miR-Intess: classification

other hairpins

block43511 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.280	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	18	15	3arm	13	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AAGAGCA------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------------------------------------------------------AAAGAGCAGCACAGCTGGCC------------------	20	1
rat	ggggagggctggaagtgcaacaaatcttgctgtgctgagatcgctcacagtgtgtcctctaagaactgaaaagcaatggtggAAAGAGCAGCACAGCTGGCCatcagcgtcaccaatccc
	************************************************************************************************************************
rat	((((..((.(((...(((.......((.(((((((((...((..((((..(((....((........))...)))...))))...)).))))))))).))......))))))))..))))	0.640 -34.92

rat

chromosome:10:91736042:91736161:-1

intergenic

block59249 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.125	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	12	2	3arm	11	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------GGCAGAG------------------------	1	novel
		len	cloning frequencies
			T2S2
	----------------------------------AGGCAGAGTGAAGAGGAAGA------------	20	1
rat	ttgccctccattctccttatggtggtgggtgcccAGGCAGAGTGAAGAGGAAGAatgccagggtag
	******************************************************************
rat	.((((((.((((((((((((..((.(((....)))..))..))...))))).)))))..)))))).	0.660 -21.30

rat

chromosome:10:12636308:12636373:1

intergenic

block59254 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.125	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	12	2	3arm	11	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------GGCAGAG------------------------	1	novel
		len	cloning frequencies
			T2S2
	----------------------------------AGGCAGAGTGAAGAGGAAGA------------	20	1
rat	ttgccctccattctccttatggtggtgggtgcccAGGCAGAGTGAAGAGGAAGAatgccagggtag
	******************************************************************
rat	.((((((.((((((((((((..((.(((....)))..))..))...))))).)))))..)))))).	0.660 -21.30

rat

chromosome:10:12638369:12638434:1

intergenic

block69699 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.317	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	16	9	3arm	35	nd	0.50	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GUAACAC----------------------------	1	novel
		len	cloning frequencies
			T1S1
	--------------------------------------------------------------TGTAACACAGAGTGTCCCAG----------------	20	1
rat	agtgtcaatatgtaacacagaatcccagtgtaaatatgtagcacagagttccagtgtaaataTGTAACACAGAGTGTCCCAGtgtaaatatataacac
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000007131 ENSRNOG00000005097 Cdkl3
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059040 ENSRNOG00000005097 Cdkl3
rat	.((((..((((((.((((.((.((...((((..((((...((((.........))))..))))...)))).))...))...))))..)))))).))))	0.580 -15.80

rat

chromosome:10:37561392:37561489:1

Same_strand|Intronic_coding|ENSRNOT00000007131|ENSRNOG00000005097 ## ENSRNOG00000005097|protein_coding|Cdkl3|Cyclin-dependent kinase-like 3 (EC 2.7.11.22) (Serine/threonine protein kinase NKIATRE). [Source:UniProtKB/Swiss-Prot;Acc:Q9JM01] ## {Repeats: trf 751 771 0 class=trf}

block69700 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.854	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	17	14	5arm	35	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	------------------GUAACAC----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1
	-----------------TGTAACACAGAGTGTCCCAG----------------------------------------------------------------------	20	1
rat	gtgtcccagtgtaaataTGTAACACAGAGTGTCCCAGtgtcaatatgtaatagagtgtcccagtgtcaatatgtaatacagagtgtcccagtgtaaatatgtaacac
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000007131 ENSRNOG00000005097 Cdkl3
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000059040 ENSRNOG00000005097 Cdkl3
rat	((((..((.........((..((((...((((..((.((.((...((..((.....))..)).)).))...))..))))...))))..)).........))..))))	0.980 -17.47

rat

chromosome:10:37561521:37561627:1

block85338 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.158	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	16	16	3arm	153	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UGCUCUC------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----------------------------------------------------------------------------------TTGCTCTCAATGACAACTTTGT----------------	22	1
rat	ctgggctacactgaggaccaggttgtctcctgagacttcaacagcaactcccactcttccacctttgatgctggggctggcaTTGCTCTCAATGACAACTTTGTaaagctcatttcctgg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000049846 ENSRNOG00000007019 Accn1
rat	(((((......((((.((.((((((((...(((((......((((....((((....((.......))...)))))))).......)))))..)))))))).))....))))...)))))	0.780 -30.32

rat

chromosome:10:70056698:70056817:1

Opposite_strand|Intronic_coding|ENSRNOT00000049846|ENSRNOG00000007019 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000009348|ENSRNOG00000007019 ## ENSRNOG00000007019|protein_coding|Accn1|Amiloride-sensitive cation channel 1, neuronal (Amiloride-sensitive brain sodium channel) (Amiloride-sensitive brain sodium channel 2) (Amiloride-sensitive cation channel neuronal 1) (Acid-sensing ion channel 2) (Brain sodium channel 1) (BNaC1) (BNC1) (Ma [Source:UniProtKB/Swiss-Prot;Acc:Q62962]

block126480 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.164	no	no	0.59/0.59	22/22/1.00	0.0	0.0	2	0	1	0	12	14	5arm	100	nd	0.32	3	2	1	na	na

		reads	miRBase family seed
seed	-------------CACCAGC--------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			T2S1
	------------CCACCAGCTCAATGGGGTCTAC------------------------------------------------------------------	22	2
rat	caggcaggaaaaCCACCAGCTCAATGGGGTCTACatcatgggcaatcaccgccagctgagccttcttgttctccaccaaggtggtgactgtattgacctc
	****************************************************************************************************
rat	.((((((......(((((.((...(((((...(((....((((..(((........)))))))...))).)))))...)).)))))......))).))).	0.450 -27.90

rat

chromosome:11:55645635:55645734:-1

intergenic

block187705 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	7	31	3arm	25	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UAACAUU--------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------------------------------------------------------------TTAACATTTGATAGTCAGCAG-------	21	1
rat	tagttttctcacttcctgccatgttgatattctggactctgggttctctcctaggacagttctttttccccatgtccagtctgtcTTAACATTTGATAGTCAGCAGatcagct
	*****************************************************************************************************************
rat	.((((.(((..((..(((.((((((((((..((((((..((((..((.((....)).)).........)))).))))))..))))..))))..)).)))..)).)))..))))	0.420 -24.10

rat

chromosome:12:19029512:19029624:-1

intergenic

block187921 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	7	31	3arm	25	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UAACAUU--------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------------------------------------------------------------TTAACATTTGATAGTCAGCAG-------	21	1
rat	tagttttctcacttcctgccatgttgatattctggactctgggttctctcctaggacagttctttttccccatgtccagtctgtcTTAACATTTGATAGTCAGCAGatcagct
	*****************************************************************************************************************
rat	.((((.(((..((..(((.((((((((((..((((((..((((..((.((....)).)).........)))).))))))..))))..))))..)).)))..)).)))..))))	0.420 -24.10

rat

chromosome:12:19498574:19498686:-1

intergenic

block188549 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	7	31	3arm	25	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UAACAUU--------------------	1	novel
		len	cloning frequencies
			T5S2
	-------------------------------------------------------------------------------------TTAACATTTGATAGTCAGCAG-------	21	1
rat	tagttttctcacttcctgccatgttgatattctggactctgggttctctcctaggacagttatttttccccatgtccagtctgtcTTAACATTTGATAGTCAGCAGatcagct
	*****************************************************************************************************************
rat	.((((.(((..((..(((.((((((((((..((((((..((((..((.((....)).)).........)))).))))))..))))..))))..)).)))..)).)))..))))	0.420 -24.10