other hairpins
novel_Multihit_nonpairedHIGH_bulgeHIGH (626 loci)
block496979 [novel_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.573 | no | no | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 17 | 5 | 3arm | 38 | nd | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------CUGGCAU--------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ------------------------------------------------------ACTGGCATGGCCTTCCGTGTTCCT----------------- | 24 | 1 | |
| rat | actggtgctgccaacactgtggacaaagtcatcccagagctgaacgggaagctcACTGGCATGGCCTTCCGTGTTCCTacatgcaatgtatctgt | ||
| *********************************************************************************************** | |||
| rat | ((.((((((((.(((((...(((....(((((.((((((((........)))))..))).)))))..)))))))).......)))..))))).)) | 0.520 -24.10 |
| rat | chromosome:15:58434603:58434697:1 | intergenic |
block1030760 [novel_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | 10 | 3arm | 12 | nd | 0.41 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------UUGGUGG------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| ----------------------------------------------------CTTGGTGGCCAAAGCTGTTTCA---------- | 22 | 1 | |
| rat | agtcaggggcagagcaggtggcaggcctttgtcattctagcttgatgtctggCTTGGTGGCCAAAGCTGTTTCAtgcctaggac | ||
| ************************************************************************************ | |||
| rat | .(((..(((((((((((.(((((((((..(((((........)))))...)))))....))))...))))))..)))))..))) | 0.990 -31.80 |
| rat | chromosome:1:207626977:207627060:1 | intergenic |
block2662591 [novel_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.587 | no | no | 0.50/0.53 | 19/23/0.71 | 0.0 | 0.0 | 4 | 0 | 3 | 0 | 10 | 3 | 3arm | 49 | nd | 0.40 | 4 | 7 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------CCGUUGU---------------------- | 4 | novel | ||
| seed | -----------------------------------------CGUUGUG--------------------- | 2 | novel | ||
| seed | ---------------------------------------UCCGUUG----------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T3S1 | |||
| ---------------------------------------TCCGTTGTGGATCTGACATG---------- | 20 | - | - | 4 | |
| ----------------------------------------CCGTTGTGGATCTGACATG---------- | 19 | 1 | 1 | - | |
| --------------------------------------ATCCGTTGTGGATCTGACATGCC-------- | 23 | - | - | 1 | |
| rat | ctcactggcacagccttccatgttcctacccccaatgtaTCCGTTGTGGATCTGACATGccgtctggag | ||||
| ********************************************************************* | |||||
| ------------------------------------------------------------------------------- | ENSRNOT00000018788 ENSRNOG00000014029 Klhl13 | ||||
| rat | (((..((((((((...((((((....(((.......))).....)))))).)))...)))))....))) | 0.460 -13.60 | |||
| rat | chromosome:X:10384760:10384828:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000018788|ENSRNOG00000014029 ## ENSRNOG00000014029|protein_coding|Klhl13|kelch-like 9 [Source:RefSeq_peptide;Acc:NP_001101414] |
novel_lenNOK_multiarm_DicerNOK_loopOverlap (622 loci)
sblock10011 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.160 | no | no | 0.44/0.52 | 18/22/0.40 | 0.0 0.0 0.0 | 2.0 0.0 0.0 | 2 2 1 | 0 0 0 | 1 1 1 | 0 0 0 | 0 24 5 | 4 -17 -2 | 5arm 5arm_loop_3arm 3arm_loop | 3 7 7 | nd nd nd | 0.22 0.63 0.29 | 1 10 2 | 5 | 1 | -6 | -6 |
| reads | miRBase family seed | ||
| seed | -------------------------GAUAUCU---------------------------- | 2 | novel |
| seed | -CUGCUCA---------------------------------------------------- | 2 | novel |
| seed | -----------------------------------CCUACGU------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------GGATATCTTGACCTACGTG----------------- | 19 | 2 | |
| ----------------------------------ACCTACGTGGCTTGGAAGATC----- | 21 | 1 | |
| ACTGCTCATCGTCTCAAA------------------------------------------ | 18 | 1 | |
| ACTGCTCATCGTCTCAAACCCA-------------------------------------- | 22 | 1 | |
| rat | ACTGCTCATCGTCTCAAACCCAgtGGATATCTTGACCTACGTGGCTTGGAAGATCagcgg | ||
| ************************************************************ | |||
| rat | .(((((.(((.((.(((.((..((((..........))))..)).))))).))).))))) | 1.000 -16.30 |
| rat | chromosome:6:78687385:78687444:-1 | intergenic |
sblock10013 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.265 | no | no | 0.63/0.79 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 14 | 0 -2 | 5arm 3arm_loop | 2 2 | nd nd | 0.21 0.37 | 2 5 | 2 | 2 | -2 | -5 |
| reads | miRBase family seed | |||
| seed | ----------------------------------GGCGGCU------------------------- | 1 | novel | |
| seed | -----------UACUGCU------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ----------GTACTGCTGGGCTTGCTGC------------------------------------- | 19 | - | 1 | |
| ---------------------------------AGGCGGCTCGGTGCTCGGG-------------- | 19 | 1 | - | |
| rat | gctcgggatgGTACTGCTGGGCTTGCTGCagtcAGGCGGCTCGGTGCTCGGGcaggcgatggagca | |||
| ****************************************************************** | ||||
| ---------------------------------------------------------------------------- | ENSRNOT00000043336 ENSRNOG00000004061 NP_001102493.1 | |||
| ---------------------------------------------------------------------------- | ENSRNOT00000041463 ENSRNOG00000004061 NP_001102493.1 | |||
| rat | ((((...((.((.(((((((((..(((((......))))).....)))))).))))).)).)))). | 0.960 -26.80 | ||
| rat | chromosome:6:79728290:79728355:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000043336|ENSRNOG00000004061 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000005439|ENSRNOG00000004061 ## ENSRNOG00000004061|protein_coding|NP_001102493.1|similar to Pinin (LOC368070), mRNA [Source:RefSeq_dna;Acc:NM_001109023] |
sblock10018 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.527 | no | no | 0.67/0.83 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.3 | 1 2 3 | 0 0 0 | 1 1 2 | 0 0 0 | 30 26 15 | 0 -5 6 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.17 0.37 0.16 | 1 4 1 | 6 | 3 | 0 | -5 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------GGACCAU-------------------------- | 3 | novel | ||
| seed | ------------------------------------------------------CUCCCGG------------------------------------- | 2 | novel | ||
| seed | -------------------------------GGCGGUG------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T2S1 | |||
| -----------------------------------------------------GCTCCCGGCGGCGGACCAT-------------------------- | 19 | 2 | - | - | |
| ----------------------------------------------------------------CGGACCATGGCCCTAGTGG--------------- | 19 | - | 2 | - | |
| ------------------------------AGGCGGTGGCCGCAGCCG-------------------------------------------------- | 18 | 1 | - | - | |
| ----------------------------------------------------------------CGGACCATGGCCCTAGTG---------------- | 18 | - | - | 1 | |
| rat | ccagcggcgcggggaaagtttaccggacgtAGGCGGTGGCCGCAGCCGtagcgGCTCCCGGCGGCGGACCATGGCCCTAGTGGgcggccgcggccctg | ||||
| ************************************************************************************************** | |||||
| ..........................................................................................................>> | ENSRNOT00000007314 ENSRNOG00000005264 Sav1_predicted | ||||
| rat | .(((.(((.((.((...((((((.((.....(((.((((((((.((((..........)))).)))).)))).))))).))))))..)).)))))))) | 0.410 -47.60 | |||
| rat | chromosome:6:92102040:92102137:-1 | intergenic ## {SimpF: 1 Eponine} |
sblock10030 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.777 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 10 | -2 -1 | 5arm_loop 3arm | 1 1 | nd nd | 0.47 0.28 | 3 2 | 2 | 2 | 1 | 0 |
| reads | miRBase family seed | |||
| seed | -------------UAAACGG------------------------------------------- | 1 | novel | |
| seed | ------------------------------------UGUAAGU-------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------TTGTAAGTTGCTGTGATG---------- | 18 | - | 1 | |
| ------------ATAAACGGCCCCTTCTATT-------------------------------- | 19 | 1 | - | |
| rat | gcaaccacccatATAAACGGCCCCTTCTATTgatcTTGTAAGTTGCTGTGATGctatgttagc | |||
| *************************************************************** | ||||
| rat | (((((....(((....(((((..(((.((.......)).)))..))))).)))....))).)) | 0.920 -8.10 | ||
| rat | chromosome:6:96792750:96792812:-1 | intergenic |
sblock10037 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.089 | no | no | 0.47/0.74 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 24 13 | -1 12 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.26 | 2 2 | 2 | 1 | 10 | 10 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CCCAAGG------------------------ | 1 | novel |
| seed | -------------------------CCAUGGG---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----------------------------------------------------------CCCCAAGGTGGGAGGCTCC------------- | 19 | 1 | |
| ------------------------ACCATGGGAACTGAACAGA----------------------------------------------- | 19 | 1 | |
| rat | tgaggcagcagtgagtgatctgaaACCATGGGAACTGAACAGAattctgctcagacagCCCCAAGGTGGGAGGCTCCatatcagctctca | ||
| ****************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000010588 ENSRNOG00000007660 Fntb | ||
| rat | .(((((......((((..(((...(((.((((..((((.(((....))).)))).....)))).))).))).)))).......)).))). | 0.830 -27.62 |
| rat | chromosome:6:99492868:99492957:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000010588|ENSRNOG00000007660 ## ENSRNOG00000007660|protein_coding|Fntb|Protein farnesyltransferase subunit beta (EC 2.5.1.58) (CAAX farnesyltransferase subunit beta) (RAS proteins prenyltransferase beta) (FTase-beta). [Source:UniProtKB/Swiss-Prot;Acc:Q02293] |
sblock10039 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.468 | no | no | 0.56/0.61 | 18/22/0.33 | 0.0 0.0 | 2.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 14 17 | -2 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.28 0.22 | 3 1 | 3 | 3 | 0 | -2 |
| reads | miRBase family seed | ||||
| seed | ---------------UGCAAUC---------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------GGCGCUG--------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T3S2 | T4S2 | |||
| --------------ATGCAATCGACTCCCGGA------------------------------------------------ | 18 | - | 1 | - | |
| --------------ATGCAATCGACTCCCGGAGCAG-------------------------------------------- | 22 | - | - | 1 | |
| ---------------------------------------------AGGCGCTGGGAAGACTGT----------------- | 18 | 1 | - | - | |
| rat | ctctggacgcgaaaATGCAATCGACTCCCGGAGCAGgtgagtgttAGGCGCTGGGAAGACTGTgagggttctgtccacga | ||||
| ******************************************************************************** | |||||
| rat | .((((((((.(((..((((.((...((((((.((.............)).)))))).)).))))....))))))))).)) | 0.990 -23.32 | |||
| rat | chromosome:6:102065592:102065671:-1 | intergenic |
sblock10065 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.47/0.79 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 35 36 25 | 8 -4 6 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.37 0.33 0.16 | 5 3 2 | 3 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------AGAGCUG---------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------AAACACC------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------AGCGCGG------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| ------------------------------------------------------------------------GAGCGCGGGGCTGGGAGGT------------------------- | 19 | - | - | 1 | |
| -----------------------------------TAAACACCAGATCCGGCTT-------------------------------------------------------------- | 19 | - | 1 | - | |
| --------------------------------------------------------------GAGAGCTGCAGAGCGCGG------------------------------------ | 18 | 1 | - | - | |
| rat | ggtgcttttcaggcctacgtcaccgcctctccattTAAACACCAGATCCGGCTTtaaatagtGAGAGCTGCAGAGCGCGGGGCTGGGAGGTgcgtgctcccgaggcgagaggcgcc | ||||
| ******************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005873 ENSRNOG00000004300 Gtf2a1 | ||||
| rat | ((((((((((..((((.((.(((((((((............((((..((((((((...((((....)))).))))).)))..)))))))))).)))....)))))))))))))))) | 0.990 -51.90 | |||
| rat | chromosome:6:115209088:115209203:-1 | Same_strand|Intronic_coding|ENSRNOT00000005873|ENSRNOG00000004300 ## ENSRNOG00000004300|protein_coding|Gtf2a1|Transcription initiation factor IIA subunit 1 (General transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)]. [Source:UniProtKB/Swiss-Prot;Acc:O08949] ## {SimpF: oe = 0.80 -1 CpG} |
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