miR-Intess: classification

other hairpins

novel_lenNOK_randfoldOK_bulgeHIGH (748 loci)

block1934553 [novel_lenNOK_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	18/18/0.00	0.0	0.0	2	0	1	0	25	13	5arm	2	nd	0.22	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------------GGUAAGG-----------------	1	novel
seed	--------------------------GGUAAGG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	--------------------------------------------------------------------------------------------TGGTAAGGAGGTGTTTGC-------	18	1
	-------------------------TGGTAAGGAGGTGTTTGC--------------------------------------------------------------------------	18	1
rat	ctagctaacctgcagattaacttccTGGTAAGGAGGTGTTTGCagtgctaaactccactaggtctctctagctaacctgcagattaacttccTGGTAAGGAGGTGTTTGCagtgcta
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000036996 ENSRNOG00000025049 RGD1560395_predicted
rat	.((((....((((((((..(((((((....(((((((((((((((.((((....((....))......))))....))))))))..)))))))....))))))))))))))).))))	0.870 -46.00

rat

chromosome:6:55009348:55009464:-1

Same_strand|Intronic_non-coding|ENSRNOT00000036996|ENSRNOG00000025049 ## ENSRNOG00000025049|protein_coding|RGD1560395_predicted| ## {Repeats: trf 113 131 0 class=trf}

novel_Multihit (678 loci)

block15716 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.177	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	23	9	3arm	18	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------GGCUGGU------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	-----------------------------------------------------------------AGGCTGGTCCCAAGATGGAGT-----------------------	21	1
rat	ggtacgtgggtacagcttgggttctgttgtgggtcaggttctcaggctttttttttaaaagatggAGGCTGGTCCCAAGATGGAGTaggtatggtctgtcacttaatcc
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000000248 ENSRNOG00000029205 Zfp354c
rat	((....(((((((((((...((((((((.((((((((.(((.((..(((((.....))))).))))).)))).)))).))))))))......)).)))).)))))..))	0.790 -31.30

rat

chromosome:10:36395592:36395700:-1

block95869 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.057	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	13	0	3arm	13	21	0.09	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------AUACAAG---------------------------	1	miR-381
		len	cloning frequencies
			T2S1
	----------------------------------------------------------------------GATACAAGACAGGGAAGAACAA-------------	22	1
rat	cctgtcaaagaatttgttttcctgtttatttttttttcctgtgtgtcacttgtttattttttcctttctaGATACAAGACAGGGAAGAACAAatggtttttccag
	*********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000028060 ENSRNOG00000020674 Rpl27
rat	.(((..((((.((((((((((((((((..............((((((.......................))))))))))))))))..))))))..))))..)))	0.810 -19.73

rat

chromosome:10:90473354:90473458:1

block116504 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	16	10	5arm	16	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------CUAUGGU-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----------------GCTATGGTTCTGGTCCACTG-------------------------------------------------------------------------	20	1
rat	tcctttgtggtgtgctGCTATGGTTCTGGTCCACTGccttcctgactgtgagtctggaagcttcagctgttaggaaccagaagctggttagctttgaggctgtggaggg
	*************************************************************************************************************
rat	.((((..((((.....((((.(((((((((((((.(((((((.(((.....))).))))).....)).))..))).)))))).))...))))......))))..)))).	0.860 -37.50

rat

chromosome:11:28906445:28906553:-1

intergenic

block140631 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.048	no	no	0.75/0.75	20/20/1.00	0.0	0.0	1	0	1	0	10	0	5arm	13	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-----------CCGGCAG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------CCCGGCAGAATGGCTCCCGC--------------------------------------------------	20	1
rat	ccaacttgggCCCGGCAGAATGGCTCCCGCgaagaagggtggtgagaaaaagaaaggccgttctgccatcaactagatgg
	********************************************************************************
rat	(((.((.((....(((((((((((((((((........)))).))...........))))))))))).....)))).)))	0.890 -27.20

rat

chromosome:11:85238970:85239049:-1

intergenic

block160579 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	16	16	3arm	153	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UGCUCUC------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------------------------------------TTGCTCTCAATGACAACTTTGT----------------	22	1
rat	ctgggctatactgaggacaaagttgtctcctgggacttcaacagcaactcccacttctccacctttgatgctggggctggcaTTGCTCTCAATGACAACTTTGTaaagctcatttcctgg
	************************************************************************************************************************
rat	(((((......((((.(((((((((((...(((((......((((....((((..((.........))...)))))))).......)))))..)))))))))))....))))...)))))	0.970 -34.92

rat

chromosome:11:50959964:50960083:1

intergenic

block175200 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.807	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	14	15	5arm	12	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	---------------GUGCUGU-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	--------------CGTGCTGTGAGACCCAAAGTC------------------------------------------------------------------------	21	1
rat	gactgcgaggggttCGTGCTGTGAGACCCAAAGTCcttctgagatcgtctaagacaaagaagcaggtcagcagggcctatggtgactccatgtgcgccaagtgtgtc
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000048060 ENSRNOG00000001877 NP_001101795.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000028947 ENSRNOG00000001877 NP_001101795.1
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000002568 ENSRNOG00000001877 NP_001101795.1
rat	(((.(((...((..(((((((.(((..(((..(((((.((((.....(((.......)))......)))).)))))...)))...))))).)))))))...))))))	0.500 -28.30

rat

chromosome:11:85301916:85302022:1

block176321 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.079	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	13	5arm	36	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------GACACCA----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------TGACACCATGTTGTATTTCC----------------------------------------------------------------------------------	20	1
rat	gtaacagtagagtactTGACACCATGTTGTATTTCCtcggcttgaagaacagattttcttaaacactggggagattttacagtcatgacccaagtcagaacttatttttaactgggac
	**********************************************************************************************************************
rat	((..((((((((((.(((((..((((((((((((((((((....(((((......))))).....)))))))))...))))).))))......)))))....))))))..))))..))	0.470 -28.50

rat

chromosome:12:512:629:-1

intergenic

block176335 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.126	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	13	5arm	36	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------GACACCA----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------TGACACCATGTTGTATTTCC----------------------------------------------------------------------------------	20	1
rat	gtaacagtagagtactTGACACCATGTTGTATTTCCtcggcttgaagaacagcttttcttaaacactggggagattttgcagtcatgacccaagtcagaacttatttttaactgggac
	**********************************************************************************************************************
rat	((..((((((((((.(((((..((((((((((((((((((....(((((......))))).....))))))))))...)))).))))......)))))....))))))..))))..))	0.430 -28.60

rat

chromosome:12:5360:5477:-1

intergenic

block176342 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.079	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	13	5arm	36	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------GACACCA----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------TGACACCATGTTGTATTTCC----------------------------------------------------------------------------------	20	1
rat	gtaacagtagagtactTGACACCATGTTGTATTTCCtcggcttgaagaacagattttcttaaacactggggagattttacagtcatgacccaagtcagaacttatttttaactgggac
	**********************************************************************************************************************
rat	((..((((((((((.(((((..((((((((((((((((((....(((((......))))).....)))))))))...))))).))))......)))))....))))))..))))..))	0.470 -28.50