miR-Intess: classification

other hairpins

novel_lenNOK_loopOverlap_bulgeHIGH (1091 loci)

block1750074 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.521	no	no	0.79/0.79	19/19/0.00	0.0	0.0	1	0	1	0	12	-3	5arm_loop	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	-------------CCCACCG------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	------------GCCCACCGGCAGCTGCTCC-------------------------------	19	1
rat	ggcaggaagtgcGCCCACCGGCAGCTGCTCCcggcagcggcgtgagttagggtcttcgagcc
	**************************************************************
rat	(((..((((...((((((((((.(((((.....))))).)).)).))..))))))))..)))	0.610 -24.80

rat

chromosome:5:77923866:77923927:-1

intergenic

block1762801 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.087	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	31	-3	5arm_loop	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------CUGACUG-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------------------------------CCTGACTGGGACTGAGTGA--------------------------------------------------------------	19	1
rat	ggtcggctgtgtcaagatgaaggtaggcgtcCCTGACTGGGACTGAGTGAagcagttcgagtcccagaacgcgggactgcctcagccccaggctttcacaaaacccggacta
	****************************************************************************************************************
rat	((((((.((((..(((.((..((((((((((((((.(((((((((((........))).))))))))..)).))))).))))..))).))..))).))))....))).))).	0.950 -41.80

rat

chromosome:5:106168362:106168473:-1

intergenic

novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH (1047 loci)

block177 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.113	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	34	7	5arm	17	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------UGUGUAU---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	----------------------------------TTGTGTATCATCCCAGGG-----------------------------------------------------------------	18	1
rat	gatgagccagcatgacctatgagcctatgggaagTTGTGTATCATCCCAGGGgaagcagtagctgttgtcccaggagggctcacttcccttctcttttagatctttgactccaatca
	*********************************************************************************************************************
rat	((((((.(((...((.(((.(((.....((((((.((.((....(((...(((((((((...))))).)))).)))..)).))))))))....))).))).)).))).)))..))).	1.000 -35.10

rat

chromosome:10:373249:373365:-1

intergenic

block27602 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.426	no	no	0.68/0.68	19/19/0.00	0.0	0.0	1	0	1	0	19	15	5arm	18	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------CUCCGGG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-------------------GCTCCGGGGCAGACATGAC-------------------------------------------------------------------	19	1
rat	ctgcagcagagataatcgaGCTCCGGGGCAGACATGACgcctgagtgggagccggttcgaggcttcgcaccacacgtggttaagccccctgcttgcgtgcggcgg
	*********************************************************************************************************
rat	((((.(((........(((((...(((((....((.(((..((.(((((((((.......)))))).)))))..))).))...)))))..)))))..))).))))	0.630 -40.40

rat

chromosome:10:61565924:61566028:-1

intergenic

block33075 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.050	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	9	12	3arm	46	nd	0.42	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CCUUGGC--------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------------------------------------------CCCTTGGCCATGTAGCTTC---------	19	1
rat	tgtggcctctgccttggtttggaccttgggctttgattggcagagcctacgaCCCTTGGCCATGTAGCTTCaaatccact
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000003699 ENSRNOG00000002757 Tada2l
rat	.((((...((((..(((((.((....(((((((((.....)))))))))....))..))))).))))........)))).	0.870 -25.50

rat

chromosome:10:72404300:72404379:-1

block71537 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.426	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	16	2	5arm	13	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------CCAUAAA------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------------TCCATAAATTCCACTCGC--------------------------------------------	18	1
rat	agagtggctggtgtcaTCCATAAATTCCACTCGCatctgcgtgcactgtccctgaaaactggtcctgcccagcacttt
	******************************************************************************
rat	(((((.(((((.((...(((....(((.((..((((....))))...))....)))...)))....))))))))))))	0.550 -16.80

rat

chromosome:10:40833892:40833969:1

intergenic

block73210 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.072	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	7	26	5arm	129	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	--------GCACAGU------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	-------GGCACAGTCAAGGCTGAGA-------------------------------------------------------------------------------------------	19	1
rat	attcaaaGGCACAGTCAAGGCTGAGAacgggaagctcgtcatcaacaggaagcccatcaccatcttccaagagcgagatcccactaacagcaaatgggatgatgctggtgttgagta
	*********************************************************************************************************************
rat	((((((.((((..(((...((((.....((((..(((((..((....(((((...........)))))..))))))).)))).....))))......)))..))))....)))))).	0.920 -32.60

rat

chromosome:10:45103999:45104115:1

intergenic

block77911 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.523	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	5	7	5arm	11	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	------AACGCUU----------------------------------------------------------	1	novel
		len	cloning frequencies
			T4S1
	-----AAACGCTTCTCGGGCACC------------------------------------------------	18	1
rat	aggacAAACGCTTCTCGGGCACCgtcaggcttatgtccacccctcgccccaagttctccgtgtgcgtcctg
	***********************************************************************
rat	(((((..((((..((.((((.......(((....)))........))))..))......))))..))))).	0.750 -17.46

rat

chromosome:10:55832888:55832958:1

intergenic

block78004 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.302	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	24	1	5arm	38	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------UUCUGUG----------------------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	------------------------ATTCTGTGTCCAATGGCC------------------------------------------	18	1
rat	tgggatgggtacagcatcacacggATTCTGTGTCCAATGGCCtttgcaggaaggtggcttcggaatttggcacaaaccatgcca
	************************************************************************************
rat	.((.((((.....((......(((((((((...(((....(((....)))....)))...))))))))))).....)))).)).	0.530 -24.40

rat

chromosome:10:55909375:55909458:1

intergenic

block108303 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.108	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	6	1	3arm	38	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UUCUGUG----------------	1	novel
		len	cloning frequencies
			T2S2
	--------------------------ATTCTGTGTCCAATGGCC------	18	1
rat	tctgggatgggtacagcatcacatggATTCTGTGTCCAATGGCCttcgga
	**************************************************
	------------------------------------------------------------	ENSRNOT00000032550 ENSRNOG00000028740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000046370 ENSRNOG00000030840 Igsf4d_predicted
rat	((((((.(((..((((.(((.....))).))))..)))....))..))))	1.000 -15.20

rat

chromosome:11:4293994:4294043:-1

Opposite_strand|Intronic_coding|ENSRNOT00000032550|ENSRNOG00000028740 ## Same_strand|Intronic_coding|ENSRNOT00000046370|ENSRNOG00000030840 ## ENSRNOG00000030840|protein_coding|Igsf4d_predicted|immunoglobulin superfamily, member 4D [Source:RefSeq_peptide;Acc:NP_001040567] ## ENSRNOG00000028740|protein_coding||

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Page 31204

miR-Intess™

block1750074 [novel_lenNOK_loopOverlap_bulgeHIGH]

block1762801 [novel_lenNOK_loopOverlap_bulgeHIGH]

block177 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block27602 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block33075 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block71537 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block73210 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block77911 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block78004 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]

block108303 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]