other hairpins
novel_lenNOK_multiarm_DicerNOK (767 loci)
sblock12198 [novel_lenNOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.361 | no | no | 0.53/0.61 | 18/22/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 7 16 0 | 18 8 17 | 5arm 5arm 3arm | 1 2 2 | nd nd nd | 0.44 0.53 0.19 | 5 9 1 | 3 | 3 | 3 | 14 |
| reads | miRBase family seed | ||||
| seed | -----------------GCACCCU--------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------GUGUGGA-------------- | 1 | novel | ||
| seed | --------CACGGUA------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T4S2 | |||
| -----------------------------------------------------------------AGTGTGGAGTAGTGCGCCTTCT | 22 | - | - | 1 | |
| -------GCACGGTACTGCACCCTT-------------------------------------------------------------- | 18 | - | 1 | - | |
| ----------------TGCACCCTTAAATCCTGCC---------------------------------------------------- | 19 | 1 | - | - | |
| rat | tgggagtGCACGGTACTGCACCCTTAAATCCTGCCgcctgtgtcccaaacatggtgtctgcgtgcAGTGTGGAGTAGTGCGCCTTCT | ||||
| *************************************************************************************** | |||||
| rat | .(((((.((.((.((((.(((.........(((((((((((((.....)))))).....))).)))).))).)))).)).))))))) | 0.910 -28.20 | |||
| rat | chromosome:9:36364369:36364455:-1 | intergenic ## {Repeats: trf 24 24 0 class=trf,dust 36364369 36364369 0 class=dust} |
sblock1959 [novel_lenNOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.079 | no | no | 0.47/0.67 | 18/19/0.00 | 0.0 1.0 | 0.2 1.0 | 4 2 | 0 0 | 4 2 | 0 0 | 19 19 | 9 12 | 5arm 3arm | 2 2 | nd nd | 0.16 0.17 | 2 1 | 6 | 5 | -3 | -2 |
| reads | miRBase family seed | ||||||
| seed | --------------------GGCUGUU--------------------------------------------------------------------------- | 4 | novel | ||||
| seed | ----------------------------------------------------------------CCGGCAG------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------GGCAGUC----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| -------------------AGGCTGTTACACAACTGC----------------------------------------------------------------- | 18 | 1 | - | - | 1 | 1 | |
| -------------------AGGCTGTTACACAACTGCT---------------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| -----------------------------------------------------------------CGGCAGTCTGTCAGCAGC------------------- | 18 | - | 1 | - | - | - | |
| ---------------------------------------------------------------CCCGGCAGTCTGTCAGCA--------------------- | 18 | - | - | - | 1 | - | |
| rat | agctgggaaatgcgaacttAGGCTGTTACACAACTGCTggggtctgttctcgcagcccgcccgCCCGGCAGTCTGTCAGCAGCgtcgccgcctcctcagctg | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((((((((...((((......(((((((((..(((((((((((((((....))))...))))...))))))).))).)))))).))))....))).))))). | 1.000 -41.10 | |||||
| rat | chromosome:1:128843965:128844066:1 | intergenic |
sblock8283 [novel_lenNOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.637 | no | no | 0.47/0.89 | 18/20/0.12 | 0.0 1.0 0.0 | 0.2 1.0 1.0 | 4 2 2 | 0 0 0 | 4 2 2 | 0 0 0 | 28 26 0 | 3 0 26 | 5arm 3arm 3arm | 2 2 2 | nd nd nd | 0.16 0.11 0.28 | 2 1 3 | 8 | 6 | -3 | -2 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------GGCUGUU---------------------------------------------------------------------------------- | 4 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------------CCGCCGU------------ | 2 | novel | |||||
| seed | -------------------------------------------------------------------------CCGGCAG-------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------GGCAGUC------------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ----------------------------AGGCTGTTACACAACTGC------------------------------------------------------------------------ | 18 | - | 1 | - | - | 1 | 1 | |
| --------------------------------------------------------------------------CGGCAGTCTGTCAGCAGC-------------------------- | 18 | - | - | 1 | - | - | - | |
| --------------------------------------------------------------------------------------------------GCCGCCGTCGCCGCCTCC-- | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------------------------------------CCCGGCAGTCTGTCAGCA---------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------------------------------------GCCGCCGTCGCCGCCTCCTC | 20 | 1 | - | - | - | - | - | |
| ----------------------------AGGCTGTTACACAACTGCT----------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | |
| rat | caggcgcagtgaggggaaatgcgaacttAGGCTGTTACACAACTGCTggggtctgttctcgccgcccgcccgCCCGGCAGTCTGTCAGCAGCgtcgccGCCGCCGTCGCCGCCTCCTC | |||||||
| ********************************************************************************************************************** | ||||||||
| rat | .(((((..((((((((....((((......(((((((((..(((((((((......................))))))))).))).)))))).))))..)).)).))))))))).... | 0.990 -43.75 | ||||||
| rat | chromosome:3:151428664:151428781:1 | intergenic ## {Repeats: dust 151428720 151428735 0 class=dust,dust 151428741 151428761 0 class=dust} ## {SimpF: oe = 0.93 1 CpG} |
novel_lenNOK_randfoldOK_bulgeHIGH (748 loci)
block6541 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.83/0.83 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | 6 | 5arm | 1 | nd | 0.28 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------GGGAGGG------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------------------------TGGGAGGGGGGTCGGGGG-------------------------------------------------- | 18 | 1 | |
| rat | gcgggggcactcaggtctcaagccTGGGAGGGGGGTCGGGGGatggggtggccccagtttctatcccctctgggcttgttcatgctccagca | ||
| ******************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016221 ENSRNOG00000011375 Tsc2_v2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000052138 ENSRNOG00000011375 Tsc2_v2 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000030886 ENSRNOG00000011375 Tsc2_v2 | ||
| rat | ((.((((((....((...(((((((.((((((((....((((((((((...))))).))))).))))))))))))))).)).)))))).)). | 0.980 -46.90 |
| rat | chromosome:10:13870260:13870351:-1 | Same_strand|Intronic_coding|ENSRNOT00000030886|ENSRNOG00000011375 ## ENSRNOG00000011375|protein_coding|Tsc2_v2|Tuberin (Tuberous sclerosis 2 homolog protein). [Source:UniProtKB/Swiss-Prot;Acc:P49816] |
block10014 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.61/0.61 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 16 | 5arm | 1 | nd | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------GGGGGGU--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| -------------------TGGGGGGTGCTTTTAGGG----------------------------------------------------------------------------- | 18 | 1 | |
| rat | cagctgtcttctctgggggTGGGGGGTGCTTTTAGGGgaaagtaaaatgcagaattattatctgtcagctccagtccatgtcacctgccacccctcaccccctcccctttctgg | ||
| ****************************************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000009714 ENSRNOG00000007377 Slit3 | ||
| rat | (((...........((((((((((((((....(((((((.........(((((.......))))).........)))......)))).))))))))))))))........))). | 0.610 -40.58 |
| rat | chromosome:10:20485253:20485366:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000009714|ENSRNOG00000007377 ## ENSRNOG00000007377|protein_coding|Slit3|Slit homolog 3 protein precursor (Slit-3) (Multiple epidermal growth factor-like domains 5). [Source:UniProtKB/Swiss-Prot;Acc:O88280] |
block10257 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 12 | 31 | 5arm | 1 | nd | 0.22 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------UUUCAUA------------------------------------------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S2 | |||
| ------------TTTTCATATCCCCCCCCC-------------------------------------------------------------------------------------- | 18 | 1 | 1 | |
| rat | ctgacactctccTTTTCATATCCCCCCCCCattctgctaccatcttaacctccccaccatgagctaccacttccgggaggcattctgggggggagggccaagattcagtagtcagc | |||
| ******************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000011922 ENSRNOG00000027341 Odz2 | |||
| rat | ((((((((....((((....(((((((((((...(((............(((((.....((......)).....))))))))...)))))))).)))..))))...))).))))). | 0.550 -35.40 | ||
| rat | chromosome:10:21004359:21004474:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000045307|ENSRNOG00000027341 ## Same_strand|Intronic_coding|ENSRNOT00000011922|ENSRNOG00000027341 ## ENSRNOG00000027341|protein_coding|Odz2|Teneurin-2 (Ten-2) (Tenascin-M2) (Ten-m2) (Protein Odd Oz/ten-m homolog 2) (Neurestin). [Source:UniProtKB/Swiss-Prot;Acc:Q9R1K2] ## {Repeats: dust 21004445 21004453 0 class=dust} |
block11217 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.11/0.11 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 22 | 5arm | 3 | nd | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------AAUUUGU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------TAATTTGTCAAAATTATTT----------------------------------------------------------------------------- | 19 | 1 | |
| rat | gcttttTAATTTGTCAAAATTATTTtctctttaagaatagcaagtaaactcatagttatttctgcttcttacaaggggaaataaaggactctggttatgagc | ||
| ****************************************************************************************************** | |||
| rat | ((((..(((((.(((....(((((((((((((((((((((.((((((........))))))))).)))))).))))))))))))..)))...))))).)))) | 1.000 -26.50 |
| rat | chromosome:10:24065727:24065828:-1 | intergenic |
block11218 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.11/0.11 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 22 | 5arm | 3 | nd | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------AAUUUGU---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------TAATTTGTCAAAATTATTT----------------------------------------------------------------------------- | 19 | 1 | |
| rat | gcttttTAATTTGTCAAAATTATTTtctctttaagaatagcaagtaaactcatagttatttctgcttcttacaaggggaaataaaggactctggttatgagc | ||
| ****************************************************************************************************** | |||
| rat | ((((..(((((.(((....(((((((((((((((((((((.((((((........))))))))).)))))).))))))))))))..)))...))))).)))) | 1.000 -26.50 |
| rat | chromosome:10:24066638:24066739:-1 | intergenic |
block14222 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 5 | 8 | 5arm | 1 | nd | 0.28 | 5 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------AAGAGGU-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -----TAAGAGGTTCTGACTACA---------------------------------------------- | 18 | 1 | |
| rat | ggcttTAAGAGGTTCTGACTACAcaataagcatctcgcttcatttttacgtcagcagatctctttgccc | ||
| ********************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003224 ENSRNOG00000002372 Sgcd | ||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042561 ENSRNOG00000002372 Sgcd | ||
| rat | (((...(((((((((((((.....(((((((.....)))).))).....)))))..)))))))).))). | 1.000 -21.30 |
| rat | chromosome:10:32332901:32332969:-1 | Same_strand|Intronic_coding|ENSRNOT00000042561|ENSRNOG00000002372 ## ENSRNOG00000002372|protein_coding|Sgcd|sarcoglycan, delta (dystrophin-associated glycoprotein) Gene [Source:MGI (curated);Acc:Sgcd-003] |
block15648 [novel_lenNOK_randfoldOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.68/0.68 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 9 | 5arm | 1 | nd | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------CCAUUCA------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------TCCATTCAGGGGCCCAGCC-------------------------------------------------------------------- | 19 | 1 | |
| rat | tgatgagcaggtgtctgatggctgtgccTCCATTCAGGGGCCCAGCCacactgaagtacactcaaatggcctcccagcatgcaaatggacacagcatgcaagcacccacacatca | ||
| ******************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000004820 ENSRNOG00000003572 Adamts2 | ||
| rat | .((((....((((..((...((((((..((((((((.(((....((((...((.((....))))..))))..)))....))..))))))))))))...))..))))....)))). | 0.410 -39.30 |
| rat | chromosome:10:36193101:36193215:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000004820|ENSRNOG00000003572 ## ENSRNOG00000003572|protein_coding|Adamts2|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 Gene [Source:MGI (curated);Acc:Adamts2-001] |
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