miR-Intess: classification

other hairpins

block1707529 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.375	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	7	24	3arm	22	nd	0.40	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------CCCAGCU-------------------	1	novel
		len	cloning frequencies
			T3S2
	-------------------------------------------------------------------------------------TCCCAGCTCACAGTGTTCTC-------	20	1
rat	agtgttcccggctcacagtgttcctggctcacagtgttctcagctcacagtgttctcagctcacagtgttcccagctcacagtgtTCCCAGCTCACAGTGTTCTCagctcac
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000021306 ENSRNOG00000015910 Ifltd1_predicted
rat	.(((.....((..(((.(((...((((..(((.(((..((.....(((.(((.........))).))).....))..))).)))...))))..))).)))..)).....)))	0.840 -25.00

rat

chromosome:4:183060550:183060661:1

Opposite_strand|Intronic_coding|ENSRNOT00000021306|ENSRNOG00000015910 ## ENSRNOG00000015910|protein_coding|Ifltd1_predicted| ## {Repeats: trf 647 667 0 class=trf}

block80148 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.390	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	10	9	3arm	12	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UUGGUGG------------------------	1	novel
		len	cloning frequencies
			T5S2
	----------------------------------------------------CTTGGTGGCCAAAGCTGTTTCA----------	22	1
rat	gtcacagacagagcagatggcaggccttgcttcatcctagcttgatgcctggCTTGGTGGCCAAAGCTGTTTCAtgcctagggc
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000036278 ENSRNOG00000024535 Zzef1
rat	(((..((.((((((((.((((..(((..(((.((((.......))))...)))..))).))))...))))))..)).))..)))	0.770 -26.00

rat

chromosome:10:59732357:59732440:1

block255795 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.815	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	5	3	3arm	110	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------CAAGUAU------------------	2	novel
		len	cloning frequencies
			T2S1
	---------------------------------------CCAAGTATGATGACATCAAGA-----	21	2
rat	tatctgttgtggatctgacatgctgcctggagaaacctgCCAAGTATGATGACATCAAGAaggtg
	*****************************************************************
rat	(((((....(((.((...((((((...(((((....)).)))))))))..))..)))...)))))	0.940 -11.00

rat

chromosome:13:41885682:41885746:-1

intergenic

block742247 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.351	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	21	2	3arm	110	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------CAAGUAU----------------------------------	2	novel
		len	cloning frequencies
			T2S1
	------------------------------------------------------------------CCAAGTATGATGACATCAAGA---------------------	21	2
rat	tggccttctgtgttcctacccccaatgtatctgttgtagatctgacttgccacctaatgaaacctgCCAAGTATGATGACATCAAGAaggtggtgaattaggaagcca
	************************************************************************************************************
rat	.(((.(((((.(((((((((.........(((..(((..(((..(((((.((............)).)))))..))).)))...))).))))).))))))))).))).	0.610 -25.20

rat

chromosome:18:39117837:39117944:1

intergenic

block743868 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.187	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	17	17	3arm	110	nd	0.38	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------CAAGUAU------------------------------	2	novel
		len	cloning frequencies
			T2S1
	-----------------------------------------------------------------------------CCAAGTATGATGACATCAAGA-----------------	21	2
rat	gctcataggcatggccttctgtgttcctacctccaatatatctcttgtggatctgacatgccacctggagaaacctgCCAAGTATGATGACATCAAGAaggtggtgaaataggca
	*******************************************************************************************************************
rat	((..((...(((.(((((((((((((.(((..........(((((.((((..........))))..)))))..........))).))..))))..))))))).)))..))..)).	0.740 -30.45

rat

chromosome:18:43250734:43250848:1

intergenic

block2241921 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.798	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	6	4	3arm	110	nd	0.43	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------CAAGUAU-------------------	2	novel
		len	cloning frequencies
			T2S1
	---------------------------------------CCAAGTATGATGACATCAAGA------	21	2
rat	tatctgttgtggatctgacgtgctgcctggagaaatctgCCAAGTATGATGACATCAAGAaggtgg
	******************************************************************
rat	(((((....(((.((...((((((...((((....))))...))))))..))..)))...))))).	0.840 -13.00

rat

chromosome:7:100952830:100952895:1

intergenic

block1437575 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.529	no	no	0.50/0.53	19/23/0.71	0.0	0.0	4	0	3	0	9	28	5arm	49	nd	0.40	3	7	3	na	na

		reads	miRBase family seed
seed	----------CCGUUGU------------------------------------------------------------------------------------------------	4	novel
seed	-----------CGUUGUG-----------------------------------------------------------------------------------------------	2	novel
seed	---------UCCGUUG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T2S2	T3S1
	---------TCCGTTGTGGATCTGACATG------------------------------------------------------------------------------------	20	-	-	4
	----------CCGTTGTGGATCTGACATG------------------------------------------------------------------------------------	19	1	1	-
	--------ATCCGTTGTGGATCTGACATGCC----------------------------------------------------------------------------------	23	-	-	1
rat	cccaatgtaTCCGTTGTGGATCTGACATGccgcctggagacacccgccaagtatgatgacatcaagaaggtagtgaagcaggcgtctgagggcccaccaaagggcatcctggg
	*****************************************************************************************************************
rat	((((..((..((...((((..((..((.((.(((((....(((..(((.....((((...))))....))).)))...))))))).)).))..))))....))..))..))))	0.930 -32.70

rat

chromosome:3:9271890:9272002:1

intergenic

novel_Multihit_randfoldOK (399 loci)

block59094 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	6	9	5arm	31	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-------GACAGAU------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	------AGACAGATATCCTTGGTCCT------------------------------------------------------	20	1
rat	ctgccaAGACAGATATCCTTGGTCCTtgtcctgggaatcccaggataagaaaacatatatcaagtcagaaatccttggta
	********************************************************************************
rat	.(((((((...(((.((((((((.(((((((((((...))))))))))).........))))))...)).))))))))))	0.710 -27.30

rat

chromosome:10:12291680:12291759:1

intergenic

block176405 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	13	5arm	36	nd	0.15	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------GACACCA----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------TGACACCATGTTGTATTTCC----------------------------------------------------------------------------------	20	1
rat	gtaacagtagagtactTGACACCATGTTGTATTTCCtcggcttgaagaacagcttttcttaaacgctggggagattttacagtcatgactcaagtcagaacttatctttaactgggac
	**********************************************************************************************************************
rat	((..((((((((.((((((...(((((((((((((((((((...(((((......)))))....))))))))))...))))).))))..))))))..........))))).)))..))	0.740 -35.00

rat

chromosome:12:28304:28421:-1

intergenic

block176447 [novel_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	16	13	5arm	36	nd	0.15	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------GACACCA----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------TGACACCATGTTGTATTTCC----------------------------------------------------------------------------------	20	1
rat	gtaacagtagagtactTGACACCATGTTGTATTTCCtcggcttgaagaacagcttttcttaaacgctggggagattttacagtcatgactcaagtcagaacttatctttaactgggac
	**********************************************************************************************************************
rat	((..((((((((.((((((...(((((((((((((((((((...(((((......)))))....))))))))))...))))).))))..))))))..........))))).)))..))	0.740 -35.00