q8CG09] |
block1577 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.671 | no | no | 0.73/0.73 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 2 | 5arm | 1 | nd | 0.41 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GGGGGUG------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------------------TGGGGGTGGGGTGGGAGTGGTG----------------------------------------------------------- | 22 | 1 | |
| rat | acatcttcaaaagacctgaatatccTGGGGGTGGGGTGGGAGTGGTGagacaattcctctgagttctccgaattcatctaaatcctgttaaggtagaactaagtgt | ||
| ********************************************************************************************************** | |||
| rat | (((.(((......((((.((((......(((((((...((((....(((.......)))......))))...)))))))......)))).))))......)))))) | 0.490 -21.70 |
| rat | chromosome:10:3534831:3534936:-1 | intergenic |
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