other hairpins
novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH (1047 loci)
block1411754 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.578 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 28 | 3 | 3arm | 14 | nd | 0.37 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------GGCAAGC--------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -------------------------------------------------------AGGCAAGCTCCAAAGTTGC---------------------------- | 19 | 1 | 1 | |
| rat | atggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgctcAGGCAAGCTCCAAAGTTGCaacatggatgcactgacctatgatgatg | |||
| ****************************************************************************************************** | ||||
| rat | ((.(((.(((.....(((((((.(((..(((..(((((((.((((((.....)))))).))..)))))....)))))).))).))))....))).))).)). | 0.800 -27.60 | ||
| rat | chromosome:3:137531988:137532089:-1 | intergenic |
block1665769 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 13 | 5 | 5arm | 137 | nd | 0.37 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------AGGCUGU------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -------------AAGGCTGTGGGCAAGGTCA------------------------------------------- | 19 | 1 | 1 | |
| rat | cactgatgctgccAAGGCTGTGGGCAAGGTCAtctcagagctgaatgggaagcccacaggcatggccttctgtgt | |||
| *************************************************************************** | ||||
| rat | (((.((....((((...((((((((....((((.(((....)))))))...))))))))...))))..)).))). | 0.990 -27.00 | ||
| rat | chromosome:4:107297594:107297668:1 | intergenic |
block1728717 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 12 | 2 | 5arm | 137 | nd | 0.32 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------AGGCUGU------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ------------AAGGCTGTGGGCAAGGTCA------------------------------------------- | 19 | 1 | 1 | |
| rat | actggtactgccAAGGCTGTGGGCAAGGTCAtcccagagatgaacagaaagctcactggcatggccttccatgt | |||
| ************************************************************************** | ||||
| rat | ..(((....((((..(((((((((....(((((.....))))).......)))))).))).))))...)))... | 0.840 -24.10 | ||
| rat | chromosome:5:36971864:36971937:-1 | intergenic |
block1968410 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.501 | no | no | 0.58/0.61 | 18/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 10 | 10 6 | 5arm 5arm | 38 41 | nd nd | 0.38 0.67 | 4 8 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------CUUCCGU-------------------------------------------------------------- | 1 | novel |
| seed | -CUGGCAU------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ACTGGCATGGCCTTCCGTGTTCCT-------------------------------------------------------- | 24 | 1 | |
| ----------CCTTCCGTGTTCCTACCC---------------------------------------------------- | 18 | 1 | |
| rat | ACTGGCATGGCCTTCCGTGTTCCTACCCccaatgtatccattgtgaatctgacatgccgccttgagaaacctgccaagta | ||
| ******************************************************************************** | |||
| rat | (((((((.(((....((((((........(((((....))))).......))))))..)))..........))))).)). | 0.710 -15.56 |
| rat | chromosome:6:114071504:114071583:-1 | intergenic |
block2090554 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.315 | no | no | 0.37/0.61 | 19/26/0.62 | 0.0 0.0 0.2 | 0.0 0.0 2.0 | 1 1 6 | 0 0 0 | 1 1 1 | 0 0 0 | 9 17 22 | 17 13 1 | 5arm 5arm 5arm | 16 16 16 | nd nd nd | 0.39 0.37 0.42 | 4 4 4 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------CACUCAG------------------------------------------------------------------------ | 5 | novel | |
| seed | ------------------GGAGCAC------------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------------------ACACUCA------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------CCCCUGC-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------------------ACACTCAGTATCTAGATTGACCCC-------------------------------------------------------- | 24 | - | 2 | |
| -----------------------ACACTCAGTATCTAGATTGAC----------------------------------------------------------- | 21 | - | 2 | |
| -----------------TGGAGCACACTCAGTATCT------------------------------------------------------------------- | 19 | 1 | - | |
| -----------------------ACACTCAGTATCTAGATTG------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------CACACTCAGTATCTAGATTGACCCCC------------------------------------------------------- | 26 | - | 1 | |
| ---------TCCCCTGCTGGAGCACACTCAGT----------------------------------------------------------------------- | 23 | - | 1 | |
| rat | ttcaagaagTCCCCTGCTGGAGCACACTCAGTATCTAGATTGACCCCCtttgattttagtaggtcctagaagaggctaatgactgtagcatggtatagtgaag | |||
| ******************************************************************************************************* | ||||
| rat | ((((....((.((.(((((.((((..(((....(((((...((((..((........))..))))))))).))).....)).)).))))).)).))..)))). | 0.990 -24.80 | ||
| rat | chromosome:7:18782210:18782312:-1 | intergenic |
block2109635 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.590 | no | no | 0.74/0.74 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 20 | 3arm | 25 | nd | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------AGAGCCG-------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------------------GAGAGCCGGACGGGCACTG--------- | 19 | 1 | |
| rat | gagaggctggctcccgctctcacagccattgcagtacattgagctccatagagacagtgccggggcaagcGAGAGCCGGACGGGCACTGggcgactct | ||
| ************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048880 ENSRNOG00000006426 Syt1 | ||
| rat | (((..(((.((((((((((((...((..((((....(((((..(((....))).))))).....)))))))))))).))..))))....)))..))). | 0.540 -31.70 |
| rat | chromosome:7:47549981:47550078:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000048880|ENSRNOG00000006426 ## ENSRNOG00000006426|protein_coding|Syt1|Synaptotagmin-1 (Synaptotagmin I) (SytI) (p65). [Source:UniProtKB/Swiss-Prot;Acc:P21707] |
block2398441 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.524 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 5 | 33 | 5arm | 137 | nd | 0.37 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------AGGCUGU------------------------------------------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| -----AAGGCTGTGGGCAAGGTCA------------------------------------------------------------------------------------------- | 19 | 1 | 1 | |
| rat | ctgccAAGGCTGTGGGCAAGGTCAtcccagtgctgaaggggaagctcactggcacagtattctgtgttcctatcccccaatgtgtattttgtagatctgacatgctgcctggaga | |||
| ******************************************************************************************************************* | ||||
| rat | ((.((.((((.(((....(((((.....(((((....(((((........(((((((....)))))))....)))))......))))).....)))))....))).)))))))). | 0.880 -33.00 | ||
| rat | chromosome:8:44646304:44646418:1 | intergenic |
block2595875 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.144 | no | no | 0.79/0.79 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 18 | 2 | 5arm | 22 | nd | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------CGCCGGG-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------GCGCCGGGGCAAGCGAGAG--------------------------------------------- | 19 | 1 | |
| rat | ttgagctccatagagagaGCGCCGGGGCAAGCGAGAGccggacgggcactgggcgactctgtgcctcactgaggaaaatcaa | ||
| ********************************************************************************** | |||
| rat | .(((..(((.(((.(((.((((.(((....((.((.(((.....))).))..))..))).))))))).))).)))...))). | 0.900 -28.20 |
| rat | chromosome:9:46247690:46247771:1 | intergenic |
block1329352 [novel_lenNOK_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.711 | no | no | 0.72/0.74 | 18/19/0.00 | 0.5 | 1.0 | 2 | 0 | 2 | 0 | 18 | 1 | 5arm | 24 | nd | 0.37 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------GAGACAG---------------------------------------------------- | 1 | novel | |
| seed | --------------------AGACAGC--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------AGAGACAGCGCCGGGGCA------------------------------------------ | 18 | - | 1 | |
| -------------------GAGACAGCGCCGGGGCAAG---------------------------------------- | 19 | 1 | - | |
| rat | cagtacattgagctccatAGAGACAGCGCCGGGGCAAGtgagagccggacgggcactgggcgactctgtgcctcgctg | |||
| ****************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000015354 ENSRNOG00000011528 RGD1312003 | |||
| rat | .....((.((((...(((((((....((((.((((..((.........))..)).)).)))).))))))).)))).)) | 0.920 -25.30 | ||
| rat | chromosome:2:217964200:217964277:1 | Same_strand|Intronic_coding|ENSRNOT00000015354|ENSRNOG00000011528 ## ENSRNOG00000011528|protein_coding|RGD1312003|UDP-N-acetylglucosamine transferase subunit ALG14 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q6AY85] |
novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH (845 loci)
block7151 [novel_lenNOK_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.72/0.72 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 14 | -1 | 5arm_loop | 2 | nd | 0.33 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------GGAGUGG---------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| --------------TGGAGTGGGGGGTGGGGT------------------------------------------ | 18 | 1 | 1 | |
| rat | gctgcgggactgtaTGGAGTGGGGGGTGGGGTcctctcttatgtccctcttcttcccatgttgcagttgcagtg | |||
| ************************************************************************** | ||||
| rat | (((((..(((((((....((((((((.((((.............))))...))))))))..)))))))))))). | 1.000 -30.52 | ||
| rat | chromosome:10:14719330:14719403:-1 | intergenic |
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