other hairpins
novel_lenNOK_multiarm_DicerNOK_loopOverlap (622 loci)
sblock2997 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.123 | no | no | 0.52/0.61 | 18/21/0.43 | 0.0 0.4 0.0 | 0.0 1.0 0.0 | 1 5 1 | 0 0 0 | 1 2 1 | 0 0 0 | 1 20 4 | 9 -12 10 | 5arm 5arm_loop_3arm 3arm | 1 2 2 | nd nd nd | 0.21 0.33 0.37 | 2 5 3 | 7 | 2 | 1 | -3 |
| reads | miRBase family seed | |||
| seed | ---------------------AGGUUUU--------------------------------------- | 4 | novel | |
| seed | ---------------------------------------------CACCACU--------------- | 1 | novel | |
| seed | --GGCUUGA---------------------------------------------------------- | 1 | novel | |
| seed | -----------------------GUUUUGG------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| --------------------AAGGTTTTGGCAGGCAGGACA-------------------------- | 21 | 2 | - | |
| --------------------AAGGTTTTGGCAGGCAGGAC--------------------------- | 20 | - | 1 | |
| ----------------------GGTTTTGGCAGGCAGGAC--------------------------- | 18 | 1 | - | |
| --------------------------------------------CCACCACTGAAGTAGAGGG---- | 19 | - | 1 | |
| --------------------AAGGTTTTGGCAGGCAGG----------------------------- | 18 | 1 | - | |
| -AGGCTTGACTCAGGGAAGT----------------------------------------------- | 19 | - | 1 | |
| rat | tAGGCTTGACTCAGGGAAGTAAGGTTTTGGCAGGCAGGACAtagCCACCACTGAAGTAGAGGGcttg | |||
| ******************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002464 ENSRNOG00000038370 Ahsg | |||
| >>>>>>>>..................................................................... | ENSRNOT00000058422 ENSRNOG00000038370 Ahsg | |||
| >>>>>>>>..................................................................... | ENSRNOT00000058421 ENSRNOG00000038370 Ahsg | |||
| rat | (((((((.((((((((..((...((((((.....))))))...))..)).)))).))...))))))) | 0.960 -19.30 | ||
| rat | chromosome:11:80330910:80330976:-1 | Same_strand|Intronic_coding|ENSRNOT00000002464|ENSRNOG00000038370 ## Same_strand|Boundary_non-coding|ENSRNOT00000058422|ENSRNOG00000038370 ## ENSRNOG00000038370|protein_coding|Ahsg|Alpha-2-HS-glycoprotein precursor (Fetuin-A) (Glycoprotein PP63) (59 kDa bone sialic acid-containing protein) (BSP). [Source:UniProtKB/Swiss-Prot;Acc:P24090] |
sblock3074 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.103 | no | no | 0.53/0.72 | 18/19/0.00 | 0.0 1.0 0.0 0.0 0.0 | 0.0 0.5 0.0 0.0 0.0 | 2 2 1 1 1 | 0 0 0 0 0 | 2 2 1 1 1 | 0 0 0 0 0 | 0 21 27 31 29 | 34 11 6 3 -2 | 5arm 5arm 5arm 5arm 3arm_loop | 1 2 2 2 2 | nd nd nd nd nd | 0.22 0.37 0.47 0.61 0.39 | 2 5 5 4 3 | 7 | 5 | -1 | 0 |
| reads | miRBase family seed | ||||||
| seed | -GGAGCCA---------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------------------------------------AGCGUUU--------------------------------------- | 1 | novel | ||||
| seed | --------------------------------AAAAGCA--------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------GCUCUGG----------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------AGGCUCU------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------------------UGGAAAA------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| GGGAGCCAGTCGGGAGTG------------------------------------------------------------------------------------ | 18 | 1 | - | - | - | 1 | |
| -----------------------GGCTCTGGAAAAAGCAGG------------------------------------------------------------- | 18 | - | - | - | - | 1 | |
| ---------------------CAGGCTCTGGAAAAAGCAG-------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| -------------------------------------------------------GAGCGTTTACCTGCAAGC----------------------------- | 18 | - | 1 | - | - | - | |
| -------------------------------AAAAAGCAGGGCTACCCG----------------------------------------------------- | 18 | - | 1 | - | - | - | |
| ---------------------------CTGGAAAAAGCAGGGCTAC-------------------------------------------------------- | 19 | - | - | 1 | - | - | |
| rat | GGGAGCCAGTCGGGAGTGtacCAGGCTCTGGAAAAAGCAGGGCTACCCGagctgaGAGCGTTTACCTGCAAGCtacggcccggcagctcccatggcgctcct | ||||||
| ****************************************************************************************************** | |||||||
| rat | ((((((..(((((((((...((.((((.(((.....(((((...((....((.....))))...)))))...))).)))).))..))))))..))))))))) | 0.450 -41.90 | |||||
| rat | chromosome:11:17193485:17193586:1 | intergenic |
sblock7478 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.644 | no | no | 0.68/0.89 | 18/20/0.14 | 1.0 1.0 0.0 | 1.0 0.7 0.0 | 3 3 1 | 0 0 0 | 2 2 1 | 0 0 0 | 8 19 9 | 4 -7 9 | 5arm 5arm_loop_3arm 3arm | 1 6 6 | nd nd nd | 0.25 0.37 0.47 | 2 4 4 | 7 | 4 | 5 | 4 |
| reads | miRBase family seed | |||||
| seed | -----------------------CAGCCGC-------------------------------------------- | 2 | novel | |||
| seed | ---------CGCCACC---------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------UGCUGAG-------------------- | 1 | novel | |||
| seed | ------------CACCAAG------------------------------------------------------- | 1 | novel | |||
| seed | --------------------CAGCAGC----------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S1 | |||
| ----------------------GCAGCCGCCGCAGCCGCC---------------------------------- | 18 | - | - | - | 2 | |
| -------------------GCAGCAGCCGCCGCAGCCG------------------------------------ | 19 | - | 1 | - | - | |
| -----------CCACCAAGGCAGCAGCCG--------------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------------------------------GTGCTGAGGAGCCGGAGAC--------- | 19 | - | - | 1 | - | |
| --------GCGCCACCAAGGCAGCAGCC---------------------------------------------- | 20 | 1 | - | - | - | |
| --------GCGCCACCAAGGCAGCAGC----------------------------------------------- | 19 | 1 | - | - | - | |
| rat | atccgcgaGCGCCACCAAGGCAGCAGCCGCCGCAGCCGCCgccgctGTGCTGAGGAGCCGGAGACgcgggcgga | |||||
| ************************************************************************** | ||||||
| rat | .(((((..(((((.((..((((.((((.((.((....)).)).))))))))..))....))...)))..))))) | 0.670 -31.70 | ||||
| rat | chromosome:3:17465370:17465443:-1 | intergenic ## {Repeats: C-rich 1 147 -1 class=Low_complexity,trf 3 20 0 class=trf,trf 14 20 0 class=trf,C-rich 136 147 -1 class=Low_complexity} ## {SimpF: 1 Eponine} |
sblock7803 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.942 | no | no | 0.56/0.74 | 18/21/0.29 | 0.5 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 1 2 2 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 21 48 41 13 | 14 -13 -5 25 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 2 | nd nd nd nd | 0.17 0.58 0.43 0.37 | 3 9 4 3 | 7 | 3 | 0 | 16 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------AGCCGCC------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------CGGACAU------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------UGCUGGA---------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------UGGUGUC------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------AUGGUGU------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| ----------------------------------------------------------GCGGACATCACAGACCTGGGC----------------------------------------- | 21 | - | - | 2 | |
| ----------------------------------------------------------------------------------------AAGCCGCCGCCAGAGCCTC------------- | 19 | - | - | 2 | |
| ------------------------------------------------GTGCTGGAACGCGGACATC----------------------------------------------------- | 19 | 1 | - | - | |
| ----------------------ATGGTGTCAGAGGAAGCC-------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ---------------------GATGGTGTCAGAGGAAGCC-------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | ctgtccgccggccgccctcggGATGGTGTCAGAGGAAGCCaggcagttGTGCTGGAACGCGGACATCACAGACCTGGGCgcttccgggAAGCCGCCGCCAGAGCCTCggagaggaacagc | ||||
| ************************************************************************************************************************ | |||||
| rat | ((((...((..(((..(((.((.(((((((...((((((((((...(((((.((.........)).))))).))))...))))))..))...))))))).)))...)))...)).)))). | 0.480 -42.50 | |||
| rat | chromosome:3:169310816:169310935:-1 | intergenic ## {SimpF: oe = 0.89 -1 CpG} |
sblock9417 [novel_lenNOK_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.538 | no | no | 0.47/0.56 | 18/19/0.00 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 0 35 42 21 | 35 -1 -8 -3 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop | 2 2 2 2 | nd nd nd nd | 0.78 0.47 0.37 0.26 | 9 4 4 2 | 4 | 1 | 0 | 1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------AACCCAU-------------------------------- | 1 | novel |
| seed | -CCCCUCU-------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------GGUACAA-------------------------------------------- | 1 | novel |
| seed | ------------------------------------AGCUCUU--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------TAGCTCTTGGTACAAGGGA---------------------------------------- | 19 | 1 | |
| ------------------------------------------------------TAACCCATGGACTTGCAGT--------------------- | 19 | 1 | |
| CCCCCTCTTTTTGGTCTC---------------------------------------------------------------------------- | 18 | 1 | |
| ------------------------------------------TGGTACAAGGGATAACCCA--------------------------------- | 19 | 1 | |
| rat | CCCCCTCTTTTTGGTCTCaacaagaacagcctgctTAGCTCTTGGTACAAGGGATAACCCATGGACTTGCAGTaaggatgtgcttgtcttcagt | ||
| ********************************************************************************************** | |||
| rat | ..........((((.....(((((.(((.((((((..((....(((.((.(((....))).)).))).)))))).)).))).)))))..)))). | 0.570 -20.50 |
| rat | chromosome:5:114553153:114553246:-1 | intergenic |
novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH (617 loci)
block1826 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 | 0.3 | 6 | 0 | 4 | 0 | 1 | 20 | 3arm | 1 | nd | 0.33 | 3 | 6 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --------------------------------------------------------------------AAAGGUU------------ | 6 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T5S1 | T5S2 | |||
| -------------------------------------------------------------------CAAAGGTTAATTTGGGGTC- | 19 | 1 | - | 1 | 2 | |
| -------------------------------------------------------------------CAAAGGTTAATTTGGGGT-- | 18 | 1 | 1 | - | - | |
| rat | gacttcaaatgaatcatagcagctctcactggagccctctcctcaaagttctggatgagtatagcatCAAAGGTTAATTTGGGGTCa | |||||
| *************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000003150 ENSRNOG00000002294 LOC687335 | |||||
| rat | (((..(((((.((((......((((((((((((((............))))))).))))...)))......)))).)))))..))). | 0.490 -25.30 | ||||
| rat | chromosome:10:4088620:4088706:-1 | Same_strand|Intronic_coding|ENSRNOT00000003150|ENSRNOG00000002294 ## ENSRNOG00000002294|protein_coding|LOC687335|similar to kinesin-like motor protein C20orf23 (LOC689142), mRNA [Source:RefSeq_dna;Acc:NM_001109526] |
block4201 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 11 | 3arm | 1 | nd | 0.47 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------AUUUCCA---------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------TATTTCCATAATGTGCTA | 18 | 1 | |
| rat | agcctttaggatgttgtcagctcttttcttttctatttattatttctaagagttgattTATTTCCATAATGTGCTA | ||
| **************************************************************************** | |||
| rat | (((..((((((....((((((((((......................)))))))))).....))).)))...))). | 1.000 -16.65 |
| rat | chromosome:10:9350508:9350583:-1 | intergenic |
block6478 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | 14 | 3arm | 1 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------GGUGGGC------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------------------------------------------------------TGGTGGGCTCAACATGTCC- | 19 | 1 | |
| rat | aggacttggcttcccactgggcaaagctgccagggagagaggtggctgggcaggTGGTGGGCTCAACATGTCCt | ||
| ************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004222 ENSRNOG00000003131 Rab26 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004192 ENSRNOG00000003131 Rab26 | ||
| rat | (((((((((((..(((((..((..(((..((.........))..)))..)).)))))..))).)))...))))) | 1.000 -34.90 |
| rat | chromosome:10:13765155:13765228:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000004261|ENSRNOG00000003131 ## Same_strand|Intronic_coding|ENSRNOT00000004192|ENSRNOG00000003131 ## ENSRNOG00000003131|protein_coding|Rab26|Ras-related protein Rab-26. [Source:UniProtKB/Swiss-Prot;Acc:P51156] |
block8116 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.72/0.72 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | 16 | 5arm | 1 | nd | 0.39 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -CAGCUAC---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| CCAGCTACGCCAGCAGGG------------------------------------------------------------ | 18 | 1 | |
| rat | CCAGCTACGCCAGCAGGGttgcttcaggttgctccagtccatgagcacttggggccacctgcctagctttgtgctggg | ||
| ****************************************************************************** | |||
| rat | (((((...((..(((((...((..((((.(((((........)))))))))..))..)))))...)).....))))). | 1.000 -36.30 |
| rat | chromosome:10:16103163:16103240:-1 | intergenic |
block8320 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 35 | 5arm | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----UUCAGGG------------------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----TTTCAGGGTTTCAAAGGT-------------------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | tcccTTTCAGGGTTTCAAAGGTctgcctagagggtgagtgtgtcagaaggccagcctgaggaggaagggtctgataccttcaaccctcagctgcacctttgtgagttctacttctgggaa | ||
| ************************************************************************************************************************ | |||
| rat | ((((....((..((((((((((..((...(((((((((.((((((((...((..(((....)))..)).)))))))).)))).))))).))...))))))).)))..))......)))). | 1.000 -48.70 |
| rat | chromosome:10:16554716:16554835:-1 | intergenic |
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