miR-Intess: classification

other hairpins

block823005 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.076	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	29	2	3arm	18	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------CCUUCUU---------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	--------------------------------------------------------------GCCTTCTTAAATGGTCCT-----------------------------	18	1
rat	ccaatcagaatagaaggcaggcatttccaggtgccttgttgcaggattcgcttagttttcaaGCCTTCTTAAATGGTCCTggttgctatgctctgtgtccctcggttgg
	*************************************************************************************************************
rat	((((((((.(((((..(((((((...(((((.(((...(((.((((...((((.......)))).)))))))..)))))))).)))).))))))))....)).))))))	0.990 -33.00

rat

chromosome:1:881919:882027:-1

intergenic

block88137 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.059	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	25	13	3arm	137	nd	0.26	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AGGCUGU------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	----------------------------------------------------------------------------AAGGCTGTGGGCAAGGTCA-------------------------	19	1	1
rat	tgtggatggcccctctggaaagtgtgatggccatggggcagcccagaacatcatccctgcatccactggtgatgccAAGGCTGTGGGCAAGGTCAtcccagagctgaacgggaagttcac
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000003859 ENSRNOG00000024730 Ppm1e
rat	.((((((..(((((((((.......(((((((.((..((((((.....(((((((..((....))..)))))))....))))))...)).)))))))))))))......)))..))))))	0.420 -45.81

rat

chromosome:10:75617063:75617182:1

Opposite_strand|Intronic_coding|ENSRNOT00000003859|ENSRNOG00000024730 ## ENSRNOG00000024730|protein_coding|Ppm1e|Protein phosphatase 1E (EC 3.1.3.16) (Ca(2+)/calmodulin-dependent protein kinase phosphatase N) (CaMKP-N) (CaMKP-nucleus) (CaMKN) (Partner of PIX 1) (Partner of PIX-alpha) (Partner of PIXA). [Source:UniProtKB/Swiss-Prot;Acc:Q80Z30]

block635957 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	13	12	5arm	71	nd	0.21	2	1	1	na	na

		reads	miRBase family seed
seed	--------------AUCCCAG-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------CATCCCAGAGCTGAACGGG------------------------------------------------------------------------	19	1
rat	ctgtgggcaaggtCATCCCAGAGCTGAACGGGaagctcactggcatggccttctgtgttcctatccccattgtatccgctgtggatctgacctgcagcctggag
	********************************************************************************************************
rat	((.(((((.((((((..(((.(((.((((((((((..(((.(((...)))....)))...)).))))....)).)).))).)))...))))))...))))).))	0.880 -36.80

rat

chromosome:17:92015349:92015452:-1

intergenic

block635958 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.463	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	19	10	5arm	137	nd	0.16	2	2	2	na	na

		reads	miRBase family seed
seed	--------------------AGGCUGU---------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	-------------------AAGGCTGTGGGCAAGGTCA----------------------------------------------------------------------------------	19	1	1
rat	tgcatccactggtgctgccAAGGCTGTGGGCAAGGTCAtcccagagctgaacgggaagctcactggcatggccttctgtgttcctatccccattgtatccgctgtggatctgacctgcag
	************************************************************************************************************************
rat	(((((((((.((((....(((((..(((((.((((((((.((((((((........)))))..))).)))))))).......)))))..)).)))....))))))))).......)))).	0.490 -38.71

rat

chromosome:17:92015356:92015475:-1

intergenic

block1076774 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.198	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	8	12	5arm	71	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	---------AUCCCAG----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	--------CATCCCAGAGCTGAACGGG-----------------------------------------------------------------	19	1
rat	ggcaaggtCATCCCAGAGCTGAACGGGaagctcactggcatggccttctgtgttcctacccccaatgtatccgctgtggatctgacatgccg
	********************************************************************************************
rat	((((..((((..(((.(((.(((((((.((..(((.(((...)))....)))...)).))).....)).)).))).)))...)))).)))).	0.590 -29.80

rat

chromosome:20:30228403:30228494:-1

intergenic

block1076775 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.107	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	16	10	5arm	137	nd	0.21	2	2	2	na	na

		reads	miRBase family seed
seed	-----------------AGGCUGU----------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	----------------AAGGCTGTGGGCAAGGTCA-----------------------------------------------------------------------	19	1	1
rat	atccactggtgctgccAAGGCTGTGGGCAAGGTCAtcccagagctgaacgggaagctcactggcatggccttctgtgttcctacccccaatgtatccgctgtggat
	**********************************************************************************************************
rat	((((((.((((.(((...((..(((((.((((((((.((((((((........)))))..))).)))))))).......)))))..))...)))..))))))))))	0.730 -38.00

rat

chromosome:20:30228414:30228519:-1

intergenic

block1714388 [novel_lenNOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	2	0	16	11	5arm	137	nd	0.21	2	2	2	na	na

		reads	miRBase family seed
seed	-----------------AGGCUGU------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T1S2	T5S2
	----------------AAGGCTGTGGGCAAGGTCA-------------------------------------------------------------------------	19	1	1
rat	atccactggtgctgccAAGGCTGTGGGCAAGGTCAtcccaagagctgaatgggaagctcacaggcatggccttctgtgttcctacttccaatgtatctgttgtggatc
	************************************************************************************************************
rat	((((((.(((((......((..(((((.((((((((.((..(((((........)))))...)).)))))))).......)))))..))...)))))....)))))).	0.460 -36.80

rat

chromosome:5:8009102:8009209:-1

intergenic

novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1184 loci)

block1449 [novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	41	-4	5arm_loop_3arm	2	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------CUCCAGG---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	-----------------------------------------TCTCCAGGTCTCCCCTTTT----------------------------------------------------------	19	1
rat	gtttttatttcaaagcagcttagctttcattgttcctcttgTCTCCAGGTCTCCCCTTTTggtgggtccttagagacaaggccttcttgacactggctagctctttcttccagaagac
	**********************************************************************************************************************
rat	((((((.....((((.(((.(((((.(((.......(((((((((.(((.(((.((....)).))).)))..)))))))))......)))....))))))))))))......))))))	0.900 -34.82

rat

chromosome:10:3005030:3005147:-1

intergenic

block2500 [novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	43	-3	5arm_loop	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------CAACUUC------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	-------------------------------------------CCAACTTCTGCTCTGGGC--------------------------------------------------	18	1
rat	aagctttgagtctcaggctccttgccaggtttgggcctctctcCCAACTTCTGCTCTGGGCccaggcagttgggaggggaatttggagaaaggcttgagtctgcccagctt
	***************************************************************************************************************
rat	(((((...((.((((((((..((.((((((((......((((((((((...(((.(((....)))))))))))))))))))))))).))..)))))))).))....)))))	0.820 -47.40

rat

chromosome:10:5275101:5275211:-1

intergenic

block3914 [novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	34	-4	5arm_loop	1	nd	0.44	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CUUCUGU---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------ACTTCTGTGTCATTAACA-----------------------------------------------------------------	18	1
rat	tacacctaataaacccttactacatggtaggttgACTTCTGTGTCATTAACAtccagaccctcccacaatgacagggttgtcatatatctgtgtacttcctagggatatgggtgtgt
	*********************************************************************************************************************
rat	((((((((.....((((...(((((((.....((((..((.(((((((...................))))))).))..)))).....)))))))......))))...)))))))).	0.950 -33.61