miR-Intess™

other hairpins

novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH (617 loci)

block1805284 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.005

no

no

0.67/0.67

18/18/0.00

0.0

0.0

2

0

1

0

4

28

5arm

2

nd

0.33

2

2

1

na

na

		reads	miRBase family seed
seed	-----GGGGGCG----------------------------------------------------------------------------------------------	1	novel
seed	------------------------------GGGGGCG---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	-----------------------------TGGGGGCGGGGTCTAAAG-----------------------------------------------------------	18	1
	----TGGGGGCGGGGTCTAAAG------------------------------------------------------------------------------------	18	1
rat	agctTGGGGGCGGGGTCTAAAGcccagctTGGGGGCGGGGTCTAAAGcccagcttggggggcggggtctaaagcccagctgggggctgaagccaaagccctggtta
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016271 ENSRNOG00000011967 LOC313749
	--------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016249 ENSRNOG00000011967 LOC313749
rat	((((..(((((..((.((..(((((((((...((((.((..((...((((........)))).))..))...))))))))..)))))..))))...))))))))).	0.950 -51.30

rat

chromosome:5:169750281:169750386:-1

Opposite_strand|Intronic_coding|ENSRNOT00000016271|ENSRNOG00000011967 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000046773|ENSRNOG00000011967 ## ENSRNOG00000011967|protein_coding|LOC313749|LOC313749 protein. [Source:UniProtKB/TrEMBL;Acc:Q32Q04] ## {Repeats: trf 40 58 0 class=trf,trf 42 60 0 class=trf}

block1805285 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.010

no

no

0.67/0.67

18/18/0.00

0.0

0.0

2

0

1

0

4

28

5arm

2

nd

0.33

2

2

1

na

na

		reads	miRBase family seed
seed	------------------------------GGGGGCG--------------------------------------------------------------------	1	novel
seed	-----GGGGGCG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----TGGGGGCGGGGTCTAAAG-----------------------------------------------------------------------------------	18	1
	-----------------------------TGGGGGCGGGGTCTAAAG----------------------------------------------------------	18	1
rat	agctTGGGGGCGGGGTCTAAAGcccagctTGGGGGCGGGGTCTAAAGcccagcttggggggcggggtctaaagcccagctgggggctgaagccaaagccctggtt
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016271 ENSRNOG00000011967 LOC313749
	-------------------------------------------------------------------------------------------------------------------	ENSRNOT00000016249 ENSRNOG00000011967 LOC313749
rat	((((..(((((..((.((..(((((((((...((((.((..((...((((........)))).))..))...))))))))..)))))..))))...)))))))))	0.940 -50.60

rat

chromosome:5:169750282:169750386:-1

Opposite_strand|Intronic_coding|ENSRNOT00000016271|ENSRNOG00000011967 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000046773|ENSRNOG00000011967 ## ENSRNOG00000011967|protein_coding|LOC313749|LOC313749 protein. [Source:UniProtKB/TrEMBL;Acc:Q32Q04] ## {Repeats: trf 65 83 0 class=trf,trf 67 85 0 class=trf}

novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH (533 loci)

block13334 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.437

no

no

0.61/0.61

18/18/0.00

0.0

0.0

15

0

8

0

6

12

3arm

1

nd

0.44

4

23

8

na

na

		reads	miRBase family seed
seed	----------------------------------------------------------CUCCCAA----------------	23	miR-150
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T3S2	T4S2	T5S1
	---------------------------------------------------------TCTCCCAACCCTCACTGG------	18	5	1	2	2	7	3	1	2
rat	ctttggatatagtggttcctgaggatgtctgtaaggtcaacataaactagaacagcaTCTCCCAACCCTCACTGGaaaagg
	*********************************************************************************
	-------------------------------------------------------------------------------------------	ENSRNOT00000047970 ENSRNOG00000028845 Ebf1
rat	((((.....((((((....((.(((((.((((..(((........)))...)))))))))..))....))))))..)))).	0.980 -16.00

rat

chromosome:10:29994278:29994358:-1

Opposite_strand|Intronic_coding|ENSRNOT00000047970|ENSRNOG00000028845 ## ENSRNOG00000028845|protein_coding|Ebf1|Transcription factor COE1 (OE-1) (O/E-1) (Early B-cell factor) (Olfactory neuronal transcription factor) (Olf-1). [Source:UniProtKB/Swiss-Prot;Acc:Q63398]

block16540 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.763

no

no

0.33/0.33

18/18/0.00

0.0

0.0

7

0

6

0

37

0

5arm

1

nd

0.39

4

11

6

na

na

		reads	miRBase family seed
seed	--------------------------------------AGUCUUU------------------------------------------------------------------------	11	novel
		len	cloning frequencies
			T2S1	T3S1	T3S2	T4S1	T4S2	T5S2
	-------------------------------------AAGTCTTTAAGAGCAAAC--------------------------------------------------------------	18	5	1	1	1	1	2
rat	agttttgtttagtatctggtactcttcctagtttgtaAAGTCTTTAAGAGCAAACattatgtttcacattcttttcaccatcttatagctaaggtttagtatataactcccaaacct
	*********************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000007676 ENSRNOG00000005828 Skp1a
rat	((.((((...(((.....(((((...(((((.((((((.((....(((((.((((.....))))....)))))......)).))))))))).))...)))))...)))..)))).))	0.840 -13.00

rat

chromosome:10:37672985:37673101:-1

Opposite_strand|Intronic_coding|ENSRNOT00000007676|ENSRNOG00000005828 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000014958|ENSRNOG00000005828 ## ENSRNOG00000005828|protein_coding|Skp1a|S-phase kinase-associated protein 1A (Cyclin A/CDK2-associated protein p19) (p19A) (p19skp1). [Source:UniProtKB/Swiss-Prot;Acc:Q6PEC4]

block18500 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.111

no

no

0.47/0.50

18/19/0.00

0.0

0.0

10

0

8

0

6

17

5arm

1

nd

0.44

4

15

8

na

na

		reads	miRBase family seed
seed	-------GAGGCAG------------------------------------------------------------------	15	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T2S2	T3S1	T4S2	T5S1	T5S2
	------TGAGGCAGGATGTCCATT--------------------------------------------------------	18	2	1	2	2	1	4	-	-
	------TGAGGCAGGATGTCCATTT-------------------------------------------------------	19	-	1	-	-	-	-	1	1
rat	ggaagcTGAGGCAGGATGTCCATTtgggtgacaagtttattagaagagttactgataccatggacagacagtaacatcct
	********************************************************************************
rat	(((...((..((....(((((((...((((...(((...((....))...)))..)))))))))))....))..))))).	0.410 -16.60

rat

chromosome:10:41464911:41464990:-1

intergenic

block20993 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.569

no

no

0.33/0.33

18/18/0.00

0.0

0.0

13

0

7

0

7

2

3arm

3

nd

0.50

4

13

7

na

na

		reads	miRBase family seed
seed	-----------------------------AUUAUUU-----------------	13	novel
		len	cloning frequencies
			T1S2	T2S1	T2S2	T3S1	T4S1	T5S1	T5S2
	----------------------------CATTATTTGAAAACCAGG-------	18	1	1	3	2	3	2	1
rat	ttagagtttggcaatcgaggcgaggctgCATTATTTGAAAACCAGGaacttta
	*****************************************************
rat	.((((((((((...((((((((....)))....)))))...)))..)))))))	0.920 -8.30

rat

chromosome:10:47025385:47025437:-1

intergenic

block22983 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.027

no

no

0.22/0.26

18/19/0.00

0.0

0.0

10

0

6

0

25

12

3arm

1

nd

0.32

4

16

6

na

na

		reads	miRBase family seed
seed	------------------------------------------------------------------------GUAAACA------------------------------------	16	miR-30a/30b/30c/30d/30e/384
		len	cloning frequencies
			T1S1	T2S1	T2S2	T3S1	T3S2	T4S2
	-----------------------------------------------------------------------TGTAAACATTTTTTTGACC-------------------------	19	1	-	-	10	2	1
	-----------------------------------------------------------------------TGTAAACATTTTTTTGAC--------------------------	18	-	1	1	-	-	-
rat	caaagttggcatgtgtccttttttaaagaaaaatgcatatatttttaaataaaatgtttattttaaagagaTGTAAACATTTTTTTGACCagataatgacgatgcctggctgtga
	*******************************************************************************************************************
rat	((.(((((((((.((((.((.(((..(((((((((..(((((((((...((((((....)))))).)))))))))..)))))))))....))).)).))))))))).)))).)).	0.930 -25.50

rat

chromosome:10:51492908:51493022:-1

intergenic

block27697 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.296

no

no

0.47/0.50

18/19/0.00

0.1

0.0

15

0

8

0

8

7

5arm

1

nd

0.37

4

15

8

na

na

		reads	miRBase family seed
seed	----------GGUGGAA---------------------------------------------------------	14	novel
seed	---------UGGUGGA----------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S2	T3S1	T3S2	T4S2	T5S1	T5S2
	---------TGGTGGAAACGAGGTTGT-----------------------------------------------	18	3	1	2	-	1	2	3	2
	--------TTGGTGGAAACGAGGTTGT-----------------------------------------------	19	-	-	-	1	-	-	-	-
rat	tctgggcaTTGGTGGAAACGAGGTTGTcggggtggactgagggcgcgctgaggctggttttgaatgtcagggaa
	**************************************************************************
rat	(((.((((((....(((((..((((.((((.(((.........))).)))))))).))))).))))))..))).	0.520 -18.70

rat

chromosome:10:61802236:61802309:-1

intergenic

block36137 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.255

no

no

0.28/0.28

18/18/0.00

0.0

0.0

14

0

10

0

6

10

5arm

2

nd

0.39

5

19

10

na

na

reads

miRBase family seed

seed

-------AUUGACA------------------------------------------------------

19

novel

len

cloning frequencies

T1S1

T1S2

T2S1

T2S2

T3S1

T3S2

T4S1

T4S2

T5S1

T5S2

------TATTGACAGGTGAAATAT--------------------------------------------

18

2

1

5

1

3

2

1

2

1

1

rat

gccaccTATTGACAGGTGAAATATatgcttctggttcccaatctgcccttctcctgtgcaagcaaggc

********************************************************************

rat

(((.....((((((((.(((......((...(((...)))....))..))).))))).)))....)))

0.990 -14.50

rat

chromosome:10:77963270:77963337:-1

intergenic

block36287 [novel_lenNOK_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters

miRNA

randfold

RNA

rep

GC min/max

len min/max/mir_range

5'var

3'var

reads

reads edited

libs

libs edited

base distance

loop distance

position

locations

exon distance

unpaired

max bulge

total reads

total libs

dicer

drosha

no

0.151

no

no

0.47/0.50

18/19/0.00

0.0

0.3

20

0

8

0

5

20

5arm

1

nd

0.50

4

20

8

na

na

		reads	miRBase family seed
seed	------GCCAUGU----------------------------------------------------------------------------------------------------	20	novel
		len	cloning frequencies
			T1S2	T2S1	T2S2	T3S1	T3S2	T4S2	T5S1	T5S2
	-----TGCCATGTCCACTCTACT------------------------------------------------------------------------------------------	18	1	1	1	3	3	3	2	-
	-----TGCCATGTCCACTCTACTT-----------------------------------------------------------------------------------------	19	-	-	-	2	2	-	-	2
rat	ttcttTGCCATGTCCACTCTACTTtgcttttgctactgtgagggttctttcacccactctttacccttttaacccctttacactagataggatagaaaaaggatagaaaagaa
	*****************************************************************************************************************
rat	.(((((....(((((..((((.....(((...(((.((((((((..............................)))))))).)))..))).))))....)))))..))))).	0.520 -20.31

rat

chromosome:10:78381186:78381298:-1

intergenic

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other hairpins:

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