miR-Intess: classification

other hairpins

block1093516 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.369	no	no	0.42/0.57	19/24/0.40	0.0	0.0	5	0	2	0	29	6	3arm	1	nd	0.21	2	10	2	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------CUCAAUG----------------------------------------	7	novel
seed	-----------------------------------------------------------------------------AGUUGGG---------------------------------	1	novel
seed	--------------------------------------------------------------------AUCUCAA------------------------------------------	1	novel
seed	------------------------------------------------------------------------CAAUGAG--------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	---------------------------------------------------------------------TCTCAATGAGTTGGGGTTC-----------------------------	19	-	5
	---------------------------------------------------------------------TCTCAATGAGTTGGGGTTCGAGGC------------------------	24	-	1
	-----------------------------------------------------------------------TCAATGAGTTGGGGTTCGAGGC------------------------	22	1	-
	---------------------------------------------------------------------TCTCAATGAGTTGGGGTTCG----------------------------	20	-	1
	----------------------------------------------------------------------------GAGTTGGGGTTCGAGGCTTAG--------------------	21	1	-
	-------------------------------------------------------------------TATCTCAATGAGTTGGGGT-------------------------------	19	-	1
rat	ccaaacaggaacttccttctaggtgatccctctcttttttccaaaattgacggcagggacctgtccctaTCTCAATGAGTTGGGGTTCgaggcttagtggttggtggtaatcagtgg
	*********************************************************************************************************************
rat	(((.......(((..((.((((((((((((.(((...........(((((.((.(((((....))))).))))))))))..))))))....)))))).))..))).........)))	0.680 -31.69

rat

chromosome:20:5538961:5539077:1

intergenic

block1469308 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.40/0.42	19/20/0.10	0.3 0.0	0.3 0.0	6 1	0 0	2 1	0 0	20 31	18 8	5arm 5arm	1 1	nd nd	0.32 0.26	3 3	10	2	na	na

		reads	miRBase family seed
seed	---------------------UCAGAAU------------------------------------------------------------------------------------------	4	novel
seed	----------------------CAGAAUU-----------------------------------------------------------------------------------------	3	novel
seed	--------------------------AUUCCCA-------------------------------------------------------------------------------------	1	novel
seed	--------------------------------AGUGUCA-------------------------------------------------------------------------------	1	novel
seed	-----------------------AGAAUUC----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	--------------------TTCAGAATTCCCAGTGTCA-------------------------------------------------------------------------------	19	-	4
	---------------------TCAGAATTCCCAGTGTCAT------------------------------------------------------------------------------	19	1	2
	-------------------------------CAGTGTCATTTCCATATCC--------------------------------------------------------------------	19	-	1
	-------------------------AATTCCCAGTGTCATTTCCA-------------------------------------------------------------------------	20	-	1
	----------------------CAGAATTCCCAGTGTCATT-----------------------------------------------------------------------------	19	-	1
rat	catggccaccatcagggcccTTCAGAATTCCCAGTGTCATttccatatcctgggctctcccaagaactcctggggtgggggagtggggggtgggggtggggggagggatggagtcatg
	**********************************************************************************************************************
rat	((((((..(((((....(((..((...((((((...((((((((.(((((..((.(((....)))...))..))))).))))))))....))))))))..)))...))))).))))))	0.710 -51.80

rat

chromosome:3:76936118:76936235:1

intergenic

block1469397 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.153	no	no	0.37/0.43	19/25/0.36	0.0	1.8	9	0	3	0	9	6	3arm	1	nd	0.11	1	11	3	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AAGGACC--------------------------	9	novel
seed	----------------------------------------------------------AGGACCU-------------------------	1	novel
seed	-----------------------------------------------------------------GAUUAUA------------------	1	novel
		len	cloning frequencies
			T2S1	T2S2	T5S1
	--------------------------------------------------------TAAGGACCTGATTATAGACAGACAC---------	25	-	-	5
	--------------------------------------------------------TAAGGACCTGATTATAGAC---------------	19	-	-	2
	--------------------------------------------------------TAAGGACCTGATTATAGACAGAC-----------	23	-	2	-
	----------------------------------------------------------------TGATTATAGACAGACACTGGG-----	21	1	-	-
	---------------------------------------------------------AAGGACCTGATTATAGACAGACAC---------	24	-	-	1
rat	gcgtctgtttgatgtctgtgagctgggaagccttacttagccatgggggttggcccTAAGGACCTGATTATAGACAGACACtggggtgca
	******************************************************************************************
rat	((..((...((.(((((((((..((((...(((((....((((.......))))..))))).)))).)))))))))..))...))..)).	0.900 -29.30

rat

chromosome:3:76939583:76939672:1

intergenic

block1469639 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.402	no	no	0.45/0.50	18/21/0.50	0.6	0.5	13	0	2	0	9	3	3arm	1	nd	0.26	2	18	2	na	na

		reads	miRBase family seed
seed	-------------------------------------------GGACAAU----------------------	11	novel
seed	---------------------------------------------ACAAUCU--------------------	4	novel
seed	----------------------------------------------CAAUCUU-------------------	1	novel
seed	--------------------------------------------------CUUUCGA---------------	1	novel
seed	------------------------------------------------AUCUUUC-----------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	------------------------------------------TGGACAATCTTTCGACCTCTG---------	21	-	6
	------------------------------------------TGGACAATCTTTCGACCTC-----------	19	1	3
	--------------------------------------------GACAATCTTTCGACCTCTG---------	19	2	2
	-------------------------------------------------TCTTTCGACCTCTGGTAG-----	18	-	1
	-----------------------------------------------AATCTTTCGACCTCTGGTAG-----	20	-	1
	---------------------------------------------ACAATCTTTCGACCTCTGGT-------	20	-	1
	------------------------------------------TGGACAATCTTTCGACCTCT----------	20	1	-
rat	aggcagtggaagaatcttgaatagagtgaaacatgcacggcaTGGACAATCTTTCGACCTCTGgtagctacc
	************************************************************************
rat	.((.(((...(((...(((((.(((.((...(((((...)))))..)).))))))))..)))....))).))	0.830 -15.70

rat

chromosome:3:76948111:76948182:1

intergenic

block1499851 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.157	no	no	0.30/0.33	19/21/0.20	0.0	0.0	8	0	2	0	15	7	3arm	1	nd	0.16	2	10	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------ACUAAGA--------------------------	9	novel
seed	---------------------------------------------------------GUACUAA----------------------------	1	novel
		len	cloning frequencies
			T1S1	T5S1
	----------------------------------------------------------TACTAAGAAGTCATGTTGT---------------	19	-	8
	--------------------------------------------------------TGTACTAAGAAGTCATGTTGT---------------	21	-	1
	----------------------------------------------------------TACTAAGAAGTCATGTTGTT--------------	20	1	-
rat	ttcttgtacagtgggatcctgacccatggcttccttgctgcagaatgcaggtgatctgTACTAAGAAGTCATGTTGTtccttgaaccagagt
	********************************************************************************************
rat	((((.((.(((.(((((.......((((((((.((((.((((((.((....)).)))))).))))))))))))..)))))))).)).)))).	0.980 -25.30

rat

chromosome:3:141756893:141756984:1

intergenic

block1766979 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.372	no	no	0.47/0.58	18/23/0.62	0.8 0.0	0.0 0.0	5 12	0 0	3 1	0 0	10 0	20 31	3arm 3arm	1 1	nd nd	0.26 0.38	3 3	21	3	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------AAGGAUG--------------	15	novel
seed	----------------------------------------------------------------------------------------GGGACUU---------------------	4	novel
seed	------------------------------------------------------------------------------------GCCUGGG-------------------------	1	novel
seed	--------------------------------------------------------------------------------------------------GAUGACU-----------	1	novel
		len	cloning frequencies
			T1S1	T5S1	T5S2
	----------------------------------------------------------------------------------------------TAAGGATGACTCGCTCTGAGAG	22	-	12	-
	---------------------------------------------------------------------------------------TGGGACTTAAGGATGACTC----------	19	2	2	-
	----------------------------------------------------------------------------------------------TAAGGATGACTCGCTCTG----	18	-	3	-
	-----------------------------------------------------------------------------------TGCCTGGGACTTAAGGATGACTC----------	23	-	-	1
	-------------------------------------------------------------------------------------------------GGATGACTCGCTCTGAGAG	19	-	1	-
rat	tctacagcctcttgtcactagaatcctcttcttttgctttcaacactggcatcttcatctgtctgccccagtgagagagctgttgcctgggactTAAGGATGACTCGCTCTGAGAG
	********************************************************************************************************************
rat	(((..(((...(((((.((.((.((((........((((((..((((((((............))))..)))).))))))........)))).)).)))))))...)))...))).	0.960 -26.89

rat

chromosome:5:114554810:114554925:-1

intergenic

block1767023 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.110	no	no	0.41/0.47	19/22/0.21	0.5	1.4	11	0	3	0	6	8	3arm	1	nd	0.21	2	14	3	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------GUGACAU----------------------	11	novel
seed	-------------------------------------------------------------GACAUUU--------------------	3	novel
		len	cloning frequencies
			T1S1	T5S1	T5S2
	----------------------------------------------------------TGTGACATTTCCCTTGGGT-----------	19	2	8	1
	------------------------------------------------------------TGACATTTCCCTTGGGTATTCT------	22	-	3	-
rat	gggtgaggaaccacatacggtataaatcttcatttttcatcattattatttgaagcccTGTGACATTTCCCTTGGGTATTCTacaccc
	****************************************************************************************
rat	((((((((((((.((...((...((((..((((......(((........)))......)))).))))))..))))).)))).)))))	0.600 -17.60

rat

chromosome:5:114556055:114556142:-1

intergenic

novel_lenNOK_Multihit_nonpairedHIGH (807 loci)

block1989 [novel_lenNOK_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.136	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	16	4	5arm	113	nd	0.37	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------UUCCCUU--------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------TTTCCCTTGATGATGCAGT---------------------------------------------	19	1
rat	ggcgcccagcctggccTTTCCCTTGATGATGCAGTagggcactcccatccttcgacacaaggaaggcaggaaaaccacca
	********************************************************************************
	------------------------------------------------------------------------------------------	ENSRNOT00000044593 ENSRNOG00000032439 LOC302898
rat	((.......(((.(((((..(((((.((.((.((..(((....)))...)).)).))))))))))))))).......)).	0.610 -22.74

rat

chromosome:10:4325978:4326057:-1

block16647 [novel_lenNOK_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.109	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	12	4	5arm	12	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-------------AGCUGGU---------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	------------GAGCTGGTGATGATGAGGA----------------------------------------------------	19	1
rat	agggtggtgctgGAGCTGGTGATGATGAGGAagaggattaattcataccttgttgcactggaggattgtctagttttccagtt
	***********************************************************************************
rat	.((.(((.((((((.((((((.(((..(((..(((......)))...)))..))))))))).......))))))...))).))	0.800 -21.30

rat

chromosome:10:37869220:37869302:-1

intergenic

block17933 [novel_lenNOK_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.956	no	no	0.50/0.50	18/18/0.00	0.0	0.0	2	0	1	0	12	20	3arm	16	nd	0.33	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CAGGAUC----------------------	2	novel
		len	cloning frequencies
			T2S2
	----------------------------------------------------------------------TCAGGATCATGCCATTCC------------	18	2
rat	cggatcttgcgggccggctggttgaaccacgtgtccactcgctgctgccagtccttgtgaaagtggggctTCAGGATCATGCCATTCCggctgggcgcca
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000014464 ENSRNOG00000010668 Anxa6
rat	.((....(((.((((((.(((((((.((....((((((((((.((.....))....))))..)))).))....)).))).))))..))))))..))))).	0.520 -30.40

rat

chromosome:10:40386096:40386195:-1

Same_strand|Intronic_coding|ENSRNOT00000014464|ENSRNOG00000010668 ## ENSRNOG00000010668|protein_coding|Anxa6|Annexin A6 (Annexin-6) (Annexin VI) (Lipocortin VI) (P68) (P70) (Protein III) (Chromobindin-20) (67 kDa calelectrin) (Calphobindin-II) (CPB-II) (Calcium-binding protein CATA 65/67). [Source:UniProtKB/Swiss-Prot;Acc:P48037]

Page 27669

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Page 31204

miR-Intess™

block1093516 [novel_lenNOK_cloningOK]

block1469308 [novel_lenNOK_cloningOK]

block1469397 [novel_lenNOK_cloningOK]

block1469639 [novel_lenNOK_cloningOK]

block1499851 [novel_lenNOK_cloningOK]

block1766979 [novel_lenNOK_cloningOK]

block1767023 [novel_lenNOK_cloningOK]

block1989 [novel_lenNOK_Multihit_nonpairedHIGH]

block16647 [novel_lenNOK_Multihit_nonpairedHIGH]

block17933 [novel_lenNOK_Multihit_nonpairedHIGH]