miR-Intess: classification

other hairpins

novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (1184 loci)

block913077 [novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	41	-4	5arm_loop	1	nd	0.37	5	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------GUGUAGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	-----------------------------------------GGTGTAGTTTTGTTCCCAT----------------------------------------------------------	19	1
rat	cccatgtgaactgctcaggagatcagagagtgagtgaggcaGGTGTAGTTTTGTTCCCATagaacaaggtatgtgtgagagagctcagacttggatggcttgtatagtgtcacctggg
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000025847 ENSRNOG00000018985 Adrbk1
rat	((((.((((((((..((((..(((.(((..(((((....((..((((.((((((((.....))))))))))))..)).....)))))..))).)))..))))..)))).)))).))))	1.000 -39.00

rat

chromosome:1:206891820:206891937:-1

novel_lenNOK_loopOverlap_bulgeHIGH (1091 loci)

block936 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.61/0.61	18/18/0.00	0.0	0.0	2	0	2	0	28	-1	3arm	1	nd	0.28	4	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------GGGAUGC--------------------------------------	2	novel
		len	cloning frequencies
			T4S1	T4S2
	----------------------------------------------------TGGGATGCGGGAAAGGTG----------------------------	18	1	1
rat	gcccttggctcctgtgccctcaatcatcccaacactccagcatccctcctccTGGGATGCGGGAAAGGTGgtccttctcaaaagcagcctccaattgc
	**************************************************************************************************
rat	((..((((...((((.............(((....(((.(((((((.......))))))).)))....)))............))))...))))..))	0.620 -28.81

rat

chromosome:10:1717834:1717931:-1

intergenic

block2750 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.483	no	no	0.61/0.61	18/18/0.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	11 14	-3 -6	5arm_loop 5arm_loop	1 1	nd nd	0.28 0.44	4 7	2	2	na	na

		reads	miRBase family seed
seed	------------UGGGCUC---------------------------------------------	1	novel
seed	---------------GCUCCGU------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2
	--------------GGCTCCGTGTCTTCCATC--------------------------------	18	-	1
	-----------TTGGGCTCCGTGTCTTCC-----------------------------------	18	1	-
rat	tgcactgtttcTTGGGCTCCGTGTCTTCCATCtagagacggcggcgaatccacatctccctgcg
	****************************************************************
	--------------------------------------------------------------------------	ENSRNOT00000044626 ENSRNOG00000033942 Grin2a
rat	.(((........((((((((((.(((.......))).)))).)))....)))........))).	0.920 -15.49

rat

chromosome:10:5735840:5735903:-1

block4260 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	18	-2	3arm_loop	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------CCUCCAG----------------------------	1	novel
		len	cloning frequencies
			T4S2
	----------------------------TCCTCCAGATAAGACTCA------------------	18	1
rat	agcttgatttcagctgttatttggggatTCCTCCAGATAAGACTCAgcaatttcctgtcaatct
	****************************************************************
rat	((.(((((....((((((((((((((....))))))))))....))))........))))).))	0.950 -16.20

rat

chromosome:10:9569635:9569698:-1

intergenic

block7833 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.044	no	no	0.43/0.44	18/21/0.50	0.0	1.5	2	0	1	0	11	-6	5arm_loop	2	nd	0.28	4	2	1	na	na

		reads	miRBase family seed
seed	------------CCUAAGC--------------------------------------------------	2	novel
		len	cloning frequencies
			T3S1
	-----------TCCTAAGCCCAGTAAAAGGTT-------------------------------------	21	1
	-----------TCCTAAGCCCAGTAAAAG----------------------------------------	18	1
rat	ccaggtgtgggTCCTAAGCCCAGTAAAAGGTTcgttgcagtgggctgccaggacagcagctactctgga
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000027940 ENSRNOG00000020571 Mpg
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000027913 ENSRNOG00000020571 Mpg
rat	(((((.(((((((((.((((((((((........))))..))))))...))))).....))))))))).	1.000 -26.70

rat

chromosome:10:15647070:15647138:-1

Same_strand|Intronic_coding|ENSRNOT00000027913|ENSRNOG00000020571 ## ENSRNOG00000020571|protein_coding|Mpg|DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase) (ADPG) (3-alkyladenine DNA glycosylase) (N-methylpurine- DNA glycosylase) (Fragment). [Source:UniProtKB/Swiss-Prot;Acc:P23571]

block8923 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	6	-3	5arm_loop	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------CAUUGGG-------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	------GCATTGGGTTTTCCCAAAC--------------------------------------------	19	1
rat	ggccagGCATTGGGTTTTCCCAAACcacactgtaagaaccactgggaagaccaccatgatgcagaggtt
	*********************************************************************
	-------------------------------------------------------------------------------	ENSRNOT00000005874 ENSRNOG00000004395 Fbxw11
	-------------------------------------------------------------------------------	ENSRNOT00000006078 ENSRNOG00000004395 Fbxw11
rat	.(((..(((((.((((((((((....................)))))))))).....)))))...))).	0.990 -21.55

rat

chromosome:10:17582208:17582276:-1

block9552 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.183	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	8	-1	3arm	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UUGCCUU------------------	1	novel
		len	cloning frequencies
			T3S1
	-----------------------------TTTGCCTTCTTTGCCCCA--------	18	1
rat	gatttcattctccaaagcagagcaaatgaTTTGCCTTCTTTGCCCCAgtgtactc
	*******************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000009524 ENSRNOG00000006932 Q3MIE5_RAT
rat	.....((((...(((((.((.((((.....)))))).)))))....)))).....	0.950 -9.00

rat

chromosome:10:19298384:19298438:-1

block10434 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.381	no	no	0.44/0.44	18/18/0.00	0.0	0.0	4	0	4	0	6	-1	3arm	1	nd	0.28	4	4	4	na	na

		reads	miRBase family seed
seed	----------------------------------GGAUGAA----------------	4	novel
		len	cloning frequencies
			T1S1	T2S2	T4S2	T5S1
	---------------------------------TGGATGAATCCCAAAAGC------	18	1	1	1	1
rat	ggtgccagtgtaggtgaattctcctcttggattTGGATGAATCCCAAAAGCttgcca
	*********************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000011922 ENSRNOG00000027341 Odz2
rat	(((...(((...((.((.((((((..........))).)))))))....))).))).	0.460 -11.00

rat

chromosome:10:21517560:21517616:-1

block14233 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.206	no	no	0.33/0.33	18/18/0.00	0.0	0.0	2	0	2	0	16	-1	3arm	1	nd	0.28	4	2	2	na	na

		reads	miRBase family seed
seed	----------------------------------------GGAGGUU--------------------------	2	novel
		len	cloning frequencies
			T1S1	T2S1
	---------------------------------------TGGAGGTTTTGTTTTTCA----------------	18	1	1
rat	cagtttattagtgaagaattccttcctctccaccctcacTGGAGGTTTTGTTTTTCAgcccctgtcatattgg
	*************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003224 ENSRNOG00000002372 Sgcd
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000042561 ENSRNOG00000002372 Sgcd
rat	((((....(((((((((((.....(((((...........)))))....))))))))....)))....)))).	0.940 -12.80

rat

chromosome:10:32370520:32370592:-1

block15617 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.362	no	no	0.11/0.11	19/19/0.00	0.0	0.0	1	0	1	0	15	-2	3arm_loop	2	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UUUUAAA--------------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------------------------------TTTTTAAAAGCTTTTTTTT---------------	19	1
rat	ctggggacagctctgcagagagaatgattttggacatgattTTTTTAAAAGCTTTTTTTTttatggagtcttgag
	***************************************************************************
rat	((.(((...(((((..((((((((...(((((((.........)))))))....))))))))..)))))))).))	0.420 -12.90